Multiple sequence alignment - TraesCS4A01G269000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G269000 chr4A 100.000 2243 0 0 1 2243 581149955 581152197 0.000000e+00 4143
1 TraesCS4A01G269000 chr4A 93.182 132 7 2 2114 2243 354405236 354405367 2.270000e-45 193
2 TraesCS4A01G269000 chr4D 87.350 1581 138 28 587 2122 20536181 20534618 0.000000e+00 1755
3 TraesCS4A01G269000 chr4D 92.000 150 12 0 4 153 20538914 20538765 6.280000e-51 211
4 TraesCS4A01G269000 chr4B 87.343 877 46 30 593 1416 32487594 32486730 0.000000e+00 944
5 TraesCS4A01G269000 chr4B 80.761 473 76 11 1645 2107 645310467 645310934 2.740000e-94 355
6 TraesCS4A01G269000 chr4B 95.181 166 6 2 4 168 32487817 32487653 6.140000e-66 261
7 TraesCS4A01G269000 chr4B 96.923 65 2 0 284 348 32487654 32487590 2.360000e-20 110
8 TraesCS4A01G269000 chr4B 83.740 123 8 5 4 120 94044069 94043953 3.050000e-19 106
9 TraesCS4A01G269000 chr4B 83.740 123 8 5 4 120 637163112 637163228 3.050000e-19 106
10 TraesCS4A01G269000 chr1B 81.967 488 79 9 1641 2120 161986948 161987434 2.680000e-109 405
11 TraesCS4A01G269000 chr1B 85.714 105 8 4 4 107 15195127 15195029 1.100000e-18 104
12 TraesCS4A01G269000 chr1B 86.139 101 7 4 5 104 492594036 492593942 3.940000e-18 102
13 TraesCS4A01G269000 chr1B 82.927 123 9 5 4 120 603892917 603893033 1.420000e-17 100
14 TraesCS4A01G269000 chr5D 82.180 477 76 6 1651 2119 466585179 466585654 3.470000e-108 401
15 TraesCS4A01G269000 chr5D 81.481 486 74 10 1633 2108 521097561 521097082 3.490000e-103 385
16 TraesCS4A01G269000 chr7D 79.049 568 105 9 1564 2120 227297059 227296495 5.850000e-101 377
17 TraesCS4A01G269000 chr3D 80.677 502 83 12 1623 2114 571991355 571990858 5.850000e-101 377
18 TraesCS4A01G269000 chr3D 93.130 131 7 2 2114 2243 401346857 401346728 8.180000e-45 191
19 TraesCS4A01G269000 chr3B 79.213 534 92 16 1548 2069 642817556 642818082 9.850000e-94 353
20 TraesCS4A01G269000 chr3B 78.147 572 106 14 1562 2122 242754867 242754304 1.650000e-91 346
21 TraesCS4A01G269000 chr3B 80.769 156 18 8 4 153 246889690 246889541 6.550000e-21 111
22 TraesCS4A01G269000 chr3B 80.769 156 18 5 4 153 824085033 824085182 6.550000e-21 111
23 TraesCS4A01G269000 chr6A 96.721 122 2 2 2123 2243 493766190 493766070 3.780000e-48 202
24 TraesCS4A01G269000 chr6A 95.902 122 3 2 2123 2243 231363377 231363257 1.760000e-46 196
25 TraesCS4A01G269000 chr6A 95.902 122 4 1 2123 2243 263697288 263697167 1.760000e-46 196
26 TraesCS4A01G269000 chr6A 94.488 127 5 2 2118 2243 54759001 54758876 6.320000e-46 195
27 TraesCS4A01G269000 chr7B 95.902 122 3 2 2123 2243 433424711 433424831 1.760000e-46 196
28 TraesCS4A01G269000 chr7B 82.051 156 16 5 4 153 365276831 365276980 3.030000e-24 122
29 TraesCS4A01G269000 chr5A 95.902 122 4 1 2123 2243 401968751 401968630 1.760000e-46 196
30 TraesCS4A01G269000 chr1D 95.902 122 4 1 2123 2243 321876189 321876310 1.760000e-46 196
31 TraesCS4A01G269000 chr2B 86.905 168 19 3 396 562 529692415 529692250 3.800000e-43 185
32 TraesCS4A01G269000 chr6B 82.051 156 16 6 4 153 2325688 2325539 3.030000e-24 122
33 TraesCS4A01G269000 chr6B 82.051 156 16 5 4 153 208793683 208793832 3.030000e-24 122
34 TraesCS4A01G269000 chr6B 83.740 123 8 5 4 120 177350072 177350188 3.050000e-19 106
35 TraesCS4A01G269000 chr6B 82.927 123 9 5 4 120 677105865 677105749 1.420000e-17 100
36 TraesCS4A01G269000 chr5B 81.410 156 17 5 4 153 431373012 431373161 1.410000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G269000 chr4A 581149955 581152197 2242 False 4143.000000 4143 100.000 1 2243 1 chr4A.!!$F2 2242
1 TraesCS4A01G269000 chr4D 20534618 20538914 4296 True 983.000000 1755 89.675 4 2122 2 chr4D.!!$R1 2118
2 TraesCS4A01G269000 chr4B 32486730 32487817 1087 True 438.333333 944 93.149 4 1416 3 chr4B.!!$R2 1412
3 TraesCS4A01G269000 chr7D 227296495 227297059 564 True 377.000000 377 79.049 1564 2120 1 chr7D.!!$R1 556
4 TraesCS4A01G269000 chr3B 642817556 642818082 526 False 353.000000 353 79.213 1548 2069 1 chr3B.!!$F1 521
5 TraesCS4A01G269000 chr3B 242754304 242754867 563 True 346.000000 346 78.147 1562 2122 1 chr3B.!!$R1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
421 632 0.106819 AAGTGCATGAGGAGGGCATC 60.107 55.0 0.0 0.0 40.05 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 4072 0.322322 TACGAATGGGAAACAGCGGT 59.678 50.0 0.0 0.0 35.79 5.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
143 144 6.263754 AGGGTTAGTTGGGATTCAATTCAAT 58.736 36.000 0.00 0.00 37.73 2.57
147 148 8.260114 GGTTAGTTGGGATTCAATTCAATCAAT 58.740 33.333 4.36 0.00 37.73 2.57
189 199 5.922739 TTACGCATATCAATCCATGACAC 57.077 39.130 0.00 0.00 41.93 3.67
192 202 4.274214 ACGCATATCAATCCATGACACAAG 59.726 41.667 0.00 0.00 41.93 3.16
196 206 6.474427 GCATATCAATCCATGACACAAGTTTG 59.526 38.462 0.00 0.00 41.93 2.93
198 208 8.676401 CATATCAATCCATGACACAAGTTTGTA 58.324 33.333 0.00 0.00 41.93 2.41
199 209 7.707624 ATCAATCCATGACACAAGTTTGTAT 57.292 32.000 0.00 0.00 41.93 2.29
200 210 6.912082 TCAATCCATGACACAAGTTTGTATG 58.088 36.000 0.00 0.00 34.42 2.39
201 211 6.714356 TCAATCCATGACACAAGTTTGTATGA 59.286 34.615 0.00 0.00 34.42 2.15
203 213 7.707624 ATCCATGACACAAGTTTGTATGATT 57.292 32.000 0.00 0.00 39.91 2.57
204 214 7.523293 TCCATGACACAAGTTTGTATGATTT 57.477 32.000 0.00 0.00 39.91 2.17
205 215 7.592938 TCCATGACACAAGTTTGTATGATTTC 58.407 34.615 0.00 0.00 39.91 2.17
206 216 7.448161 TCCATGACACAAGTTTGTATGATTTCT 59.552 33.333 0.00 0.00 39.91 2.52
207 217 7.539710 CCATGACACAAGTTTGTATGATTTCTG 59.460 37.037 0.00 0.00 39.91 3.02
208 218 7.800155 TGACACAAGTTTGTATGATTTCTGA 57.200 32.000 0.00 0.00 39.91 3.27
209 219 7.639039 TGACACAAGTTTGTATGATTTCTGAC 58.361 34.615 0.00 0.00 39.91 3.51
212 222 8.077991 ACACAAGTTTGTATGATTTCTGACATG 58.922 33.333 0.00 0.00 39.91 3.21
213 223 8.077991 CACAAGTTTGTATGATTTCTGACATGT 58.922 33.333 0.00 0.00 39.91 3.21
214 224 8.632679 ACAAGTTTGTATGATTTCTGACATGTT 58.367 29.630 0.00 0.00 40.16 2.71
215 225 9.467258 CAAGTTTGTATGATTTCTGACATGTTT 57.533 29.630 0.00 0.00 0.00 2.83
216 226 9.683069 AAGTTTGTATGATTTCTGACATGTTTC 57.317 29.630 0.00 0.00 0.00 2.78
218 228 9.121517 GTTTGTATGATTTCTGACATGTTTCTG 57.878 33.333 0.00 0.00 0.00 3.02
219 229 6.845302 TGTATGATTTCTGACATGTTTCTGC 58.155 36.000 0.00 0.00 0.00 4.26
220 230 4.771590 TGATTTCTGACATGTTTCTGCC 57.228 40.909 0.00 0.00 0.00 4.85
221 231 4.143543 TGATTTCTGACATGTTTCTGCCA 58.856 39.130 0.00 0.00 0.00 4.92
222 232 4.583907 TGATTTCTGACATGTTTCTGCCAA 59.416 37.500 0.00 0.00 0.00 4.52
223 233 5.244402 TGATTTCTGACATGTTTCTGCCAAT 59.756 36.000 0.00 0.00 0.00 3.16
227 237 4.696877 TCTGACATGTTTCTGCCAATGTAG 59.303 41.667 0.00 0.00 0.00 2.74
228 238 3.191162 TGACATGTTTCTGCCAATGTAGC 59.809 43.478 0.00 0.00 0.00 3.58
