Multiple sequence alignment - TraesCS4A01G266900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G266900 chr4A 100.000 4685 0 0 1 4685 579427268 579431952 0.000000e+00 8652
1 TraesCS4A01G266900 chr4A 86.076 158 20 2 3247 3403 60670618 60670774 8.060000e-38 169
2 TraesCS4A01G266900 chr4D 86.674 1921 147 57 2008 3901 22948481 22946643 0.000000e+00 2028
3 TraesCS4A01G266900 chr4D 88.592 561 42 13 1437 1983 22949109 22948557 0.000000e+00 662
4 TraesCS4A01G266900 chr4D 86.762 491 38 12 4180 4661 22945894 22945422 5.370000e-144 521
5 TraesCS4A01G266900 chr4D 85.586 444 46 11 6 446 22950819 22950391 2.570000e-122 449
6 TraesCS4A01G266900 chr4D 83.476 351 22 11 809 1136 22949869 22949532 1.270000e-75 294
7 TraesCS4A01G266900 chr4D 86.911 191 23 2 461 650 22950316 22950127 3.670000e-51 213
8 TraesCS4A01G266900 chr4D 86.709 158 19 2 3247 3403 403148207 403148363 1.730000e-39 174
9 TraesCS4A01G266900 chr4D 88.028 142 17 0 3514 3655 403148369 403148510 8.060000e-38 169
10 TraesCS4A01G266900 chr4D 95.506 89 4 0 726 814 22949979 22949891 4.890000e-30 143
11 TraesCS4A01G266900 chr4B 86.656 1896 142 54 2794 4661 34723368 34721556 0.000000e+00 1997
12 TraesCS4A01G266900 chr4B 90.839 1299 76 17 1435 2707 34724647 34723366 0.000000e+00 1700
13 TraesCS4A01G266900 chr4B 81.644 730 66 32 738 1411 34725426 34724709 1.150000e-150 544
14 TraesCS4A01G266900 chr4B 88.068 176 11 4 269 435 34727742 34727568 2.860000e-47 200
15 TraesCS4A01G266900 chr4B 90.141 142 14 0 3514 3655 499901349 499901490 8.010000e-43 185
16 TraesCS4A01G266900 chr4B 87.342 158 18 2 3247 3403 499901187 499901343 3.720000e-41 180
17 TraesCS4A01G266900 chr4B 81.281 203 15 8 460 656 34725811 34725626 4.890000e-30 143
18 TraesCS4A01G266900 chr6A 75.870 431 82 14 3240 3664 531395169 531394755 2.860000e-47 200
19 TraesCS4A01G266900 chr6D 80.682 176 34 0 3240 3415 386291569 386291394 2.270000e-28 137
20 TraesCS4A01G266900 chr6B 80.682 176 34 0 3240 3415 577184692 577184517 2.270000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G266900 chr4A 579427268 579431952 4684 False 8652.000000 8652 100.000000 1 4685 1 chr4A.!!$F2 4684
1 TraesCS4A01G266900 chr4D 22945422 22950819 5397 True 615.714286 2028 87.643857 6 4661 7 chr4D.!!$R1 4655
2 TraesCS4A01G266900 chr4B 34721556 34727742 6186 True 916.800000 1997 85.697600 269 4661 5 chr4B.!!$R1 4392

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
354 359 0.036388 TGATGAAGGGCGTTGGAGAC 60.036 55.0 0.00 0.0 0.00 3.36 F
706 2613 0.038618 TACGCATGGGATCGAATCGG 60.039 55.0 17.76 0.0 0.00 4.18 F
1364 3541 0.035317 GGGTGCCGCTCATCATGATA 59.965 55.0 8.15 0.0 0.00 2.15 F
2747 5051 0.040204 CCTTCACTTGGATGCCCCTT 59.960 55.0 0.00 0.0 35.38 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1345 3522 0.035317 TATCATGATGAGCGGCACCC 59.965 55.0 18.72 0.0 0.00 4.61 R
2604 4908 0.527817 CGCGCCCGTAAGATTTCTCT 60.528 55.0 0.00 0.0 43.02 3.10 R
3050 5361 0.037326 AAACGGCAGATCGAGCTGAA 60.037 50.0 33.37 0.0 40.83 3.02 R
4404 7270 0.178068 ATGTATGTGCCAGACCGTCC 59.822 55.0 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
64 65 2.433664 GGCGGAGTGGGTGTTACG 60.434 66.667 0.00 0.00 0.00 3.18
86 87 0.248539 GACGGTGGCAGATCGACTAC 60.249 60.000 10.96 0.00 0.00 2.73
87 88 0.680280 ACGGTGGCAGATCGACTACT 60.680 55.000 10.96 0.00 0.00 2.57
88 89 0.248661 CGGTGGCAGATCGACTACTG 60.249 60.000 10.45 10.45 37.22 2.74
90 91 1.103803 GTGGCAGATCGACTACTGGA 58.896 55.000 14.75 0.00 35.05 3.86
91 92 1.683917 GTGGCAGATCGACTACTGGAT 59.316 52.381 14.75 0.00 35.05 3.41
105 108 1.094073 CTGGATTCAGAGCAAGGGCG 61.094 60.000 0.00 0.00 43.49 6.13
106 109 3.720800 CTGGATTCAGAGCAAGGGCGT 62.721 57.143 0.00 0.00 43.49 5.68
123 126 1.658686 CGTGGGGTCGGAGAGAGAAG 61.659 65.000 0.00 0.00 36.95 2.85
155 158 2.419620 CGGGTTTTTGTGTGGGCC 59.580 61.111 0.00 0.00 0.00 5.80
156 159 2.427245 CGGGTTTTTGTGTGGGCCA 61.427 57.895 0.00 0.00 0.00 5.36
157 160 1.445518 GGGTTTTTGTGTGGGCCAG 59.554 57.895 6.40 0.00 0.00 4.85
171 174 1.002868 GCCAGGTGTGTCAGATGCT 60.003 57.895 0.00 0.00 0.00 3.79
173 176 1.162698 CCAGGTGTGTCAGATGCTTG 58.837 55.000 0.00 0.00 0.00 4.01
182 185 1.968017 CAGATGCTTGCGTGGTGGT 60.968 57.895 0.00 0.00 0.00 4.16
184 187 1.081242 GATGCTTGCGTGGTGGTTG 60.081 57.895 0.00 0.00 0.00 3.77
208 211 2.046217 GGTCCGCAAACCTCCTCC 60.046 66.667 0.00 0.00 36.32 4.30
209 212 2.593956 GGTCCGCAAACCTCCTCCT 61.594 63.158 0.00 0.00 36.32 3.69
210 213 1.079057 GTCCGCAAACCTCCTCCTC 60.079 63.158 0.00 0.00 0.00 3.71
221 224 3.928754 ACCTCCTCCTCATGTATGCTTA 58.071 45.455 0.00 0.00 0.00 3.09
238 241 3.623960 TGCTTACGGTTTATGGGAATTCG 59.376 43.478 0.00 0.00 0.00 3.34
240 243 4.444536 CTTACGGTTTATGGGAATTCGGA 58.555 43.478 0.00 0.00 0.00 4.55
244 247 1.332686 GTTTATGGGAATTCGGACGGC 59.667 52.381 0.00 0.00 0.00 5.68
248 251 2.404186 GGGAATTCGGACGGCCAAC 61.404 63.158 8.76 0.00 0.00 3.77
259 262 2.046700 GGCCAACCCGATTCACGA 60.047 61.111 0.00 0.00 45.77 4.35
260 263 2.106683 GGCCAACCCGATTCACGAG 61.107 63.158 0.00 0.00 45.77 4.18
261 264 2.750888 GCCAACCCGATTCACGAGC 61.751 63.158 0.00 0.00 45.77 5.03
262 265 2.106683 CCAACCCGATTCACGAGCC 61.107 63.158 0.00 0.00 45.77 4.70
263 266 2.125673 AACCCGATTCACGAGCCG 60.126 61.111 0.00 0.00 45.77 5.52
264 267 2.642254 AACCCGATTCACGAGCCGA 61.642 57.895 1.50 0.00 45.77 5.54
265 268 2.582498 CCCGATTCACGAGCCGAC 60.582 66.667 1.50 0.00 45.77 4.79
266 269 2.949678 CCGATTCACGAGCCGACG 60.950 66.667 1.50 0.00 45.77 5.12
328 331 0.392998 CCCTAGACGTTTGGCAGCAT 60.393 55.000 0.00 0.00 0.00 3.79
354 359 0.036388 TGATGAAGGGCGTTGGAGAC 60.036 55.000 0.00 0.00 0.00 3.36
363 368 1.810030 CGTTGGAGACGCCCTAAGC 60.810 63.158 0.00 0.00 45.86 3.09
383 395 1.719600 GTCTGCTAGAGTTGGCTGTG 58.280 55.000 0.00 0.00 32.70 3.66
394 406 1.547372 GTTGGCTGTGCATTTCCTCAT 59.453 47.619 0.00 0.00 0.00 2.90
446 2154 3.245797 CACGAGATAATGATAGGCACGG 58.754 50.000 0.00 0.00 0.00 4.94
447 2155 2.891580 ACGAGATAATGATAGGCACGGT 59.108 45.455 0.00 0.00 0.00 4.83
448 2156 3.245797 CGAGATAATGATAGGCACGGTG 58.754 50.000 3.15 3.15 0.00 4.94
451 2159 1.502690 TAATGATAGGCACGGTGGGT 58.497 50.000 10.60 0.00 0.00 4.51
453 2161 1.729586 ATGATAGGCACGGTGGGTAT 58.270 50.000 10.60 0.00 0.00 2.73
459 2167 1.910671 AGGCACGGTGGGTATAAAAGA 59.089 47.619 10.60 0.00 0.00 2.52
462 2170 3.697542 GGCACGGTGGGTATAAAAGATTT 59.302 43.478 10.60 0.00 0.00 2.17
469 2177 6.987992 CGGTGGGTATAAAAGATTTGCTACTA 59.012 38.462 0.00 0.00 0.00 1.82
470 2178 7.170998 CGGTGGGTATAAAAGATTTGCTACTAG 59.829 40.741 0.00 0.00 0.00 2.57
474 2182 7.307219 GGGTATAAAAGATTTGCTACTAGCGTG 60.307 40.741 3.59 0.00 46.26 5.34
476 2184 5.941948 AAAAGATTTGCTACTAGCGTGTT 57.058 34.783 3.59 0.00 46.26 3.32
477 2185 5.532025 AAAGATTTGCTACTAGCGTGTTC 57.468 39.130 3.59 0.00 46.26 3.18
479 2187 4.177026 AGATTTGCTACTAGCGTGTTCAG 58.823 43.478 3.59 0.00 46.26 3.02
480 2188 2.363788 TTGCTACTAGCGTGTTCAGG 57.636 50.000 3.59 0.00 46.26 3.86
