Multiple sequence alignment - TraesCS4A01G288900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G288900 chr4A 100.000 2807 0 0 1 2807 593496886 593494080 0.000000e+00 5184
1 TraesCS4A01G288900 chr4A 96.324 136 5 0 2672 2807 598152560 598152425 1.010000e-54 224
2 TraesCS4A01G288900 chr4D 91.020 1559 105 21 1132 2675 9717896 9719434 0.000000e+00 2071
3 TraesCS4A01G288900 chr4D 92.157 918 29 7 18 896 9716639 9717552 0.000000e+00 1256
4 TraesCS4A01G288900 chr4D 82.812 320 18 15 853 1137 9717540 9717857 4.640000e-63 252
5 TraesCS4A01G288900 chr6A 97.794 136 3 0 2672 2807 84905864 84905729 4.670000e-58 235
6 TraesCS4A01G288900 chr6A 96.296 135 5 0 2670 2804 14304928 14305062 3.640000e-54 222
7 TraesCS4A01G288900 chr3A 97.037 135 4 0 2672 2806 729356333 729356199 7.820000e-56 228
8 TraesCS4A01G288900 chr2A 96.403 139 3 1 2671 2807 88286269 88286131 7.820000e-56 228
9 TraesCS4A01G288900 chr2A 96.377 138 5 0 2670 2807 765825530 765825393 7.820000e-56 228
10 TraesCS4A01G288900 chr2A 96.269 134 5 0 2674 2807 738267674 738267807 1.310000e-53 220
11 TraesCS4A01G288900 chr7A 96.269 134 5 0 2674 2807 77593157 77593024 1.310000e-53 220
12 TraesCS4A01G288900 chr7A 96.269 134 5 0 2674 2807 669860125 669859992 1.310000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G288900 chr4A 593494080 593496886 2806 True 5184 5184 100.000 1 2807 1 chr4A.!!$R1 2806
1 TraesCS4A01G288900 chr4D 9716639 9719434 2795 False 1193 2071 88.663 18 2675 3 chr4D.!!$F1 2657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
271 283 0.250901 AACTTGCCGGCACAGAAGAT 60.251 50.0 32.95 16.24 0.0 2.40 F
1681 1832 0.178861 ATGGTGGGAGGAGAGTGGTT 60.179 55.0 0.00 0.00 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1725 1876 0.458669 GGCTGTTGGCATGGATCTTG 59.541 55.0 0.00 0.0 44.01 3.02 R
2710 2872 0.804156 CACGCGGCAAACAGGTTTTT 60.804 50.0 12.47 0.0 0.00 1.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.811722 TGCATGACGAACTGAAATCAC 57.188 42.857 0.00 0.00 0.00 3.06
22 23 2.483877 TGCATGACGAACTGAAATCACC 59.516 45.455 0.00 0.00 0.00 4.02
23 24 2.474526 GCATGACGAACTGAAATCACCG 60.475 50.000 0.00 0.00 0.00 4.94
24 25 1.144969 TGACGAACTGAAATCACCGC 58.855 50.000 0.00 0.00 0.00 5.68
25 26 0.442699 GACGAACTGAAATCACCGCC 59.557 55.000 0.00 0.00 0.00 6.13
65 66 4.015406 ATTGGGCACAGCGACGGA 62.015 61.111 0.00 0.00 0.00 4.69
271 283 0.250901 AACTTGCCGGCACAGAAGAT 60.251 50.000 32.95 16.24 0.00 2.40
338 350 3.168528 AAGCCGACCACCCACAGT 61.169 61.111 0.00 0.00 0.00 3.55
342 354 2.111043 CGACCACCCACAGTTGCT 59.889 61.111 0.00 0.00 0.00 3.91
589 624 4.483243 GCCGGCGGGAATTCTCCA 62.483 66.667 29.48 0.00 44.51 3.86
598 633 1.657751 GGAATTCTCCAAGCGCCACC 61.658 60.000 2.29 0.00 41.96 4.61
701 738 1.380524 CGAGGAGGAAGAACGAGCTA 58.619 55.000 0.00 0.00 0.00 3.32
702 739 1.332375 CGAGGAGGAAGAACGAGCTAG 59.668 57.143 0.00 0.00 0.00 3.42
703 740 1.066454 GAGGAGGAAGAACGAGCTAGC 59.934 57.143 6.62 6.62 0.00 3.42
704 741 1.107945 GGAGGAAGAACGAGCTAGCT 58.892 55.000 19.45 19.45 0.00 3.32
767 804 1.746615 TGAAGAAGATGGCAGGCGC 60.747 57.895 0.00 0.00 37.44 6.53
804 841 1.546961 CTCGACAGACCTAACACCCT 58.453 55.000 0.00 0.00 0.00 4.34
844 884 2.694628 ACCTACACTGTTCGTTACACCA 59.305 45.455 0.00 0.00 32.10 4.17
870 941 0.671781 CCACACTTCTTGGCCTCTCG 60.672 60.000 3.32 0.00 0.00 4.04
902 973 2.670934 CACTTCTTGGCAGGCGCT 60.671 61.111 7.64 0.00 38.60 5.92
935 1014 5.536161 GGCACCATCACCACATAAATAGAAT 59.464 40.000 0.00 0.00 0.00 2.40
936 1015 6.714810 GGCACCATCACCACATAAATAGAATA 59.285 38.462 0.00 0.00 0.00 1.75
