>input_sequence_68281
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--------------------------------------ATGTCGTTAATTT---------------------------TC
TTCTTCTTCTTCTTCTCCCTCCCCCTCCACCACGCACTGGACCCAGAGAGTTTACTCAATGTTGAGTACAACGTCTCGAG
CCATTCGTTCACCCGCGTGTCTGGCCTTTTGTCTAGGCAGTT--------------------------------------
-------TCTTGCCCCGAGGCGGGCTTTTTTTCAAGCCCGTCCCAACCGGTTTATCATGATAAATATGGTTGACAACGTG
CCTGGGCGTACAGCCACCCTCGCCCTGTGCGACGATGACCTGTACGTCCCGGGCTTCAAAGACACCACTCTCCAGTGGAA
CCATTTCAAACGATTCGAGCCAATCGTGCCTGGCTCCAGGGAACTGCCCTTTGAACACGATTACCCAAACCTTCTTCCCT
TGTTCCCAAACGGCACCAAAAGATCACACATAGACCTGTATGAAGTTCCCTTGGGCAAAGCCGCCACCTTACGTGCATTC
CGGACGTTGGCGAGCTATAATCCTGGCACCACGCCAAGGCCGCACCTTAGATCCGCGCTGGTAACACTAATCGTCACCTT
TTGTGAAGGACACAGATTTGACCAGCTAAACAGACGACTGAAGAACGAGTGGGACAACCCTAGACCAATCTACATGCTTG
AAGAGGAGGCACCGTACGTTGTGCAATGGGGCTCGCTGTCTCGTGCGCTCCAATGGTGGGAGGAGAGTGGTTGCAAAAGT
TGGACCAAGGACAAAGACGACATTAGAGAATTCGACAAGATCCATGCCAACAGCCCCCTGGCAGCTAGAGATGTGCTGCT
CTTCTTACAAAGGACCAGGAACTTCAAGTTACAGTGA-------------------------------------------
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>chr4A_1_TraesCS4A01G288900
TTGCATGACGAACTGAAATCACCGCCCAGGTGCAACTTTCTCTTTTGCATTGGGCACAGCGACGGAAGCACCGGAGGCAG
CGGCGACATAGACGGCGGTCGAGGTGCTGGGAACCGTCCCCGCCGGGCAGCAGGATGCGGTGGTGGAGACGCCGAAGCCG
TGGGCTTCCGCCTGCCCTTGTTCTTCTTGCCCGACAAGACGACGCGCCGGAAGTATGGGCGGCCTGGAATGTACCCGTGG
CTGTGGCACCACAACTTGCCGGCACA-----------GAAGATGGGGTGACGCGCCGGCACACCGGAGCGGGGCGGCCCC
GACGCTGGGCAGAAGCCGACCACCCACAGTTGCTTGCTGAACAGTGGTAGC---CCCGGGAGCCACCGC-------GCAG
GCGCAGAGCGGGAGGCGACGGGACCGGTCGTAGGTGGGGGCCCGGAGCTGCTGCAGGCAGGAGGCGCCGTTCCTGTCAGA
GAGCGCGGGAAGGGACGGCGGA-------------CGTGGAGCTGCGCGACGAGGAGGCGGAAAGCGGTAGGGCCTCGTC
ACCATGCACGGCGCCGGCAACGAGGACGTTGCAGCCGGACACGCATGCCGGCGGGAATTCTCCAAGCGCCACCGGCGG--
TGACCCAAGGTCGAGGGAGAGGTCCGCGCCATGGTCGTCTCGTCTCCGGATGCGGCCAAGCCCCTTGCTAGCCGTAGGCG
AGGAGGAAGAACGAGCTAGCTCGCGGATCTCCCTCTTCCATGTCCGGGCGAGAAGGTGACGGCGGTGAAGAAGATGGCAG
GCGCAATGGCCCTCCCTCGTCCTCGACAGACCTAACACCCTGACAACGACACGCTTG---GCACCTACACTGTTCGTTAC
ACCAAAAAAACCACACTTCT-------------------------------TGGCCTCTCGTTTTCTTGTTTTCACACTT
CTTGGCAGGCGCTG--------TTGAGATGGCACCATCACCACATAAATAGAATAGTGTTGATCCGAGTCTCCCTCAGTG
CATCATAGTCACTGGTGCACCACACACTTCACTTCACCATGTCGTTAATTT---------------------------TC
TTCTTCTTCTTCTTCTCCCTCCCCCTCCACCACGCACTGGACCCAGAGAGTTTACTCAATGTTGAGTACAACGTCTCGAG
CCATTCGTTCACCCGCGTGTCTGGCCTTTTGTCTAGGCAGTT--------------------------------------
-------TCTTGCCCCGAGGCGGGCTTTTTTTCAAGCCCGTCCCAACCGGTTTATCATGATAAATATGGTTGACAACGTG
CCTGGGCGTACAGCCACCCTCGCCCTGTGCGACGATGACCTGTACGTCCCGGGCTTCAAAGACACCACTCTCCAGTGGAA
CCATTTCAAACGATTCGAGCCAATCGTGCCTGGCTCCAGGGAACTGCCCTTTGAACACGATTACCCAAACCTTCTTCCCT
TGTTCCCAAACGGCACCAAAAGATCACACATAGACCTGTATGAAGTTCCCTTGGGCAAAGCCGCCACCTTACGTGCATTC