481 2189 1.541379 TGCTACTAGCGTGTTCAGGA 58.459 50.000 3.59 0.00 46.26 3.86
485 2239 3.614390 GCTACTAGCGTGTTCAGGAAGTT 60.614 47.826 0.00 0.00 0.00 2.66
490 2244 0.042188 CGTGTTCAGGAAGTTGCACG 60.042 55.000 8.00 8.00 42.39 5.34
512 2266 3.069729 GGTGGTCGCTTTCCTACATATCT 59.930 47.826 0.00 0.00 0.00 1.98
521 2275 2.394632 TCCTACATATCTTGCCGGTGT 58.605 47.619 1.90 0.00 0.00 4.16
561 2320 3.244770 TGTCACCATCTAACTTTGACCCC 60.245 47.826 0.00 0.00 36.54 4.95
605 2364 4.567195 TCCACTGGGATCTGCACT 57.433 55.556 0.00 0.00 38.64 4.40
607 2366 1.748122 CCACTGGGATCTGCACTGC 60.748 63.158 0.00 0.00 35.59 4.40
608 2367 1.002990 CACTGGGATCTGCACTGCA 60.003 57.895 3.11 3.11 36.92 4.41
650 2409 1.000843 GTGAATTTGCCCTTCACCACC 59.999 52.381 10.45 0.00 44.26 4.61
696 2603 2.461110 GCTTGTCCGTACGCATGGG 61.461 63.158 10.49 8.44 0.00 4.00
697 2604 1.216977 CTTGTCCGTACGCATGGGA 59.783 57.895 17.76 0.00 0.00 4.37
700 2607 1.660575 GTCCGTACGCATGGGATCG 60.661 63.158 17.76 17.95 31.43 3.69
701 2608 1.824760 TCCGTACGCATGGGATCGA 60.825 57.895 17.76 3.38 0.00 3.59
702 2609 1.066752 CCGTACGCATGGGATCGAA 59.933 57.895 17.76 0.00 0.00 3.71
704 2611 1.060713 CGTACGCATGGGATCGAATC 58.939 55.000 17.76 0.00 0.00 2.52
705 2612 1.060713 GTACGCATGGGATCGAATCG 58.939 55.000 17.76 0.00 0.00 3.34
706 2613 0.038618 TACGCATGGGATCGAATCGG 60.039 55.000 17.76 0.00 0.00 4.18
707 2614 1.006220 CGCATGGGATCGAATCGGA 60.006 57.895 3.11 0.00 0.00 4.55
709 2616 1.363744 GCATGGGATCGAATCGGATC 58.636 55.000 1.76 4.81 41.67 3.36
710 2617 1.338105 GCATGGGATCGAATCGGATCA 60.338 52.381 1.76 0.00 43.69 2.92
711 2618 2.341257 CATGGGATCGAATCGGATCAC 58.659 52.381 1.76 6.60 45.21 3.06
713 2620 2.071688 GGGATCGAATCGGATCACAG 57.928 55.000 1.76 0.00 44.53 3.66
714 2621 1.423395 GGATCGAATCGGATCACAGC 58.577 55.000 1.76 0.00 43.69 4.40
715 2622 1.056103 GATCGAATCGGATCACAGCG 58.944 55.000 1.76 0.00 41.93 5.18
716 2623 0.668535 ATCGAATCGGATCACAGCGA 59.331 50.000 1.76 0.00 0.00 4.93
717 2624 0.454196 TCGAATCGGATCACAGCGAA 59.546 50.000 1.76 0.00 0.00 4.70
718 2625 0.848942 CGAATCGGATCACAGCGAAG 59.151 55.000 0.00 0.00 0.00 3.79
750 2657 1.654220 CGTGCACAGTGGAAAAGGG 59.346 57.895 18.64 0.00 0.00 3.95
753 2660 0.754957 TGCACAGTGGAAAAGGGGTG 60.755 55.000 1.84 0.00 0.00 4.61
838 2772 2.282887 CCACCAACCTTTCGGGGG 60.283 66.667 0.00 0.00 40.23 5.40
840 2774 3.503839 ACCAACCTTTCGGGGGCA 61.504 61.111 0.00 0.00 40.03 5.36
841 2775 2.676471 CCAACCTTTCGGGGGCAG 60.676 66.667 0.00 0.00 40.03 4.85
842 2776 2.676471 CAACCTTTCGGGGGCAGG 60.676 66.667 0.00 0.00 40.03 4.85
843 2777 3.979497 AACCTTTCGGGGGCAGGG 61.979 66.667 0.00 0.00 40.03 4.45
908 2856 1.522580 GCTCCTCTGTCCCGCATTC 60.523 63.158 0.00 0.00 0.00 2.67
913 2861 1.002624 TCTGTCCCGCATTCCCAAC 60.003 57.895 0.00 0.00 0.00 3.77
929 2898 0.320771 CAACAACACCTCTCCCTCCG 60.321 60.000 0.00 0.00 0.00 4.63
950 2919 0.911045 TTGCTCTGCCCTCTCCATCA 60.911 55.000 0.00 0.00 0.00 3.07
953 2922 2.025767 CTCTGCCCTCTCCATCACCG 62.026 65.000 0.00 0.00 0.00 4.94
954 2923 3.746949 CTGCCCTCTCCATCACCGC 62.747 68.421 0.00 0.00 0.00 5.68
959 2928 2.038813 TCTCCATCACCGCCTCCA 59.961 61.111 0.00 0.00 0.00 3.86
960 2929 1.383109 TCTCCATCACCGCCTCCAT 60.383 57.895 0.00 0.00 0.00 3.41
992 2961 2.303311 CGGGGGAAGAAGAAGAAGAAGT 59.697 50.000 0.00 0.00 0.00 3.01
993 2962 3.514309 CGGGGGAAGAAGAAGAAGAAGTA 59.486 47.826 0.00 0.00 0.00 2.24
1014 2990 4.521062 GCCATGTCTCCGCTCGCT 62.521 66.667 0.00 0.00 0.00 4.93
1017 2993 1.588403 CATGTCTCCGCTCGCTGAG 60.588 63.158 4.23 4.23 0.00 3.35
1126 3112 1.216990 GTCCCAACCTCCCATCTCAT 58.783 55.000 0.00 0.00 0.00 2.90
1140 3219 4.324874 CCCATCTCATCTTCCTTCCAAGTT 60.325 45.833 0.00 0.00 0.00 2.66
1200 3288 6.872020 TCCCATCTGACGTTTCTTTAGTTTAG 59.128 38.462 0.00 0.00 0.00 1.85
1202 3290 7.172703 CCCATCTGACGTTTCTTTAGTTTAGTT 59.827 37.037 0.00 0.00 0.00 2.24
1247 3409 1.445871 CCCGGTAAAAACCCTTCTCG 58.554 55.000 0.00 0.00 0.00 4.04
1249 3411 2.071540 CCGGTAAAAACCCTTCTCGTC 58.928 52.381 0.00 0.00 0.00 4.20
1252 3419 3.185797 CGGTAAAAACCCTTCTCGTCTTG 59.814 47.826 0.00 0.00 0.00 3.02
1255 3422 5.066893 GGTAAAAACCCTTCTCGTCTTGTTT 59.933 40.000 0.00 0.00 0.00 2.83
1256 3423 5.654603 AAAAACCCTTCTCGTCTTGTTTT 57.345 34.783 0.00 0.00 37.47 2.43
1257 3424 5.654603 AAAACCCTTCTCGTCTTGTTTTT 57.345 34.783 0.00 0.00 33.50 1.94
1258 3425 6.762702 AAAACCCTTCTCGTCTTGTTTTTA 57.237 33.333 0.00 0.00 33.50 1.52
1261 3428 5.055144 ACCCTTCTCGTCTTGTTTTTACTC 58.945 41.667 0.00 0.00 0.00 2.59
1262 3429 4.451435 CCCTTCTCGTCTTGTTTTTACTCC 59.549 45.833 0.00 0.00 0.00 3.85
1263 3430 5.298347 CCTTCTCGTCTTGTTTTTACTCCT 58.702 41.667 0.00 0.00 0.00 3.69
1264 3431 5.758784 CCTTCTCGTCTTGTTTTTACTCCTT 59.241 40.000 0.00 0.00 0.00 3.36
1265 3432 6.292919 CCTTCTCGTCTTGTTTTTACTCCTTG 60.293 42.308 0.00 0.00 0.00 3.61
1266 3433 5.909477 TCTCGTCTTGTTTTTACTCCTTGA 58.091 37.500 0.00 0.00 0.00 3.02
1285 3452 5.278808 CCTTGATGATCTGTTGCCAATATGG 60.279 44.000 0.00 0.00 41.55 2.74
1293 3460 5.537188 TCTGTTGCCAATATGGTGTTTTTC 58.463 37.500 0.00 0.00 40.46 2.29
1321 3498 5.204409 TCTTTGTTAGACGTTTGGCTCTA 57.796 39.130 0.00 0.00 0.00 2.43
1344 3521 1.532868 CATCTTAGCTATGCGTTGGCC 59.467 52.381 0.00 0.00 38.85 5.36
1345 3522 0.529773 TCTTAGCTATGCGTTGGCCG 60.530 55.000 0.00 0.00 38.85 6.13
1364 3541 0.035317 GGGTGCCGCTCATCATGATA 59.965 55.000 8.15 0.00 0.00 2.15
1366 3543 2.093500 GGGTGCCGCTCATCATGATATA 60.093 50.000 8.15 0.00 0.00 0.86
1369 3546 4.747108 GGTGCCGCTCATCATGATATATAC 59.253 45.833 8.15 2.05 0.00 1.47
1382 3559 6.990349 TCATGATATATACCTGCATGATGCTG 59.010 38.462 19.19 17.59 45.31 4.41
1397 3574 5.738619 TGATGCTGGTACTTTCTCTGTAA 57.261 39.130 0.00 0.00 0.00 2.41
1400 3577 6.995686 TGATGCTGGTACTTTCTCTGTAAAAA 59.004 34.615 0.00 0.00 0.00 1.94
1490 3705 4.193865 GGCATCGTACTTTTAGGCCTTAA 58.806 43.478 12.58 4.88 37.00 1.85
1495 3710 7.307219 GCATCGTACTTTTAGGCCTTAATACTG 60.307 40.741 12.58 5.49 0.00 2.74
1496 3711 6.576185 TCGTACTTTTAGGCCTTAATACTGG 58.424 40.000 12.58 0.00 0.00 4.00
1497 3712 6.155049 TCGTACTTTTAGGCCTTAATACTGGT 59.845 38.462 12.58 5.33 0.00 4.00
1505 3720 5.530243 AGGCCTTAATACTGGTCTACTTCT 58.470 41.667 0.00 0.00 36.39 2.85
1508 3723 7.790314 AGGCCTTAATACTGGTCTACTTCTATT 59.210 37.037 0.00 0.00 36.39 1.73
1515 3730 9.490083 AATACTGGTCTACTTCTATTTACACCT 57.510 33.333 0.00 0.00 0.00 4.00
1516 3731 7.793948 ACTGGTCTACTTCTATTTACACCTT 57.206 36.000 0.00 0.00 0.00 3.50
1517 3732 7.612677 ACTGGTCTACTTCTATTTACACCTTG 58.387 38.462 0.00 0.00 0.00 3.61
1529 3744 2.309136 ACACCTTGCCTTGCCTAATT 57.691 45.000 0.00 0.00 0.00 1.40
1625 3844 2.636412 GGCCGGCTCCTTTTTGTCC 61.636 63.158 28.56 0.00 0.00 4.02
1645 3870 3.419828 CTGTGACGGCACTGCAAA 58.580 55.556 24.38 0.00 45.36 3.68
1650 3875 1.468520 GTGACGGCACTGCAAATATGT 59.531 47.619 16.00 0.00 41.84 2.29
1652 3877 2.161410 TGACGGCACTGCAAATATGTTC 59.839 45.455 2.82 0.00 0.00 3.18
1653 3878 1.472480 ACGGCACTGCAAATATGTTCC 59.528 47.619 2.82 0.00 0.00 3.62