948 1027 9.476202 CACATAAATAGAATAGTGTTGATCCGA 57.524 33.333 0.00 0.00 0.00 4.55
955 1034 1.187087 AGTGTTGATCCGAGTCTCCC 58.813 55.000 0.00 0.00 0.00 4.30
964 1043 1.326213 CCGAGTCTCCCTCAGTGCAT 61.326 60.000 0.00 0.00 40.48 3.96
1039 1145 1.208706 CTTCTTCTTCTCCCTCCCCC 58.791 60.000 0.00 0.00 0.00 5.40
1053 1159 4.704833 CCCCTCCACCACGCACTG 62.705 72.222 0.00 0.00 0.00 3.66
1061 1167 3.625897 CCACGCACTGGACCCAGA 61.626 66.667 21.84 0.00 46.30 3.86
1062 1168 2.047844 CACGCACTGGACCCAGAG 60.048 66.667 21.84 15.13 46.30 3.35
1064 1170 2.279069 ACGCACTGGACCCAGAGAG 61.279 63.158 21.84 17.35 46.30 3.20
1066 1172 1.821061 CGCACTGGACCCAGAGAGTT 61.821 60.000 21.84 0.00 46.30 3.01
1071 1177 3.056465 CACTGGACCCAGAGAGTTTACTC 60.056 52.174 21.84 1.59 46.30 2.59
1077 1183 5.513267 GGACCCAGAGAGTTTACTCAATGTT 60.513 44.000 12.10 0.69 45.21 2.71
1078 1184 5.308825 ACCCAGAGAGTTTACTCAATGTTG 58.691 41.667 12.10 6.26 45.21 3.33
1096 1202 0.520404 TGAGTACAACGTCTCGAGCC 59.480 55.000 7.81 0.00 33.88 4.70
1098 1204 1.132643 GAGTACAACGTCTCGAGCCAT 59.867 52.381 7.81 0.00 0.00 4.40
1108 1214 3.486263 CGAGCCATTCGTTCACCC 58.514 61.111 0.00 0.00 44.27 4.61
1194 1345 6.264518 GTCCCAACCGGTTTATCATGATAAAT 59.735 38.462 32.84 20.07 42.93 1.40
1263 1414 4.139234 GACCTGTACGTCCCGGGC 62.139 72.222 18.49 10.58 0.00 6.13
1272 1423 2.033194 CGTCCCGGGCTTCAAAGAC 61.033 63.158 18.49 4.91 0.00 3.01
1298 1449 3.138283 ACTCTCCAGTGGAACCATTTCAA 59.862 43.478 14.17 0.00 37.80 2.69
1300 1451 3.888930 TCTCCAGTGGAACCATTTCAAAC 59.111 43.478 14.17 0.00 37.80 2.93
1348 1499 0.310854 GGAACTGCCCTTTGAACACG 59.689 55.000 0.00 0.00 0.00 4.49
1349 1500 1.305201 GAACTGCCCTTTGAACACGA 58.695 50.000 0.00 0.00 0.00 4.35
1357 1508 3.150767 CCCTTTGAACACGATTACCCAA 58.849 45.455 0.00 0.00 0.00 4.12
1359 1510 4.542735 CCTTTGAACACGATTACCCAAAC 58.457 43.478 0.00 0.00 0.00 2.93
1365 1516 4.094830 ACACGATTACCCAAACCTTCTT 57.905 40.909 0.00 0.00 0.00 2.52
1368 1519 3.014623 CGATTACCCAAACCTTCTTCCC 58.985 50.000 0.00 0.00 0.00 3.97
1385 1536 1.362355 CCTTGTTCCCAAACGGCAC 59.638 57.895 0.00 0.00 38.28 5.01
1388 1539 0.970937 TTGTTCCCAAACGGCACCAA 60.971 50.000 0.00 0.00 38.28 3.67
1391 1542 0.461961 TTCCCAAACGGCACCAAAAG 59.538 50.000 0.00 0.00 0.00 2.27
1392 1543 0.395862 TCCCAAACGGCACCAAAAGA 60.396 50.000 0.00 0.00 0.00 2.52
1399 1550 0.950836 CGGCACCAAAAGATCACACA 59.049 50.000 0.00 0.00 0.00 3.72
1401 1552 2.746904 CGGCACCAAAAGATCACACATA 59.253 45.455 0.00 0.00 0.00 2.29
1402 1553 3.181507 CGGCACCAAAAGATCACACATAG 60.182 47.826 0.00 0.00 0.00 2.23
1404 1555 4.142600 GGCACCAAAAGATCACACATAGAC 60.143 45.833 0.00 0.00 0.00 2.59
1408 1559 5.221925 ACCAAAAGATCACACATAGACCTGT 60.222 40.000 0.00 0.00 0.00 4.00
1411 1562 7.011763 CCAAAAGATCACACATAGACCTGTATG 59.988 40.741 0.00 0.00 36.60 2.39
1412 1563 7.423844 AAAGATCACACATAGACCTGTATGA 57.576 36.000 0.00 0.00 37.01 2.15
1416 1567 6.605471 TCACACATAGACCTGTATGAAGTT 57.395 37.500 0.00 0.00 29.99 2.66
1441 1592 2.566529 GCAAAGCCGCCACCTTAC 59.433 61.111 0.00 0.00 0.00 2.34
1461 1612 4.160635 GCATTCCGGACGTTGGCG 62.161 66.667 1.83 0.00 44.93 5.69
1463 1614 2.125673 ATTCCGGACGTTGGCGAG 60.126 61.111 1.83 0.00 42.00 5.03
1474 1625 2.061773 CGTTGGCGAGCTATAATCCTG 58.938 52.381 0.00 0.00 41.33 3.86
1531 1682 5.613329 TGGTAACACTAATCGTCACCTTTT 58.387 37.500 0.00 0.00 46.17 2.27
1588 1739 1.202604 TGAAGAACGAGTGGGACAACC 60.203 52.381 0.00 0.00 44.16 3.77
1632 1783 2.025418 GGAGGCACCGTACGTTGTG 61.025 63.158 14.52 15.99 35.58 3.33
1641 1792 1.211709 GTACGTTGTGCAATGGGGC 59.788 57.895 0.00 0.00 0.00 5.80
