>input_sequence_86128
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---ATGATCCCGGAGGGCGCGGCGGAGCTGGTGGCCCTGCTGGCCCCCCTGCTCGTCGTCGTGGGCGTGGCCGCGGTGAT
CGCGTCGGCGTCGGCGGGCGGGAGCGCGCGCGAGGCGGAGGCGCAGGTGGAGGCTCAGGCGAGGGAGTGGGCGCGGTTCG
TGTTCGGCTCCTCGGAGGACGCGGAGCTCGTCGATGGTGCCGGCGGCCGGGCCGACCCCCGGTGGCGCGTGGACGGGCTG
AGCTAG--------------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G269000
CCGGTCATCTACCTACAAAAATGTATATTCTCAGCTTATATTATTTCACATATCTCATTCTGCTCTGTACTGAACTTCCC
TTGAATTGCTTTATGTTGAAAGTAGAAAATAATTTACCAAGGGTTAGTTGGGATTCAATTCAATCAATGGTTAGTTG---
------TGAATATTTTTTACGCATATCAATCCATGACACAAGTTTGTATGATTTCTGACATGTTTCTGCCAATGTAGCAT
GTCATTTTGTGAAAAAGTATTATGACAGTTTCTACAGTCACCCCCAGATTAATTAAACTGCAAGATTTGATAACAAGCTT
GAGACGGTG-----------------------------------------------------------------------
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--------------------------------------------------TTAGATTCAGCTTGCTCCTATTCCTAAGAG
CATCTCCAGCCGTTGCAGCCCCCAAGAGTACTACCAAGCCAAAGCGAAATAGAAGTGCATGAGGAGGGCATCTTTCCAGC
CACACCCTATCCCAACCAAAAATTTGTAAAGGAAATGATTAGGTGCGCCAAGAAAAAAGATATGTGGGGAGACACGTTTC
GCCGAAACTTC----------------CGCCGGCGTTCCCAAGAGCC---------------------------------
---------------------------------------CCCAACGCGCTGGGTTTCGCCTGGATTTGCCGGCATTATTT
TGAC----------------------------------------------------------------------------
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----------------GATGCTCTAAGCCCAAAGGGGAGGCGCTGGCTTCTGTGGAGGGGG----GCTCAACCGCCGGAG
CCCCAACCAACCACAACCCCACGAGACGAGCACCCGGACCGGAATTCCCACGGAGACAGGGAACCATAAAGCGTGCAGAC
TGTGCAC------------CAAATCCTCTTCTCCATCCCC-----------------GTTCTTCGATAGCTTTAGGCATT
TCATGGTCCGAAAGTGAAAGGATCTCCGAGGCCTTTGCGTCCGCGCTCACACGATGCATGGCTGCTGGTTGGCGGTTGCG
CTGCACGAGAAAGCAGCAGCTAGCCAGCCAGCTAGCGCGAGGCGGCGCGGCGCCCCTATTATACGTACGACGCTGCATGA
TGCCTGCACATCCGCCATTCCCCGACGCGCAGTCTGTCT------------------T--CTTCTTCCGCCGGCGCACGC
ACGATGATCCCGGAGGGCGCGGCGGAGCTGGTGGCCCTGCTGGCCCCCCTGCTCGTCGTCGTGGGCGTGGCCGCGGTGAT
CGCGTCGGCGTCGGCGGGCGGGAGCGCGCGCGAGGCGGAGGCGCAGGTGGAGGCTCAGGCGAGGGAGTGGGCGCGGTTCG
TGTTCGGCTCCTCGGAGGACGCGGAGCTCGTCGATGGTGCCGGCGGCCGGGCCGACCCCCGGTGGCGCGTGGACGGGCTG
AGCTAGTGGCCGTGCACTGCGCACGGCGCACGGTGCACGCACGCGCATGCCAGCTCCATTCTCGTCGGCTCGTGTACGAG
GACAAACAGTACGGGGTACCGTATAGAT----TTGTTGCAACTTGCAAGCGTCGGGTTTCAACCTAGTATATTTGTTGCT
AATTACTAATAGCAGATAAATTTCATGTCGCAAATGCTATTTCTTCATGTTGCGGATGTTAAGCAGAGAAATTTCATTGT
TGCGAGTGTTGCCGTTGTTAACAGTCTCTAGTTTATCATGGCTGTAGTTACTGTCACAACACGA--AGATGATACTTTGT