1654 3879 1.745087 CGGCACTGCAAATATGTTCCT 59.255 47.619 2.82 0.00 0.00 3.36
1655 3880 2.942376 CGGCACTGCAAATATGTTCCTA 59.058 45.455 2.82 0.00 0.00 2.94
1656 3881 3.376859 CGGCACTGCAAATATGTTCCTAA 59.623 43.478 2.82 0.00 0.00 2.69
1657 3882 4.036734 CGGCACTGCAAATATGTTCCTAAT 59.963 41.667 2.82 0.00 0.00 1.73
1715 3942 3.390521 AATCAGACGCTGCCCGGA 61.391 61.111 0.73 0.00 42.52 5.14
1839 4066 1.202891 ACTGCACCCTTCAGTTAACCC 60.203 52.381 0.88 0.00 41.61 4.11
1893 4123 6.335471 TGATCTGAATTTCATGTGTTGCTT 57.665 33.333 0.00 0.00 0.00 3.91
1896 4126 6.005583 TCTGAATTTCATGTGTTGCTTCTC 57.994 37.500 0.00 0.00 0.00 2.87
1908 4138 1.077858 GCTTCTCCCAAGCCCTCAG 60.078 63.158 0.00 0.00 37.30 3.35
1926 4156 2.190578 GCCATCTTCAGGGACCCG 59.809 66.667 4.40 0.00 0.00 5.28
1968 4202 7.222872 ACATCCTGGTAAGAATGATCAAGATC 58.777 38.462 0.00 3.12 38.29 2.75
1969 4203 7.072202 ACATCCTGGTAAGAATGATCAAGATCT 59.928 37.037 11.04 1.09 38.60 2.75
1970 4204 7.443302 TCCTGGTAAGAATGATCAAGATCTT 57.557 36.000 19.42 19.42 38.60 2.40
1971 4205 7.504403 TCCTGGTAAGAATGATCAAGATCTTC 58.496 38.462 19.18 10.38 38.60 2.87
1975 4209 7.092264 TGGTAAGAATGATCAAGATCTTCCCTT 60.092 37.037 21.07 12.31 38.60 3.95
2021 4309 7.988313 CGTATCGTTGTTTTGTTTATTTGTGTG 59.012 33.333 0.00 0.00 0.00 3.82
2061 4350 5.291178 TGTTCATGAATGCTTTTTCACCTG 58.709 37.500 12.12 0.00 38.37 4.00
2063 4352 4.873817 TCATGAATGCTTTTTCACCTGTG 58.126 39.130 0.00 0.00 38.37 3.66
2067 4356 4.646945 TGAATGCTTTTTCACCTGTGGTAA 59.353 37.500 0.00 0.00 32.11 2.85
2071 4360 5.355596 TGCTTTTTCACCTGTGGTAAATTG 58.644 37.500 0.00 0.00 32.11 2.32
2169 4461 0.946221 CAGCGAGGATATTCGGCCAC 60.946 60.000 2.24 0.00 40.79 5.01
2183 4475 1.685224 GCCACCCTGATGTCAAGGA 59.315 57.895 4.70 0.00 31.90 3.36
2219 4516 5.233988 GTCAGTATCAGTTGCTCTGTTCTT 58.766 41.667 8.75 0.00 43.97 2.52
2236 4533 8.744008 TCTGTTCTTTAGAAATTAGTCGACTG 57.256 34.615 28.12 7.09 35.58 3.51
2237 4534 8.573885 TCTGTTCTTTAGAAATTAGTCGACTGA 58.426 33.333 28.12 20.78 35.58 3.41
2327 4625 4.422073 TGTAAGGTATGGGATTGAGCAG 57.578 45.455 0.00 0.00 0.00 4.24
2425 4723 9.310716 GGTAACTTAACTAGACATGTTCCATAC 57.689 37.037 0.00 0.00 0.00 2.39
2449 4753 7.386851 ACTGCAGCACTCTTATTAAGTCTTAA 58.613 34.615 15.27 7.49 0.00 1.85
2458 4762 9.804758 ACTCTTATTAAGTCTTAACCAAGATCG 57.195 33.333 20.87 16.01 42.66 3.69
2463 4767 2.168728 AGTCTTAACCAAGATCGCTCCC 59.831 50.000 0.00 0.00 42.66 4.30
2468 4772 1.580059 ACCAAGATCGCTCCCCTAAA 58.420 50.000 0.00 0.00 0.00 1.85
2469 4773 1.209747 ACCAAGATCGCTCCCCTAAAC 59.790 52.381 0.00 0.00 0.00 2.01
2495 4799 3.367395 GGAGGAAACTTGGCTGTAAATGC 60.367 47.826 0.00 0.00 44.43 3.56
2497 4801 4.662278 AGGAAACTTGGCTGTAAATGCTA 58.338 39.130 0.00 0.00 37.44 3.49
2499 4803 5.716703 AGGAAACTTGGCTGTAAATGCTATT 59.283 36.000 0.00 0.00 37.44 1.73
2500 4804 6.889722 AGGAAACTTGGCTGTAAATGCTATTA 59.110 34.615 0.00 0.00 37.44 0.98
2597 4901 1.509923 GACCTTACTACTGCGCCGT 59.490 57.895 10.01 10.01 0.00 5.68
2723 5027 1.021390 CAGGTAGTTTCAGGCGCAGG 61.021 60.000 10.83 0.00 0.00 4.85
2733 5037 0.107703 CAGGCGCAGGAATACCTTCA 60.108 55.000 10.83 0.00 45.36 3.02
2735 5039 0.107654 GGCGCAGGAATACCTTCACT 60.108 55.000 10.83 0.00 45.36 3.41
2737 5041 1.398390 GCGCAGGAATACCTTCACTTG 59.602 52.381 0.30 0.00 45.36 3.16
2738 5042 2.009774 CGCAGGAATACCTTCACTTGG 58.990 52.381 0.00 0.00 45.36 3.61
2739 5043 2.354704 CGCAGGAATACCTTCACTTGGA 60.355 50.000 0.00 0.00 45.36 3.53
2740 5044 3.682718 CGCAGGAATACCTTCACTTGGAT 60.683 47.826 0.00 0.00 45.36 3.41
2741 5045 3.629398 GCAGGAATACCTTCACTTGGATG 59.371 47.826 0.00 0.00 45.36 3.51
2742 5046 3.629398 CAGGAATACCTTCACTTGGATGC 59.371 47.826 0.00 0.00 45.36 3.91
2743 5047 2.952310 GGAATACCTTCACTTGGATGCC 59.048 50.000 0.00 0.00 32.70 4.40
2744 5048 2.736670 ATACCTTCACTTGGATGCCC 57.263 50.000 0.00 0.00 0.00 5.36
2745 5049 0.623723 TACCTTCACTTGGATGCCCC 59.376 55.000 0.00 0.00 0.00 5.80
2746 5050 1.142688 ACCTTCACTTGGATGCCCCT 61.143 55.000 0.00 0.00 35.38 4.79
2747 5051 0.040204 CCTTCACTTGGATGCCCCTT 59.960 55.000 0.00 0.00 35.38 3.95
2748 5052 1.284785 CCTTCACTTGGATGCCCCTTA 59.715 52.381 0.00 0.00 35.38 2.69
2781 5085 8.084073 TCAAAATTGTTCATGGACTGATTTCTC 58.916 33.333 15.12 0.00 32.72 2.87
2787 5091 6.169094 GTTCATGGACTGATTTCTCTCTGAA 58.831 40.000 0.00 0.00 32.72 3.02
2788 5092 5.728471 TCATGGACTGATTTCTCTCTGAAC 58.272 41.667 0.00 0.00 33.88 3.18
2789 5093 4.543590 TGGACTGATTTCTCTCTGAACC 57.456 45.455 0.00 0.00 33.88 3.62
2790 5094 3.903714 TGGACTGATTTCTCTCTGAACCA 59.096 43.478 0.00 0.00 33.88 3.67
2831 5135 2.427245 CCCTTCCGTCGGCATCTCT 61.427 63.158 6.34 0.00 0.00 3.10
2878 5182 4.897076 TCGCTACATCCTGGAGGTAAATAA 59.103 41.667 20.34 1.98 36.34 1.40
2881 5185 6.018180 CGCTACATCCTGGAGGTAAATAAAAC 60.018 42.308 20.34 5.44 36.34 2.43
2882 5186 7.054751 GCTACATCCTGGAGGTAAATAAAACT 58.945 38.462 20.34 0.00 36.34 2.66
2898 5202 8.723942 AAATAAAACTACTGCCTCATCTAGTG 57.276 34.615 0.00 0.00 0.00 2.74
2899 5203 7.661536 ATAAAACTACTGCCTCATCTAGTGA 57.338 36.000 0.00 0.00 35.05 3.41
2917 5226 7.884257 TCTAGTGAAATGAATCAAATGCAACA 58.116 30.769 0.00 0.00 0.00 3.33
2921 5230 8.842280 AGTGAAATGAATCAAATGCAACATTTT 58.158 25.926 2.88 0.00 37.82 1.82
2922 5231 8.897809 GTGAAATGAATCAAATGCAACATTTTG 58.102 29.630 2.88 4.46 37.82 2.44
3021 5331 4.540153 CGATCCCGGTGAGCATTT 57.460 55.556 0.00 0.00 0.00 2.32
3022 5332 2.311294 CGATCCCGGTGAGCATTTC 58.689 57.895 0.00 0.00 0.00 2.17
3048 5359 5.652014 TCTTCTTCTTCTTCTTGTGCCAAAA 59.348 36.000 0.00 0.00 0.00 2.44
3050 5361 6.469782 TCTTCTTCTTCTTGTGCCAAAATT 57.530 33.333 0.00 0.00 0.00 1.82
3054 5365 6.275335 TCTTCTTCTTGTGCCAAAATTTCAG 58.725 36.000 0.00 0.00 0.00 3.02
3057 5368 3.981211 TCTTGTGCCAAAATTTCAGCTC 58.019 40.909 12.15 9.62 0.00 4.09
3069 5380 0.037326 TTCAGCTCGATCTGCCGTTT 60.037 50.000 11.41 0.00 34.19 3.60
3084 5396 2.979676 TTTCACTGGCCAGCAGCG 60.980 61.111 33.06 18.23 45.17 5.18
3095 5407 1.528586 GCCAGCAGCGATATGTAACTG 59.471 52.381 0.00 0.00 0.00 3.16
3163 5475 5.873164 CCCACACAAACTACAGGTAAGATAC 59.127 44.000 0.00 0.00 0.00 2.24
3170 5482 7.122948 ACAAACTACAGGTAAGATACAGAGAGG 59.877 40.741 0.00 0.00 0.00 3.69
3188 5500 0.106318 GGAAGCCAAGGGATGCATCT 60.106 55.000 25.28 4.53 0.00 2.90
3210 5527 2.414824 CCGTCTGCTCTAGTCTTGTGTC 60.415 54.545 0.00 0.00 0.00 3.67
3233 5550 2.158623 TGGGTTATGACATGATCCTGCC 60.159 50.000 10.62 0.00 0.00 4.85
3357 5677 3.636313 CTACGGCGAGGGCAACGAA 62.636 63.158 16.62 0.00 42.47 3.85
3405 5725 1.068474 CCGACATCAACACCTTCGTC 58.932 55.000 0.00 0.00 0.00 4.20
3416 5736 0.320697 ACCTTCGTCTGGGTAAGCAC 59.679 55.000 0.00 0.00 33.59 4.40
3443 5772 1.592223 CACGGGGAGTCCAGACTTC 59.408 63.158 12.30 0.00 42.66 3.01
3444 5773 1.155390 ACGGGGAGTCCAGACTTCA 59.845 57.895 12.30 0.00 42.66 3.02
3445 5774 0.900647 ACGGGGAGTCCAGACTTCAG 60.901 60.000 12.30 4.23 42.66 3.02
3446 5775 0.612174 CGGGGAGTCCAGACTTCAGA 60.612 60.000 12.30 0.00 42.66 3.27
3476 5805 2.434428 CACCATTGCTGCTCTTCTCTT 58.566 47.619 0.00 0.00 0.00 2.85