1681 1832 0.178861 ATGGTGGGAGGAGAGTGGTT 60.179 55.000 0.00 0.00 0.00 3.67
1698 1849 2.093764 TGGTTGCAAAAGTTGGACCAAG 60.094 45.455 7.31 0.00 32.52 3.61
1699 1850 2.549926 GTTGCAAAAGTTGGACCAAGG 58.450 47.619 7.31 0.00 0.00 3.61
1700 1851 2.151502 TGCAAAAGTTGGACCAAGGA 57.848 45.000 7.31 0.00 0.00 3.36
1701 1852 1.754226 TGCAAAAGTTGGACCAAGGAC 59.246 47.619 7.31 0.00 0.00 3.85
1702 1853 1.754226 GCAAAAGTTGGACCAAGGACA 59.246 47.619 7.31 0.00 0.00 4.02
1703 1854 2.167487 GCAAAAGTTGGACCAAGGACAA 59.833 45.455 7.31 0.00 0.00 3.18
1705 1856 4.432712 CAAAAGTTGGACCAAGGACAAAG 58.567 43.478 7.31 0.00 0.00 2.77
1707 1858 2.932261 AGTTGGACCAAGGACAAAGAC 58.068 47.619 7.31 0.00 0.00 3.01
1714 1865 4.312443 GACCAAGGACAAAGACGACATTA 58.688 43.478 0.00 0.00 0.00 1.90
1715 1866 4.315803 ACCAAGGACAAAGACGACATTAG 58.684 43.478 0.00 0.00 0.00 1.73
1723 1874 6.237595 GGACAAAGACGACATTAGAGAATTCG 60.238 42.308 0.00 0.00 34.53 3.34
1725 1876 6.308282 ACAAAGACGACATTAGAGAATTCGAC 59.692 38.462 0.00 0.00 33.54 4.20
1743 1894 1.133790 GACAAGATCCATGCCAACAGC 59.866 52.381 0.00 0.00 44.14 4.40
1748 1899 4.387343 CCATGCCAACAGCCCCCT 62.387 66.667 0.00 0.00 42.71 4.79
1787 1938 3.999663 CTGCTCTTCTTACAAAGGACCAG 59.000 47.826 0.00 0.00 0.00 4.00
1791 1942 4.969484 TCTTCTTACAAAGGACCAGGAAC 58.031 43.478 0.00 0.00 0.00 3.62
1797 1948 3.555966 ACAAAGGACCAGGAACTTCAAG 58.444 45.455 0.00 0.00 34.60 3.02
1801 1952 4.353383 AGGACCAGGAACTTCAAGTTAC 57.647 45.455 4.05 4.05 38.80 2.50
1804 1955 4.444449 GGACCAGGAACTTCAAGTTACAGT 60.444 45.833 15.23 11.18 41.54 3.55
1805 1956 4.451900 ACCAGGAACTTCAAGTTACAGTG 58.548 43.478 15.23 5.11 41.54 3.66
1806 1957 4.163458 ACCAGGAACTTCAAGTTACAGTGA 59.837 41.667 15.23 0.00 41.54 3.41
1807 1958 4.752101 CCAGGAACTTCAAGTTACAGTGAG 59.248 45.833 15.23 0.00 41.54 3.51
1808 1959 4.212214 CAGGAACTTCAAGTTACAGTGAGC 59.788 45.833 15.23 0.00 41.54 4.26
1809 1960 4.127171 GGAACTTCAAGTTACAGTGAGCA 58.873 43.478 7.72 0.00 38.90 4.26
1811 1962 5.239525 GGAACTTCAAGTTACAGTGAGCATT 59.760 40.000 7.72 0.00 38.90 3.56
1812 1963 6.426937 GGAACTTCAAGTTACAGTGAGCATTA 59.573 38.462 7.72 0.00 38.90 1.90
1814 1965 7.369803 ACTTCAAGTTACAGTGAGCATTATG 57.630 36.000 0.00 0.00 0.00 1.90
1815 1966 7.161404 ACTTCAAGTTACAGTGAGCATTATGA 58.839 34.615 0.00 0.00 0.00 2.15
1816 1967 7.661437 ACTTCAAGTTACAGTGAGCATTATGAA 59.339 33.333 0.00 0.00 0.00 2.57
1817 1968 8.565896 TTCAAGTTACAGTGAGCATTATGAAT 57.434 30.769 0.00 0.00 0.00 2.57
1818 1969 7.977904 TCAAGTTACAGTGAGCATTATGAATG 58.022 34.615 0.00 0.00 41.85 2.67
1819 1970 7.607607 TCAAGTTACAGTGAGCATTATGAATGT 59.392 33.333 0.00 0.00 41.01 2.71
1820 1971 8.882736 CAAGTTACAGTGAGCATTATGAATGTA 58.117 33.333 0.00 0.00 41.01 2.29
1821 1972 8.425577 AGTTACAGTGAGCATTATGAATGTAC 57.574 34.615 0.00 0.00 41.01 2.90
1822 1973 7.495934 AGTTACAGTGAGCATTATGAATGTACC 59.504 37.037 0.00 0.00 41.01 3.34
1844 1995 5.923684 ACCATGTTGTTTTACATTTAAGCCG 59.076 36.000 0.00 0.00 36.64 5.52
1848 1999 4.428615 TGTTTTACATTTAAGCCGGAGC 57.571 40.909 5.05 0.00 40.32 4.70
1854 2005 1.133025 CATTTAAGCCGGAGCACTTGG 59.867 52.381 5.05 0.00 43.56 3.61
1865 2016 3.003480 GGAGCACTTGGTGTATTCTGTC 58.997 50.000 0.00 0.00 35.75 3.51
1867 2018 4.256920 GAGCACTTGGTGTATTCTGTCAT 58.743 43.478 0.00 0.00 35.75 3.06
1904 2059 8.521176 ACTAGTAGTACTGTATTGTTCCAGTTG 58.479 37.037 13.29 0.00 41.85 3.16
1910 2065 5.876357 ACTGTATTGTTCCAGTTGGTGTAT 58.124 37.500 0.00 0.00 38.76 2.29
1913 2068 5.937540 TGTATTGTTCCAGTTGGTGTATCAG 59.062 40.000 0.00 0.00 36.34 2.90
1928 2083 6.316140 TGGTGTATCAGTCAAGAAATGTATGC 59.684 38.462 0.00 0.00 0.00 3.14