230 240 3.765511 ACATGTTTCTGCCAATGTAGCAT 59.234 39.130 0.00 0.00 40.04 3.79
231 241 3.853831 TGTTTCTGCCAATGTAGCATG 57.146 42.857 0.00 0.00 40.04 4.06
233 243 3.191162 TGTTTCTGCCAATGTAGCATGTC 59.809 43.478 0.00 0.00 40.04 3.06
234 244 2.785540 TCTGCCAATGTAGCATGTCA 57.214 45.000 0.00 0.00 40.04 3.58
235 245 3.286329 TCTGCCAATGTAGCATGTCAT 57.714 42.857 0.00 0.00 40.04 3.06
236 246 3.623703 TCTGCCAATGTAGCATGTCATT 58.376 40.909 0.00 1.12 40.04 2.57
237 247 4.018490 TCTGCCAATGTAGCATGTCATTT 58.982 39.130 9.12 0.00 40.04 2.32
238 248 4.463539 TCTGCCAATGTAGCATGTCATTTT 59.536 37.500 9.12 0.00 40.04 1.82
240 250 4.021280 TGCCAATGTAGCATGTCATTTTGT 60.021 37.500 9.12 0.00 34.69 2.83
241 251 4.327898 GCCAATGTAGCATGTCATTTTGTG 59.672 41.667 9.12 2.27 32.85 3.33
242 252 5.712004 CCAATGTAGCATGTCATTTTGTGA 58.288 37.500 9.12 0.00 32.85 3.58
243 253 6.157904 CCAATGTAGCATGTCATTTTGTGAA 58.842 36.000 9.12 0.00 38.90 3.18
246 256 8.549548 CAATGTAGCATGTCATTTTGTGAAAAA 58.450 29.630 9.12 0.00 38.90 1.94
247 257 7.697352 TGTAGCATGTCATTTTGTGAAAAAG 57.303 32.000 0.00 0.00 38.90 2.27
250 260 9.410556 GTAGCATGTCATTTTGTGAAAAAGTAT 57.589 29.630 0.00 0.00 38.90 2.12
251 261 8.891671 AGCATGTCATTTTGTGAAAAAGTATT 57.108 26.923 0.00 0.00 38.90 1.89
273 283 3.746045 TGACAGTTTCTACAGTCACCC 57.254 47.619 0.00 0.00 43.30 4.61
274 284 2.367567 TGACAGTTTCTACAGTCACCCC 59.632 50.000 0.00 0.00 43.30 4.95
275 285 1.697982 ACAGTTTCTACAGTCACCCCC 59.302 52.381 0.00 0.00 0.00 5.40
276 286 1.697432 CAGTTTCTACAGTCACCCCCA 59.303 52.381 0.00 0.00 0.00 4.96
277 287 1.978580 AGTTTCTACAGTCACCCCCAG 59.021 52.381 0.00 0.00 0.00 4.45
278 288 1.975680 GTTTCTACAGTCACCCCCAGA 59.024 52.381 0.00 0.00 0.00 3.86
279 289 2.572104 GTTTCTACAGTCACCCCCAGAT 59.428 50.000 0.00 0.00 0.00 2.90
282 292 4.069312 TCTACAGTCACCCCCAGATTAA 57.931 45.455 0.00 0.00 0.00 1.40
319 329 3.325870 TGATAACAAGCTTGAGACGGTG 58.674 45.455 32.50 4.69 0.00 4.94
343 554 4.084011 AGATTCAGCTTGCTCCTATTCC 57.916 45.455 0.00 0.00 0.00 3.01
344 555 3.715834 AGATTCAGCTTGCTCCTATTCCT 59.284 43.478 0.00 0.00 0.00 3.36
345 556 4.904251 AGATTCAGCTTGCTCCTATTCCTA 59.096 41.667 0.00 0.00 0.00 2.94
346 557 5.367937 AGATTCAGCTTGCTCCTATTCCTAA 59.632 40.000 0.00 0.00 0.00 2.69
347 558 4.679373 TCAGCTTGCTCCTATTCCTAAG 57.321 45.455 0.00 0.00 0.00 2.18
349 560 4.343526 TCAGCTTGCTCCTATTCCTAAGAG 59.656 45.833 0.00 0.00 0.00 2.85
364 575 3.805267 GAGCATCTCCAGCCGTTG 58.195 61.111 0.00 0.00 0.00 4.10
365 576 2.437359 AGCATCTCCAGCCGTTGC 60.437 61.111 0.00 0.00 37.95 4.17
366 577 2.747460 GCATCTCCAGCCGTTGCA 60.747 61.111 0.00 0.00 41.13 4.08
367 578 2.758089 GCATCTCCAGCCGTTGCAG 61.758 63.158 0.00 0.00 41.13 4.41
368 579 2.437359 ATCTCCAGCCGTTGCAGC 60.437 61.111 0.00 0.00 41.13 5.25
369 580 3.984193 ATCTCCAGCCGTTGCAGCC 62.984 63.158 0.00 0.00 41.13 4.85
376 587 4.659172 CCGTTGCAGCCCCCAAGA 62.659 66.667 0.00 0.00 0.00 3.02
380 591 0.960861 GTTGCAGCCCCCAAGAGTAC 60.961 60.000 0.00 0.00 0.00 2.73
381 592 1.133809 TTGCAGCCCCCAAGAGTACT 61.134 55.000 0.00 0.00 0.00 2.73
382 593 0.252513 TGCAGCCCCCAAGAGTACTA 60.253 55.000 0.00 0.00 0.00 1.82
383 594 0.178301 GCAGCCCCCAAGAGTACTAC 59.822 60.000 0.00 0.00 0.00 2.73
384 595 0.831307 CAGCCCCCAAGAGTACTACC 59.169 60.000 0.00 0.00 0.00 3.18
385 596 0.416231 AGCCCCCAAGAGTACTACCA 59.584 55.000 0.00 0.00 0.00 3.25
388 599 1.209747 CCCCCAAGAGTACTACCAAGC 59.790 57.143 0.00 0.00 0.00 4.01
389 600 1.209747 CCCCAAGAGTACTACCAAGCC 59.790 57.143 0.00 0.00 0.00 4.35
390 601 1.906574 CCCAAGAGTACTACCAAGCCA 59.093 52.381 0.00 0.00 0.00 4.75
391 602 2.304761 CCCAAGAGTACTACCAAGCCAA 59.695 50.000 0.00 0.00 0.00 4.52
392 603 3.244770 CCCAAGAGTACTACCAAGCCAAA 60.245 47.826 0.00 0.00 0.00 3.28
393 604 4.003648 CCAAGAGTACTACCAAGCCAAAG 58.996 47.826 0.00 0.00 0.00 2.77
394 605 3.336138 AGAGTACTACCAAGCCAAAGC 57.664 47.619 0.00 0.00 40.32 3.51
395 606 2.000447 GAGTACTACCAAGCCAAAGCG 59.000 52.381 0.00 0.00 46.67 4.68
396 607 1.621814 AGTACTACCAAGCCAAAGCGA 59.378 47.619 0.00 0.00 46.67 4.93
397 608 2.038033 AGTACTACCAAGCCAAAGCGAA 59.962 45.455 0.00 0.00 46.67 4.70
398 609 1.975660 ACTACCAAGCCAAAGCGAAA 58.024 45.000 0.00 0.00 46.67 3.46
399 610 2.514803 ACTACCAAGCCAAAGCGAAAT 58.485 42.857 0.00 0.00 46.67 2.17
401 612 3.689649 ACTACCAAGCCAAAGCGAAATAG 59.310 43.478 0.00 0.00 46.67 1.73
402 613 2.790433 ACCAAGCCAAAGCGAAATAGA 58.210 42.857 0.00 0.00 46.67 1.98
403 614 3.153919 ACCAAGCCAAAGCGAAATAGAA 58.846 40.909 0.00 0.00 46.67 2.10
404 615 3.191371 ACCAAGCCAAAGCGAAATAGAAG 59.809 43.478 0.00 0.00 46.67 2.85
405 616 3.191371 CCAAGCCAAAGCGAAATAGAAGT 59.809 43.478 0.00 0.00 46.67 3.01
406 617 4.161333 CAAGCCAAAGCGAAATAGAAGTG 58.839 43.478 0.00 0.00 46.67 3.16
407 618 2.162408 AGCCAAAGCGAAATAGAAGTGC 59.838 45.455 0.00 0.00 46.67 4.40
408 619 2.095263 GCCAAAGCGAAATAGAAGTGCA 60.095 45.455 0.00 0.00 0.00 4.57
410 621 4.100529 CCAAAGCGAAATAGAAGTGCATG 58.899 43.478 0.00 0.00 0.00 4.06
411 622 4.142622 CCAAAGCGAAATAGAAGTGCATGA 60.143 41.667 0.00 0.00 0.00 3.07
412 623 4.871993 AAGCGAAATAGAAGTGCATGAG 57.128 40.909 0.00 0.00 0.00 2.90
413 624 3.201290 AGCGAAATAGAAGTGCATGAGG 58.799 45.455 0.00 0.00 0.00 3.86
416 627 3.806521 CGAAATAGAAGTGCATGAGGAGG 59.193 47.826 0.00 0.00 0.00 4.30
417 628 3.853355 AATAGAAGTGCATGAGGAGGG 57.147 47.619 0.00 0.00 0.00 4.30
418 629 0.833287 TAGAAGTGCATGAGGAGGGC 59.167 55.000 0.00 0.00 0.00 5.19
419 630 1.203441 AGAAGTGCATGAGGAGGGCA 61.203 55.000 0.00 0.00 34.70 5.36
421 632 0.106819 AAGTGCATGAGGAGGGCATC 60.107 55.000 0.00 0.00 40.05 3.91
423 634 0.106819 GTGCATGAGGAGGGCATCTT 60.107 55.000 0.00 0.00 40.05 2.40
424 635 0.627451 TGCATGAGGAGGGCATCTTT 59.373 50.000 0.00 0.00 31.58 2.52
425 636 1.316651 GCATGAGGAGGGCATCTTTC 58.683 55.000 0.00 0.00 0.00 2.62
426 637 1.978454 CATGAGGAGGGCATCTTTCC 58.022 55.000 0.00 0.00 0.00 3.13
427 638 1.213678 CATGAGGAGGGCATCTTTCCA 59.786 52.381 0.00 0.00 33.32 3.53
428 639 0.914644 TGAGGAGGGCATCTTTCCAG 59.085 55.000 0.00 0.00 33.32 3.86
429 640 0.465278 GAGGAGGGCATCTTTCCAGC 60.465 60.000 0.00 0.00 33.32 4.85
435 646 1.885871 GCATCTTTCCAGCCACACC 59.114 57.895 0.00 0.00 0.00 4.16
436 647 1.598701 GCATCTTTCCAGCCACACCC 61.599 60.000 0.00 0.00 0.00 4.61
438 649 1.281867 CATCTTTCCAGCCACACCCTA 59.718 52.381 0.00 0.00 0.00 3.53
439 650 1.668826 TCTTTCCAGCCACACCCTAT 58.331 50.000 0.00 0.00 0.00 2.57
440 651 1.559682 TCTTTCCAGCCACACCCTATC 59.440 52.381 0.00 0.00 0.00 2.08
441 652 0.623723 TTTCCAGCCACACCCTATCC 59.376 55.000 0.00 0.00 0.00 2.59
442 653 1.279025 TTCCAGCCACACCCTATCCC 61.279 60.000 0.00 0.00 0.00 3.85
445 656 0.394352 CAGCCACACCCTATCCCAAC 60.394 60.000 0.00 0.00 0.00 3.77
446 657 1.076995 GCCACACCCTATCCCAACC 60.077 63.158 0.00 0.00 0.00 3.77
448 659 0.701731 CCACACCCTATCCCAACCAA 59.298 55.000 0.00 0.00 0.00 3.67