3576 5906 1.675641 CGACAAGGAAGGCAAGGGG 60.676 63.158 0.00 0.00 0.00 4.79
3642 5972 1.592669 CACCTCCATGATCGCCGAC 60.593 63.158 0.00 0.00 0.00 4.79
3702 6032 3.817647 GGTAGATGTCATCTTTGATGGGC 59.182 47.826 20.27 2.36 40.76 5.36
3744 6078 0.455972 GTGGTTGTGTGTGTGTGTGC 60.456 55.000 0.00 0.00 0.00 4.57
3746 6080 1.867373 GTTGTGTGTGTGTGTGCGC 60.867 57.895 0.00 0.00 0.00 6.09
3765 6099 4.075910 CGCGCGTGTGAACTGCAT 62.076 61.111 24.19 0.00 0.00 3.96
3780 6124 1.456296 TGCATTGCAGTGATGAGACC 58.544 50.000 14.15 0.00 33.32 3.85
3825 6169 9.734620 ATGATAAAACAAATAACATCCGATGTG 57.265 29.630 14.81 4.76 44.07 3.21
3826 6170 8.951243 TGATAAAACAAATAACATCCGATGTGA 58.049 29.630 14.81 7.94 44.07 3.58
3827 6171 9.950680 GATAAAACAAATAACATCCGATGTGAT 57.049 29.630 14.81 10.06 44.07 3.06
3828 6172 9.734620 ATAAAACAAATAACATCCGATGTGATG 57.265 29.630 14.81 12.80 44.07 3.07
3834 6178 2.028420 CATCCGATGTGATGTGGTGT 57.972 50.000 0.00 0.00 37.85 4.16
3835 6179 3.177997 CATCCGATGTGATGTGGTGTA 57.822 47.619 0.00 0.00 37.85 2.90
3860 6204 4.499188 GCTTGTCGTAGCTGGATGTATGTA 60.499 45.833 0.00 0.00 38.15 2.29
3861 6205 5.585820 TTGTCGTAGCTGGATGTATGTAA 57.414 39.130 0.00 0.00 0.00 2.41
3878 6222 3.713288 TGTAACTCGTCCTGAACTTGTG 58.287 45.455 0.00 0.00 0.00 3.33
3885 6229 2.365582 GTCCTGAACTTGTGTGTGGTT 58.634 47.619 0.00 0.00 0.00 3.67
3892 6236 3.608316 ACTTGTGTGTGGTTTGCAAAT 57.392 38.095 16.21 0.00 0.00 2.32
3901 6245 3.171277 GTGGTTTGCAAATATCTCGTGC 58.829 45.455 16.21 0.00 38.78 5.34
3903 6247 3.119884 TGGTTTGCAAATATCTCGTGCTG 60.120 43.478 16.21 0.00 39.09 4.41
3909 6253 2.126914 AATATCTCGTGCTGAGCGTC 57.873 50.000 0.00 0.00 44.86 5.19
3927 6273 1.152881 CCATGGGACCTAGGCTTGC 60.153 63.158 9.30 0.00 0.00 4.01
3939 6285 1.194218 AGGCTTGCCACTTGTTTGTT 58.806 45.000 14.54 0.00 0.00 2.83
3983 6365 7.812669 CCATAGGGTAATCAACAACAAAGAAAC 59.187 37.037 0.00 0.00 0.00 2.78
3985 6367 6.805713 AGGGTAATCAACAACAAAGAAACAG 58.194 36.000 0.00 0.00 0.00 3.16
3987 6369 6.695713 GGGTAATCAACAACAAAGAAACAGAC 59.304 38.462 0.00 0.00 0.00 3.51
3989 6371 5.913137 ATCAACAACAAAGAAACAGACCA 57.087 34.783 0.00 0.00 0.00 4.02
3990 6372 5.913137 TCAACAACAAAGAAACAGACCAT 57.087 34.783 0.00 0.00 0.00 3.55
3991 6373 6.279513 TCAACAACAAAGAAACAGACCATT 57.720 33.333 0.00 0.00 0.00 3.16
3992 6374 6.098679 TCAACAACAAAGAAACAGACCATTG 58.901 36.000 0.00 0.00 0.00 2.82
3993 6375 5.659440 ACAACAAAGAAACAGACCATTGT 57.341 34.783 0.00 0.00 32.78 2.71
3995 6377 6.795399 ACAACAAAGAAACAGACCATTGTAG 58.205 36.000 0.00 0.00 31.33 2.74
3996 6378 6.601613 ACAACAAAGAAACAGACCATTGTAGA 59.398 34.615 0.00 0.00 31.33 2.59
3997 6379 6.619801 ACAAAGAAACAGACCATTGTAGAC 57.380 37.500 0.00 0.00 29.89 2.59
3998 6380 6.119536 ACAAAGAAACAGACCATTGTAGACA 58.880 36.000 0.00 0.00 29.89 3.41
3999 6381 6.038271 ACAAAGAAACAGACCATTGTAGACAC 59.962 38.462 0.00 0.00 29.89 3.67
4000 6382 5.290493 AGAAACAGACCATTGTAGACACA 57.710 39.130 0.00 0.00 0.00 3.72
4061 6444 9.579932 AGGAAAAATTGTAGACAGAGAGAAAAT 57.420 29.630 0.00 0.00 0.00 1.82
4062 6445 9.833182 GGAAAAATTGTAGACAGAGAGAAAATC 57.167 33.333 0.00 0.00 0.00 2.17
4082 6465 2.946990 TCTCAAGGGTTCGTTTGGTTTC 59.053 45.455 0.00 0.00 0.00 2.78
4093 6476 5.952526 TCGTTTGGTTTCCTCCTAAATTC 57.047 39.130 0.00 0.00 0.00 2.17
4095 6478 4.082408 CGTTTGGTTTCCTCCTAAATTCCC 60.082 45.833 0.00 0.00 0.00 3.97
4096 6479 3.359695 TGGTTTCCTCCTAAATTCCCG 57.640 47.619 0.00 0.00 0.00 5.14
4106 6489 2.169769 CCTAAATTCCCGTGGAGTAGCA 59.830 50.000 0.00 0.00 31.21 3.49
4107 6490 2.871096 AAATTCCCGTGGAGTAGCAA 57.129 45.000 0.00 0.00 31.21 3.91
4113 6496 1.006832 CCGTGGAGTAGCAAATTCCG 58.993 55.000 0.00 0.00 33.60 4.30
4115 6498 2.073816 CGTGGAGTAGCAAATTCCGTT 58.926 47.619 0.00 0.00 33.60 4.44
4116 6499 2.159707 CGTGGAGTAGCAAATTCCGTTG 60.160 50.000 0.00 0.00 33.60 4.10
4117 6500 2.812011 GTGGAGTAGCAAATTCCGTTGT 59.188 45.455 0.00 0.00 33.60 3.32
4118 6501 3.252458 GTGGAGTAGCAAATTCCGTTGTT 59.748 43.478 0.00 0.00 33.60 2.83
4119 6502 3.500680 TGGAGTAGCAAATTCCGTTGTTC 59.499 43.478 0.00 0.00 33.60 3.18
4120 6503 3.119955 GGAGTAGCAAATTCCGTTGTTCC 60.120 47.826 0.00 0.00 0.00 3.62
4121 6504 3.751518 AGTAGCAAATTCCGTTGTTCCT 58.248 40.909 0.00 0.00 0.00 3.36
4122 6505 3.751698 AGTAGCAAATTCCGTTGTTCCTC 59.248 43.478 0.00 0.00 0.00 3.71
4123 6506 1.535462 AGCAAATTCCGTTGTTCCTCG 59.465 47.619 0.00 0.00 0.00 4.63
4137 6520 2.247699 TCCTCGGGGAATTTCAGAGA 57.752 50.000 0.00 3.30 38.93 3.10
4138 6521 2.111384 TCCTCGGGGAATTTCAGAGAG 58.889 52.381 0.00 10.42 38.93 3.20
4160 6543 5.178797 AGAAGTAAGATGGTGATTCCGTTG 58.821 41.667 0.00 0.00 39.52 4.10
4165 6548 2.039746 AGATGGTGATTCCGTTGTTCCA 59.960 45.455 0.00 0.00 39.52 3.53
4175 6558 2.112029 GTTGTTCCAAACGGTGCCT 58.888 52.632 0.00 0.00 0.00 4.75
4224 7084 8.980481 ATATCCGTCAGAAATTCCTATGTTTT 57.020 30.769 0.00 0.00 0.00 2.43
4228 7088 6.072175 CCGTCAGAAATTCCTATGTTTTTCCA 60.072 38.462 0.00 0.00 0.00 3.53
4251 7111 6.406849 CCAGTTTTCCTTTGGATGTTCAAGAA 60.407 38.462 0.00 0.00 33.76 2.52
4267 7127 4.059511 TCAAGAAAAGATTGGTACGCGAA 58.940 39.130 15.93 0.00 0.00 4.70
4269 7129 4.859629 AGAAAAGATTGGTACGCGAATC 57.140 40.909 15.93 11.89 39.25 2.52
4334 7200 5.180117 ACACACTCTTGATTACAATCACTGC 59.820 40.000 4.14 0.00 44.54 4.40
4343 7209 5.643348 TGATTACAATCACTGCGACAAGATT 59.357 36.000 0.45 0.00 40.32 2.40
4346 7212 4.569943 ACAATCACTGCGACAAGATTACT 58.430 39.130 0.00 0.00 0.00 2.24
4353 7219 3.194861 TGCGACAAGATTACTGCCATAC 58.805 45.455 0.00 0.00 0.00 2.39
4355 7221 3.001330 GCGACAAGATTACTGCCATACAC 59.999 47.826 0.00 0.00 0.00 2.90
4356 7222 4.433615 CGACAAGATTACTGCCATACACT 58.566 43.478 0.00 0.00 0.00 3.55
4357 7223 4.268644 CGACAAGATTACTGCCATACACTG 59.731 45.833 0.00 0.00 0.00 3.66
4358 7224 5.165961 ACAAGATTACTGCCATACACTGT 57.834 39.130 0.00 0.00 0.00 3.55
4359 7225 6.294361 ACAAGATTACTGCCATACACTGTA 57.706 37.500 0.00 0.00 0.00 2.74
4360 7226 6.106673 ACAAGATTACTGCCATACACTGTAC 58.893 40.000 0.00 0.00 0.00 2.90
4361 7227 4.933330 AGATTACTGCCATACACTGTACG 58.067 43.478 0.00 0.00 0.00 3.67
4362 7228 4.401519 AGATTACTGCCATACACTGTACGT 59.598 41.667 0.00 0.00 0.00 3.57
4382 7248 2.428890 GTCTGTACCAGCAGCAGAGTAT 59.571 50.000 0.00 0.00 39.56 2.12
4383 7249 2.428530 TCTGTACCAGCAGCAGAGTATG 59.571 50.000 0.00 0.00 34.72 2.39
4402 7268 3.046968 TGCAGTATAGGCAACGAAACA 57.953 42.857 0.00 0.00 46.39 2.83
4403 7269 3.403968 TGCAGTATAGGCAACGAAACAA 58.596 40.909 0.00 0.00 46.39 2.83
4404 7270 3.435327 TGCAGTATAGGCAACGAAACAAG 59.565 43.478 0.00 0.00 46.39 3.16
4435 7301 4.097741 TGGCACATACATTTATTCAGGTGC 59.902 41.667 0.00 0.00 46.97 5.01
4447 7314 1.951209 TCAGGTGCAAGGGAGATGTA 58.049 50.000 0.00 0.00 0.00 2.29
4448 7315 2.265367 TCAGGTGCAAGGGAGATGTAA 58.735 47.619 0.00 0.00 0.00 2.41
4542 7409 4.028490 GTGATCACCGTGGGGGCA 62.028 66.667 15.31 0.00 40.62 5.36
4562 7429 2.351336 GATCGGCCGGTGTACTCCTG 62.351 65.000 27.83 6.71 0.00 3.86
4569 7436 1.409427 CCGGTGTACTCCTGGATCTTC 59.591 57.143 15.44 0.00 0.00 2.87