1929 2084 6.316140 GGTGTATCAGTCAAGAAATGTATGCA 59.684 38.462 0.00 0.00 0.00 3.96
1930 2085 7.012704 GGTGTATCAGTCAAGAAATGTATGCAT 59.987 37.037 3.79 3.79 36.80 3.96
1931 2086 7.854422 GTGTATCAGTCAAGAAATGTATGCATG 59.146 37.037 10.16 0.00 35.15 4.06
1932 2087 7.769970 TGTATCAGTCAAGAAATGTATGCATGA 59.230 33.333 10.16 0.00 35.15 3.07
1937 2092 5.981315 GTCAAGAAATGTATGCATGAATGGG 59.019 40.000 10.16 0.00 35.15 4.00
1952 2107 6.732154 CATGAATGGGTGCTGTAAGAATAAG 58.268 40.000 0.00 0.00 34.07 1.73
1957 2114 9.120538 GAATGGGTGCTGTAAGAATAAGAAATA 57.879 33.333 0.00 0.00 34.07 1.40
2143 2300 4.637091 TCCGTCTATCTTTGATGTGTACGA 59.363 41.667 0.00 0.00 0.00 3.43
2145 2302 5.329493 CGTCTATCTTTGATGTGTACGACA 58.671 41.667 0.00 1.48 39.53 4.35
2155 2312 6.144078 TGATGTGTACGACATAGCTGTTAT 57.856 37.500 0.00 0.00 45.90 1.89
2192 2349 2.599082 CGCTGTTGATCTACCGAGAAAC 59.401 50.000 4.82 0.00 34.61 2.78
2199 2356 4.832248 TGATCTACCGAGAAACAAGCAAT 58.168 39.130 0.00 0.00 34.61 3.56
2209 2366 6.403527 CCGAGAAACAAGCAATCACATTCATA 60.404 38.462 0.00 0.00 0.00 2.15
2264 2421 6.097554 TGTGGTTCAAAGGTTTTGTATCATGT 59.902 34.615 0.00 0.00 0.00 3.21
2316 2474 5.897377 TGGGCTAGTTCTAATTTTCAAGC 57.103 39.130 0.00 0.00 0.00 4.01
2333 2491 3.440173 TCAAGCTTCATTCCAACGAATCC 59.560 43.478 0.00 0.00 36.54 3.01
2414 2572 4.087892 CCCGTGGTGAGCAGGAGG 62.088 72.222 5.85 2.06 0.00 4.30
2415 2573 2.997315 CCGTGGTGAGCAGGAGGA 60.997 66.667 5.85 0.00 0.00 3.71
2416 2574 2.583441 CCGTGGTGAGCAGGAGGAA 61.583 63.158 5.85 0.00 0.00 3.36
2453 2615 0.596577 TTGTAGCAGTTCTCGACGCT 59.403 50.000 0.00 0.00 39.90 5.07
2460 2622 2.202610 TTCTCGACGCTGGCATCG 60.203 61.111 9.46 9.46 39.72 3.84
2477 2639 2.125350 GCAGTTCTGGGAGAGGCG 60.125 66.667 1.97 0.00 0.00 5.52
2510 2672 1.202770 CCGGGAACACCTTCTGAAGTT 60.203 52.381 15.72 5.08 36.97 2.66
2533 2695 3.057033 GCAGATGGAAATGCTTCAGTGTT 60.057 43.478 0.00 0.00 39.38 3.32
2551 2713 8.915057 TCAGTGTTAGACTACAGTTAGTTAGT 57.085 34.615 0.00 0.00 38.77 2.24
2561 2723 9.442047 GACTACAGTTAGTTAGTTAGTCTACCA 57.558 37.037 0.00 0.00 38.77 3.25
2594 2756 7.863877 TCAAATAAAACTCTTTTTAACCTCGCC 59.136 33.333 0.00 0.00 39.94 5.54
2656 2818 2.697761 GCCGCCTCACTCACGTAGA 61.698 63.158 0.00 0.00 0.00 2.59
2675 2837 5.048921 CGTAGAATTAGGATCGGCTGTTAGA 60.049 44.000 0.00 0.00 0.00 2.10
2676 2838 5.461032 AGAATTAGGATCGGCTGTTAGAG 57.539 43.478 0.00 0.00 0.00 2.43
2691 2853 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
2692 2854 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
2693 2855 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
2694 2856 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
2695 2857 4.087892 ATCTCCAACAGCCGCGCT 62.088 61.111 5.56 0.00 40.77 5.92
2696 2858 2.721167 ATCTCCAACAGCCGCGCTA 61.721 57.895 5.56 0.00 36.40 4.26
2697 2859 2.238847 ATCTCCAACAGCCGCGCTAA 62.239 55.000 5.56 0.00 36.40 3.09
2698 2860 2.434185 TCCAACAGCCGCGCTAAG 60.434 61.111 5.56 0.00 36.40 2.18
2699 2861 4.166011 CCAACAGCCGCGCTAAGC 62.166 66.667 5.56 5.74 36.40 3.09
2727 2889 4.411136 AAAAACCTGTTTGCCGCG 57.589 50.000 0.00 0.00 32.36 6.46
2728 2890 1.513622 AAAAACCTGTTTGCCGCGT 59.486 47.368 4.92 0.00 32.36 6.01
2729 2891 0.804156 AAAAACCTGTTTGCCGCGTG 60.804 50.000 4.92 0.00 32.36 5.34
2730 2892 3.766496 AAACCTGTTTGCCGCGTGC 62.766 57.895 4.92 9.16 41.77 5.34
2744 2906 3.660111 GTGCGCTTCGGCTGGTTT 61.660 61.111 9.73 0.00 39.13 3.27
2745 2907 2.031314 TGCGCTTCGGCTGGTTTA 59.969 55.556 9.73 0.00 39.13 2.01
2746 2908 1.598407 TGCGCTTCGGCTGGTTTAA 60.598 52.632 9.73 0.00 39.13 1.52