449 660 1.076350 CCACACCCTATCCCAACCAAA 59.924 52.381 0.00 0.00 0.00 3.28
451 662 3.235200 CACACCCTATCCCAACCAAAAA 58.765 45.455 0.00 0.00 0.00 1.94
452 663 3.837731 CACACCCTATCCCAACCAAAAAT 59.162 43.478 0.00 0.00 0.00 1.82
453 664 4.285775 CACACCCTATCCCAACCAAAAATT 59.714 41.667 0.00 0.00 0.00 1.82
454 665 4.910913 ACACCCTATCCCAACCAAAAATTT 59.089 37.500 0.00 0.00 0.00 1.82
455 666 5.221823 ACACCCTATCCCAACCAAAAATTTG 60.222 40.000 0.00 0.00 37.90 2.32
457 668 6.014156 CACCCTATCCCAACCAAAAATTTGTA 60.014 38.462 5.27 0.00 36.45 2.41
458 669 6.559157 ACCCTATCCCAACCAAAAATTTGTAA 59.441 34.615 5.27 0.00 36.45 2.41
459 670 7.072581 ACCCTATCCCAACCAAAAATTTGTAAA 59.927 33.333 5.27 0.00 36.45 2.01
460 671 7.606073 CCCTATCCCAACCAAAAATTTGTAAAG 59.394 37.037 5.27 0.00 36.45 1.85
461 672 7.606073 CCTATCCCAACCAAAAATTTGTAAAGG 59.394 37.037 5.27 1.74 36.45 3.11
462 673 6.561519 TCCCAACCAAAAATTTGTAAAGGA 57.438 33.333 5.27 3.77 36.45 3.36
463 674 6.958767 TCCCAACCAAAAATTTGTAAAGGAA 58.041 32.000 5.27 0.00 36.45 3.36
464 675 7.402862 TCCCAACCAAAAATTTGTAAAGGAAA 58.597 30.769 5.27 0.00 36.45 3.13
465 676 8.055790 TCCCAACCAAAAATTTGTAAAGGAAAT 58.944 29.630 5.27 0.00 36.45 2.17
466 677 8.134261 CCCAACCAAAAATTTGTAAAGGAAATG 58.866 33.333 5.27 0.00 36.45 2.32
475 686 9.435688 AAATTTGTAAAGGAAATGATTAGGTGC 57.564 29.630 0.00 0.00 0.00 5.01
476 687 5.811399 TGTAAAGGAAATGATTAGGTGCG 57.189 39.130 0.00 0.00 0.00 5.34
477 688 3.782889 AAAGGAAATGATTAGGTGCGC 57.217 42.857 0.00 0.00 0.00 6.09
478 689 1.680338 AGGAAATGATTAGGTGCGCC 58.320 50.000 8.71 8.71 0.00 6.53
479 690 1.064758 AGGAAATGATTAGGTGCGCCA 60.065 47.619 20.59 0.00 37.19 5.69
480 691 1.748493 GGAAATGATTAGGTGCGCCAA 59.252 47.619 20.59 11.20 37.19 4.52
481 692 2.223572 GGAAATGATTAGGTGCGCCAAG 60.224 50.000 20.59 0.00 37.19 3.61
482 693 2.418368 AATGATTAGGTGCGCCAAGA 57.582 45.000 20.59 3.70 37.19 3.02
483 694 2.418368 ATGATTAGGTGCGCCAAGAA 57.582 45.000 20.59 9.91 37.19 2.52
484 695 2.192664 TGATTAGGTGCGCCAAGAAA 57.807 45.000 20.59 7.45 37.19 2.52
485 696 2.509569 TGATTAGGTGCGCCAAGAAAA 58.490 42.857 20.59 4.84 37.19 2.29
486 697 2.887783 TGATTAGGTGCGCCAAGAAAAA 59.112 40.909 20.59 3.01 37.19 1.94
505 716 3.543680 AAAGATATGTGGGGAGACACG 57.456 47.619 0.00 0.00 44.21 4.49
506 717 2.160721 AGATATGTGGGGAGACACGT 57.839 50.000 0.00 0.00 44.21 4.49
507 718 2.467880 AGATATGTGGGGAGACACGTT 58.532 47.619 0.00 0.00 44.21 3.99
508 719 2.838202 AGATATGTGGGGAGACACGTTT 59.162 45.455 0.00 0.00 44.21 3.60
510 721 0.320421 ATGTGGGGAGACACGTTTCG 60.320 55.000 0.00 0.00 44.21 3.46
511 722 2.029964 TGGGGAGACACGTTTCGC 59.970 61.111 0.00 0.00 35.32 4.70
513 724 3.110178 GGGAGACACGTTTCGCCG 61.110 66.667 16.74 0.00 36.36 6.46
514 725 2.049802 GGAGACACGTTTCGCCGA 60.050 61.111 8.77 0.00 0.00 5.54
515 726 1.662446 GGAGACACGTTTCGCCGAA 60.662 57.895 8.77 0.00 0.00 4.30
516 727 1.216941 GGAGACACGTTTCGCCGAAA 61.217 55.000 8.43 8.43 0.00 3.46
518 729 0.529119 AGACACGTTTCGCCGAAACT 60.529 50.000 32.28 19.10 46.55 2.66
544 843 3.646715 CGTTCCCAAGAGCCCCCA 61.647 66.667 0.00 0.00 0.00 4.96
545 844 2.851045 GTTCCCAAGAGCCCCCAA 59.149 61.111 0.00 0.00 0.00 4.12
559 858 4.383602 CCAACGCGCTGGGTTTCG 62.384 66.667 20.85 0.00 36.59 3.46
565 864 4.697756 CGCTGGGTTTCGCCTGGA 62.698 66.667 0.00 0.00 37.43 3.86
566 865 2.044946 GCTGGGTTTCGCCTGGAT 60.045 61.111 0.00 0.00 37.43 3.41
567 866 1.678970 GCTGGGTTTCGCCTGGATT 60.679 57.895 0.00 0.00 37.43 3.01
568 867 1.250840 GCTGGGTTTCGCCTGGATTT 61.251 55.000 0.00 0.00 37.43 2.17
569 868 0.527565 CTGGGTTTCGCCTGGATTTG 59.472 55.000 0.00 0.00 37.43 2.32
570 869 1.215382 GGGTTTCGCCTGGATTTGC 59.785 57.895 0.00 0.00 37.43 3.68
571 870 1.215382 GGTTTCGCCTGGATTTGCC 59.785 57.895 0.00 0.00 37.10 4.52
572 871 1.154035 GTTTCGCCTGGATTTGCCG 60.154 57.895 0.00 0.00 40.66 5.69
573 872 2.339556 TTTCGCCTGGATTTGCCGG 61.340 57.895 0.00 0.00 43.18 6.13
577 876 3.619938 CCTGGATTTGCCGGCATT 58.380 55.556 33.25 21.61 42.12 3.56
578 877 2.805897 CCTGGATTTGCCGGCATTA 58.194 52.632 33.25 22.14 42.12 1.90
579 878 1.331214 CCTGGATTTGCCGGCATTAT 58.669 50.000 33.25 25.94 42.12 1.28
581 880 2.102925 CCTGGATTTGCCGGCATTATTT 59.897 45.455 33.25 13.46 42.12 1.40
582 881 3.432046 CCTGGATTTGCCGGCATTATTTT 60.432 43.478 33.25 11.50 42.12 1.82
583 882 3.529533 TGGATTTGCCGGCATTATTTTG 58.470 40.909 33.25 0.00 40.66 2.44
585 884 3.555547 GGATTTGCCGGCATTATTTTGAC 59.444 43.478 33.25 13.53 0.00 3.18
630 2781 2.935481 TGGCTTCTGTGGAGGGGG 60.935 66.667 0.00 0.00 0.00 5.40
677 2832 2.915659 AACCCCACGAGACGAGCA 60.916 61.111 0.00 0.00 0.00 4.26
680 2835 4.436998 CCCACGAGACGAGCACCC 62.437 72.222 0.00 0.00 0.00 4.61
685 2840 4.131088 GAGACGAGCACCCGGACC 62.131 72.222 0.73 0.00 0.00 4.46
724 2879 1.448985 GGAACCATAAAGCGTGCAGA 58.551 50.000 0.00 0.00 0.00 4.26
726 2881 2.076863 GAACCATAAAGCGTGCAGACT 58.923 47.619 0.00 0.00 0.00 3.24
728 2883 1.270839 ACCATAAAGCGTGCAGACTGT 60.271 47.619 3.99 0.00 0.00 3.55
746 2913 2.746362 CTGTGCACCAAATCCTCTTCTC 59.254 50.000 15.69 0.00 0.00 2.87
748 2915 1.704628 TGCACCAAATCCTCTTCTCCA 59.295 47.619 0.00 0.00 0.00 3.86
753 2920 2.158549 CCAAATCCTCTTCTCCATCCCC 60.159 54.545 0.00 0.00 0.00 4.81
761 2945 0.535335 TTCTCCATCCCCGTTCTTCG 59.465 55.000 0.00 0.00 39.52 3.79
762 2946 0.323999 TCTCCATCCCCGTTCTTCGA 60.324 55.000 0.00 0.00 42.86 3.71
771 2955 3.067742 TCCCCGTTCTTCGATAGCTTTAG 59.932 47.826 0.00 0.00 42.86 1.85
774 2958 3.444916 CGTTCTTCGATAGCTTTAGGCA 58.555 45.455 0.00 0.00 42.21 4.75
783 2967 4.516698 CGATAGCTTTAGGCATTTCATGGT 59.483 41.667 0.00 0.00 44.79 3.55
791 2975 1.818674 GGCATTTCATGGTCCGAAAGT 59.181 47.619 0.00 0.00 35.91 2.66
796 2980 4.829064 TTTCATGGTCCGAAAGTGAAAG 57.171 40.909 0.00 0.00 34.82 2.62
922 3106 1.588082 CGGCGCCCCTATTATACGT 59.412 57.895 23.46 0.00 0.00 3.57
970 3154 4.814294 ATTCCCCGACGCGCAGTC 62.814 66.667 18.30 18.30 46.16 3.51
982 3186 1.789506 GCGCAGTCTGTCTTCTTCTT 58.210 50.000 0.30 0.00 0.00 2.52
986 3190 2.333014 CAGTCTGTCTTCTTCTTCCGC 58.667 52.381 0.00 0.00 0.00 5.54
1254 3458 3.302347 GAGCTAGTGGCCGTGCACT 62.302 63.158 16.19 0.00 43.05 4.40
1255 3459 3.121030 GCTAGTGGCCGTGCACTG 61.121 66.667 16.19 9.93 33.26 3.66
1256 3460 3.121030 CTAGTGGCCGTGCACTGC 61.121 66.667 23.40 23.40 33.26 4.40
1429 3637 6.633683 CAGATAAATTTCATGTCGCAAATGC 58.366 36.000 0.00 0.00 37.78 3.56
1430 3638 6.474427 CAGATAAATTTCATGTCGCAAATGCT 59.526 34.615 3.63 0.00 39.32 3.79
1431 3639 7.644945 CAGATAAATTTCATGTCGCAAATGCTA 59.355 33.333 3.63 0.00 39.32 3.49
1446 3654 5.499652 GCAAATGCTATTTCTTCATGTTGCG 60.500 40.000 0.00 0.00 38.21 4.85
1447 3655 3.763097 TGCTATTTCTTCATGTTGCGG 57.237 42.857 0.00 0.00 0.00 5.69
1461 3669 2.289382 TGTTGCGGATGTTAAGCAGAGA 60.289 45.455 0.00 0.00 42.19 3.10