4574 7441 4.425520 GTGTACTCCTGGATCTTCGAAAG 58.574 47.826 0.00 0.00 0.00 2.62
4587 7454 2.680913 CGAAAGCTTCAGGGCCACG 61.681 63.158 6.18 0.00 0.00 4.94
4603 7470 2.161609 GCCACGTCAACCTGGATAAAAG 59.838 50.000 0.00 0.00 0.00 2.27
4604 7471 3.670625 CCACGTCAACCTGGATAAAAGA 58.329 45.455 0.00 0.00 0.00 2.52
4606 7473 4.700213 CCACGTCAACCTGGATAAAAGAAT 59.300 41.667 0.00 0.00 0.00 2.40
4607 7474 5.878116 CCACGTCAACCTGGATAAAAGAATA 59.122 40.000 0.00 0.00 0.00 1.75
4608 7475 6.037172 CCACGTCAACCTGGATAAAAGAATAG 59.963 42.308 0.00 0.00 0.00 1.73
4609 7476 6.816640 CACGTCAACCTGGATAAAAGAATAGA 59.183 38.462 0.00 0.00 0.00 1.98
4610 7477 7.333423 CACGTCAACCTGGATAAAAGAATAGAA 59.667 37.037 0.00 0.00 0.00 2.10
4640 7507 2.352617 GCATCCTCGCCAAAATGTTTCA 60.353 45.455 0.00 0.00 0.00 2.69
4643 7510 2.293122 TCCTCGCCAAAATGTTTCAGTG 59.707 45.455 0.00 0.00 0.00 3.66
4647 7514 4.297510 TCGCCAAAATGTTTCAGTGATTG 58.702 39.130 0.00 0.00 0.00 2.67
4648 7515 4.050553 CGCCAAAATGTTTCAGTGATTGT 58.949 39.130 0.00 0.00 0.00 2.71
4650 7517 5.689514 CGCCAAAATGTTTCAGTGATTGTTA 59.310 36.000 0.00 0.00 0.00 2.41
4651 7518 6.345723 CGCCAAAATGTTTCAGTGATTGTTAC 60.346 38.462 0.00 0.00 0.00 2.50
4652 7519 6.478344 GCCAAAATGTTTCAGTGATTGTTACA 59.522 34.615 0.00 0.00 0.00 2.41
4653 7520 7.306749 GCCAAAATGTTTCAGTGATTGTTACAG 60.307 37.037 0.00 0.00 0.00 2.74
4654 7521 7.169645 CCAAAATGTTTCAGTGATTGTTACAGG 59.830 37.037 0.00 0.00 0.00 4.00
4655 7522 4.829064 TGTTTCAGTGATTGTTACAGGC 57.171 40.909 0.00 0.00 0.00 4.85
4656 7523 4.203226 TGTTTCAGTGATTGTTACAGGCA 58.797 39.130 0.00 0.00 0.00 4.75
4657 7524 4.826733 TGTTTCAGTGATTGTTACAGGCAT 59.173 37.500 0.00 0.00 0.00 4.40
4658 7525 5.156355 GTTTCAGTGATTGTTACAGGCATG 58.844 41.667 0.00 0.00 0.00 4.06
4659 7526 4.284829 TCAGTGATTGTTACAGGCATGA 57.715 40.909 4.84 0.00 0.00 3.07
4660 7527 4.256110 TCAGTGATTGTTACAGGCATGAG 58.744 43.478 4.84 0.00 0.00 2.90
4661 7528 4.020307 TCAGTGATTGTTACAGGCATGAGA 60.020 41.667 4.84 0.00 0.00 3.27
4662 7529 4.331992 CAGTGATTGTTACAGGCATGAGAG 59.668 45.833 4.84 0.00 0.00 3.20
4663 7530 3.624861 GTGATTGTTACAGGCATGAGAGG 59.375 47.826 4.84 0.00 0.00 3.69
4664 7531 2.787473 TTGTTACAGGCATGAGAGGG 57.213 50.000 4.84 0.00 0.00 4.30
4665 7532 1.656587 TGTTACAGGCATGAGAGGGT 58.343 50.000 4.84 0.00 0.00 4.34
4666 7533 2.827755 TGTTACAGGCATGAGAGGGTA 58.172 47.619 4.84 0.00 0.00 3.69
4667 7534 3.384168 TGTTACAGGCATGAGAGGGTAT 58.616 45.455 4.84 0.00 0.00 2.73
4668 7535 4.552674 TGTTACAGGCATGAGAGGGTATA 58.447 43.478 4.84 0.00 0.00 1.47
4669 7536 4.344102 TGTTACAGGCATGAGAGGGTATAC 59.656 45.833 4.84 0.00 0.00 1.47
4670 7537 3.046283 ACAGGCATGAGAGGGTATACA 57.954 47.619 4.84 0.00 0.00 2.29
4671 7538 2.968574 ACAGGCATGAGAGGGTATACAG 59.031 50.000 4.84 0.00 0.00 2.74
4672 7539 2.968574 CAGGCATGAGAGGGTATACAGT 59.031 50.000 5.01 0.00 0.00 3.55
4673 7540 4.152647 CAGGCATGAGAGGGTATACAGTA 58.847 47.826 5.01 0.00 0.00 2.74
4674 7541 4.021894 CAGGCATGAGAGGGTATACAGTAC 60.022 50.000 5.01 0.00 0.00 2.73
4675 7542 3.895656 GGCATGAGAGGGTATACAGTACA 59.104 47.826 5.01 0.00 0.00 2.90
4676 7543 4.021894 GGCATGAGAGGGTATACAGTACAG 60.022 50.000 5.01 0.00 0.00 2.74
4677 7544 4.021894 GCATGAGAGGGTATACAGTACAGG 60.022 50.000 5.01 1.67 0.00 4.00
4678 7545 4.180377 TGAGAGGGTATACAGTACAGGG 57.820 50.000 5.01 0.00 0.00 4.45
4679 7546 3.117246 TGAGAGGGTATACAGTACAGGGG 60.117 52.174 5.01 0.00 0.00 4.79
4680 7547 3.136896 AGAGGGTATACAGTACAGGGGA 58.863 50.000 5.01 0.00 0.00 4.81
4681 7548 3.140519 AGAGGGTATACAGTACAGGGGAG 59.859 52.174 5.01 0.00 0.00 4.30
4682 7549 2.863879 AGGGTATACAGTACAGGGGAGT 59.136 50.000 5.01 0.00 0.00 3.85
4683 7550 3.274153 AGGGTATACAGTACAGGGGAGTT 59.726 47.826 5.01 0.00 0.00 3.01
4684 7551 3.387050 GGGTATACAGTACAGGGGAGTTG 59.613 52.174 5.01 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 2.433664 GTAACACCCACTCCGCCG 60.434 66.667 0.00 0.00 0.00 6.46
76 77 3.568007 GCTCTGAATCCAGTAGTCGATCT 59.432 47.826 0.00 0.00 41.16 2.75
78 79 3.291584 TGCTCTGAATCCAGTAGTCGAT 58.708 45.455 0.00 0.00 41.16 3.59
79 80 2.723273 TGCTCTGAATCCAGTAGTCGA 58.277 47.619 0.00 0.00 41.16 4.20
80 81 3.443037 CTTGCTCTGAATCCAGTAGTCG 58.557 50.000 0.00 0.00 41.16 4.18
86 87 1.094073 CGCCCTTGCTCTGAATCCAG 61.094 60.000 0.00 0.00 41.74 3.86
87 88 1.078214 CGCCCTTGCTCTGAATCCA 60.078 57.895 0.00 0.00 34.43 3.41
88 89 1.078143 ACGCCCTTGCTCTGAATCC 60.078 57.895 0.00 0.00 34.43 3.01
90 91 1.377725 CCACGCCCTTGCTCTGAAT 60.378 57.895 0.00 0.00 34.43 2.57
91 92 2.032528 CCACGCCCTTGCTCTGAA 59.967 61.111 0.00 0.00 34.43 3.02
105 108 0.323542 TCTTCTCTCTCCGACCCCAC 60.324 60.000 0.00 0.00 0.00 4.61
106 109 0.033991 CTCTTCTCTCTCCGACCCCA 60.034 60.000 0.00 0.00 0.00 4.96
114 117 1.756561 AGCCCCGCTCTTCTCTCTC 60.757 63.158 0.00 0.00 30.62 3.20
138 141 2.362329 CTGGCCCACACAAAAACCCG 62.362 60.000 0.00 0.00 0.00 5.28
155 158 0.520404 GCAAGCATCTGACACACCTG 59.480 55.000 0.00 0.00 0.00 4.00
156 159 0.952497 CGCAAGCATCTGACACACCT 60.952 55.000 0.00 0.00 0.00 4.00
157 160 1.230635 ACGCAAGCATCTGACACACC 61.231 55.000 0.00 0.00 45.62 4.16
171 174 2.897846 CGGACAACCACCACGCAA 60.898 61.111 0.00 0.00 35.59 4.85
173 176 4.612412 TCCGGACAACCACCACGC 62.612 66.667 0.00 0.00 35.59 5.34
208 211 5.179368 CCCATAAACCGTAAGCATACATGAG 59.821 44.000 0.00 0.00 32.02 2.90
209 212 5.060506 CCCATAAACCGTAAGCATACATGA 58.939 41.667 0.00 0.00 32.02 3.07
210 213 5.060506 TCCCATAAACCGTAAGCATACATG 58.939 41.667 0.00 0.00 32.02 3.21
221 224 2.635714 GTCCGAATTCCCATAAACCGT 58.364 47.619 0.00 0.00 0.00 4.83
238 241 2.822701 GAATCGGGTTGGCCGTCC 60.823 66.667 0.00 2.32 34.97 4.79
240 243 2.359478 GTGAATCGGGTTGGCCGT 60.359 61.111 0.00 0.00 34.97 5.68
244 247 2.106683 GGCTCGTGAATCGGGTTGG 61.107 63.158 0.00 0.00 42.76 3.77
248 251 2.582498 GTCGGCTCGTGAATCGGG 60.582 66.667 0.00 0.00 43.80 5.14
258 261 0.391263 ATCAAAGGGTTCGTCGGCTC 60.391 55.000 0.00 0.00 0.00 4.70
259 262 0.673644 CATCAAAGGGTTCGTCGGCT 60.674 55.000 0.00 0.00 0.00 5.52
260 263 0.953960 ACATCAAAGGGTTCGTCGGC 60.954 55.000 0.00 0.00 0.00 5.54
261 264 2.373540 TACATCAAAGGGTTCGTCGG 57.626 50.000 0.00 0.00 0.00 4.79
262 265 3.306166 GTCATACATCAAAGGGTTCGTCG 59.694 47.826 0.00 0.00 0.00 5.12
263 266 4.250464 TGTCATACATCAAAGGGTTCGTC 58.750 43.478 0.00 0.00 0.00 4.20
264 267 4.280436 TGTCATACATCAAAGGGTTCGT 57.720 40.909 0.00 0.00 0.00 3.85
307 310 0.605589 GCTGCCAAACGTCTAGGGTT 60.606 55.000 0.00 0.00 0.00 4.11
328 331 3.305950 CCAACGCCCTTCATCATCAAAAA 60.306 43.478 0.00 0.00 0.00 1.94
363 368 0.244994 ACAGCCAACTCTAGCAGACG 59.755 55.000 0.00 0.00 0.00 4.18
383 395 4.034510 CCTAACGAGTTCATGAGGAAATGC 59.965 45.833 0.00 0.00 37.23 3.56
394 406 7.442969 ACAAAATACATTCACCTAACGAGTTCA 59.557 33.333 0.00 0.00 0.00 3.18
431 443 2.054799 ACCCACCGTGCCTATCATTAT 58.945 47.619 0.00 0.00 0.00 1.28
435 447 2.385135 TATACCCACCGTGCCTATCA 57.615 50.000 0.00 0.00 0.00 2.15
438 2146 3.106054 TCTTTTATACCCACCGTGCCTA 58.894 45.455 0.00 0.00 0.00 3.93