2747 2909 1.154282 GCGCTTCGGCTGGTTTAAC 60.154 57.895 0.00 0.00 39.13 2.01
2748 2910 1.131826 CGCTTCGGCTGGTTTAACG 59.868 57.895 0.00 0.00 39.13 3.18
2749 2911 1.154282 GCTTCGGCTGGTTTAACGC 60.154 57.895 0.00 0.00 38.08 4.84
2750 2912 1.131826 CTTCGGCTGGTTTAACGCG 59.868 57.895 3.53 3.53 0.00 6.01
2751 2913 2.827959 CTTCGGCTGGTTTAACGCGC 62.828 60.000 5.73 0.00 0.00 6.86
2752 2914 4.454717 CGGCTGGTTTAACGCGCC 62.455 66.667 5.73 13.75 37.40 6.53
2753 2915 4.111016 GGCTGGTTTAACGCGCCC 62.111 66.667 5.73 0.00 34.75 6.13
2754 2916 4.454717 GCTGGTTTAACGCGCCCG 62.455 66.667 5.73 0.00 41.14 6.13
2755 2917 4.454717 CTGGTTTAACGCGCCCGC 62.455 66.667 5.73 1.98 38.22 6.13
2758 2920 4.454717 GTTTAACGCGCCCGCCTG 62.455 66.667 5.73 0.00 38.22 4.85
2782 2944 4.598894 CTCCAGCAGCCGCGCTAT 62.599 66.667 5.56 0.00 45.49 2.97
2783 2945 3.212906 CTCCAGCAGCCGCGCTATA 62.213 63.158 5.56 1.56 45.49 1.31
2784 2946 2.280119 CCAGCAGCCGCGCTATAA 60.280 61.111 5.56 0.00 45.49 0.98
2785 2947 1.669115 CCAGCAGCCGCGCTATAAT 60.669 57.895 5.56 0.00 45.49 1.28
2786 2948 1.494628 CAGCAGCCGCGCTATAATG 59.505 57.895 5.56 0.00 45.49 1.90
2787 2949 2.174349 GCAGCCGCGCTATAATGC 59.826 61.111 5.56 4.97 36.40 3.56
2788 2950 2.606961 GCAGCCGCGCTATAATGCA 61.607 57.895 5.56 0.00 36.40 3.96
2789 2951 1.494628 CAGCCGCGCTATAATGCAG 59.505 57.895 5.56 0.00 36.40 4.41
2790 2952 2.174349 GCCGCGCTATAATGCAGC 59.826 61.111 5.56 0.00 35.61 5.25
2795 2957 2.202096 GCTATAATGCAGCGCGCG 60.202 61.111 28.44 28.44 46.97 6.86
2796 2958 2.202096 CTATAATGCAGCGCGCGC 60.202 61.111 45.10 45.10 46.97 6.86
2797 2959 3.947255 CTATAATGCAGCGCGCGCG 62.947 63.158 45.73 45.73 46.97 6.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.058293 GGTGATTTCAGTTCGTCATGCAA 60.058 43.478 0.00 0.00 0.00 4.08
2 3 2.474526 CGGTGATTTCAGTTCGTCATGC 60.475 50.000 0.00 0.00 0.00 4.06
3 4 2.474526 GCGGTGATTTCAGTTCGTCATG 60.475 50.000 0.00 0.00 0.00 3.07
4 5 1.732259 GCGGTGATTTCAGTTCGTCAT 59.268 47.619 0.00 0.00 0.00 3.06
5 6 1.144969 GCGGTGATTTCAGTTCGTCA 58.855 50.000 0.00 0.00 0.00 4.35
7 8 0.953960 GGGCGGTGATTTCAGTTCGT 60.954 55.000 0.00 0.00 0.00 3.85
8 9 0.953471 TGGGCGGTGATTTCAGTTCG 60.953 55.000 0.00 0.00 0.00 3.95
9 10 0.804989 CTGGGCGGTGATTTCAGTTC 59.195 55.000 0.00 0.00 0.00 3.01
10 11 0.609131 CCTGGGCGGTGATTTCAGTT 60.609 55.000 0.00 0.00 0.00 3.16
11 12 1.002134 CCTGGGCGGTGATTTCAGT 60.002 57.895 0.00 0.00 0.00 3.41
12 13 1.002134 ACCTGGGCGGTGATTTCAG 60.002 57.895 0.00 0.00 46.80 3.02
13 14 3.166434 ACCTGGGCGGTGATTTCA 58.834 55.556 0.00 0.00 46.80 2.69
21 22 2.912025 AAAGTTGCACCTGGGCGG 60.912 61.111 0.00 0.00 36.28 6.13
22 23 1.856265 GAGAAAGTTGCACCTGGGCG 61.856 60.000 0.00 0.00 36.28 6.13
23 24 0.538287 AGAGAAAGTTGCACCTGGGC 60.538 55.000 0.00 0.00 0.00 5.36
24 25 1.986882 AAGAGAAAGTTGCACCTGGG 58.013 50.000 0.00 0.00 0.00 4.45
25 26 3.709987 CAAAAGAGAAAGTTGCACCTGG 58.290 45.455 0.00 0.00 0.00 4.45
74 75 3.147595 TCTATGTCGCCGCTGCCT 61.148 61.111 0.00 0.00 0.00 4.75
134 135 4.760047 GCGTCTCCACCACCGCAT 62.760 66.667 0.00 0.00 45.12 4.73
167 168 2.282462 AAGAACAAGGGCAGGCGG 60.282 61.111 0.00 0.00 0.00 6.13
256 257 2.046023 CCATCTTCTGTGCCGGCA 60.046 61.111 29.03 29.03 0.00 5.69
325 337 1.525995 AAGCAACTGTGGGTGGTCG 60.526 57.895 0.00 0.00 0.00 4.79
327 339 2.127232 GCAAGCAACTGTGGGTGGT 61.127 57.895 0.00 0.00 0.00 4.16
338 350 2.221169 CTACCACTGTTCAGCAAGCAA 58.779 47.619 0.00 0.00 0.00 3.91
342 354 0.250727 GGGCTACCACTGTTCAGCAA 60.251 55.000 0.00 0.00 35.69 3.91
448 470 2.568612 CGCGCTCTCTGACAGGAA 59.431 61.111 5.56 0.00 0.00 3.36