1476 3684 4.232221 AGCAGAGAAATTTCATTGTTGCG 58.768 39.130 19.99 1.42 34.45 4.85
1488 3696 1.649390 TTGTTGCGAGTGTTGCCGTT 61.649 50.000 0.00 0.00 0.00 4.44
1494 3702 1.918543 GCGAGTGTTGCCGTTGTTAAC 60.919 52.381 0.00 0.00 0.00 2.01
1499 3707 2.353579 GTGTTGCCGTTGTTAACAGTCT 59.646 45.455 8.56 0.00 35.24 3.24
1500 3708 2.610374 TGTTGCCGTTGTTAACAGTCTC 59.390 45.455 8.56 1.29 31.34 3.36
1503 3711 3.909430 TGCCGTTGTTAACAGTCTCTAG 58.091 45.455 8.56 0.00 0.00 2.43
1509 3717 7.201418 GCCGTTGTTAACAGTCTCTAGTTTATC 60.201 40.741 8.56 0.00 0.00 1.75
1518 3726 6.607600 ACAGTCTCTAGTTTATCATGGCTGTA 59.392 38.462 0.00 0.00 31.64 2.74
1521 3729 7.343316 AGTCTCTAGTTTATCATGGCTGTAGTT 59.657 37.037 0.00 0.00 0.00 2.24
1541 3751 4.745125 AGTTACTGTCACAACACGAAGATG 59.255 41.667 0.00 0.00 0.00 2.90
1545 3755 4.923871 ACTGTCACAACACGAAGATGATAC 59.076 41.667 0.00 0.00 0.00 2.24
1589 3799 5.975693 TCTAAAGTCGGATTTGGCAAATT 57.024 34.783 25.02 11.68 0.00 1.82
1591 3801 4.599047 AAAGTCGGATTTGGCAAATTCA 57.401 36.364 26.47 13.66 0.00 2.57
1613 3823 2.664851 CTCAAACGCCCGCAGACA 60.665 61.111 0.00 0.00 0.00 3.41
1642 3853 1.281960 CGTTCGTCGACAGTGACCT 59.718 57.895 17.16 0.00 42.86 3.85
1653 3864 2.057503 CAGTGACCTGTCAAGTCTCG 57.942 55.000 0.75 0.00 41.85 4.04
1809 4021 4.612412 GTGTTGGTCCGGTCGCCA 62.612 66.667 0.00 6.18 0.00 5.69
1827 4039 1.134037 CCAGCGAGGTAGAGTAGGACT 60.134 57.143 0.00 0.00 0.00 3.85
1836 4048 2.696526 AGAGTAGGACTTGGGACACA 57.303 50.000 0.00 0.00 39.29 3.72
1860 4072 3.062466 CTCACGGGACTCGAGGCA 61.062 66.667 22.31 0.00 42.43 4.75
1868 4080 3.575351 GACTCGAGGCACCGCTGTT 62.575 63.158 15.11 0.00 0.00 3.16
1875 4087 2.275380 GGCACCGCTGTTTCCCATT 61.275 57.895 0.00 0.00 0.00 3.16
1877 4090 1.501741 CACCGCTGTTTCCCATTCG 59.498 57.895 0.00 0.00 0.00 3.34
1885 4098 3.751698 GCTGTTTCCCATTCGTACTCTTT 59.248 43.478 0.00 0.00 0.00 2.52
1889 4102 5.221561 TGTTTCCCATTCGTACTCTTTCTCA 60.222 40.000 0.00 0.00 0.00 3.27
1893 4106 5.363868 TCCCATTCGTACTCTTTCTCATCAT 59.636 40.000 0.00 0.00 0.00 2.45
1895 4108 7.233553 TCCCATTCGTACTCTTTCTCATCATAT 59.766 37.037 0.00 0.00 0.00 1.78
1909 4122 4.876580 TCATCATATCTCGGATCCCTGAT 58.123 43.478 6.06 12.19 0.00 2.90
1919 4132 1.383943 ATCCCTGATGGTGCCGGTA 60.384 57.895 1.90 0.00 34.77 4.02
2034 4254 3.390521 TGACTCCGCCTCGCCAAT 61.391 61.111 0.00 0.00 0.00 3.16
2042 4262 2.350895 CCTCGCCAATGTCCACCA 59.649 61.111 0.00 0.00 0.00 4.17
2127 4347 3.449042 GTCGGACGACGCTGAAAG 58.551 61.111 9.23 0.00 43.86 2.62
2128 4348 1.371389 GTCGGACGACGCTGAAAGT 60.371 57.895 9.23 0.00 43.86 2.66
2141 4361 4.103697 GCTGAAAGTGCGTTATATCGAC 57.896 45.455 7.38 3.28 35.30 4.20
2142 4362 3.797256 GCTGAAAGTGCGTTATATCGACT 59.203 43.478 7.38 5.26 35.30 4.18
2143 4363 4.974275 GCTGAAAGTGCGTTATATCGACTA 59.026 41.667 7.38 0.00 35.30 2.59
2144 4364 5.115773 GCTGAAAGTGCGTTATATCGACTAG 59.884 44.000 7.38 0.00 35.30 2.57
2145 4365 6.367686 TGAAAGTGCGTTATATCGACTAGA 57.632 37.500 7.38 0.00 0.00 2.43
2146 4366 6.427974 TGAAAGTGCGTTATATCGACTAGAG 58.572 40.000 7.38 0.00 0.00 2.43
2147 4367 5.359716 AAGTGCGTTATATCGACTAGAGG 57.640 43.478 7.38 0.00 0.00 3.69
2148 4368 4.639334 AGTGCGTTATATCGACTAGAGGA 58.361 43.478 7.38 0.00 0.00 3.71
2149 4369 4.691685 AGTGCGTTATATCGACTAGAGGAG 59.308 45.833 7.38 0.00 0.00 3.69
2150 4370 4.001652 TGCGTTATATCGACTAGAGGAGG 58.998 47.826 7.38 0.00 0.00 4.30
2151 4371 3.374678 GCGTTATATCGACTAGAGGAGGG 59.625 52.174 7.38 0.00 0.00 4.30
2152 4372 3.940221 CGTTATATCGACTAGAGGAGGGG 59.060 52.174 0.00 0.00 0.00 4.79
2153 4373 4.565236 CGTTATATCGACTAGAGGAGGGGT 60.565 50.000 0.00 0.00 0.00 4.95
2154 4374 2.953284 TATCGACTAGAGGAGGGGTG 57.047 55.000 0.00 0.00 0.00 4.61
2155 4375 1.223501 ATCGACTAGAGGAGGGGTGA 58.776 55.000 0.00 0.00 0.00 4.02
2156 4376 0.997363 TCGACTAGAGGAGGGGTGAA 59.003 55.000 0.00 0.00 0.00 3.18
2157 4377 1.569548 TCGACTAGAGGAGGGGTGAAT 59.430 52.381 0.00 0.00 0.00 2.57
2158 4378 2.781757 TCGACTAGAGGAGGGGTGAATA 59.218 50.000 0.00 0.00 0.00 1.75
2159 4379 3.398292 TCGACTAGAGGAGGGGTGAATAT 59.602 47.826 0.00 0.00 0.00 1.28
2160 4380 3.508012 CGACTAGAGGAGGGGTGAATATG 59.492 52.174 0.00 0.00 0.00 1.78
2161 4381 3.243724 ACTAGAGGAGGGGTGAATATGC 58.756 50.000 0.00 0.00 0.00 3.14
2162 4382 2.196742 AGAGGAGGGGTGAATATGCA 57.803 50.000 0.00 0.00 0.00 3.96
2163 4383 2.492025 AGAGGAGGGGTGAATATGCAA 58.508 47.619 0.00 0.00 0.00 4.08
2164 4384 3.059097 AGAGGAGGGGTGAATATGCAAT 58.941 45.455 0.00 0.00 0.00 3.56
2165 4385 3.464833 AGAGGAGGGGTGAATATGCAATT 59.535 43.478 0.00 0.00 0.00 2.32
2166 4386 4.078980 AGAGGAGGGGTGAATATGCAATTT 60.079 41.667 0.00 0.00 0.00 1.82
2167 4387 4.623863 AGGAGGGGTGAATATGCAATTTT 58.376 39.130 0.00 0.00 0.00 1.82
2168 4388 5.032170 AGGAGGGGTGAATATGCAATTTTT 58.968 37.500 0.00 0.00 0.00 1.94
2169 4389 6.201591 AGGAGGGGTGAATATGCAATTTTTA 58.798 36.000 0.00 0.00 0.00 1.52
2170 4390 6.845975 AGGAGGGGTGAATATGCAATTTTTAT 59.154 34.615 0.00 0.00 0.00 1.40
2171 4391 6.930722 GGAGGGGTGAATATGCAATTTTTATG 59.069 38.462 0.00 0.00 0.00 1.90
2172 4392 7.201992 GGAGGGGTGAATATGCAATTTTTATGA 60.202 37.037 0.00 0.00 0.00 2.15
2173 4393 8.088463 AGGGGTGAATATGCAATTTTTATGAA 57.912 30.769 0.00 0.00 0.00 2.57
2174 4394 8.716779 AGGGGTGAATATGCAATTTTTATGAAT 58.283 29.630 0.00 0.00 0.00 2.57
2175 4395 9.341078 GGGGTGAATATGCAATTTTTATGAATT 57.659 29.630 0.00 0.00 0.00 2.17
2185 4405 9.340695 TGCAATTTTTATGAATTCTTCACTACG 57.659 29.630 7.05 0.00 43.48 3.51
2186 4406 9.554724 GCAATTTTTATGAATTCTTCACTACGA 57.445 29.630 7.05 0.00 43.48 3.43
2194 4414 7.364522 TGAATTCTTCACTACGAATTTCAGG 57.635 36.000 7.05 0.00 39.29 3.86
2195 4415 6.371548 TGAATTCTTCACTACGAATTTCAGGG 59.628 38.462 7.05 0.00 39.29 4.45
2196 4416 4.884668 TCTTCACTACGAATTTCAGGGT 57.115 40.909 0.00 0.00 31.69 4.34
2197 4417 4.566004 TCTTCACTACGAATTTCAGGGTG 58.434 43.478 0.00 2.52 31.69 4.61
2198 4418 4.282449 TCTTCACTACGAATTTCAGGGTGA 59.718 41.667 9.64 9.64 31.69 4.02
2199 4419 4.188247 TCACTACGAATTTCAGGGTGAG 57.812 45.455 9.64 0.00 0.00 3.51
2200 4420 3.056107 TCACTACGAATTTCAGGGTGAGG 60.056 47.826 9.64 0.00 0.00 3.86
2201 4421 3.056107 CACTACGAATTTCAGGGTGAGGA 60.056 47.826 0.00 0.00 0.00 3.71
2202 4422 3.581332 ACTACGAATTTCAGGGTGAGGAA 59.419 43.478 0.00 0.00 0.00 3.36
2203 4423 3.502123 ACGAATTTCAGGGTGAGGAAA 57.498 42.857 0.00 0.00 37.41 3.13
2204 4424 4.034285 ACGAATTTCAGGGTGAGGAAAT 57.966 40.909 0.00 0.00 43.54 2.17
2222 4442 6.729391 GGAAATTCCTGAGTGAAGAACTAC 57.271 41.667 4.46 0.00 34.35 2.73
2223 4443 6.468543 GGAAATTCCTGAGTGAAGAACTACT 58.531 40.000 4.46 0.00 34.35 2.57
2224 4444 6.937465 GGAAATTCCTGAGTGAAGAACTACTT 59.063 38.462 4.46 0.00 34.35 2.24
2225 4445 7.095017 GGAAATTCCTGAGTGAAGAACTACTTG 60.095 40.741 4.46 0.00 34.35 3.16
2226 4446 4.258702 TCCTGAGTGAAGAACTACTTGC 57.741 45.455 0.00 0.00 40.07 4.01