439 2147 1.910671 TCTTTTATACCCACCGTGCCT 59.089 47.619 0.00 0.00 0.00 4.75
441 2149 4.668289 CAAATCTTTTATACCCACCGTGC 58.332 43.478 0.00 0.00 0.00 5.34
446 2154 7.307219 CGCTAGTAGCAAATCTTTTATACCCAC 60.307 40.741 21.70 0.00 42.58 4.61
447 2155 6.704493 CGCTAGTAGCAAATCTTTTATACCCA 59.296 38.462 21.70 0.00 42.58 4.51
448 2156 6.704937 ACGCTAGTAGCAAATCTTTTATACCC 59.295 38.462 21.70 0.00 42.58 3.69
451 2159 8.712285 AACACGCTAGTAGCAAATCTTTTATA 57.288 30.769 21.70 0.00 42.58 0.98
453 2161 6.647481 TGAACACGCTAGTAGCAAATCTTTTA 59.353 34.615 21.70 0.68 42.58 1.52
459 2167 3.056107 TCCTGAACACGCTAGTAGCAAAT 60.056 43.478 21.70 3.94 42.58 2.32
462 2170 1.541379 TCCTGAACACGCTAGTAGCA 58.459 50.000 21.70 0.26 42.58 3.49
469 2177 0.463654 TGCAACTTCCTGAACACGCT 60.464 50.000 0.00 0.00 0.00 5.07
470 2178 0.317020 GTGCAACTTCCTGAACACGC 60.317 55.000 0.00 0.00 0.00 5.34
474 2182 0.307760 CACCGTGCAACTTCCTGAAC 59.692 55.000 0.00 0.00 31.75 3.18
476 2184 1.227823 CCACCGTGCAACTTCCTGA 60.228 57.895 0.00 0.00 31.75 3.86
477 2185 1.507141 GACCACCGTGCAACTTCCTG 61.507 60.000 0.00 0.00 31.75 3.86
479 2187 2.604174 CGACCACCGTGCAACTTCC 61.604 63.158 0.00 0.00 31.75 3.46
480 2188 2.935955 CGACCACCGTGCAACTTC 59.064 61.111 0.00 0.00 31.75 3.01
481 2189 3.276846 GCGACCACCGTGCAACTT 61.277 61.111 0.00 0.00 41.15 2.66
485 2239 2.970324 GAAAGCGACCACCGTGCA 60.970 61.111 0.00 0.00 41.15 4.57
490 2244 2.973694 TATGTAGGAAAGCGACCACC 57.026 50.000 0.00 0.00 0.00 4.61
512 2266 2.279851 CGTGAGTGACACCGGCAA 60.280 61.111 0.00 0.00 45.73 4.52
577 2336 1.674057 CCAGTGGACTGACTGACCC 59.326 63.158 1.68 0.00 45.39 4.46
607 2366 2.738521 CTTGTCCCAGCGTCCGTG 60.739 66.667 0.00 0.00 0.00 4.94
608 2367 2.915659 TCTTGTCCCAGCGTCCGT 60.916 61.111 0.00 0.00 0.00 4.69
616 2375 3.485463 AATTCACGTTCTCTTGTCCCA 57.515 42.857 0.00 0.00 0.00 4.37
650 2409 4.794439 TCGCTGATCCGCACACCG 62.794 66.667 9.90 0.00 0.00 4.94
677 2584 2.695055 CATGCGTACGGACAAGCG 59.305 61.111 18.39 0.00 0.00 4.68
678 2585 2.461110 CCCATGCGTACGGACAAGC 61.461 63.158 18.39 0.00 0.00 4.01
679 2586 0.179084 ATCCCATGCGTACGGACAAG 60.179 55.000 18.39 8.01 0.00 3.16
696 2603 1.056103 CGCTGTGATCCGATTCGATC 58.944 55.000 7.83 9.17 39.35 3.69
697 2604 0.668535 TCGCTGTGATCCGATTCGAT 59.331 50.000 7.83 0.00 0.00 3.59
700 2607 0.579156 GCTTCGCTGTGATCCGATTC 59.421 55.000 0.00 0.00 33.04 2.52
701 2608 1.148157 CGCTTCGCTGTGATCCGATT 61.148 55.000 5.45 0.00 33.04 3.34
702 2609 1.589993 CGCTTCGCTGTGATCCGAT 60.590 57.895 5.45 0.00 33.04 4.18
736 2643 1.463553 GGCACCCCTTTTCCACTGTG 61.464 60.000 0.00 0.00 0.00 3.66
742 2649 3.680786 GCACGGCACCCCTTTTCC 61.681 66.667 0.00 0.00 0.00 3.13
908 2856 0.036875 GAGGGAGAGGTGTTGTTGGG 59.963 60.000 0.00 0.00 0.00 4.12
913 2861 1.831652 AAGCGGAGGGAGAGGTGTTG 61.832 60.000 0.00 0.00 0.00 3.33
929 2898 2.124778 GGAGAGGGCAGAGCAAGC 60.125 66.667 0.00 0.00 0.00 4.01
953 2922 4.593864 GTCGCCGGAGATGGAGGC 62.594 72.222 12.23 0.00 46.88 4.70
954 2923 3.917760 GGTCGCCGGAGATGGAGG 61.918 72.222 12.23 0.00 0.00 4.30
967 2936 1.218316 CTTCTTCTTCCCCCGGTCG 59.782 63.158 0.00 0.00 0.00 4.79
968 2937 0.981943 TTCTTCTTCTTCCCCCGGTC 59.018 55.000 0.00 0.00 0.00 4.79
969 2938 0.984995 CTTCTTCTTCTTCCCCCGGT 59.015 55.000 0.00 0.00 0.00 5.28
992 2961 2.021068 GAGCGGAGACATGGCTGCTA 62.021 60.000 18.85 0.00 46.13 3.49
993 2962 3.397439 AGCGGAGACATGGCTGCT 61.397 61.111 18.85 13.14 41.68 4.24
1014 2990 1.599606 GGTCGAGGCTGAGAAGCTCA 61.600 60.000 0.00 0.00 38.25 4.26
1017 2993 1.153667 CAGGTCGAGGCTGAGAAGC 60.154 63.158 0.00 0.00 0.00 3.86
1126 3112 3.703001 CTGCCTAACTTGGAAGGAAGA 57.297 47.619 0.00 0.00 40.63 2.87
1140 3219 2.603075 AAAAATCTGTGGCCTGCCTA 57.397 45.000 9.97 0.00 36.94 3.93
1161 3242 0.631212 ATGGGATTTGTGGGGAGGAC 59.369 55.000 0.00 0.00 0.00 3.85
1200 3288 8.626526 TCAAATTTGAGAAACCCACTAGTAAAC 58.373 33.333 16.91 0.00 32.50 2.01
1231 3393 4.132336 ACAAGACGAGAAGGGTTTTTACC 58.868 43.478 0.00 0.00 0.00 2.85
1247 3409 8.233190 CAGATCATCAAGGAGTAAAAACAAGAC 58.767 37.037 0.00 0.00 0.00 3.01
1249 3411 8.103948 ACAGATCATCAAGGAGTAAAAACAAG 57.896 34.615 0.00 0.00 0.00 3.16
1252 3419 6.803807 GCAACAGATCATCAAGGAGTAAAAAC 59.196 38.462 0.00 0.00 0.00 2.43
1255 3422 4.943705 GGCAACAGATCATCAAGGAGTAAA 59.056 41.667 0.00 0.00 0.00 2.01
1256 3423 4.019411 TGGCAACAGATCATCAAGGAGTAA 60.019 41.667 0.00 0.00 46.17 2.24
1257 3424 3.519107 TGGCAACAGATCATCAAGGAGTA 59.481 43.478 0.00 0.00 46.17 2.59
1258 3425 2.306805 TGGCAACAGATCATCAAGGAGT 59.693 45.455 0.00 0.00 46.17 3.85
1305 3482 3.603158 TGCATAGAGCCAAACGTCTAA 57.397 42.857 0.00 0.00 44.83 2.10
1345 3522 0.035317 TATCATGATGAGCGGCACCC 59.965 55.000 18.72 0.00 0.00 4.61
1490 3705 9.490083 AAGGTGTAAATAGAAGTAGACCAGTAT 57.510 33.333 0.00 0.00 36.38 2.12
1495 3710 5.816258 GGCAAGGTGTAAATAGAAGTAGACC 59.184 44.000 0.00 0.00 34.60 3.85
1496 3711 6.641474 AGGCAAGGTGTAAATAGAAGTAGAC 58.359 40.000 0.00 0.00 0.00 2.59
1497 3712 6.869206 AGGCAAGGTGTAAATAGAAGTAGA 57.131 37.500 0.00 0.00 0.00 2.59
1505 3720 3.449746 AGGCAAGGCAAGGTGTAAATA 57.550 42.857 0.00 0.00 0.00 1.40
1508 3723 2.961531 TTAGGCAAGGCAAGGTGTAA 57.038 45.000 0.00 0.00 0.00 2.41
1513 3728 1.753073 CCTGAATTAGGCAAGGCAAGG 59.247 52.381 0.00 0.00 40.38 3.61
1514 3729 1.753073 CCCTGAATTAGGCAAGGCAAG 59.247 52.381 0.00 0.00 45.89 4.01
1515 3730 1.077005 ACCCTGAATTAGGCAAGGCAA 59.923 47.619 0.00 0.00 45.89 4.52
1516 3731 0.704076 ACCCTGAATTAGGCAAGGCA 59.296 50.000 0.00 0.00 45.89 4.75
1517 3732 1.393603 GACCCTGAATTAGGCAAGGC 58.606 55.000 0.00 0.00 45.89 4.35
1545 3760 2.808315 CTCCTGACGTCCATCCCG 59.192 66.667 14.12 0.00 0.00 5.14
1715 3942 3.075005 CTGGGGTCATCGACGGGT 61.075 66.667 0.00 0.00 32.65 5.28
1721 3948 1.372087 GAAGCTTGCTGGGGTCATCG 61.372 60.000 2.10 0.00 0.00 3.84
1839 4066 4.712425 GCACGCAAGCCAAGGCAG 62.712 66.667 14.40 6.53 44.88 4.85
1871 4101 6.618811 AGAAGCAACACATGAAATTCAGATC 58.381 36.000 0.00 0.00 0.00 2.75
1908 4138 2.597903 GGGTCCCTGAAGATGGCC 59.402 66.667 0.00 0.00 0.00 5.36
1926 4156 2.358322 TGTTGTTCCCCTTCCTGAAC 57.642 50.000 0.00 0.00 40.94 3.18
1979 4213 5.481105 ACGATACGAAACCCATGAGTAAAA 58.519 37.500 0.00 0.00 0.00 1.52
1983 4217 3.259064 CAACGATACGAAACCCATGAGT 58.741 45.455 0.00 0.00 0.00 3.41
1984 4218 3.259064 ACAACGATACGAAACCCATGAG 58.741 45.455 0.00 0.00 0.00 2.90
1990 4224 7.840981 ATAAACAAAACAACGATACGAAACC 57.159 32.000 0.00 0.00 0.00 3.27
1991 4225 9.544825 CAAATAAACAAAACAACGATACGAAAC 57.455 29.630 0.00 0.00 0.00 2.78
1993 4227 8.734933 CACAAATAAACAAAACAACGATACGAA 58.265 29.630 0.00 0.00 0.00 3.85
1994 4228 7.909121 ACACAAATAAACAAAACAACGATACGA 59.091 29.630 0.00 0.00 0.00 3.43
1996 4230 9.011407 TCACACAAATAAACAAAACAACGATAC 57.989 29.630 0.00 0.00 0.00 2.24
1997 4231 9.569167 TTCACACAAATAAACAAAACAACGATA 57.431 25.926 0.00 0.00 0.00 2.92
2000 4234 8.376203 TCATTCACACAAATAAACAAAACAACG 58.624 29.630 0.00 0.00 0.00 4.10
2061 4350 7.990541 AACGAGGTTAAAAACAATTTACCAC 57.009 32.000 0.00 0.00 31.99 4.16
