Multiple sequence alignment - TraesCS4A01G263600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G263600 chr4A 100.000 2668 0 0 1 2668 575807456 575810123 0.000000e+00 4927.0
1 TraesCS4A01G263600 chr4A 74.909 275 61 5 158 431 701264466 701264733 4.670000e-23 119.0
2 TraesCS4A01G263600 chr4B 88.904 2208 121 43 438 2568 39734948 39737108 0.000000e+00 2606.0
3 TraesCS4A01G263600 chr4D 86.294 1379 66 36 442 1758 27114333 27115650 0.000000e+00 1386.0
4 TraesCS4A01G263600 chr4D 90.533 919 74 13 1756 2668 27119720 27120631 0.000000e+00 1203.0
5 TraesCS4A01G263600 chr5D 92.647 272 19 1 161 432 35960267 35959997 8.960000e-105 390.0
6 TraesCS4A01G263600 chr5D 93.103 145 10 0 1 145 35960398 35960254 2.080000e-51 213.0
7 TraesCS4A01G263600 chr5D 77.899 276 45 14 158 428 41838430 41838166 9.890000e-35 158.0
8 TraesCS4A01G263600 chr7B 88.043 276 30 3 158 431 66823041 66822767 9.210000e-85 324.0
9 TraesCS4A01G263600 chr1B 92.414 145 11 0 1 145 492365821 492365965 9.680000e-50 207.0
10 TraesCS4A01G263600 chr1B 79.061 277 46 11 158 430 592215511 592215243 2.110000e-41 180.0
11 TraesCS4A01G263600 chr6B 91.034 145 13 0 1 145 274980221 274980365 2.100000e-46 196.0
12 TraesCS4A01G263600 chr6B 81.818 132 22 2 15 145 671137659 671137789 2.810000e-20 110.0
13 TraesCS4A01G263600 chr3D 90.441 136 12 1 11 145 454006688 454006553 7.590000e-41 178.0
14 TraesCS4A01G263600 chr7D 78.700 277 46 11 158 430 29300728 29300461 3.530000e-39 172.0
15 TraesCS4A01G263600 chr3B 78.545 275 49 9 158 430 751923370 751923104 3.530000e-39 172.0
16 TraesCS4A01G263600 chr3B 83.607 122 18 2 15 135 32965618 32965498 2.170000e-21 113.0
17 TraesCS4A01G263600 chr2B 77.617 277 51 9 158 431 411885181 411884913 9.890000e-35 158.0
18 TraesCS4A01G263600 chr2B 76.978 278 49 13 158 430 526376479 526376746 7.700000e-31 145.0
19 TraesCS4A01G263600 chr2B 76.512 281 52 12 158 432 767669344 767669072 9.960000e-30 141.0
20 TraesCS4A01G263600 chr2B 83.636 110 18 0 15 124 463342515 463342624 1.310000e-18 104.0
21 TraesCS4A01G263600 chr2B 77.600 125 25 3 2178 2300 627063481 627063358 3.680000e-09 73.1
22 TraesCS4A01G263600 chr5B 85.088 114 16 1 15 128 687398033 687397921 6.040000e-22 115.0
23 TraesCS4A01G263600 chr5A 82.787 122 19 2 15 135 316442258 316442378 1.010000e-19 108.0