2227 4447 3.641436 TCCTGAGTGAAGAACTACTTGCA 59.359 43.478 0.00 0.00 40.07 4.08
2228 4448 3.993081 CCTGAGTGAAGAACTACTTGCAG 59.007 47.826 0.00 0.00 40.07 4.41
2229 4449 3.393800 TGAGTGAAGAACTACTTGCAGC 58.606 45.455 0.00 0.00 40.07 5.25
2230 4450 2.408050 AGTGAAGAACTACTTGCAGCG 58.592 47.619 0.00 0.00 37.36 5.18
2231 4451 1.461127 GTGAAGAACTACTTGCAGCGG 59.539 52.381 0.00 0.00 39.13 5.52
2232 4452 1.343142 TGAAGAACTACTTGCAGCGGA 59.657 47.619 0.00 0.00 39.13 5.54
2233 4453 2.224185 TGAAGAACTACTTGCAGCGGAA 60.224 45.455 0.00 0.00 39.13 4.30
2234 4454 2.770164 AGAACTACTTGCAGCGGAAT 57.230 45.000 0.00 0.00 0.00 3.01
2235 4455 3.887621 AGAACTACTTGCAGCGGAATA 57.112 42.857 0.00 0.00 0.00 1.75
2236 4456 4.202245 AGAACTACTTGCAGCGGAATAA 57.798 40.909 0.00 0.00 0.00 1.40
2237 4457 4.184629 AGAACTACTTGCAGCGGAATAAG 58.815 43.478 0.00 0.00 0.00 1.73
2238 4458 3.611766 ACTACTTGCAGCGGAATAAGT 57.388 42.857 1.12 1.12 37.21 2.24
2239 4459 4.730949 ACTACTTGCAGCGGAATAAGTA 57.269 40.909 3.08 3.08 35.26 2.24
2240 4460 4.430908 ACTACTTGCAGCGGAATAAGTAC 58.569 43.478 0.00 0.00 35.26 2.73
2241 4461 3.611766 ACTTGCAGCGGAATAAGTACT 57.388 42.857 0.00 0.00 32.05 2.73
2242 4462 3.522553 ACTTGCAGCGGAATAAGTACTC 58.477 45.455 0.00 0.00 32.05 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 5.993748 TTGAATTGAATCCCAACTAACCC 57.006 39.130 0.00 0.00 37.63 4.11
130 131 9.090692 CAACTAACCATTGATTGAATTGAATCC 57.909 33.333 14.05 0.00 32.20 3.01
170 180 4.274214 ACTTGTGTCATGGATTGATATGCG 59.726 41.667 0.00 0.00 36.54 4.73
173 183 7.707624 ACAAACTTGTGTCATGGATTGATAT 57.292 32.000 0.00 0.00 40.49 1.63
177 187 6.912082 TCATACAAACTTGTGTCATGGATTG 58.088 36.000 5.34 0.00 42.31 2.67
179 189 7.707624 AATCATACAAACTTGTGTCATGGAT 57.292 32.000 5.34 0.00 42.31 3.41
180 190 7.448161 AGAAATCATACAAACTTGTGTCATGGA 59.552 33.333 5.34 0.00 42.31 3.41
181 191 7.539710 CAGAAATCATACAAACTTGTGTCATGG 59.460 37.037 5.34 0.00 42.31 3.66
182 192 8.291740 TCAGAAATCATACAAACTTGTGTCATG 58.708 33.333 5.34 2.06 42.31 3.07
183 193 8.292448 GTCAGAAATCATACAAACTTGTGTCAT 58.708 33.333 5.34 0.00 42.31 3.06
186 196 7.566760 TGTCAGAAATCATACAAACTTGTGT 57.433 32.000 5.34 0.00 42.31 3.72
187 197 8.077991 ACATGTCAGAAATCATACAAACTTGTG 58.922 33.333 5.34 0.00 42.31 3.33
189 199 9.467258 AAACATGTCAGAAATCATACAAACTTG 57.533 29.630 0.00 0.00 0.00 3.16
192 202 9.121517 CAGAAACATGTCAGAAATCATACAAAC 57.878 33.333 0.00 0.00 0.00 2.93
196 206 6.127925 TGGCAGAAACATGTCAGAAATCATAC 60.128 38.462 0.00 0.00 29.73 2.39
198 208 4.768448 TGGCAGAAACATGTCAGAAATCAT 59.232 37.500 0.00 0.00 29.73 2.45
199 209 4.143543 TGGCAGAAACATGTCAGAAATCA 58.856 39.130 0.00 0.00 29.73 2.57
200 210 4.771590 TGGCAGAAACATGTCAGAAATC 57.228 40.909 0.00 0.00 29.73 2.17
201 211 5.011329 ACATTGGCAGAAACATGTCAGAAAT 59.989 36.000 0.00 0.00 35.92 2.17
203 213 3.890756 ACATTGGCAGAAACATGTCAGAA 59.109 39.130 0.00 0.00 35.92 3.02
204 214 3.489355 ACATTGGCAGAAACATGTCAGA 58.511 40.909 0.00 0.00 35.92 3.27
205 215 3.928727 ACATTGGCAGAAACATGTCAG 57.071 42.857 0.00 0.00 35.92 3.51
206 216 3.191162 GCTACATTGGCAGAAACATGTCA 59.809 43.478 0.00 0.00 31.66 3.58
207 217 3.191162 TGCTACATTGGCAGAAACATGTC 59.809 43.478 0.00 0.00 34.56 3.06
208 218 3.156293 TGCTACATTGGCAGAAACATGT 58.844 40.909 6.93 6.93 34.56 3.21
209 219 3.853831 TGCTACATTGGCAGAAACATG 57.146 42.857 0.00 0.00 34.56 3.21
212 222 3.191162 TGACATGCTACATTGGCAGAAAC 59.809 43.478 0.00 0.00 43.15 2.78
213 223 3.419943 TGACATGCTACATTGGCAGAAA 58.580 40.909 0.00 0.00 43.15 2.52
214 224 3.070476 TGACATGCTACATTGGCAGAA 57.930 42.857 0.00 0.00 43.15 3.02
215 225 2.785540 TGACATGCTACATTGGCAGA 57.214 45.000 0.00 0.00 43.15 4.26
216 226 4.380841 AAATGACATGCTACATTGGCAG 57.619 40.909 12.00 0.00 43.15 4.85
218 228 4.327898 CACAAAATGACATGCTACATTGGC 59.672 41.667 12.00 0.00 36.92 4.52
219 229 5.712004 TCACAAAATGACATGCTACATTGG 58.288 37.500 12.00 10.43 36.92 3.16
220 230 7.640616 TTTCACAAAATGACATGCTACATTG 57.359 32.000 12.00 6.80 36.92 2.82
221 231 8.659925 TTTTTCACAAAATGACATGCTACATT 57.340 26.923 0.00 0.00 36.92 2.71
222 232 7.927629 ACTTTTTCACAAAATGACATGCTACAT 59.072 29.630 0.00 0.00 36.92 2.29
223 233 7.264221 ACTTTTTCACAAAATGACATGCTACA 58.736 30.769 0.00 0.00 36.92 2.74
255 265 1.697982 GGGGGTGACTGTAGAAACTGT 59.302 52.381 0.00 0.00 40.14 3.55
256 266 1.697432 TGGGGGTGACTGTAGAAACTG 59.303 52.381 0.00 0.00 0.00 3.16
258 268 1.975680 TCTGGGGGTGACTGTAGAAAC 59.024 52.381 0.00 0.00 0.00 2.78
259 269 2.409064 TCTGGGGGTGACTGTAGAAA 57.591 50.000 0.00 0.00 0.00 2.52
261 271 2.642171 AATCTGGGGGTGACTGTAGA 57.358 50.000 0.00 0.00 0.00 2.59
262 272 5.373812 AATTAATCTGGGGGTGACTGTAG 57.626 43.478 0.00 0.00 0.00 2.74
264 274 5.789574 TTAATTAATCTGGGGGTGACTGT 57.210 39.130 0.00 0.00 0.00 3.55
265 275 6.095440 CAGTTTAATTAATCTGGGGGTGACTG 59.905 42.308 21.27 13.53 32.21 3.51
266 276 6.187682 CAGTTTAATTAATCTGGGGGTGACT 58.812 40.000 21.27 7.06 32.21 3.41
267 277 5.163550 GCAGTTTAATTAATCTGGGGGTGAC 60.164 44.000 26.44 12.17 34.92 3.67
268 278 4.953579 GCAGTTTAATTAATCTGGGGGTGA 59.046 41.667 26.44 0.00 34.92 4.02
269 279 4.709397 TGCAGTTTAATTAATCTGGGGGTG 59.291 41.667 26.44 10.57 34.92 4.61
271 281 5.656416 TCTTGCAGTTTAATTAATCTGGGGG 59.344 40.000 26.44 10.74 34.92 5.40
272 282 6.773976 TCTTGCAGTTTAATTAATCTGGGG 57.226 37.500 26.44 11.00 34.92 4.96
273 283 9.090692 CAAATCTTGCAGTTTAATTAATCTGGG 57.909 33.333 26.44 11.52 34.92 4.45
274 284 9.859427 TCAAATCTTGCAGTTTAATTAATCTGG 57.141 29.630 26.44 16.02 34.92 3.86
282 292 9.143631 GCTTGTTATCAAATCTTGCAGTTTAAT 57.856 29.630 0.00 0.00 32.87 1.40
319 329 5.468409 GGAATAGGAGCAAGCTGAATCTAAC 59.532 44.000 0.00 0.00 0.00 2.34
343 554 0.749649 ACGGCTGGAGATGCTCTTAG 59.250 55.000 0.00 0.00 0.00 2.18
344 555 1.134699 CAACGGCTGGAGATGCTCTTA 60.135 52.381 0.00 0.00 0.00 2.10
345 556 0.392193 CAACGGCTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
346 557 1.220206 CAACGGCTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
347 558 2.467826 GCAACGGCTGGAGATGCTC 61.468 63.158 0.00 0.00 36.96 4.26
349 560 2.747460 TGCAACGGCTGGAGATGC 60.747 61.111 0.00 2.67 41.91 3.91
350 561 2.758089 GCTGCAACGGCTGGAGATG 61.758 63.158 11.62 0.00 46.07 2.90
352 563 4.704833 GGCTGCAACGGCTGGAGA 62.705 66.667 11.62 0.00 46.07 3.71
359 570 4.659172 TCTTGGGGGCTGCAACGG 62.659 66.667 0.50 0.00 0.00 4.44
361 572 0.960861 GTACTCTTGGGGGCTGCAAC 60.961 60.000 0.50 0.00 0.00 4.17
362 573 1.133809 AGTACTCTTGGGGGCTGCAA 61.134 55.000 0.50 0.00 0.00 4.08
363 574 0.252513 TAGTACTCTTGGGGGCTGCA 60.253 55.000 0.00 0.00 0.00 4.41
364 575 0.178301 GTAGTACTCTTGGGGGCTGC 59.822 60.000 0.00 0.00 0.00 5.25
365 576 0.831307 GGTAGTACTCTTGGGGGCTG 59.169 60.000 0.00 0.00 0.00 4.85