GTGCGGTCTTAGAGCATCTAAAGTCGGATTTGGCAAATTCAACCCCTCAAACGCCCGCAGACACGTCCGAG-CGCGTTCG
TCGACAGTGACCTGTCAAGTCTCGAATAATCCATTCTACAACCGGATATCTCAAATTAGAAACCTCAAATCCATACTATT
ACATGCAACGTAAACCTAACATTAAGCGGAGCTCATCTAGCTCTGCTGTGCCCATGCTCGACGGCCGGCTGCGCTCCCTA
GAGTGTTGG-TCCGGTCGCCAGCGAGGTAGAGTAGGACTTGGGACACAAGCCAGCTCACGGGACTCGAGGCACCGCTGTT
TCCCATTC-GTACTCTTTCTCATCATATCTCGGATCCCTGATGGTGCCGGTAGACGTCAGATCGATGATGGATCCGTCCT
GGGAGGAGCCA-CGACGTCCACCA-----CGGTTGTGGCACCCGCATTGGTGCACCATAC-GGGTGCCGAAGAATGTGAC
TCCGCCTCGCCAATGTCCACCACCGCAAGGGCTGTCGCCGCCTCCCGCACCTGCTGCCTCGCACGGCAGGCACGCCGTGC
CATGTTTGCGTCGGACGACGCTGAAAGTGCGTTATATCGACTAGAGGAGGGGTGAATATGCAATTTTTATGAATTCTTCA
CTACGAATTTCAGGGTGAGGAAATTCCTGAGTGAAGAACTACTTGCAGCGGAATAAGTACTC
>chr4D_4
---GTCATCTACCTACAAAAATGTATATTCTGAGCTTATATTATTTCACATATCTCATTCTGCTCTGTATTGAACTTTCC
TTGAATTGCTTTATGTTGAAAGTAGAAAATAATTTATCAACGATTAGCTATGATTCGATTCAACCAACGGTTACCACTTA
TCCGTCTCACTAATTTTTATGCTTATAATCTTCTGCAAGAACTTTTTGCATTCATACCAATTGAGATTAGCCAGTAAGAC
ATGTACAAGATTCAAGTTAAAACTTGAAATCATGGTACTAATATATACATATTTTTTTCCTTGGATAATCCTTCACTTTT
AGAAAAATATGTAGTTTGTAGTGGTAATAACATGTTAAATTTTCATGTTTTTTCTTGTACTCAAAAGGTTTGCGATCACA
TGGTTCTTTAAAAAAAACTTAAAAGACCTACAAAACTTTGTATATTGTGATGAAATCCATCTTTTTCCCCTCTTGGGCGA
TAGTATATATGTCAAAATACAAAAGAAAAAATGTAAATTTTTAGTACTGATTAAATTCAGCTATATTTTTGGAAGTGTAT
AAGGCTCGATCTACTGCAAGTTAGTAGGTAGATGATAGGATTGTAATGTAATTTCACATTTCATAGACTGTATGCAACTT
GGTCTTTTTAAAAAAAAATCATGCATTGTGTAGTTGCACATTTATAAGTTGTCTCCCGGCTTTAGCTGAAACGCGCCCCC
AACAGGCCCTCCCAGAAGTTTTTTCCGCGCCGGCGTTCAAAAATCGGCCCAGTCGCGCTCCCAGGAGCACGTTTTTCGCC
GGCTTGGGCCGAAATCGGCGCCGGCGGCCTCAGGCCGAACCCGGCGCGCTGGGTGCGCCGGGGCGAGCGGTTTTGGCGTG
AAAGAGCCGCGGGCCCGCCGAGTTAGCGGCACGCGCCTCGTCTTCCCCAGAACGCCTCGGTTTCCGGCGGGGAATCAATG
GCAAGGCTGCTGCCGGTCAGCCTTGCGATTGATTCCTCACGGGCGGCGCTTCACGGGCTGGCGGGCGCGGCGACGCCTCC
CCTTCCGCCACGCGTTCACACCACCTGGGGCTATAAAACCAGAGGCTTCCCCTCGCCGCTGGCCACACCAGCCCGAGCCG
CCGAGCCCAAACCAGCCGCCGTGCTGCCCATCCGCCGTCGAGCTCTGCCGCTCTCCCCTTCCCTTCCTTTCCCCTTTCCC
TCTCCATGGCCGAACGTTTCCCCGGCAACGCCGCGGCGGCCAACGGCTTCGGCCGCCGCTCGCTCCAGGAGTGGGAGGCG
TGGCTCCTGTTCGAGGCCAACATCCCGGCGCCGCCGGACATGCGCGCCGGGCCGGCGGGGTGGAGGCTCAGCAACGGGGG
CGTCCCCATCCCCCCAACGCCGACGCGTGCCCCGGCATCTTCGCCGCCGAGGTCGACCGCGTGCGTTCGTCCCTGACGGA
CGAGCAGCGCGCCCTCCCCTAGTACGCCGCCGACAACCACGCGGCGTGGCGTAGTACTTCCAGCGCCGGCAGGCGCAGCG
GCTGGCGTCCACGAACGGGACACCGGTGGTGGGCGGCATCAAGAACAGCGACGGCCGCCGCGTCTGGTGGGGCGTCCCCG