24 TraesCS4A01G263600 chr1D 92.308 52 4 0 2528 2579 341173998 341174049 1.020000e-09 75.0
25 TraesCS4A01G263600 chr1D 100.000 33 0 0 1791 1823 70572006 70572038 7.970000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G263600 chr4A 575807456 575810123 2667 False 4927 4927 100.000 1 2668 1 chr4A.!!$F1 2667
1 TraesCS4A01G263600 chr4B 39734948 39737108 2160 False 2606 2606 88.904 438 2568 1 chr4B.!!$F1 2130
2 TraesCS4A01G263600 chr4D 27114333 27115650 1317 False 1386 1386 86.294 442 1758 1 chr4D.!!$F1 1316
3 TraesCS4A01G263600 chr4D 27119720 27120631 911 False 1203 1203 90.533 1756 2668 1 chr4D.!!$F2 912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
118 119 0.034896 TCTCAAGAACGCCCAAGACC 59.965 55.0 0.00 0.0 0.00 3.85 F
172 173 0.035056 AGGGAAGTGTATGTGCTGGC 60.035 55.0 0.00 0.0 0.00 4.85 F
173 174 0.035056 GGGAAGTGTATGTGCTGGCT 60.035 55.0 0.00 0.0 0.00 4.75 F
782 820 0.037303 CCCTCTGCAGAAAGCCAGAA 59.963 55.0 18.85 0.0 44.83 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1058 1123 0.108186 TGGTGCTCTGGATTGTAGCG 60.108 55.000 0.00 0.0 39.14 4.26 R
1067 1132 0.179171 CGTACGTAGTGGTGCTCTGG 60.179 60.000 7.22 0.0 45.73 3.86 R
1068 1133 0.520404 ACGTACGTAGTGGTGCTCTG 59.480 55.000 21.41 0.0 45.73 3.35 R
2549 2664 1.075450 CCCTAGGAGGCGGGTACTT 60.075 63.158 11.48 0.0 35.65 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.881118 TGCTTTTCAACTCATCCGGC 59.119 50.000 0.00 0.00 0.00 6.13
27 28 1.168714 GCTTTTCAACTCATCCGGCT 58.831 50.000 0.00 0.00 0.00 5.52
28 29 2.290008 TGCTTTTCAACTCATCCGGCTA 60.290 45.455 0.00 0.00 0.00 3.93
29 30 2.747446 GCTTTTCAACTCATCCGGCTAA 59.253 45.455 0.00 0.00 0.00 3.09
30 31 3.378427 GCTTTTCAACTCATCCGGCTAAT 59.622 43.478 0.00 0.00 0.00 1.73
31 32 4.574828 GCTTTTCAACTCATCCGGCTAATA 59.425 41.667 0.00 0.00 0.00 0.98
32 33 5.239525 GCTTTTCAACTCATCCGGCTAATAT 59.760 40.000 0.00 0.00 0.00 1.28
33 34 6.238759 GCTTTTCAACTCATCCGGCTAATATT 60.239 38.462 0.00 0.00 0.00 1.28
34 35 7.041372 GCTTTTCAACTCATCCGGCTAATATTA 60.041 37.037 0.00 0.00 0.00 0.98
35 36 8.918202 TTTTCAACTCATCCGGCTAATATTAT 57.082 30.769 0.00 0.00 0.00 1.28
36 37 8.918202 TTTCAACTCATCCGGCTAATATTATT 57.082 30.769 0.00 0.00 0.00 1.40
37 38 8.918202 TTCAACTCATCCGGCTAATATTATTT 57.082 30.769 0.00 0.00 0.00 1.40
58 59 9.801873 TTATTTATAAATGCAACCTCTTCTTGC 57.198 29.630 18.98 0.00 43.69 4.01