CGGACGTTGGCGAGCTATAATCCTGGCACCACGCCAAGGCCGCACCTTAGATCCGCGCTGGTAACACTAATCGTCACCTT
TTGTGAAGGACACAGATTTGACCAGCTAAACAGACGACTGAAGAACGAGTGGGACAACCCTAGACCAATCTACATGCTTG
AAGAGGAGGCACCGTACGTTGTGCAATGGGGCTCGCTGTCTCGTGCGCTCCAATGGTGGGAGGAGAGTGGTTGCAAAAGT
TGGACCAAGGACAAAGACGACATTAGAGAATTCGACAAGATCCATGCCAACAGCCCCCTGGCAGCTAGAGATGTGCTGCT
CTTCTTACAAAGGACCAGGAACTTCAAGTTACAGTGAGCATTATGAATGTACCATGTTGTTTTACATTTAAGCCGGAGCA
CTTGGTGTATTCTGTCAT----AAAGAAATGTACTAGTAGTACTGTATTGTTCCAGTTGGTGTATCAGTCAAGAAATGTA
TGCATGAATGGGTGCTGTAAGAATAAG--AAATATATAAATATGTAATGTATTGTGTTCAGTTGTTGTTTGAGAATATAT
ATATAAGTCGGTGTATGGGTTGTACAGTTACTACTACTAGTTGTATGTGCCGAATGCCACGTTTCTCTTCTTCCATGTCC
TTTATGCTACCCGTCTATCCCTGTCCAATTATGATATCCGTCTATCTTTGATGTGTACGACATAGCTGTTATAATTAATT
CAAGGTACGCTGTTGATCTACCGAGAAACAAGCAATCACATTCATAGTCAGGACTCTAGTAACTGCCAATAGAATTGTGG
TTCAAAGGTTTTGTATCATGTATCAGTAATATAAGAAAAGAACAAAACTATGGGCTAGTTCTAA-TTTTCAAGCTTCATT
CCAACGAATCCGATTTATTTATAGATATACATTAGATGAACAGCTTCATTCGCGAGGATAACCCGGAGTGGACTCCCGTG
GTGAGCAGGAGGAAGAAGATGGAGGAGGAGATTGTAGCAGTTCT----CGACGCTGGCATCGCAGTTCTGGGAGAGGCGC
CATCTTCGTCGCCGGGAACACCTTCTGAAGTTGCAGATGGAAATGCTTCAGTGTTAGACTACAGTTAGTTAGTTAGTCTA
CCAGTGTGATCAAATAAAACTCTTTTTAACCTCGCCAAAAAAAAAGTCAGCCTTATCTTGTGCATGCGCCATGCATGCAG
CCGCCTCACTCACGTAGAATTAGGATCGGCTGTTAGAGCATCTCCAACAGCCGCGCTAAGCGCCGCGCGCAAAAAACCTG
TTTGCCGCGTGCGCTTCGGCTGGTTTAACGCGCCCGCCTGCGCTGGCTCCAGCAGCCGCGCTATAATGCAGCGCGCGCGC
CGCTCCAG
>chr4D_18
ATCGCCGCT-----------------CAGGTGCAACTTTCTCTTTTGCATTGGGCACAGCGACGGGAGCACCGGGGGCAG
CGGCGACATAGACGGCGGTCGAGGTGCTGGGAACCGTCGCCGCCGGGCAGCAGGGTGCGGTGGTGGAGACGCCGAAGCCG
TGGGCTTGCGCCTGCCCTTGTTCTTCTTGCCCGACAAGACGACGCGCCGGAAGTATGGGCGGCCTGGAATGTACCCGTGG
CTGTGGCACCACAACTCGCCGGCACAGAAGTGACCGGGAAGACGGGGTGACGCGCCGGCACACCGGAGCGGGGCGGCCCA
GACGATGGGCAGAAGCTGGCCACCCACAGCTGCGTGCTGAACAGTGGTAGCCCGCCCGGGAGCCACCGCCCGGTTGGCAG
GCGCAGAGCGGGAGGCGACGGGACCGGTCGTAGGTGGGGGCCCGGAGCTGCTGCAGGCAGGAGGCGCCGCTCCTGTCAGA
GAGCGCGGGAAGGGACGGCGGAGGGCATCGGCGGACGTGGAGCTGCGCGACGAGGAGGCGAAAACCGGTAGGGCTTCGTC
ACCATGCACGGCGCCGGCAACGAGGACGGTGCAGCCGGACACGCATGCCGGCGGGAATTCTCCGAGCGCCACGGGCGGCA
TGACCCAAGGTTGAGGGAGGGGTCCGCGCCATGGTCGTCTCGTCTCCGGATGCGGCCAAGCCCCTTGCTAGCCGTAGGCG
AGGAGGAAGAACGAGCT----CGCGGATCTCCCTCTTCCATGTCCGGGCGAGAAGGTGACGGCGGTGAAGAAGATGGCAG
GCGAAATGGCCCTCCCTCGTCCTCGACAGACCTAACACCCCGACAACGACACGCTTGTTGGCACCTACACTGTTCGTTAC
ACCCAAAAAATCACACTTCTTGGCCTCTCCTTTTCTTGTTTTCACACTTCTTGGCCTCTCCTTTTCTTGTTTTCACACTT
CTTGGCAGGCGCGGTTGAGAACTTGAGATGGCACCATCACCACATAAATAGAA--GTGTTGATCCGTGTCTCCTTCAGTG
CACCATAGTCACTGGTGCACCACACACTTCACTTCACCATGTCGTTAATTTGCCGCATTCTTTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTCCCTCCCCTTCCACCACGCACTAGACCCAGTCAATGTACTGAATGTACAATATAATGTCTCGAG
CGACTCGTTCACCGGCGTGTCTGGCCTTTTGTCTAGGCAGTTCGTAGCGTACAGTCGCAACCCACCACAGGTTCTGTTGC