GCCACACACTCCACGAGGTATTGTTGTGCCTCGAGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGTCTCCTCCTCCTCGTCCTCCTCTCAGTCGTCCTCCCGC
TCCTACTCCCACTCTTCCGGCTCGCCGGCGCTGTTCGGCGTCAATGCCGAGCCCGCTGCGGAGACGCCGCTCGGCCGGCA
CACCCGCAGCGCCGGCATCGTCATCAACGAGGGTGGCAGGCGCGCCCCCTCCTCGGCTCCTCCGCGCTACGTCAAGCCAA
AGATGGAGCCGGGGCTCGCCACCGTCAAGATGGAGCCGGGGCTCCCCGTCGTGAAGACGGAGCCCGGGCTCGCCGGCGGC
GTCCAGGAGGAGGAGCTCGACGACACGGCGGCCCTTAAGTGGGCGCGCGACGACTGGGCGCAGACAGAGCTGCAGCGCCA
GTGCCTCGCCTTCGAGCGCTTCGAAGCTCGGCGCCGTGGCCGGGACAAGGGAGCGTGGTCGTCATCGATGACAACGACGA
CAATGACGTGCCGCCGCCGCCGGTCTGCCATGGAGACGCCGGGGAGGGGTCCAGCAGGGGCGATCGCGCAATCAAGAAGG
AGATGGCCGCCGCCGACGACGTGGACGGCGGCGACGTAGGCGACTCCGCCGCACTCAGCGACTTCTTCGCCCCGTAGTTG
GTTTTTTTTAAATAACTTATGTAACGCCGAATATGTCCAATATTATGTCAAGTTTGCCGAATTTAGCCGAACTTTACCGA
ATTTGGGTTTTTTCAAAATAAAACCCGCGTCTGGGGGGTGACCCTCGCCGATTTTAGCGCAGCGTAAAATCGTCGCCTAG
GGGGCCAACGGCTGGGGATGCTCTAAGACCAAAGGGGAGGCGCTGGCTTCTGTGGAGGGGTGCTAGCTCAACCGCCGGAT
CCCCAACCAACCACAACCCCACGAGACGGGCGCCGGAACTGGAATTCCCACGGAGACAGGGAACCATAAAGCGA------
----CAGAGTATGCACGAACAAATCTTCTTCTTCCTCCCAGT------------ACAGTTCTTCCGTAGCTTTAAGCGTT
TCATGGCCCGAAAGCGAAATGATCTCCGAGGCCTTTGCGCCCCCGCTCACACGATGCATGGCTGCTGGTTGGCGGTTGCG
CTGCACGAGAAAGCAGCG----GCCCGCCAGCTAGGGCGAGGCGGCGCGGCGCCCCTAT-ATACGCACGACGCTGCATGA
TGCCTGCACATCCGCCATTCCCTGACGCGCACAGGTTCGTTCGGAGCTAGCAGGCTGT--CTTCTACCGTCGGCGCGCGC
AGGATGATCCCGGAGGGCGCGGCGGAGCTGGTGTCCCTGCTGGCACCCCTGCTCGTCGTCGTGGGCGTGGCCGCGGTGAT
CGCGTCGGCGTCGGCGGGCGGGGGCGCGCGCGAGGCGGAGGCGCAGGTGGAGGCTCAGGCGAGGGAGTGGGCGCGGTTCG
TGTTCGGCTCCTCGGAGGACGCGGAGCTCGTCGATGGTGCCGGCGGCCGGGCCGACCCCCGGTGGCGCGTGGACGGGCTG
GGCTAGTAGCCGTGCAC-------GGCGCACGGTGCACGCACGCGTATGCCTGCTCCATTCTCGTCGGCTCGTGTAGGAG
GCCAAGCAGTATGGGGTGCCGTATGGAGTAGATTGTTGCAACTTGCAAGCGTCGGGTTTCAACCTATA---CTTGTTGCT
AATTACTGATAGCAGATAAATTTCATGTCGCAAATGGCTTTTCTTCATGTTGCAAATGTTAAGCAGAGGAATTTCATTGT
TGCAAGTGTTGCCGTCGTTAAAAGTCGGTAATTTATTATGGCTGTTGTCACTGTCACAACACGAACAGATAATAGTTTGT
GTGCGGTCTTAGAGCATCTACGGCCGGACTTGGCAAATCCGACCCCTCAAATACCCACGAATGCGTTT-GGACGCGTTCG
TTAACAGTGACCGGTCAAGTCTTAAATAGTCCATTCTACAGCCGGATATCTCAAATTAGGAACCTTAAATCCATACTATT
ACATGCAGCGTAAACCTAATATTAAGCGAAGCTCGTCTGGCACCACCGTGCCCATGCCCGACGGCCGGCTGCACTCCCCA
GAGTGTTGG-TCCAGTCGCCGGCGAGGTGGAGTAGGACATGGGACACGAGCCGGCTCAAGGGACTCGAGGTGCCGCCGTC
TCCCATGCCCTACTCTTCCTCGTTGGAGCTCGGATCCCTGACGGTGCCGGTGGATGTCAGATCGATGATGGATCCGTCCT
GGGAGGAGCTGGTGACGTCCACCACGACGCGGTTGTGGCGCCCGCACTGGTGCACCATAGGAGGCGCCGAAGAATGCGAC
TCCGCCTCGCCAACGTCCACCGCTGCAAGGGCTGCCGCCGCCTCCCGCGCCCACTGCCTCGCACGGCGGGCACACCGCGC