366 577 0.416231 TGGTAGTACTCTTGGGGGCT 59.584 55.000 0.00 0.00 0.00 5.19
367 578 1.209747 CTTGGTAGTACTCTTGGGGGC 59.790 57.143 0.00 0.00 0.00 5.80
368 579 1.209747 GCTTGGTAGTACTCTTGGGGG 59.790 57.143 0.00 0.00 0.00 5.40
369 580 1.209747 GGCTTGGTAGTACTCTTGGGG 59.790 57.143 0.00 0.00 0.00 4.96
370 581 1.906574 TGGCTTGGTAGTACTCTTGGG 59.093 52.381 0.00 0.00 0.00 4.12
371 582 3.695830 TTGGCTTGGTAGTACTCTTGG 57.304 47.619 0.00 0.00 0.00 3.61
372 583 3.437049 GCTTTGGCTTGGTAGTACTCTTG 59.563 47.826 0.00 0.00 35.22 3.02
373 584 3.676093 GCTTTGGCTTGGTAGTACTCTT 58.324 45.455 0.00 0.00 35.22 2.85
374 585 2.353803 CGCTTTGGCTTGGTAGTACTCT 60.354 50.000 0.00 0.00 36.09 3.24
375 586 2.000447 CGCTTTGGCTTGGTAGTACTC 59.000 52.381 0.00 0.00 36.09 2.59
376 587 1.621814 TCGCTTTGGCTTGGTAGTACT 59.378 47.619 0.00 0.00 36.09 2.73
380 591 3.938963 TCTATTTCGCTTTGGCTTGGTAG 59.061 43.478 0.00 0.00 36.09 3.18
381 592 3.945346 TCTATTTCGCTTTGGCTTGGTA 58.055 40.909 0.00 0.00 36.09 3.25
382 593 2.790433 TCTATTTCGCTTTGGCTTGGT 58.210 42.857 0.00 0.00 36.09 3.67
383 594 3.191371 ACTTCTATTTCGCTTTGGCTTGG 59.809 43.478 0.00 0.00 36.09 3.61
384 595 4.161333 CACTTCTATTTCGCTTTGGCTTG 58.839 43.478 0.00 0.00 36.09 4.01
385 596 3.366374 GCACTTCTATTTCGCTTTGGCTT 60.366 43.478 0.00 0.00 36.09 4.35
388 599 3.829886 TGCACTTCTATTTCGCTTTGG 57.170 42.857 0.00 0.00 0.00 3.28
389 600 4.973396 TCATGCACTTCTATTTCGCTTTG 58.027 39.130 0.00 0.00 0.00 2.77
390 601 4.095483 CCTCATGCACTTCTATTTCGCTTT 59.905 41.667 0.00 0.00 0.00 3.51
391 602 3.624861 CCTCATGCACTTCTATTTCGCTT 59.375 43.478 0.00 0.00 0.00 4.68
392 603 3.118629 TCCTCATGCACTTCTATTTCGCT 60.119 43.478 0.00 0.00 0.00 4.93
393 604 3.198068 TCCTCATGCACTTCTATTTCGC 58.802 45.455 0.00 0.00 0.00 4.70
394 605 3.806521 CCTCCTCATGCACTTCTATTTCG 59.193 47.826 0.00 0.00 0.00 3.46
395 606 4.133078 CCCTCCTCATGCACTTCTATTTC 58.867 47.826 0.00 0.00 0.00 2.17
396 607 3.686691 GCCCTCCTCATGCACTTCTATTT 60.687 47.826 0.00 0.00 0.00 1.40
397 608 2.158696 GCCCTCCTCATGCACTTCTATT 60.159 50.000 0.00 0.00 0.00 1.73
398 609 1.419387 GCCCTCCTCATGCACTTCTAT 59.581 52.381 0.00 0.00 0.00 1.98
399 610 0.833287 GCCCTCCTCATGCACTTCTA 59.167 55.000 0.00 0.00 0.00 2.10
401 612 0.106819 ATGCCCTCCTCATGCACTTC 60.107 55.000 0.00 0.00 37.92 3.01
402 613 0.106819 GATGCCCTCCTCATGCACTT 60.107 55.000 0.00 0.00 37.92 3.16
403 614 0.987081 AGATGCCCTCCTCATGCACT 60.987 55.000 0.00 0.00 37.92 4.40
404 615 0.106819 AAGATGCCCTCCTCATGCAC 60.107 55.000 0.00 0.00 37.92 4.57
405 616 0.627451 AAAGATGCCCTCCTCATGCA 59.373 50.000 0.00 0.00 39.68 3.96
406 617 1.316651 GAAAGATGCCCTCCTCATGC 58.683 55.000 0.00 0.00 0.00 4.06
407 618 1.213678 TGGAAAGATGCCCTCCTCATG 59.786 52.381 0.00 0.00 0.00 3.07
408 619 1.493871 CTGGAAAGATGCCCTCCTCAT 59.506 52.381 0.00 0.00 0.00 2.90
410 621 0.465278 GCTGGAAAGATGCCCTCCTC 60.465 60.000 0.00 0.00 0.00 3.71
411 622 1.611965 GCTGGAAAGATGCCCTCCT 59.388 57.895 0.00 0.00 0.00 3.69
412 623 1.454663 GGCTGGAAAGATGCCCTCC 60.455 63.158 0.00 0.00 40.71 4.30
413 624 1.034292 GTGGCTGGAAAGATGCCCTC 61.034 60.000 0.00 0.00 45.56 4.30
416 627 1.598701 GGTGTGGCTGGAAAGATGCC 61.599 60.000 0.00 0.00 46.26 4.40
417 628 1.598701 GGGTGTGGCTGGAAAGATGC 61.599 60.000 0.00 0.00 0.00 3.91
418 629 0.038744 AGGGTGTGGCTGGAAAGATG 59.961 55.000 0.00 0.00 0.00 2.90
419 630 1.668826 TAGGGTGTGGCTGGAAAGAT 58.331 50.000 0.00 0.00 0.00 2.40
421 632 1.408822 GGATAGGGTGTGGCTGGAAAG 60.409 57.143 0.00 0.00 0.00 2.62
423 634 1.279025 GGGATAGGGTGTGGCTGGAA 61.279 60.000 0.00 0.00 0.00 3.53
424 635 1.692749 GGGATAGGGTGTGGCTGGA 60.693 63.158 0.00 0.00 0.00 3.86
425 636 1.570857 TTGGGATAGGGTGTGGCTGG 61.571 60.000 0.00 0.00 0.00 4.85
426 637 0.394352 GTTGGGATAGGGTGTGGCTG 60.394 60.000 0.00 0.00 0.00 4.85
427 638 1.571773 GGTTGGGATAGGGTGTGGCT 61.572 60.000 0.00 0.00 0.00 4.75
428 639 1.076995 GGTTGGGATAGGGTGTGGC 60.077 63.158 0.00 0.00 0.00 5.01
429 640 0.701731 TTGGTTGGGATAGGGTGTGG 59.298 55.000 0.00 0.00 0.00 4.17
430 641 2.595750 TTTGGTTGGGATAGGGTGTG 57.404 50.000 0.00 0.00 0.00 3.82
431 642 3.621682 TTTTTGGTTGGGATAGGGTGT 57.378 42.857 0.00 0.00 0.00 4.16
432 643 5.221823 ACAAATTTTTGGTTGGGATAGGGTG 60.222 40.000 7.85 0.00 42.34 4.61
433 644 4.910913 ACAAATTTTTGGTTGGGATAGGGT 59.089 37.500 7.85 0.00 42.34 4.34
434 645 5.497464 ACAAATTTTTGGTTGGGATAGGG 57.503 39.130 7.85 0.00 42.34 3.53
435 646 7.606073 CCTTTACAAATTTTTGGTTGGGATAGG 59.394 37.037 7.85 0.00 42.34 2.57
436 647 8.371699 TCCTTTACAAATTTTTGGTTGGGATAG 58.628 33.333 7.85 0.00 42.34 2.08
438 649 7.142995 TCCTTTACAAATTTTTGGTTGGGAT 57.857 32.000 7.85 0.00 42.34 3.85
439 650 6.561519 TCCTTTACAAATTTTTGGTTGGGA 57.438 33.333 7.85 6.89 42.34 4.37
440 651 7.631717 TTTCCTTTACAAATTTTTGGTTGGG 57.368 32.000 7.85 5.02 42.34 4.12
441 652 8.897752 TCATTTCCTTTACAAATTTTTGGTTGG 58.102 29.630 7.85 4.73 42.34 3.77
449 660 9.435688 GCACCTAATCATTTCCTTTACAAATTT 57.564 29.630 0.00 0.00 0.00 1.82
451 662 7.257722 CGCACCTAATCATTTCCTTTACAAAT 58.742 34.615 0.00 0.00 0.00 2.32
452 663 6.616947 CGCACCTAATCATTTCCTTTACAAA 58.383 36.000 0.00 0.00 0.00 2.83
453 664 5.392595 GCGCACCTAATCATTTCCTTTACAA 60.393 40.000 0.30 0.00 0.00 2.41
454 665 4.095782 GCGCACCTAATCATTTCCTTTACA 59.904 41.667 0.30 0.00 0.00 2.41
455 666 4.497507 GGCGCACCTAATCATTTCCTTTAC 60.498 45.833 10.83 0.00 0.00 2.01
457 668 2.427095 GGCGCACCTAATCATTTCCTTT 59.573 45.455 10.83 0.00 0.00 3.11
458 669 2.024414 GGCGCACCTAATCATTTCCTT 58.976 47.619 10.83 0.00 0.00 3.36
459 670 1.064758 TGGCGCACCTAATCATTTCCT 60.065 47.619 10.83 0.00 36.63 3.36
460 671 1.388547 TGGCGCACCTAATCATTTCC 58.611 50.000 10.83 0.00 36.63 3.13
461 672 2.682856 TCTTGGCGCACCTAATCATTTC 59.317 45.455 10.83 0.00 36.63 2.17
462 673 2.722094 TCTTGGCGCACCTAATCATTT 58.278 42.857 10.83 0.00 36.63 2.32
463 674 2.418368 TCTTGGCGCACCTAATCATT 57.582 45.000 10.83 0.00 36.63 2.57
464 675 2.418368 TTCTTGGCGCACCTAATCAT 57.582 45.000 10.83 0.00 36.63 2.45
465 676 2.192664 TTTCTTGGCGCACCTAATCA 57.807 45.000 10.83 0.00 36.63 2.57
466 677 3.569250 TTTTTCTTGGCGCACCTAATC 57.431 42.857 10.83 0.00 36.63 1.75
483 694 4.261801 CGTGTCTCCCCACATATCTTTTT 58.738 43.478 0.00 0.00 34.98 1.94
484 695 3.263425 ACGTGTCTCCCCACATATCTTTT 59.737 43.478 0.00 0.00 34.98 2.27
485 696 2.838202 ACGTGTCTCCCCACATATCTTT 59.162 45.455 0.00 0.00 34.98 2.52
486 697 2.467880 ACGTGTCTCCCCACATATCTT 58.532 47.619 0.00 0.00 34.98 2.40
487 698 2.160721 ACGTGTCTCCCCACATATCT 57.839 50.000 0.00 0.00 34.98 1.98
489 700 2.418197 CGAAACGTGTCTCCCCACATAT 60.418 50.000 3.82 0.00 34.98 1.78
491 702 0.320421 CGAAACGTGTCTCCCCACAT 60.320 55.000 3.82 0.00 34.98 3.21
493 704 2.315386 GCGAAACGTGTCTCCCCAC 61.315 63.158 3.82 0.00 0.00 4.61
494 705 2.029964 GCGAAACGTGTCTCCCCA 59.970 61.111 3.82 0.00 0.00 4.96