62 63 2.334307 GCAACCTCTTCTTGCAGCA 58.666 52.632 0.00 0.00 43.04 4.41
63 64 0.240411 GCAACCTCTTCTTGCAGCAG 59.760 55.000 0.00 0.00 43.04 4.24
64 65 1.602311 CAACCTCTTCTTGCAGCAGT 58.398 50.000 0.00 0.00 0.00 4.40
65 66 1.266175 CAACCTCTTCTTGCAGCAGTG 59.734 52.381 0.00 0.00 0.00 3.66
66 67 0.761187 ACCTCTTCTTGCAGCAGTGA 59.239 50.000 0.00 0.00 0.00 3.41
67 68 1.141657 ACCTCTTCTTGCAGCAGTGAA 59.858 47.619 11.04 11.04 0.00 3.18
68 69 1.805345 CCTCTTCTTGCAGCAGTGAAG 59.195 52.381 23.58 23.58 37.75 3.02
69 70 2.492012 CTCTTCTTGCAGCAGTGAAGT 58.508 47.619 26.11 0.00 37.67 3.01
70 71 2.479656 CTCTTCTTGCAGCAGTGAAGTC 59.520 50.000 26.11 0.00 37.67 3.01
71 72 1.534595 CTTCTTGCAGCAGTGAAGTCC 59.465 52.381 22.26 0.00 33.37 3.85
72 73 0.601046 TCTTGCAGCAGTGAAGTCCG 60.601 55.000 0.00 0.00 0.00 4.79
73 74 0.882042 CTTGCAGCAGTGAAGTCCGT 60.882 55.000 0.00 0.00 0.00 4.69
74 75 0.463654 TTGCAGCAGTGAAGTCCGTT 60.464 50.000 0.00 0.00 0.00 4.44
75 76 1.159713 TGCAGCAGTGAAGTCCGTTG 61.160 55.000 0.00 0.00 0.00 4.10
76 77 1.845809 GCAGCAGTGAAGTCCGTTGG 61.846 60.000 0.00 0.00 0.00 3.77
77 78 1.071471 AGCAGTGAAGTCCGTTGGG 59.929 57.895 0.00 0.00 0.00 4.12
78 79 1.966451 GCAGTGAAGTCCGTTGGGG 60.966 63.158 0.00 0.00 37.02 4.96
79 80 1.752198 CAGTGAAGTCCGTTGGGGA 59.248 57.895 0.00 0.00 44.68 4.81
86 87 2.604079 TCCGTTGGGGAGGCGTAA 60.604 61.111 0.00 0.00 40.94 3.18
87 88 2.125269 CCGTTGGGGAGGCGTAAG 60.125 66.667 0.00 0.00 38.47 2.34
88 89 2.125269 CGTTGGGGAGGCGTAAGG 60.125 66.667 0.00 0.00 38.28 2.69
89 90 2.652095 CGTTGGGGAGGCGTAAGGA 61.652 63.158 0.00 0.00 38.28 3.36
90 91 1.912971 GTTGGGGAGGCGTAAGGAT 59.087 57.895 0.00 0.00 38.28 3.24
91 92 0.463833 GTTGGGGAGGCGTAAGGATG 60.464 60.000 0.00 0.00 38.28 3.51
92 93 2.111251 GGGGAGGCGTAAGGATGC 59.889 66.667 0.00 0.00 36.81 3.91
93 94 2.444256 GGGGAGGCGTAAGGATGCT 61.444 63.158 0.00 0.00 37.75 3.79
94 95 1.227674 GGGAGGCGTAAGGATGCTG 60.228 63.158 0.00 0.00 37.75 4.41
95 96 1.686325 GGGAGGCGTAAGGATGCTGA 61.686 60.000 0.00 0.00 37.75 4.26
96 97 0.249657 GGAGGCGTAAGGATGCTGAG 60.250 60.000 0.00 0.00 37.75 3.35
97 98 0.747255 GAGGCGTAAGGATGCTGAGA 59.253 55.000 0.00 0.00 37.75 3.27
98 99 1.342819 GAGGCGTAAGGATGCTGAGAT 59.657 52.381 0.00 0.00 37.75 2.75
99 100 1.765314 AGGCGTAAGGATGCTGAGATT 59.235 47.619 0.00 0.00 37.75 2.40