GCAGGTTTCTTGCCCCACGGCGGCCTGATTTCGAAGCCCTTCCTAACCGGTTTATCATGATAAACATGGTTGACAACGTG
CCTGGGCGTACAGCCACCCTCGCCCTGTGCGACGATGACCTGTACGTCCCGGGTTTCAAAGATACCACTCTCCAGTGGAA
CCATTTCAGAAGATTCGAGCCAATCGTGCCTGGCTCCAGGGAACTGCCCGTTCACCACACTTACCCAGAGCTTCTGCCAT
TGTTCCCAAACGGCAGCAGAATGTCACACCTGCAACTGCATCTAGTACCCTTGGGCAAAGCTGCCACCTTGGGTGCATTC
CGGACGTTGGCAAACTATAATCCTCGCACCACGCCAAGGAAGGACCTTAGGTCCGCGCTGGTAACACTAATCGTCACCTT
TAGTGAAGGACACAGATTTGATCAGCTAAACAGACGACTGAAGAACGAGTGGGACAACGCTCGACCAATCTACATGCTTG
AAGAGGAGGCACCGTACGTTGTACATTGGGGTTCGCTGTCTCGTGCGCTCCAATGGTGGGAGGAGAGTGGTCGCAAAAGT
TGGACCAATAGTCCACAGGACATTGCAGAATTCAAAAAGATCCATGCCAACAGTCCCCAGGCAGCTAGAGATGTGCTGCT
CTTCTTACAAAGGACCATGAAATTCAATTTATAGATGTAGTACT---------ATGTTGTTTTACATTTAAGCCAGAGTA
CTTGATGTATTCTGTTAATTACAAAGAAATGTACTAGTAGAACTGTATTGTTCCAGTTAGTGTACCAATCAAGAAATGTA
TGG----ATGGATGCTGTAAGAATAAAAAAAATGTATGAATATATAATGTATTGTGTTCAGTTGTTGTTTGAGAATATAT
ATATAAGTCGGTGTATGGGCTGTACAGTTACTACTACTAGTTGTATGTGCCGAATGCCACGTTTCTCTTCTTCCATGTCC
TTTATGCTACCCGTCTATCCCTGTCCAATTATGATATCCGTCTATCTTTGATGTGTACGGCGCAGCTGTTAGAATTAATC
CGAGGTACGCTGTTGATCTACCGAGAAATAAGCAAACACATTCATGGTCAGGACTCTAGTAACTGCCAATAGAATTGTGG
TTCAAAGGTTTTGTATCATGCATCAGTAATATAAGAAAACAACGAAACTATAGGCTAGTTCTAATTTTTCAAGTTTCATT
CCAACGAATCTGATTTATTTATAGATATACATTAGATGAACAGCTTCATTCGCGAGGATAACCCGGAGTGGACTCCGGTG
GTGAGCAGGAG---GAAGATGGAGGAGGAGATTGTAGCAGTTCTGGATCGACGCCGGCATCACGGTTCTGGGAGAGGCAC
CATCTTCGTCGCCGGGAACACCTTCTGAAGTCGCAGATGGAGATGCTTCAGTGTAAGACTACAGTTAGTTAGCTAGTCTA
CCGGTGTGATCAAATAAAACTCTTTTTAACCTCGC-AAAAAAAAAGTCAGCCTTATCTTGTGCATGCGCCATGCATGCAG
CCGCCTCACTCACGTAGGATTAGGATCGGCTGTTAG--------------------------------------------
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>SNPs
S-SSSS-SSSSSSSSSSSSSSSSSSS---------------------------------------S--------S-----
--------------------------------------S---------------S-------------------------
-------S------------------------------------------------------------------------
----------------S-------------------------S------------------------------------S
----S-----------S-S----------S---S----------------------------------------------
---------------------------------------------------------------------S----------
------------------------------------------------------------S---S---------S-----
----------------------------S----------------------------------S--------S-------
-----------S-------S------------------------------------------------------------
-----------------SSSS-----------------------------------------------------------
---S------------------------------------S---------------------------------------
---S------S-------------------------------------------------S-------------------
------------S----------------------------------------SS-----------S------S------