495 706 2.741211 GGCGAAACGTGTCTCCCC 60.741 66.667 3.12 0.00 0.00 4.81
496 707 3.110178 CGGCGAAACGTGTCTCCC 61.110 66.667 9.18 5.78 0.00 4.30
498 709 0.111398 GTTTCGGCGAAACGTGTCTC 60.111 55.000 39.13 21.64 41.59 3.36
500 711 4.484297 GTTTCGGCGAAACGTGTC 57.516 55.556 39.13 22.92 41.59 3.67
506 717 2.940561 GCGGAAGTTTCGGCGAAA 59.059 55.556 29.31 29.31 42.30 3.46
561 860 3.457610 AAATAATGCCGGCAAATCCAG 57.542 42.857 36.33 0.00 34.01 3.86
562 861 3.196469 TCAAAATAATGCCGGCAAATCCA 59.804 39.130 36.33 16.96 34.01 3.41
565 864 3.119316 TCGTCAAAATAATGCCGGCAAAT 60.119 39.130 36.33 26.37 0.00 2.32
566 865 2.229062 TCGTCAAAATAATGCCGGCAAA 59.771 40.909 36.33 25.24 0.00 3.68
567 866 1.813178 TCGTCAAAATAATGCCGGCAA 59.187 42.857 36.33 19.92 0.00 4.52
568 867 1.454201 TCGTCAAAATAATGCCGGCA 58.546 45.000 34.80 34.80 0.00 5.69
569 868 2.384382 CATCGTCAAAATAATGCCGGC 58.616 47.619 22.73 22.73 0.00 6.13
570 869 2.033299 AGCATCGTCAAAATAATGCCGG 59.967 45.455 0.00 0.00 44.34 6.13
571 870 3.002656 AGAGCATCGTCAAAATAATGCCG 59.997 43.478 2.78 0.00 44.34 5.69
572 871 4.558538 AGAGCATCGTCAAAATAATGCC 57.441 40.909 2.78 0.00 44.34 4.40
573 872 5.622856 GCTTAGAGCATCGTCAAAATAATGC 59.377 40.000 0.00 0.00 41.89 3.56
574 873 6.138761 GGCTTAGAGCATCGTCAAAATAATG 58.861 40.000 2.04 0.00 44.75 1.90
575 874 5.239525 GGGCTTAGAGCATCGTCAAAATAAT 59.760 40.000 2.04 0.00 44.75 1.28
576 875 4.574828 GGGCTTAGAGCATCGTCAAAATAA 59.425 41.667 2.04 0.00 44.75 1.40
577 876 4.127171 GGGCTTAGAGCATCGTCAAAATA 58.873 43.478 2.04 0.00 44.75 1.40
578 877 2.945668 GGGCTTAGAGCATCGTCAAAAT 59.054 45.455 2.04 0.00 44.75 1.82
579 878 2.290008 TGGGCTTAGAGCATCGTCAAAA 60.290 45.455 2.04 0.00 44.75 2.44
581 880 0.901827 TGGGCTTAGAGCATCGTCAA 59.098 50.000 2.04 0.00 44.75 3.18
582 881 0.901827 TTGGGCTTAGAGCATCGTCA 59.098 50.000 2.04 0.00 44.75 4.35
583 882 1.936547 CTTTGGGCTTAGAGCATCGTC 59.063 52.381 2.04 0.00 44.75 4.20
585 884 1.303309 CCTTTGGGCTTAGAGCATCG 58.697 55.000 2.04 0.00 44.75 3.84
645 2800 2.802724 GGTTGTGGTTGGTTGGGGC 61.803 63.158 0.00 0.00 0.00 5.80
680 2835 2.510691 CGTGGGAATTCCGGTCCG 60.511 66.667 18.30 12.75 38.76 4.79
685 2840 0.460284 CTGTCTCCGTGGGAATTCCG 60.460 60.000 18.30 6.99 38.76 4.30
724 2879 2.107204 AGAAGAGGATTTGGTGCACAGT 59.893 45.455 20.43 0.20 0.00 3.55
726 2881 2.553028 GGAGAAGAGGATTTGGTGCACA 60.553 50.000 20.43 1.62 0.00 4.57
728 2883 1.704628 TGGAGAAGAGGATTTGGTGCA 59.295 47.619 0.00 0.00 0.00 4.57
732 2887 2.158549 GGGGATGGAGAAGAGGATTTGG 60.159 54.545 0.00 0.00 0.00 3.28
746 2913 1.605712 GCTATCGAAGAACGGGGATGG 60.606 57.143 0.00 0.00 43.58 3.51
748 2915 1.705873 AGCTATCGAAGAACGGGGAT 58.294 50.000 0.00 0.00 43.58 3.85
753 2920 3.444916 TGCCTAAAGCTATCGAAGAACG 58.555 45.455 0.00 0.00 41.75 3.95
761 2945 5.048434 GGACCATGAAATGCCTAAAGCTATC 60.048 44.000 0.00 0.00 44.97 2.08
762 2946 4.829492 GGACCATGAAATGCCTAAAGCTAT 59.171 41.667 0.00 0.00 44.97 2.97
771 2955 1.818674 ACTTTCGGACCATGAAATGCC 59.181 47.619 0.00 0.00 44.97 4.40
774 2958 4.218417 CCTTTCACTTTCGGACCATGAAAT 59.782 41.667 0.00 0.00 38.30 2.17
783 2967 2.094182 CGGAGATCCTTTCACTTTCGGA 60.094 50.000 0.00 0.00 0.00 4.55
791 2975 0.325671 AGGCCTCGGAGATCCTTTCA 60.326 55.000 0.00 0.00 36.25 2.69
796 2980 1.524849 GCAAAGGCCTCGGAGATCC 60.525 63.158 5.23 7.33 33.89 3.36
877 3061 4.227134 GCGCTAGCTGGCTGGCTA 62.227 66.667 23.96 11.03 46.36 3.93
916 3100 1.598601 TCATGCAGCGTCGTACGTATA 59.401 47.619 16.05 0.00 44.73 1.47
922 3106 3.704843 GCATCATGCAGCGTCGTA 58.295 55.556 4.20 0.00 44.26 3.43
968 3152 1.715993 GGCGGAAGAAGAAGACAGAC 58.284 55.000 0.00 0.00 0.00 3.51
969 3153 0.243907 CGGCGGAAGAAGAAGACAGA 59.756 55.000 0.00 0.00 0.00 3.41
970 3154 0.737715 CCGGCGGAAGAAGAAGACAG 60.738 60.000 24.41 0.00 0.00 3.51
971 3155 1.292223 CCGGCGGAAGAAGAAGACA 59.708 57.895 24.41 0.00 0.00 3.41
972 3156 2.101233 GCCGGCGGAAGAAGAAGAC 61.101 63.158 33.44 3.13 0.00 3.01
993 3197 3.138930 CTCCGGGATCATCGTGCGT 62.139 63.158 0.00 0.00 0.00 5.24
1288 3492 2.010582 GAGCCGACGAGAATGGAGCT 62.011 60.000 0.00 0.00 0.00 4.09
1400 3608 7.263100 TGCGACATGAAATTTATCTGCTATT 57.737 32.000 0.00 0.00 0.00 1.73
1429 3637 5.490139 ACATCCGCAACATGAAGAAATAG 57.510 39.130 0.00 0.00 0.00 1.73
1430 3638 5.895636 AACATCCGCAACATGAAGAAATA 57.104 34.783 0.00 0.00 0.00 1.40
1431 3639 4.789012 AACATCCGCAACATGAAGAAAT 57.211 36.364 0.00 0.00 0.00 2.17
1446 3654 8.031277 ACAATGAAATTTCTCTGCTTAACATCC 58.969 33.333 18.64 0.00 31.22 3.51
1447 3655 8.976986 ACAATGAAATTTCTCTGCTTAACATC 57.023 30.769 18.64 0.00 31.22 3.06
1461 3669 4.025813 GCAACACTCGCAACAATGAAATTT 60.026 37.500 0.00 0.00 31.22 1.82
1476 3684 2.353579 ACTGTTAACAACGGCAACACTC 59.646 45.455 10.03 0.00 41.56 3.51
1488 3696 7.764443 GCCATGATAAACTAGAGACTGTTAACA 59.236 37.037 8.28 8.28 0.00 2.41
1494 3702 5.911752 ACAGCCATGATAAACTAGAGACTG 58.088 41.667 0.00 0.00 0.00 3.51
1499 3707 8.414003 CAGTAACTACAGCCATGATAAACTAGA 58.586 37.037 0.00 0.00 0.00 2.43
1500 3708 8.198109 ACAGTAACTACAGCCATGATAAACTAG 58.802 37.037 0.00 0.00 0.00 2.57
1503 3711 6.816640 TGACAGTAACTACAGCCATGATAAAC 59.183 38.462 0.00 0.00 0.00 2.01
1509 3717 3.925379 TGTGACAGTAACTACAGCCATG 58.075 45.455 0.00 0.00 0.00 3.66
1518 3726 4.380841 TCTTCGTGTTGTGACAGTAACT 57.619 40.909 4.66 0.00 36.20 2.24
1521 3729 4.577834 TCATCTTCGTGTTGTGACAGTA 57.422 40.909 0.00 0.00 36.20 2.74
1541 3751 4.491676 TCTAAGACCGCACACAAAGTATC 58.508 43.478 0.00 0.00 0.00 2.24
1545 3755 1.461127 GCTCTAAGACCGCACACAAAG 59.539 52.381 0.00 0.00 0.00 2.77
1571 3781 4.306600 GTTGAATTTGCCAAATCCGACTT 58.693 39.130 2.61 0.00 0.00 3.01
1574 3784 2.028567 GGGTTGAATTTGCCAAATCCGA 60.029 45.455 2.61 0.00 0.00 4.55
1579 3789 2.402564 TGAGGGGTTGAATTTGCCAAA 58.597 42.857 0.00 0.00 0.00 3.28
1589 3799 2.114411 GGGCGTTTGAGGGGTTGA 59.886 61.111 0.00 0.00 0.00 3.18
1653 3864 9.099454 GATATCCGGTTGTAGAATGGATTATTC 57.901 37.037 12.59 6.55 44.52 1.75
1744 3955 0.979709 TGGGCACAGCAGAGCTAGAT 60.980 55.000 0.00 0.00 36.40 1.98
1748 3959 2.045242 CATGGGCACAGCAGAGCT 60.045 61.111 0.00 0.00 40.77 4.09
1754 3965 3.503363 GTCGAGCATGGGCACAGC 61.503 66.667 0.00 0.00 44.61 4.40
1756 3967 4.758251 CCGTCGAGCATGGGCACA 62.758 66.667 0.00 0.00 44.61 4.57
1809 4021 2.645802 CAAGTCCTACTCTACCTCGCT 58.354 52.381 0.00 0.00 0.00 4.93
1827 4039 1.228245 GAGCTGGCTTGTGTCCCAA 60.228 57.895 0.00 0.00 0.00 4.12
1836 4048 2.925170 AGTCCCGTGAGCTGGCTT 60.925 61.111 0.00 0.00 0.00 4.35
1860 4072 0.322322 TACGAATGGGAAACAGCGGT 59.678 50.000 0.00 0.00 35.79 5.68
1865 4077 5.221561 TGAGAAAGAGTACGAATGGGAAACA 60.222 40.000 0.00 0.00 0.00 2.83
1868 4080 5.186992 TGATGAGAAAGAGTACGAATGGGAA 59.813 40.000 0.00 0.00 0.00 3.97
1875 4087 6.147985 CCGAGATATGATGAGAAAGAGTACGA 59.852 42.308 0.00 0.00 0.00 3.43
1877 4090 7.441890 TCCGAGATATGATGAGAAAGAGTAC 57.558 40.000 0.00 0.00 0.00 2.73