2063 4352 9.184062 CCTAAACGAGGTTAAAAACAATTTACC 57.816 33.333 0.00 0.00 40.98 2.85
2151 4443 1.367840 GTGGCCGAATATCCTCGCT 59.632 57.895 0.00 0.00 37.51 4.93
2169 4461 3.920231 TCTTCATCCTTGACATCAGGG 57.080 47.619 3.66 3.66 43.72 4.45
2183 4475 5.190528 ACTGATACTGACCATGGTTCTTCAT 59.809 40.000 20.85 9.11 0.00 2.57
2327 4625 4.195225 CTTCTGAAGAAGGGTGTACTCC 57.805 50.000 12.01 5.35 45.79 3.85
2420 4718 6.051717 ACTTAATAAGAGTGCTGCAGTATGG 58.948 40.000 16.64 0.00 35.86 2.74
2425 4723 7.201565 GGTTAAGACTTAATAAGAGTGCTGCAG 60.202 40.741 10.11 10.11 0.00 4.41
2449 4753 1.209747 GTTTAGGGGAGCGATCTTGGT 59.790 52.381 0.00 0.00 0.00 3.67
2463 4767 3.826729 CCAAGTTTCCTCCCTTGTTTAGG 59.173 47.826 0.00 0.00 44.33 2.69
2468 4772 0.853530 AGCCAAGTTTCCTCCCTTGT 59.146 50.000 0.00 0.00 37.05 3.16
2469 4773 1.251251 CAGCCAAGTTTCCTCCCTTG 58.749 55.000 0.00 0.00 38.21 3.61
2597 4901 2.354704 CCGTAAGATTTCTCTGCACCCA 60.355 50.000 0.00 0.00 43.02 4.51
2604 4908 0.527817 CGCGCCCGTAAGATTTCTCT 60.528 55.000 0.00 0.00 43.02 3.10
2723 5027 2.952310 GGGCATCCAAGTGAAGGTATTC 59.048 50.000 0.00 0.00 35.87 1.75
2733 5037 2.217776 AGGAATAAGGGGCATCCAAGT 58.782 47.619 0.00 0.00 38.24 3.16
2735 5039 3.986817 TGATAGGAATAAGGGGCATCCAA 59.013 43.478 0.00 0.00 38.24 3.53
2737 5041 4.657814 TTGATAGGAATAAGGGGCATCC 57.342 45.455 0.00 0.00 0.00 3.51
2738 5042 7.015584 ACAATTTTGATAGGAATAAGGGGCATC 59.984 37.037 0.00 0.00 0.00 3.91
2739 5043 6.845975 ACAATTTTGATAGGAATAAGGGGCAT 59.154 34.615 0.00 0.00 0.00 4.40
2740 5044 6.201591 ACAATTTTGATAGGAATAAGGGGCA 58.798 36.000 0.00 0.00 0.00 5.36
2741 5045 6.731292 ACAATTTTGATAGGAATAAGGGGC 57.269 37.500 0.00 0.00 0.00 5.80
2742 5046 8.305046 TGAACAATTTTGATAGGAATAAGGGG 57.695 34.615 0.00 0.00 0.00 4.79
2743 5047 9.754382 CATGAACAATTTTGATAGGAATAAGGG 57.246 33.333 0.00 0.00 0.00 3.95
2744 5048 9.754382 CCATGAACAATTTTGATAGGAATAAGG 57.246 33.333 0.00 0.00 0.00 2.69
2747 5051 9.699410 AGTCCATGAACAATTTTGATAGGAATA 57.301 29.630 0.00 0.00 0.00 1.75
2748 5052 8.472413 CAGTCCATGAACAATTTTGATAGGAAT 58.528 33.333 0.00 0.00 0.00 3.01
2771 5075 4.103153 TGGTTGGTTCAGAGAGAAATCAGT 59.897 41.667 0.00 0.00 38.13 3.41
2781 5085 0.764890 TCCCACTGGTTGGTTCAGAG 59.235 55.000 0.00 0.00 45.25 3.35
2787 5091 0.991355 TGGAACTCCCACTGGTTGGT 60.991 55.000 0.00 0.00 45.25 3.67
2788 5092 0.184933 TTGGAACTCCCACTGGTTGG 59.815 55.000 0.00 0.00 46.62 3.77
2789 5093 1.133792 ACTTGGAACTCCCACTGGTTG 60.134 52.381 0.00 0.00 46.62 3.77
2790 5094 1.222567 ACTTGGAACTCCCACTGGTT 58.777 50.000 0.00 0.00 46.62 3.67
2878 5182 6.360370 TTTCACTAGATGAGGCAGTAGTTT 57.640 37.500 0.00 0.00 38.99 2.66
2881 5185 6.154203 TCATTTCACTAGATGAGGCAGTAG 57.846 41.667 0.00 0.00 38.99 2.57
2882 5186 6.544928 TTCATTTCACTAGATGAGGCAGTA 57.455 37.500 0.00 0.00 38.99 2.74
2934 5243 6.702329 TCTGTTGGGTTACACAAAACAAAAT 58.298 32.000 0.01 0.00 30.90 1.82
2940 5250 4.237976 TCCTCTGTTGGGTTACACAAAA 57.762 40.909 0.01 0.00 0.00 2.44
3020 5330 5.529060 GGCACAAGAAGAAGAAGAAGAAGAA 59.471 40.000 0.00 0.00 0.00 2.52
3021 5331 5.059833 GGCACAAGAAGAAGAAGAAGAAGA 58.940 41.667 0.00 0.00 0.00 2.87
3022 5332 4.818546 TGGCACAAGAAGAAGAAGAAGAAG 59.181 41.667 0.00 0.00 31.92 2.85
3048 5359 0.176680 ACGGCAGATCGAGCTGAAAT 59.823 50.000 33.37 14.42 40.83 2.17
3050 5361 0.037326 AAACGGCAGATCGAGCTGAA 60.037 50.000 33.37 0.00 40.83 3.02
3054 5365 0.737715 AGTGAAACGGCAGATCGAGC 60.738 55.000 0.00 0.00 45.86 5.03
3057 5368 2.081526 CCAGTGAAACGGCAGATCG 58.918 57.895 0.00 0.00 45.86 3.69
3084 5396 9.744468 TCACACACATATACACAGTTACATATC 57.256 33.333 0.00 0.00 0.00 1.63
3095 5407 5.126545 TCCCTACAGTCACACACATATACAC 59.873 44.000 0.00 0.00 0.00 2.90
3163 5475 1.134159 CATCCCTTGGCTTCCTCTCTG 60.134 57.143 0.00 0.00 0.00 3.35
3170 5482 1.316651 GAGATGCATCCCTTGGCTTC 58.683 55.000 23.06 7.76 35.21 3.86
3188 5500 1.813178 CACAAGACTAGAGCAGACGGA 59.187 52.381 0.00 0.00 0.00 4.69
3210 5527 3.504906 GCAGGATCATGTCATAACCCATG 59.495 47.826 9.42 0.00 39.82 3.66
3233 5550 0.376152 GGTGCTGCATTCAGACATCG 59.624 55.000 5.27 0.00 42.95 3.84
3405 5725 1.305930 GGGCTTTCGTGCTTACCCAG 61.306 60.000 0.00 0.00 37.30 4.45
3435 5764 2.029470 GGTGACTCTGTCTGAAGTCTGG 60.029 54.545 8.87 0.00 33.15 3.86
3443 5772 2.420642 CAATGGTGGTGACTCTGTCTG 58.579 52.381 0.00 0.00 33.15 3.51
3444 5773 1.271054 GCAATGGTGGTGACTCTGTCT 60.271 52.381 0.00 0.00 33.15 3.41
3445 5774 1.160137 GCAATGGTGGTGACTCTGTC 58.840 55.000 0.00 0.00 0.00 3.51
3446 5775 0.767375 AGCAATGGTGGTGACTCTGT 59.233 50.000 0.00 0.00 33.11 3.41
3476 5805 0.322456 AATGCAGCCGGAAAGCAGTA 60.322 50.000 18.44 0.00 42.14 2.74
3561 5891 0.698818 AGTACCCCTTGCCTTCCTTG 59.301 55.000 0.00 0.00 0.00 3.61
3576 5906 2.002509 GCCTCCGGTCCTCGAAGTAC 62.003 65.000 0.00 0.00 42.43 2.73
3657 5987 3.682292 ATTGGAGAGGCCGGCGTTC 62.682 63.158 24.48 21.27 40.66 3.95
3680 6010 3.817647 GCCCATCAAAGATGACATCTACC 59.182 47.826 18.24 0.00 39.08 3.18
3702 6032 2.402305 GCACTCACACAGAAGACAGAG 58.598 52.381 0.00 0.00 0.00 3.35
3748 6082 3.578089 AATGCAGTTCACACGCGCG 62.578 57.895 30.96 30.96 0.00 6.86
3750 6084 2.076628 GCAATGCAGTTCACACGCG 61.077 57.895 3.53 3.53 0.00 6.01
3761 6095 1.456296 GGTCTCATCACTGCAATGCA 58.544 50.000 7.99 7.99 36.92 3.96
3762 6096 0.376152 CGGTCTCATCACTGCAATGC 59.624 55.000 0.00 0.00 0.00 3.56
3763 6097 1.012086 CCGGTCTCATCACTGCAATG 58.988 55.000 0.00 0.00 0.00 2.82
3764 6098 0.745845 GCCGGTCTCATCACTGCAAT 60.746 55.000 1.90 0.00 0.00 3.56
3765 6099 1.375908 GCCGGTCTCATCACTGCAA 60.376 57.895 1.90 0.00 0.00 4.08
3780 6124 5.766150 TCATTATTATTCAAACCCTGCCG 57.234 39.130 0.00 0.00 0.00 5.69
3816 6160 3.732212 CATACACCACATCACATCGGAT 58.268 45.455 0.00 0.00 0.00 4.18
3817 6161 2.741553 GCATACACCACATCACATCGGA 60.742 50.000 0.00 0.00 0.00 4.55
3818 6162 1.599071 GCATACACCACATCACATCGG 59.401 52.381 0.00 0.00 0.00 4.18
3819 6163 2.554142 AGCATACACCACATCACATCG 58.446 47.619 0.00 0.00 0.00 3.84
3820 6164 3.691118 ACAAGCATACACCACATCACATC 59.309 43.478 0.00 0.00 0.00 3.06
3821 6165 3.689347 ACAAGCATACACCACATCACAT 58.311 40.909 0.00 0.00 0.00 3.21
3822 6166 3.073678 GACAAGCATACACCACATCACA 58.926 45.455 0.00 0.00 0.00 3.58
3823 6167 2.094258 CGACAAGCATACACCACATCAC 59.906 50.000 0.00 0.00 0.00 3.06
3824 6168 2.289382 ACGACAAGCATACACCACATCA 60.289 45.455 0.00 0.00 0.00 3.07
3825 6169 2.346803 ACGACAAGCATACACCACATC 58.653 47.619 0.00 0.00 0.00 3.06
3826 6170 2.472695 ACGACAAGCATACACCACAT 57.527 45.000 0.00 0.00 0.00 3.21
3827 6171 2.929161 GCTACGACAAGCATACACCACA 60.929 50.000 0.00 0.00 42.30 4.17
3828 6172 1.659098 GCTACGACAAGCATACACCAC 59.341 52.381 0.00 0.00 42.30 4.16
3829 6173 1.548719 AGCTACGACAAGCATACACCA 59.451 47.619 10.78 0.00 45.30 4.17
3830 6174 1.927174 CAGCTACGACAAGCATACACC 59.073 52.381 10.78 0.00 45.30 4.16
3831 6175 1.927174 CCAGCTACGACAAGCATACAC 59.073 52.381 10.78 0.00 45.30 2.90
3832 6176 1.822371 TCCAGCTACGACAAGCATACA 59.178 47.619 10.78 0.00 45.30 2.29