CATGTTTGCGTCGGGCGACGC-----------------------------------------------------------
--------------------------------------------------------------
>chr4B_4
GTCTAT--CTACCTACAAAAATGTATATTCTGAGCTTATATTATTT-ACATATCTCATTCTGCTCTGTACTGAACTTCCC
TTGAATTGCTTTATGTTGAAAGTAGAAAATAATTTACCAACAGTTAGTTGTGATTCAATTCAACCAACGGTTAGTTG---
------TGAATATTT-----------------------------------------------------------------
----------------------------------------------------TTAAACTGCAAGATTTGATAAGAAGCTT
GAGACGGTC-----------------------------------------------------------------------
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--------------------------------------------------TTAGATTCAGCTTGCTCCTATTC-------
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----------------------CTAAGCCCAAAGGGGAGGCGCTGGCTGCTGTGGAGCGG-----GCTCAACCGCCGGAT
CCCCAACCAACCACAACCCCACGAGACGAGCGCCGGGACTGGAATTCCCACGGAGACAGGGAACCATAAAGCTATCAGGC
AGAGCAGAGTGTACACCAACAAATCCTCTTCTTCCTCCCAGTCCCAGTCCCAGTACAGTTCTTCCGTAGCTTTAAGCGTT
TCATGGCCCGAAAGCAAAATGACCTCCGAGGCCTTTGCGTCCGCGCTCACACGATGCATGGCTGCTGGTTGGCGGTTGCG
CTGCACGAGAAAGCAGCAGCCAGCCAGCCAGCTAGCGCGAGGCGGCGCGGCGCCCCTAT-ATACGCACCACGCTGCATGA
TGCCTGCACACCCGCCATTCCCCGACGCGCATAGGTTCGTTCGGAGCTAGCAGGCGGCGGCTTCTCCCGTCGGCGCGCGC
AGGATGATCCCGGAGGGCGCGGCGGAGCTGGTGTCCCTGCTGGCCCCCCTGCTCGTCGTCGTGGGCGTGGCCGCGGTGAT
CGCGTCGGCGTCGGCGGGCGGGGGCGCGCGCGAGGCGGAGGCGCAGGTGGAGGCTCGGGCGAGGGAGTGGGCGCGGTTCG
TGTTCGGCTCCTCGGAGGACGCGGAGCTCGTCGATGGTGCCGGTGGCCGAGCGGACCCCCGGTGGCGCGTGGATGGGGTG
AGCTAGTGGCCGTGCAC-------GGCGCACGGTGCACGCACGCGCATGTCTCCTCCATTCTCGTCGGCTCGTGTGCGAG
GCCAAACAGTACGGGGTACCGTATGGAGTAGATTGTTGCAACTTGCAAGCGTCGGTTCTCACCCTATG---TTTGTTGCT
AATTACTGATAGCAGATAAATTT---------------------------------------------------------
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>chr3B_1548
TTGTGACCAGTCTATA----------------------------------------------------------------
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----------AGAGCATCTATAGCCGTACTTTGCAAATCTGGCCCCTCAAACGCCCGCGGACGCGCTC-AGGGCA-TCCA
CGGACACTGATCGGTCATGCCTCAAATAATGCAATCCACATCTGGATACCTCAAATTAGAAACATCAAATCCATATTATT
ACATGCAAGGTAG--CGATCTTTAAACGGAGCTCGTCCGCTCGT--CGTGCCCATGTTCGACGGCCGATTGCGCTCCCTA
GAGTGTTTG-CCCGGTCGCCGGCAAGGTAGAGTAGGGCATGGGATACGAGCCAGCTCACGGGACTCAAG-CGCCGCCGTC
TACCATGC-CTACTCTTCCTCGTCGGAGCCCGTAACCCATTGGGTGCCGGTGAACGTCAGATCGATGATGGATCCGTCCT
GGGACGAGCCAGCGACGTCCACCACGACGCGGTTGCGGCGCCCGGACTGGTGCACCGTACGGGGAGCCAGAGAATGTGAC