100 101 2.139118 GGCGTAAGGATGCTGAGATTC 58.861 52.381 0.00 0.00 37.75 2.52
101 102 2.224161 GGCGTAAGGATGCTGAGATTCT 60.224 50.000 0.00 0.00 37.75 2.40
102 103 3.056304 GCGTAAGGATGCTGAGATTCTC 58.944 50.000 6.73 6.73 34.50 2.87
103 104 3.491619 GCGTAAGGATGCTGAGATTCTCA 60.492 47.826 15.39 15.39 37.03 3.27
104 105 4.686972 CGTAAGGATGCTGAGATTCTCAA 58.313 43.478 16.79 4.31 40.18 3.02
105 106 4.744137 CGTAAGGATGCTGAGATTCTCAAG 59.256 45.833 16.79 11.85 40.18 3.02
106 107 5.451103 CGTAAGGATGCTGAGATTCTCAAGA 60.451 44.000 16.79 7.20 40.18 3.02
107 108 5.432680 AAGGATGCTGAGATTCTCAAGAA 57.567 39.130 16.79 6.97 40.18 2.52
108 109 4.768583 AGGATGCTGAGATTCTCAAGAAC 58.231 43.478 16.79 9.17 40.18 3.01
109 110 3.555139 GGATGCTGAGATTCTCAAGAACG 59.445 47.826 16.79 6.66 40.18 3.95
110 111 2.341257 TGCTGAGATTCTCAAGAACGC 58.659 47.619 16.79 15.58 40.18 4.84
111 112 1.663135 GCTGAGATTCTCAAGAACGCC 59.337 52.381 16.79 0.00 40.18 5.68
112 113 2.275318 CTGAGATTCTCAAGAACGCCC 58.725 52.381 16.79 0.00 40.18 6.13
113 114 1.623311 TGAGATTCTCAAGAACGCCCA 59.377 47.619 13.96 0.00 37.57 5.36
114 115 2.038426 TGAGATTCTCAAGAACGCCCAA 59.962 45.455 13.96 0.00 37.57 4.12
115 116 2.675348 GAGATTCTCAAGAACGCCCAAG 59.325 50.000 8.84 0.00 36.80 3.61
116 117 2.303022 AGATTCTCAAGAACGCCCAAGA 59.697 45.455 0.00 0.00 36.80 3.02
117 118 1.878953 TTCTCAAGAACGCCCAAGAC 58.121 50.000 0.00 0.00 0.00 3.01
118 119 0.034896 TCTCAAGAACGCCCAAGACC 59.965 55.000 0.00 0.00 0.00 3.85
119 120 1.291877 CTCAAGAACGCCCAAGACCG 61.292 60.000 0.00 0.00 0.00 4.79
120 121 1.301401 CAAGAACGCCCAAGACCGA 60.301 57.895 0.00 0.00 0.00 4.69
121 122 1.301479 AAGAACGCCCAAGACCGAC 60.301 57.895 0.00 0.00 0.00 4.79
122 123 1.755393 AAGAACGCCCAAGACCGACT 61.755 55.000 0.00 0.00 0.00 4.18
123 124 2.027625 GAACGCCCAAGACCGACTG 61.028 63.158 0.00 0.00 0.00 3.51
124 125 2.430382 GAACGCCCAAGACCGACTGA 62.430 60.000 0.00 0.00 0.00 3.41
125 126 1.827399 AACGCCCAAGACCGACTGAT 61.827 55.000 0.00 0.00 0.00 2.90
126 127 1.811266 CGCCCAAGACCGACTGATG 60.811 63.158 0.00 0.00 0.00 3.07
127 128 2.109126 GCCCAAGACCGACTGATGC 61.109 63.158 0.00 0.00 0.00 3.91
128 129 1.296392 CCCAAGACCGACTGATGCA 59.704 57.895 0.00 0.00 0.00 3.96
129 130 0.321564 CCCAAGACCGACTGATGCAA 60.322 55.000 0.00 0.00 0.00 4.08
130 131 1.081892 CCAAGACCGACTGATGCAAG 58.918 55.000 0.00 0.00 0.00 4.01