3833 6177 2.579207 TCCAGCTACGACAAGCATAC 57.421 50.000 10.78 0.00 45.30 2.39
3834 6178 2.430694 ACATCCAGCTACGACAAGCATA 59.569 45.455 10.78 0.00 45.30 3.14
3835 6179 1.208052 ACATCCAGCTACGACAAGCAT 59.792 47.619 10.78 0.00 45.30 3.79
3860 6204 2.093658 ACACACAAGTTCAGGACGAGTT 60.094 45.455 0.00 0.00 0.00 3.01
3861 6205 1.480954 ACACACAAGTTCAGGACGAGT 59.519 47.619 0.00 0.00 0.00 4.18
3878 6222 4.158384 CACGAGATATTTGCAAACCACAC 58.842 43.478 15.41 5.80 0.00 3.82
3885 6229 2.352651 GCTCAGCACGAGATATTTGCAA 59.647 45.455 7.31 0.00 45.45 4.08
3892 6236 1.029947 TGGACGCTCAGCACGAGATA 61.030 55.000 7.31 0.00 45.45 1.98
3909 6253 1.152881 GCAAGCCTAGGTCCCATGG 60.153 63.158 11.31 4.14 0.00 3.66
3921 6265 1.289276 CAACAAACAAGTGGCAAGCC 58.711 50.000 3.61 3.61 0.00 4.35
3923 6267 3.181397 CAGACAACAAACAAGTGGCAAG 58.819 45.455 0.00 0.00 0.00 4.01
3927 6273 2.937469 TGCAGACAACAAACAAGTGG 57.063 45.000 0.00 0.00 0.00 4.00
3939 6285 0.804364 GGCAACGATTGATGCAGACA 59.196 50.000 16.25 0.00 44.96 3.41
3983 6365 4.516698 AGCTTTTGTGTCTACAATGGTCTG 59.483 41.667 0.00 0.00 45.56 3.51
3985 6367 4.515191 TGAGCTTTTGTGTCTACAATGGTC 59.485 41.667 13.64 13.64 45.56 4.02
3987 6369 5.437289 TTGAGCTTTTGTGTCTACAATGG 57.563 39.130 0.00 0.00 45.56 3.16
4014 6396 4.439153 CCTTCCCGATGTGACATTGAAATG 60.439 45.833 14.30 1.45 42.10 2.32
4015 6397 3.696051 CCTTCCCGATGTGACATTGAAAT 59.304 43.478 14.30 0.00 0.00 2.17
4030 6412 5.001232 TCTGTCTACAATTTTTCCTTCCCG 58.999 41.667 0.00 0.00 0.00 5.14
4061 6444 2.721425 AACCAAACGAACCCTTGAGA 57.279 45.000 0.00 0.00 0.00 3.27
4062 6445 2.034179 GGAAACCAAACGAACCCTTGAG 59.966 50.000 0.00 0.00 0.00 3.02
4070 6453 5.242171 GGAATTTAGGAGGAAACCAAACGAA 59.758 40.000 0.00 0.00 0.00 3.85
4073 6456 4.082408 CGGGAATTTAGGAGGAAACCAAAC 60.082 45.833 0.00 0.00 0.00 2.93
4082 6465 2.622064 CTCCACGGGAATTTAGGAGG 57.378 55.000 0.00 0.00 41.65 4.30
4093 6476 1.379527 GGAATTTGCTACTCCACGGG 58.620 55.000 0.00 0.00 0.00 5.28
4095 6478 1.722011 ACGGAATTTGCTACTCCACG 58.278 50.000 0.00 0.00 0.00 4.94
4096 6479 2.812011 ACAACGGAATTTGCTACTCCAC 59.188 45.455 0.00 0.00 0.00 4.02
4118 6501 2.111384 CTCTCTGAAATTCCCCGAGGA 58.889 52.381 0.00 0.00 41.88 3.71
4119 6502 2.111384 TCTCTCTGAAATTCCCCGAGG 58.889 52.381 0.00 0.00 0.00 4.63
4120 6503 3.196685 ACTTCTCTCTGAAATTCCCCGAG 59.803 47.826 0.00 0.00 33.79 4.63
4121 6504 3.173965 ACTTCTCTCTGAAATTCCCCGA 58.826 45.455 0.00 0.00 33.79 5.14
4122 6505 3.618690 ACTTCTCTCTGAAATTCCCCG 57.381 47.619 0.00 0.00 33.79 5.73
4123 6506 6.301169 TCTTACTTCTCTCTGAAATTCCCC 57.699 41.667 0.00 0.00 33.79 4.81
4134 6517 5.163499 ACGGAATCACCATCTTACTTCTCTC 60.163 44.000 0.00 0.00 38.90 3.20
4137 6520 5.178797 CAACGGAATCACCATCTTACTTCT 58.821 41.667 0.00 0.00 38.90 2.85
4138 6521 4.935808 ACAACGGAATCACCATCTTACTTC 59.064 41.667 0.00 0.00 38.90 3.01
4160 6543 0.879090 CCTTAGGCACCGTTTGGAAC 59.121 55.000 0.00 0.00 39.21 3.62
4165 6548 4.643334 GGAAATATTCCTTAGGCACCGTTT 59.357 41.667 1.86 0.00 46.57 3.60
4194 7054 9.224267 CATAGGAATTTCTGACGGATATCATTT 57.776 33.333 4.83 0.00 0.00 2.32
4205 7065 7.886338 ACTGGAAAAACATAGGAATTTCTGAC 58.114 34.615 0.00 0.00 33.42 3.51
4224 7084 4.959210 TGAACATCCAAAGGAAAACTGGAA 59.041 37.500 0.00 0.00 42.41 3.53
4228 7088 6.790232 TTCTTGAACATCCAAAGGAAAACT 57.210 33.333 0.00 0.00 34.34 2.66
4251 7111 3.195661 GAGGATTCGCGTACCAATCTTT 58.804 45.455 15.27 6.80 30.85 2.52
4267 7127 3.183775 CGTGTTTCTTTTTCGTCGAGGAT 59.816 43.478 8.88 0.00 0.00 3.24
4269 7129 2.283351 ACGTGTTTCTTTTTCGTCGAGG 59.717 45.455 0.00 0.00 0.00 4.63
4273 7133 9.537848 AATATATTGACGTGTTTCTTTTTCGTC 57.462 29.630 0.00 8.68 46.89 4.20
4334 7200 4.268644 CAGTGTATGGCAGTAATCTTGTCG 59.731 45.833 0.00 0.00 0.00 4.35
4343 7209 3.128068 CAGACGTACAGTGTATGGCAGTA 59.872 47.826 26.59 0.00 0.00 2.74
4346 7212 1.890489 ACAGACGTACAGTGTATGGCA 59.110 47.619 26.59 0.00 33.01 4.92
4382 7248 3.046968 TGTTTCGTTGCCTATACTGCA 57.953 42.857 0.00 0.00 36.84 4.41
4383 7249 3.181510 CCTTGTTTCGTTGCCTATACTGC 60.182 47.826 0.00 0.00 0.00 4.40
4384 7250 4.092968 GTCCTTGTTTCGTTGCCTATACTG 59.907 45.833 0.00 0.00 0.00 2.74
4402 7268 0.249398 GTATGTGCCAGACCGTCCTT 59.751 55.000 0.00 0.00 0.00 3.36
4403 7269 0.902984 TGTATGTGCCAGACCGTCCT 60.903 55.000 0.00 0.00 0.00 3.85
4404 7270 0.178068 ATGTATGTGCCAGACCGTCC 59.822 55.000 0.00 0.00 0.00 4.79
4456 7323 0.687757 TGGCCTCCTGTTCGATAGCT 60.688 55.000 3.32 0.00 0.00 3.32
4468 7335 1.072331 TGAAGTTCAGTTCTGGCCTCC 59.928 52.381 3.32 0.00 0.00 4.30
4542 7409 2.125961 GGAGTACACCGGCCGATCT 61.126 63.158 30.73 16.39 0.00 2.75
4562 7429 2.284190 CCCTGAAGCTTTCGAAGATCC 58.716 52.381 0.00 0.00 35.04 3.36
4569 7436 2.680913 CGTGGCCCTGAAGCTTTCG 61.681 63.158 0.00 0.00 0.00 3.46
4574 7441 2.281484 TTGACGTGGCCCTGAAGC 60.281 61.111 0.00 0.00 0.00 3.86
4587 7454 9.396022 TGATTCTATTCTTTTATCCAGGTTGAC 57.604 33.333 0.00 0.00 0.00 3.18
4603 7470 5.404968 CGAGGATGCAGTTCTGATTCTATTC 59.595 44.000 3.84 0.54 0.00 1.75
4604 7471 5.295950 CGAGGATGCAGTTCTGATTCTATT 58.704 41.667 3.84 0.00 0.00 1.73
4606 7473 3.491619 GCGAGGATGCAGTTCTGATTCTA 60.492 47.826 3.84 0.00 34.15 2.10
4607 7474 2.741228 GCGAGGATGCAGTTCTGATTCT 60.741 50.000 3.84 0.00 34.15 2.40
4608 7475 1.596727 GCGAGGATGCAGTTCTGATTC 59.403 52.381 3.84 0.00 34.15 2.52
4609 7476 1.661341 GCGAGGATGCAGTTCTGATT 58.339 50.000 3.84 0.00 34.15 2.57
4610 7477 0.179062 GGCGAGGATGCAGTTCTGAT 60.179 55.000 3.84 0.00 36.28 2.90
4616 7483 0.813184 CATTTTGGCGAGGATGCAGT 59.187 50.000 0.00 0.00 36.28 4.40
4640 7507 4.511527 CTCTCATGCCTGTAACAATCACT 58.488 43.478 0.00 0.00 0.00 3.41
4643 7510 3.209410 CCCTCTCATGCCTGTAACAATC 58.791 50.000 0.00 0.00 0.00 2.67
4647 7514 4.344102 TGTATACCCTCTCATGCCTGTAAC 59.656 45.833 0.00 0.00 0.00 2.50
4648 7515 4.552674 TGTATACCCTCTCATGCCTGTAA 58.447 43.478 0.00 0.00 0.00 2.41
4650 7517 2.968574 CTGTATACCCTCTCATGCCTGT 59.031 50.000 0.00 0.00 0.00 4.00
4651 7518 2.968574 ACTGTATACCCTCTCATGCCTG 59.031 50.000 0.00 0.00 0.00 4.85
4652 7519 3.336509 ACTGTATACCCTCTCATGCCT 57.663 47.619 0.00 0.00 0.00 4.75
4653 7520 3.895656 TGTACTGTATACCCTCTCATGCC 59.104 47.826 0.00 0.00 0.00 4.40
4654 7521 4.021894 CCTGTACTGTATACCCTCTCATGC 60.022 50.000 0.00 0.00 0.00 4.06
4655 7522 4.524714 CCCTGTACTGTATACCCTCTCATG 59.475 50.000 0.00 0.00 0.00 3.07
4656 7523 4.449376 CCCCTGTACTGTATACCCTCTCAT 60.449 50.000 0.00 0.00 0.00 2.90
4657 7524 3.117246 CCCCTGTACTGTATACCCTCTCA 60.117 52.174 0.00 0.00 0.00 3.27
4658 7525 3.139770 TCCCCTGTACTGTATACCCTCTC 59.860 52.174 0.00 0.00 0.00 3.20
4659 7526 3.136896 TCCCCTGTACTGTATACCCTCT 58.863 50.000 0.00 0.00 0.00 3.69
4660 7527 3.117208 ACTCCCCTGTACTGTATACCCTC 60.117 52.174 0.00 0.00 0.00 4.30
4661 7528 2.863879 ACTCCCCTGTACTGTATACCCT 59.136 50.000 0.00 0.00 0.00 4.34
4662 7529 3.325359 ACTCCCCTGTACTGTATACCC 57.675 52.381 0.00 0.00 0.00 3.69
4663 7530 4.667519 CAACTCCCCTGTACTGTATACC 57.332 50.000 0.00 0.00 0.00 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.