TCCGCCTCGCCGACGTCCACCGCGGCAAGCGCTGCCGCCCCCGCTCCCGC------------------------------
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>chr3B_1562
AGAGCA--------------------------------------------------------------------------
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------------------TACAAACGGACTTAGCAAATCTGATCCCTCAAACACCTGCGGACGCGTCCGAGTGCA-GACG
CGGACAGTGACTGATCGCATCTCAAATATTTGATT-TACAACTTGATATCTTAAATTAGAAACCACAAATCCATATTATT
ACATGCAATGTAAACATATCTTTAAGCGGAGCTCGTCCGGCTCCACCCTGCCCATGTCCGTGACA-GACTGCGCTCCCCA
GAGTGTTGG-TCCGGTCGCCGACAAGGTAGAGTAAGGCATGGGAC--GAGCCGACTCACAGGACTCAAGGCGCCGCCGTC
TCCCATGCCCTACTCTTCCTCGTCGGAGTCCAGAACCCGAACAGTGCTGGTGAATGTCAGATCAATGATGGATTCGTCCT
AAGACGAGCCGGCGACATCCACCACGATGCGGTTGCAGTGTCCGGATTGGTGGACCATACGGGGTGCCGAAGAATGTGAC
TCCGCCTCGCCAACGTCCACCGACGCGAGGGTTGTCGCCGCCTCCCACGCCCGCTGCCTCGCACGACGGGCATGTTGTGC
TATGTTTGCGTCGAACGAACGC----------------------------------------------------------
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>chr7D_1564
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------------AGCATCTACAGCCGGACATGGCAAATCCGACCCCTTAAACGTCCATGGACGCGCCC-GGGCGTGTCCG
CAGACAATGACTGGCCACATATCAAATATTTGATTCTATAACCGGATACCTCAAATTAGAATCCTCAAATCCATATTATT
ACATGCAACGTAAATCGATCTTTAAGCGGAGCTCGCTCGGCTGCACCGTGCCCATGTCCGGCGGCCGGCTGCACTCCCCA
GAGTGTTGGGTCCAGTCGTCGGCAAGGTACAGTAGGGCATGGGACACGAGCCAGCTCATGGAACTCAAGGTGCCGCCGTC
TCCCATGCTCTACTTTTCCTCGTTAGAGCCCATAACCCGGACGGTGTCGGTGGACGTCAGATCGATGATGGATCCGTCCT
GAGGTGAGCCAGCGACATCCACCATGGCACGGTTCCGGCGCCCGGAGTGGTCCACCATACAGGGCGCCGGAG-ATGCGAC
TCTGCCTCGCCAACGTCCACCGCCGCGAGGGTTGTTGCCGCCTCCCGCGCCAGCTGCCTCGCATGGCGAGCATGTCGCGC
CATGTTTGCGTCGGATGAC-------------------------------------------------------------
--------------------------------------------------------------
>SNPs
SS-----------------------------S------------------------------------------------
----------------------------------------S---------S------------S---S------------
-------------------S--S---S-SSSSS--SS-S--S---S-SSSS-SSSSSSS--SSSSS-SSSSSS---SS-S
S-SSSSSS-SSSS--SS--SS-SSSS-SS-SS-SSSSSS-SSSSSSSSS--S----------------------------
--------S-----------------------------------------------------------------------
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-------------------------------------------------------------------------SSSSS-S
S-SSSS-SSS-SSSSSSSSSSSSSSSS---SSSSSS--SSSSSSSSSSSS-SSSSSSSS-SSSS--SSSS-S-SSSSSSS
SSSSSSS-SSSSS--SS-SS-SSSSS-SSSSSSSSSS-SSSSSSSSSSSSSSSSSSSS-S-S-SSSS-S-SSSSSSSSS-