--S-----------------------------------------------------------------------------
------------------------S-------------S-------SS-S-S----S-----SS-S--S--S--------
-S-S---------S------------------------------------------------------------------
----------------SS-----S--SS---SS------S---S--------------------S---------------
-----------------------------------------------------S--------S-----------------
--------S-S--------------------------------------S--S-S---SS-------S-S-----S--S-
---------------S--S--SS------S-SS-S---S--SS---S--------------S--------SS--------
-----------S-S----------S--------------SS-S-------S-----------------------------
-S-------------------S------------------------------------S--S------------------
----------------------S--S-----S---------------------------------------S--------
--------SSSSSS-S-S------SS-------S-S-----------------S----S---------------------
-----------------S---S-----S---S--SSSSSS-SS-SSSSSSSSS---------------------S---S-
----S----------S-S----------------------S-----------------S-----S--S------------
--SSSSS----S--------------S------S---S-----S------------------------------------
-------------------S------------------------------------------------------------
-----------------------------------------------------------S-SS--------S-------S
-S--------------------------S------S---------S----------------------------------
--------------------S------------------S---S-------S---------------------S------
----------S-----------------------------------------------------------------S---
-----------SSS----------------------------------------S------S-S--------------S-
-------------------------------S---------S------------S-----------------S-------
--S--------------------------------S--------------------------------------------
-----------------S------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS
>forward_283
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-----------------------AACTTGCCGGCACAGAAGAT-------------------------------------
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>reverse_1876
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-----------------------------------CAAGATCCATGCCAACAGCC-------------------------
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>forward_1832
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----------------------------------------------------ATGGTGGGAGGAGAGTGGTT--------
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>reverse_2872
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-----------------------------------------------------------------------AAAAACCTG
TTTGCCGCGTG---------------------------------------------------------------------
--------