506 541 2.202892 CGAGGCCCTACCGCTTTC 60.203 66.667 0.00 0.00 46.52 2.62
510 545 4.509737 GTGACGAGGCCCTACCGC 62.510 72.222 0.00 0.00 46.52 5.68
520 555 3.490759 GCCGTGCATGGTGACGAG 61.491 66.667 25.67 0.00 37.81 4.18
701 738 2.909965 GAGGGAGATCCGCGAGCT 60.910 66.667 8.23 0.86 41.52 4.09
702 739 2.414840 GAAGAGGGAGATCCGCGAGC 62.415 65.000 8.23 0.00 40.51 5.03
703 740 1.657556 GAAGAGGGAGATCCGCGAG 59.342 63.158 8.23 0.00 40.51 5.03
704 741 1.828660 GGAAGAGGGAGATCCGCGA 60.829 63.158 8.23 0.00 40.51 5.87
767 804 2.190578 GACGAGGGAGGGCCATTG 59.809 66.667 6.18 0.00 35.43 2.82
804 841 2.530497 GCCAAGCGTGTCGTTGTCA 61.530 57.895 0.00 0.00 0.00 3.58
851 891 0.671781 CGAGAGGCCAAGAAGTGTGG 60.672 60.000 5.01 0.00 39.33 4.17
870 941 6.401047 GCCAAGAAGTGTGAAAACAAGAAAAC 60.401 38.462 0.00 0.00 0.00 2.43
935 1014 2.025226 AGGGAGACTCGGATCAACACTA 60.025 50.000 0.00 0.00 0.00 2.74
936 1015 1.187087 GGGAGACTCGGATCAACACT 58.813 55.000 0.00 0.00 0.00 3.55
948 1027 1.876849 ATGATGCACTGAGGGAGACT 58.123 50.000 0.00 0.00 0.00 3.24
964 1043 1.347062 TGGTGCACCAGTGACTATGA 58.653 50.000 34.74 7.90 42.01 2.15
1053 1159 4.020128 ACATTGAGTAAACTCTCTGGGTCC 60.020 45.833 11.22 0.00 43.25 4.46
1077 1183 0.520404 GGCTCGAGACGTTGTACTCA 59.480 55.000 18.75 0.00 33.86 3.41
1078 1184 0.520404 TGGCTCGAGACGTTGTACTC 59.480 55.000 18.75 0.00 0.00 2.59
1080 1186 1.918609 GAATGGCTCGAGACGTTGTAC 59.081 52.381 30.13 12.34 31.17 2.90
1108 1214 2.252260 CAAAAGGCCAGACACGCG 59.748 61.111 5.01 3.53 0.00 6.01
1157 1308 0.747852 GTTGGGACGGGCTTGAAAAA 59.252 50.000 0.00 0.00 0.00 1.94
1161 1312 4.323477 CGGTTGGGACGGGCTTGA 62.323 66.667 0.00 0.00 0.00 3.02
1169 1320 2.993937 TCATGATAAACCGGTTGGGAC 58.006 47.619 23.08 13.19 40.75 4.46
1173 1324 8.792633 ACCATATTTATCATGATAAACCGGTTG 58.207 33.333 32.93 24.71 43.54 3.77
1194 1345 1.518325 CAGGCACGTTGTCAACCATA 58.482 50.000 10.12 0.00 0.00 2.74
1263 1414 3.181461 ACTGGAGAGTGGTGTCTTTGAAG 60.181 47.826 0.00 0.00 0.00 3.02
1339 1490 4.208746 AGGTTTGGGTAATCGTGTTCAAA 58.791 39.130 0.00 0.00 0.00 2.69
1342 1493 4.070009 AGAAGGTTTGGGTAATCGTGTTC 58.930 43.478 0.00 0.00 0.00 3.18
1344 1495 3.782656 AGAAGGTTTGGGTAATCGTGT 57.217 42.857 0.00 0.00 0.00 4.49
1348 1499 4.317530 AGGGAAGAAGGTTTGGGTAATC 57.682 45.455 0.00 0.00 0.00 1.75
1349 1500 4.140782 ACAAGGGAAGAAGGTTTGGGTAAT 60.141 41.667 0.00 0.00 0.00 1.89
1357 1508 1.856920 TGGGAACAAGGGAAGAAGGTT 59.143 47.619 0.00 0.00 37.44 3.50
1385 1536 5.248640 ACAGGTCTATGTGTGATCTTTTGG 58.751 41.667 0.00 0.00 30.46 3.28
1388 1539 7.423844 TCATACAGGTCTATGTGTGATCTTT 57.576 36.000 2.67 0.00 43.64 2.52
1391 1542 6.810911 ACTTCATACAGGTCTATGTGTGATC 58.189 40.000 7.05 0.00 46.44 2.92
1392 1543 6.798427 ACTTCATACAGGTCTATGTGTGAT 57.202 37.500 7.05 0.00 46.44 3.06
1411 1562 3.040969 GGCTTTGCCCAAGGGAACTTC 62.041 57.143 9.92 0.00 45.72 3.01
1412 1563 1.121407 GGCTTTGCCCAAGGGAACTT 61.121 55.000 9.92 0.00 46.37 2.66
1441 1592 2.474266 CAACGTCCGGAATGCACG 59.526 61.111 5.23 8.69 37.89 5.34
1461 1612 2.772287 GTGGTGCCAGGATTATAGCTC 58.228 52.381 0.00 0.00 0.00 4.09
1463 1614 1.512926 CGTGGTGCCAGGATTATAGC 58.487 55.000 5.06 0.00 34.13 2.97
1489 1640 2.658593 CGCGGATCTAAGGTGCGG 60.659 66.667 0.00 0.00 44.65 5.69
1492 1643 1.592669 CCAGCGCGGATCTAAGGTG 60.593 63.158 9.80 0.00 36.56 4.00
1500 1651 0.533491 TTAGTGTTACCAGCGCGGAT 59.467 50.000 22.10 1.80 38.63 4.18
1551 1702 2.724977 TCAGTCGTCTGTTTAGCTGG 57.275 50.000 9.48 0.00 41.91 4.85
1588 1739 5.282055 TCAAGCATGTAGATTGGTCTAGG 57.718 43.478 0.00 0.00 43.65 3.02