131 132 1.609061 CCAAGACCGACTGATGCAAGT 60.609 52.381 0.00 0.00 0.00 3.16
132 133 1.462283 CAAGACCGACTGATGCAAGTG 59.538 52.381 0.00 0.00 0.00 3.16
133 134 0.681733 AGACCGACTGATGCAAGTGT 59.318 50.000 0.00 0.00 0.00 3.55
134 135 1.893137 AGACCGACTGATGCAAGTGTA 59.107 47.619 0.00 0.00 0.00 2.90
135 136 2.497675 AGACCGACTGATGCAAGTGTAT 59.502 45.455 0.00 0.00 0.00 2.29
136 137 2.604914 GACCGACTGATGCAAGTGTATG 59.395 50.000 0.00 0.00 0.00 2.39
137 138 2.028112 ACCGACTGATGCAAGTGTATGT 60.028 45.455 0.00 0.00 0.00 2.29
138 139 2.349580 CCGACTGATGCAAGTGTATGTG 59.650 50.000 0.00 0.00 0.00 3.21
139 140 2.222886 CGACTGATGCAAGTGTATGTGC 60.223 50.000 0.00 0.00 41.29 4.57
140 141 3.005554 GACTGATGCAAGTGTATGTGCT 58.994 45.455 0.00 0.00 41.48 4.40
141 142 2.745821 ACTGATGCAAGTGTATGTGCTG 59.254 45.455 0.00 0.00 41.48 4.41
142 143 2.086094 TGATGCAAGTGTATGTGCTGG 58.914 47.619 0.00 0.00 41.48 4.85
143 144 0.813184 ATGCAAGTGTATGTGCTGGC 59.187 50.000 0.00 0.00 41.48 4.85
144 145 0.250858 TGCAAGTGTATGTGCTGGCT 60.251 50.000 0.00 0.00 41.48 4.75
145 146 0.883833 GCAAGTGTATGTGCTGGCTT 59.116 50.000 0.00 0.00 37.78 4.35
146 147 1.270550 GCAAGTGTATGTGCTGGCTTT 59.729 47.619 0.00 0.00 37.78 3.51
147 148 2.288395 GCAAGTGTATGTGCTGGCTTTT 60.288 45.455 0.00 0.00 37.78 2.27
148 149 3.568538 CAAGTGTATGTGCTGGCTTTTC 58.431 45.455 0.00 0.00 0.00 2.29
149 150 1.806542 AGTGTATGTGCTGGCTTTTCG 59.193 47.619 0.00 0.00 0.00 3.46
150 151 1.804151 GTGTATGTGCTGGCTTTTCGA 59.196 47.619 0.00 0.00 0.00 3.71
151 152 2.225491 GTGTATGTGCTGGCTTTTCGAA 59.775 45.455 0.00 0.00 0.00 3.71
152 153 2.881513 TGTATGTGCTGGCTTTTCGAAA 59.118 40.909 6.47 6.47 0.00 3.46
153 154 3.316588 TGTATGTGCTGGCTTTTCGAAAA 59.683 39.130 21.35 21.35 0.00 2.29
154 155 2.490328 TGTGCTGGCTTTTCGAAAAG 57.510 45.000 35.51 35.51 46.25 2.27
155 156 1.066908 TGTGCTGGCTTTTCGAAAAGG 59.933 47.619 38.06 27.28 44.24 3.11
156 157 0.673437 TGCTGGCTTTTCGAAAAGGG 59.327 50.000 38.06 23.41 44.24 3.95
157 158 0.958822 GCTGGCTTTTCGAAAAGGGA 59.041 50.000 38.06 14.78 44.24 4.20
158 159 1.339929 GCTGGCTTTTCGAAAAGGGAA 59.660 47.619 38.06 14.44 44.24 3.97
159 160 2.608016 GCTGGCTTTTCGAAAAGGGAAG 60.608 50.000 38.06 22.50 44.24 3.46
160 161 2.623416 CTGGCTTTTCGAAAAGGGAAGT 59.377 45.455 38.06 0.00 44.24 3.01
161 162 2.360801 TGGCTTTTCGAAAAGGGAAGTG 59.639 45.455 38.06 21.02 44.24 3.16