SS-SSSS-S-----------------------------SS--SSSSS---------------------------------
------------------------------------------SS----------SSSS-SS--SSSSSSSSSSSSSSS-S
SS-S----------------------------------------------------------------------------
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------------------------------------------------------------S------------------S
-------------------------------S--S----S---------------------------------SS---S-
S-S---S-------------------------S-S----S------------------------SS--------S--S--
------S-------S----S------------------------------------------------------------
--------------------S--------------------------------------S-----S--------------
-------------------------------SSSSS--S--------------------------S---S------S---
-S-------------------------------S----------------------------------------------
----------------------S---------------------------------------------------------
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-----------------SSSSSSS---------------------------S----------------------------
-S----------------------S--S--------------------------------------SSSSS---------
-------S----------------------------SSS--------------SS-------------S-----------
---S-----------S-----S----SS--S-----S--------S--S---------------------S---S-----
--------------------S--S----S---------S-S-----------------S---S-----------------
-S----------S----------S--------------------------------------------------------
----------------------------------S---S-----S-S---------------------------------
--------------------S-----------------S--------S-----------------------S----S--S
------S--S-------S---S---S-S-------------S---------S----------------------------
---------------------------------------S----------------------------------------
-------------S-------S--------------------------S--S---------------S------------
---------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_632
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----------------------------------------------------AAGTGCATGAGGAGGGCATC--------
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>reverse_4072
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-----------------------------------------------------------------------ACCGCTGTT
TCCCATTCGTA---------------------------------------------------------------------
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