1591 1742 5.426504 CTCTTCAAGCATGTAGATTGGTCT 58.573 41.667 0.00 0.00 43.65 3.85
1632 1783 3.512516 GACAGCGAGCCCCATTGC 61.513 66.667 0.00 0.00 0.00 3.56
1635 1786 3.842923 CGAGACAGCGAGCCCCAT 61.843 66.667 0.00 0.00 0.00 4.00
1681 1832 1.754226 GTCCTTGGTCCAACTTTTGCA 59.246 47.619 0.00 0.00 0.00 4.08
1698 1849 6.237595 CGAATTCTCTAATGTCGTCTTTGTCC 60.238 42.308 3.52 0.00 0.00 4.02
1699 1850 6.527023 TCGAATTCTCTAATGTCGTCTTTGTC 59.473 38.462 3.52 0.00 32.41 3.18
1700 1851 6.308282 GTCGAATTCTCTAATGTCGTCTTTGT 59.692 38.462 3.52 0.00 32.41 2.83
1701 1852 6.308041 TGTCGAATTCTCTAATGTCGTCTTTG 59.692 38.462 3.52 0.00 32.41 2.77
1702 1853 6.387465 TGTCGAATTCTCTAATGTCGTCTTT 58.613 36.000 3.52 0.00 32.41 2.52
1703 1854 5.950883 TGTCGAATTCTCTAATGTCGTCTT 58.049 37.500 3.52 0.00 32.41 3.01
1705 1856 6.028368 TCTTGTCGAATTCTCTAATGTCGTC 58.972 40.000 3.52 0.00 32.41 4.20
1707 1858 6.143118 GGATCTTGTCGAATTCTCTAATGTCG 59.857 42.308 3.52 0.00 32.10 4.35
1714 1865 4.125703 GCATGGATCTTGTCGAATTCTCT 58.874 43.478 3.52 0.00 0.00 3.10
1715 1866 3.249559 GGCATGGATCTTGTCGAATTCTC 59.750 47.826 3.52 0.00 0.00 2.87
1723 1874 1.133790 GCTGTTGGCATGGATCTTGTC 59.866 52.381 0.00 0.00 41.35 3.18
1725 1876 0.458669 GGCTGTTGGCATGGATCTTG 59.541 55.000 0.00 0.00 44.01 3.02
1743 1894 1.461075 ATCTCTAGCTGCCAGGGGG 60.461 63.158 0.00 0.00 37.18 5.40
1748 1899 2.600439 AGCACATCTCTAGCTGCCA 58.400 52.632 0.00 0.00 37.20 4.92
1787 1938 4.127171 TGCTCACTGTAACTTGAAGTTCC 58.873 43.478 14.64 3.49 39.51 3.62
1791 1942 7.601073 TCATAATGCTCACTGTAACTTGAAG 57.399 36.000 0.00 0.00 0.00 3.02
1797 1948 7.279981 TGGTACATTCATAATGCTCACTGTAAC 59.720 37.037 0.00 0.00 42.69 2.50
1818 1969 7.061326 CGGCTTAAATGTAAAACAACATGGTAC 59.939 37.037 0.00 0.00 39.98 3.34
1819 1970 7.085116 CGGCTTAAATGTAAAACAACATGGTA 58.915 34.615 0.00 0.00 39.98 3.25
1820 1971 5.923684 CGGCTTAAATGTAAAACAACATGGT 59.076 36.000 0.00 0.00 39.98 3.55
1821 1972 5.347364 CCGGCTTAAATGTAAAACAACATGG 59.653 40.000 0.00 0.00 39.98 3.66
1822 1973 6.153067 TCCGGCTTAAATGTAAAACAACATG 58.847 36.000 0.00 0.00 39.98 3.21
1844 1995 3.003480 GACAGAATACACCAAGTGCTCC 58.997 50.000 0.00 0.00 36.98 4.70
1848 1999 7.905604 TCTTTATGACAGAATACACCAAGTG 57.094 36.000 0.00 0.00 39.75 3.16
1886 2041 5.298989 ACACCAACTGGAACAATACAGTA 57.701 39.130 1.86 0.00 46.49 2.74
1904 2059 6.316140 TGCATACATTTCTTGACTGATACACC 59.684 38.462 0.00 0.00 0.00 4.16
1910 2065 7.415877 CCATTCATGCATACATTTCTTGACTGA 60.416 37.037 0.00 0.00 32.87 3.41
1913 2068 5.981315 CCCATTCATGCATACATTTCTTGAC 59.019 40.000 0.00 0.00 32.87 3.18
1928 2083 6.543465 TCTTATTCTTACAGCACCCATTCATG 59.457 38.462 0.00 0.00 0.00 3.07
1929 2084 6.662755 TCTTATTCTTACAGCACCCATTCAT 58.337 36.000 0.00 0.00 0.00 2.57
1930 2085 6.061022 TCTTATTCTTACAGCACCCATTCA 57.939 37.500 0.00 0.00 0.00 2.57
1931 2086 7.391148 TTTCTTATTCTTACAGCACCCATTC 57.609 36.000 0.00 0.00 0.00 2.67
1932 2087 7.961326 ATTTCTTATTCTTACAGCACCCATT 57.039 32.000 0.00 0.00 0.00 3.16
1967 2124 8.850454 AACAACAACTGAACACAATACATTAC 57.150 30.769 0.00 0.00 0.00 1.89
2155 2312 7.908827 TCAACAGCGTACCTTGAATTAATTA 57.091 32.000 0.00 0.00 0.00 1.40
2163 2320 3.119245 GGTAGATCAACAGCGTACCTTGA 60.119 47.826 0.00 0.00 31.99 3.02
2165 2322 2.159282 CGGTAGATCAACAGCGTACCTT 60.159 50.000 0.00 0.00 32.45 3.50
2192 2349 5.587443 TCCTGACTATGAATGTGATTGCTTG 59.413 40.000 0.00 0.00 0.00 4.01
2199 2356 6.427441 ACTAGAGTCCTGACTATGAATGTGA 58.573 40.000 4.75 0.00 42.66 3.58
2209 2366 3.245300 TGGCAGTTACTAGAGTCCTGACT 60.245 47.826 13.41 0.00 45.84 3.41
2295 2452 6.151144 TGAAGCTTGAAAATTAGAACTAGCCC 59.849 38.462 2.10 0.00 33.25 5.19