1885 4098 4.018050 TCAGGGATCCGAGATATGATGAGA 60.018 45.833 5.45 0.00 0.00 3.27
1889 4102 3.966006 CCATCAGGGATCCGAGATATGAT 59.034 47.826 14.96 10.06 40.01 2.45
1893 4106 2.529632 CACCATCAGGGATCCGAGATA 58.470 52.381 14.96 0.00 41.15 1.98
1895 4108 1.402896 GCACCATCAGGGATCCGAGA 61.403 60.000 5.45 6.44 41.15 4.04
1919 4132 2.576615 TCCATCATCGATCTGACGTCT 58.423 47.619 17.92 0.00 34.70 4.18
2034 4254 4.263572 CCCTTGCGGTGGTGGACA 62.264 66.667 0.00 0.00 0.00 4.02
2122 4342 6.367686 TCTAGTCGATATAACGCACTTTCA 57.632 37.500 10.84 0.00 0.00 2.69
2123 4343 5.852229 CCTCTAGTCGATATAACGCACTTTC 59.148 44.000 10.84 0.00 0.00 2.62
2124 4344 5.530171 TCCTCTAGTCGATATAACGCACTTT 59.470 40.000 10.84 0.00 0.00 2.66
2125 4345 5.061853 TCCTCTAGTCGATATAACGCACTT 58.938 41.667 10.84 0.00 0.00 3.16
2126 4346 4.639334 TCCTCTAGTCGATATAACGCACT 58.361 43.478 0.00 5.39 0.00 4.40
2127 4347 4.142859 CCTCCTCTAGTCGATATAACGCAC 60.143 50.000 0.00 0.00 0.00 5.34
2128 4348 4.001652 CCTCCTCTAGTCGATATAACGCA 58.998 47.826 0.00 0.00 0.00 5.24
2129 4349 3.374678 CCCTCCTCTAGTCGATATAACGC 59.625 52.174 0.00 0.00 0.00 4.84
2130 4350 3.940221 CCCCTCCTCTAGTCGATATAACG 59.060 52.174 0.00 0.00 0.00 3.18
2131 4351 4.701171 CACCCCTCCTCTAGTCGATATAAC 59.299 50.000 0.00 0.00 0.00 1.89
2132 4352 4.600547 TCACCCCTCCTCTAGTCGATATAA 59.399 45.833 0.00 0.00 0.00 0.98
2133 4353 4.173594 TCACCCCTCCTCTAGTCGATATA 58.826 47.826 0.00 0.00 0.00 0.86
2134 4354 2.987437 TCACCCCTCCTCTAGTCGATAT 59.013 50.000 0.00 0.00 0.00 1.63
2135 4355 2.415624 TCACCCCTCCTCTAGTCGATA 58.584 52.381 0.00 0.00 0.00 2.92
2136 4356 1.223501 TCACCCCTCCTCTAGTCGAT 58.776 55.000 0.00 0.00 0.00 3.59
2137 4357 0.997363 TTCACCCCTCCTCTAGTCGA 59.003 55.000 0.00 0.00 0.00 4.20
2138 4358 2.074729 ATTCACCCCTCCTCTAGTCG 57.925 55.000 0.00 0.00 0.00 4.18
2139 4359 3.259625 GCATATTCACCCCTCCTCTAGTC 59.740 52.174 0.00 0.00 0.00 2.59
2140 4360 3.243724 GCATATTCACCCCTCCTCTAGT 58.756 50.000 0.00 0.00 0.00 2.57
2141 4361 3.242867 TGCATATTCACCCCTCCTCTAG 58.757 50.000 0.00 0.00 0.00 2.43
2142 4362 3.344535 TGCATATTCACCCCTCCTCTA 57.655 47.619 0.00 0.00 0.00 2.43
2143 4363 2.196742 TGCATATTCACCCCTCCTCT 57.803 50.000 0.00 0.00 0.00 3.69
2144 4364 3.515602 ATTGCATATTCACCCCTCCTC 57.484 47.619 0.00 0.00 0.00 3.71
2145 4365 3.979501 AATTGCATATTCACCCCTCCT 57.020 42.857 0.00 0.00 0.00 3.69
2146 4366 5.357742 AAAAATTGCATATTCACCCCTCC 57.642 39.130 0.00 0.00 0.00 4.30
2147 4367 7.725251 TCATAAAAATTGCATATTCACCCCTC 58.275 34.615 0.00 0.00 0.00 4.30
2148 4368 7.673641 TCATAAAAATTGCATATTCACCCCT 57.326 32.000 0.00 0.00 0.00 4.79
2149 4369 8.907222 ATTCATAAAAATTGCATATTCACCCC 57.093 30.769 0.00 0.00 0.00 4.95
2171 4391 6.371825 ACCCTGAAATTCGTAGTGAAGAATTC 59.628 38.462 0.00 0.00 43.72 2.17
2172 4392 6.149474 CACCCTGAAATTCGTAGTGAAGAATT 59.851 38.462 3.88 0.00 45.66 2.17
2173 4393 5.643777 CACCCTGAAATTCGTAGTGAAGAAT 59.356 40.000 3.88 0.00 40.65 2.40
2174 4394 4.994852 CACCCTGAAATTCGTAGTGAAGAA 59.005 41.667 3.88 0.00 40.65 2.52
2175 4395 4.282449 TCACCCTGAAATTCGTAGTGAAGA 59.718 41.667 8.62 0.00 40.65 2.87
2176 4396 4.566004 TCACCCTGAAATTCGTAGTGAAG 58.434 43.478 8.62 0.00 40.65 3.02
2177 4397 4.562757 CCTCACCCTGAAATTCGTAGTGAA 60.563 45.833 11.17 0.00 41.81 3.18
2178 4398 3.056107 CCTCACCCTGAAATTCGTAGTGA 60.056 47.826 10.07 10.07 0.00 3.41
2179 4399 3.056107 TCCTCACCCTGAAATTCGTAGTG 60.056 47.826 3.62 3.62 0.00 2.74
2180 4400 3.170717 TCCTCACCCTGAAATTCGTAGT 58.829 45.455 0.00 0.00 0.00 2.73
2181 4401 3.887621 TCCTCACCCTGAAATTCGTAG 57.112 47.619 0.00 0.00 0.00 3.51
2182 4402 4.627284 TTTCCTCACCCTGAAATTCGTA 57.373 40.909 0.00 0.00 0.00 3.43
2183 4403 3.502123 TTTCCTCACCCTGAAATTCGT 57.498 42.857 0.00 0.00 0.00 3.85
2185 4405 5.019470 AGGAATTTCCTCACCCTGAAATTC 58.981 41.667 21.03 21.03 45.66 2.17
2186 4406 4.774200 CAGGAATTTCCTCACCCTGAAATT 59.226 41.667 15.24 9.29 45.66 1.82
2187 4407 4.044571 TCAGGAATTTCCTCACCCTGAAAT 59.955 41.667 15.24 0.00 45.66 2.17
2188 4408 3.397618 TCAGGAATTTCCTCACCCTGAAA 59.602 43.478 15.24 0.00 45.66 2.69
2189 4409 2.986019 TCAGGAATTTCCTCACCCTGAA 59.014 45.455 15.24 0.00 45.66 3.02
2190 4410 2.573462 CTCAGGAATTTCCTCACCCTGA 59.427 50.000 15.24 8.53 45.66 3.86
2191 4411 2.307098 ACTCAGGAATTTCCTCACCCTG 59.693 50.000 15.24 4.52 45.66 4.45
2192 4412 2.307098 CACTCAGGAATTTCCTCACCCT 59.693 50.000 15.24 0.00 45.66 4.34
2193 4413 2.305927 TCACTCAGGAATTTCCTCACCC 59.694 50.000 15.24 0.00 45.66 4.61
2194 4414 3.703001 TCACTCAGGAATTTCCTCACC 57.297 47.619 15.24 0.00 45.66 4.02
2195 4415 4.899502 TCTTCACTCAGGAATTTCCTCAC 58.100 43.478 15.24 0.00 45.66 3.51
2196 4416 5.072329 AGTTCTTCACTCAGGAATTTCCTCA 59.928 40.000 15.24 1.30 45.66 3.86
2197 4417 5.555966 AGTTCTTCACTCAGGAATTTCCTC 58.444 41.667 15.24 0.57 45.66 3.71
2198 4418 6.271159 AGTAGTTCTTCACTCAGGAATTTCCT 59.729 38.462 12.37 12.37 41.70 3.36
2199 4419 6.468543 AGTAGTTCTTCACTCAGGAATTTCC 58.531 40.000 7.39 7.39 36.88 3.13
2200 4420 7.572168 GCAAGTAGTTCTTCACTCAGGAATTTC 60.572 40.741 0.00 0.00 36.88 2.17
2201 4421 6.205658 GCAAGTAGTTCTTCACTCAGGAATTT 59.794 38.462 0.00 0.00 36.88 1.82
2202 4422 5.703130 GCAAGTAGTTCTTCACTCAGGAATT 59.297 40.000 0.00 0.00 36.88 2.17
2203 4423 5.221722 TGCAAGTAGTTCTTCACTCAGGAAT 60.222 40.000 0.00 0.00 36.88 3.01
2204 4424 4.100963 TGCAAGTAGTTCTTCACTCAGGAA 59.899 41.667 0.00 0.00 36.88 3.36
2205 4425 3.641436 TGCAAGTAGTTCTTCACTCAGGA 59.359 43.478 0.00 0.00 36.88 3.86
2206 4426 3.993081 CTGCAAGTAGTTCTTCACTCAGG 59.007 47.826 0.00 0.00 36.88 3.86
2207 4427 3.431572 GCTGCAAGTAGTTCTTCACTCAG 59.568 47.826 0.00 0.00 36.88 3.35
2208 4428 3.393800 GCTGCAAGTAGTTCTTCACTCA 58.606 45.455 0.00 0.00 36.88 3.41
2209 4429 2.410053 CGCTGCAAGTAGTTCTTCACTC 59.590 50.000 0.00 0.00 36.88 3.51
2210 4430 2.408050 CGCTGCAAGTAGTTCTTCACT 58.592 47.619 0.00 0.00 39.87 3.41
2211 4431 1.461127 CCGCTGCAAGTAGTTCTTCAC 59.539 52.381 0.00 0.00 35.30 3.18
2212 4432 1.343142 TCCGCTGCAAGTAGTTCTTCA 59.657 47.619 0.00 0.00 35.30 3.02
2213 4433 2.080286 TCCGCTGCAAGTAGTTCTTC 57.920 50.000 0.00 0.00 35.30 2.87
2214 4434 2.543777 TTCCGCTGCAAGTAGTTCTT 57.456 45.000 0.00 0.00 35.30 2.52
2215 4435 2.770164 ATTCCGCTGCAAGTAGTTCT 57.230 45.000 0.00 0.00 35.30 3.01
2216 4436 3.933332 ACTTATTCCGCTGCAAGTAGTTC 59.067 43.478 0.00 0.00 35.30 3.01
2217 4437 3.939066 ACTTATTCCGCTGCAAGTAGTT 58.061 40.909 0.00 0.00 35.30 2.24
2218 4438 3.611766 ACTTATTCCGCTGCAAGTAGT 57.388 42.857 0.00 0.00 35.30 2.73
2219 4439 4.683832 AGTACTTATTCCGCTGCAAGTAG 58.316 43.478 9.07 0.00 34.93 2.57
2220 4440 4.679662 GAGTACTTATTCCGCTGCAAGTA 58.320 43.478 0.00 3.00 35.30 2.24
2221 4441 3.522553 GAGTACTTATTCCGCTGCAAGT 58.477 45.455 0.00 4.02 35.30 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.