2316 2474 4.882671 AATCGGATTCGTTGGAATGAAG 57.117 40.909 0.00 0.00 42.86 3.02
2399 2557 1.079543 CTTCCTCCTGCTCACCACG 60.080 63.158 0.00 0.00 0.00 4.94
2414 2572 4.408596 ACAATCTCCTCCTCCATCTTCTTC 59.591 45.833 0.00 0.00 0.00 2.87
2415 2573 4.369872 ACAATCTCCTCCTCCATCTTCTT 58.630 43.478 0.00 0.00 0.00 2.52
2416 2574 4.006247 ACAATCTCCTCCTCCATCTTCT 57.994 45.455 0.00 0.00 0.00 2.85
2453 2615 2.046023 CCCAGAACTGCGATGCCA 60.046 61.111 0.00 0.00 0.00 4.92
2460 2622 2.125350 CGCCTCTCCCAGAACTGC 60.125 66.667 0.00 0.00 0.00 4.40
2462 2624 3.394836 GGCGCCTCTCCCAGAACT 61.395 66.667 22.15 0.00 0.00 3.01
2510 2672 2.490509 CACTGAAGCATTTCCATCTGCA 59.509 45.455 0.00 0.00 40.88 4.41
2520 2682 6.102897 ACTGTAGTCTAACACTGAAGCATT 57.897 37.500 0.00 0.00 36.43 3.56
2656 2818 3.996480 GCTCTAACAGCCGATCCTAATT 58.004 45.455 0.00 0.00 43.17 1.40
2675 2837 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
2676 2838 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
2677 2839 2.906182 TAGCGCGGCTGTTGGAGATG 62.906 60.000 8.83 0.00 40.10 2.90
2678 2840 2.238847 TTAGCGCGGCTGTTGGAGAT 62.239 55.000 8.83 0.00 40.10 2.75
2679 2841 2.835701 CTTAGCGCGGCTGTTGGAGA 62.836 60.000 8.83 0.00 40.10 3.71
2680 2842 2.434185 TTAGCGCGGCTGTTGGAG 60.434 61.111 8.83 0.00 40.10 3.86
2681 2843 2.434185 CTTAGCGCGGCTGTTGGA 60.434 61.111 8.83 0.00 40.10 3.53
2682 2844 4.166011 GCTTAGCGCGGCTGTTGG 62.166 66.667 8.83 0.00 40.10 3.77
2710 2872 0.804156 CACGCGGCAAACAGGTTTTT 60.804 50.000 12.47 0.00 0.00 1.94
2711 2873 1.226831 CACGCGGCAAACAGGTTTT 60.227 52.632 12.47 0.00 0.00 2.43
2712 2874 2.411290 CACGCGGCAAACAGGTTT 59.589 55.556 12.47 0.00 0.00 3.27
2713 2875 4.264638 GCACGCGGCAAACAGGTT 62.265 61.111 12.47 0.00 43.97 3.50
2727 2889 1.847890 TTAAACCAGCCGAAGCGCAC 61.848 55.000 11.47 1.68 46.67 5.34
2728 2890 1.598407 TTAAACCAGCCGAAGCGCA 60.598 52.632 11.47 0.00 46.67 6.09
2729 2891 1.154282 GTTAAACCAGCCGAAGCGC 60.154 57.895 0.00 0.00 46.67 5.92
2730 2892 1.131826 CGTTAAACCAGCCGAAGCG 59.868 57.895 0.00 0.00 46.67 4.68
2731 2893 1.154282 GCGTTAAACCAGCCGAAGC 60.154 57.895 0.00 0.00 40.32 3.86
2732 2894 1.131826 CGCGTTAAACCAGCCGAAG 59.868 57.895 0.00 0.00 0.00 3.79
2733 2895 2.957052 GCGCGTTAAACCAGCCGAA 61.957 57.895 8.43 0.00 0.00 4.30
2734 2896 3.416382 GCGCGTTAAACCAGCCGA 61.416 61.111 8.43 0.00 0.00 5.54
2735 2897 4.454717 GGCGCGTTAAACCAGCCG 62.455 66.667 8.43 0.00 38.28 5.52
2736 2898 4.111016 GGGCGCGTTAAACCAGCC 62.111 66.667 8.43 5.66 46.51 4.85
2737 2899 4.454717 CGGGCGCGTTAAACCAGC 62.455 66.667 15.94 0.00 0.00 4.85
2738 2900 4.454717 GCGGGCGCGTTAAACCAG 62.455 66.667 24.70 1.17 0.00 4.00
2741 2903 4.454717 CAGGCGGGCGCGTTAAAC 62.455 66.667 24.70 7.11 43.06 2.01
2765 2927 2.699576 TTATAGCGCGGCTGCTGGAG 62.700 60.000 22.96 0.14 46.70 3.86
2766 2928 2.099652 ATTATAGCGCGGCTGCTGGA 62.100 55.000 22.96 11.80 46.70 3.86
2767 2929 1.669115 ATTATAGCGCGGCTGCTGG 60.669 57.895 22.96 1.40 46.70 4.85
2768 2930 1.494628 CATTATAGCGCGGCTGCTG 59.505 57.895 22.96 10.42 46.70 4.41
2770 2932 2.174349 GCATTATAGCGCGGCTGC 59.826 61.111 8.83 7.70 40.10 5.25
2771 2933 1.494628 CTGCATTATAGCGCGGCTG 59.505 57.895 8.83 0.53 40.10 4.85
2772 2934 3.957260 CTGCATTATAGCGCGGCT 58.043 55.556 8.83 8.38 43.41 5.52
2778 2940 2.202096 CGCGCGCTGCATTATAGC 60.202 61.111 30.48 6.56 46.97 2.97
2779 2941 2.202096 GCGCGCGCTGCATTATAG 60.202 61.111 44.38 15.91 46.97 1.31
2780 2942 4.058206 CGCGCGCGCTGCATTATA 62.058 61.111 45.97 0.00 46.97 0.98


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.