162 163 2.361119 GGCTTTTCGAAAAGGGAAGTGT 59.639 45.455 38.06 0.00 44.24 3.55
163 164 3.566742 GGCTTTTCGAAAAGGGAAGTGTA 59.433 43.478 38.06 11.17 44.24 2.90
164 165 4.217767 GGCTTTTCGAAAAGGGAAGTGTAT 59.782 41.667 38.06 0.00 44.24 2.29
165 166 5.154222 GCTTTTCGAAAAGGGAAGTGTATG 58.846 41.667 38.06 18.82 44.24 2.39
166 167 5.278315 GCTTTTCGAAAAGGGAAGTGTATGT 60.278 40.000 38.06 0.00 44.24 2.29
167 168 5.682943 TTTCGAAAAGGGAAGTGTATGTG 57.317 39.130 8.44 0.00 0.00 3.21
168 169 3.071479 TCGAAAAGGGAAGTGTATGTGC 58.929 45.455 0.00 0.00 0.00 4.57
169 170 3.074412 CGAAAAGGGAAGTGTATGTGCT 58.926 45.455 0.00 0.00 0.00 4.40
170 171 3.120199 CGAAAAGGGAAGTGTATGTGCTG 60.120 47.826 0.00 0.00 0.00 4.41
171 172 2.496899 AAGGGAAGTGTATGTGCTGG 57.503 50.000 0.00 0.00 0.00 4.85
172 173 0.035056 AGGGAAGTGTATGTGCTGGC 60.035 55.000 0.00 0.00 0.00 4.85
173 174 0.035056 GGGAAGTGTATGTGCTGGCT 60.035 55.000 0.00 0.00 0.00 4.75
174 175 1.209504 GGGAAGTGTATGTGCTGGCTA 59.790 52.381 0.00 0.00 0.00 3.93
175 176 2.555199 GGAAGTGTATGTGCTGGCTAG 58.445 52.381 0.00 0.00 0.00 3.42
176 177 2.555199 GAAGTGTATGTGCTGGCTAGG 58.445 52.381 0.00 0.00 0.00 3.02
177 178 0.833287 AGTGTATGTGCTGGCTAGGG 59.167 55.000 0.00 0.00 0.00 3.53
178 179 0.830648 GTGTATGTGCTGGCTAGGGA 59.169 55.000 0.00 0.00 0.00 4.20
179 180 1.123077 TGTATGTGCTGGCTAGGGAG 58.877 55.000 0.00 0.00 0.00 4.30
188 189 2.816012 GCTAGGGAGCCTTCGACC 59.184 66.667 0.00 0.00 43.49 4.79
189 190 2.058595 GCTAGGGAGCCTTCGACCA 61.059 63.158 0.00 0.00 43.49 4.02
190 191 1.817209 CTAGGGAGCCTTCGACCAC 59.183 63.158 0.00 0.00 34.61 4.16
191 192 1.677637 CTAGGGAGCCTTCGACCACC 61.678 65.000 0.00 0.00 34.61 4.61
192 193 2.449967 TAGGGAGCCTTCGACCACCA 62.450 60.000 0.00 0.00 34.61 4.17
193 194 2.047179 GGAGCCTTCGACCACCAC 60.047 66.667 0.00 0.00 0.00 4.16
194 195 2.047179 GAGCCTTCGACCACCACC 60.047 66.667 0.00 0.00 0.00 4.61
195 196 3.934391 GAGCCTTCGACCACCACCG 62.934 68.421 0.00 0.00 0.00 4.94
196 197 3.998672 GCCTTCGACCACCACCGA 61.999 66.667 0.00 0.00 0.00 4.69
197 198 2.048503 CCTTCGACCACCACCGAC 60.049 66.667 0.00 0.00 34.26 4.79
198 199 2.430244 CTTCGACCACCACCGACG 60.430 66.667 0.00 0.00 34.26 5.12
199 200 2.906388 TTCGACCACCACCGACGA 60.906 61.111 0.00 0.00 34.26 4.20
200 201 2.797866 CTTCGACCACCACCGACGAG 62.798 65.000 0.00 0.00 34.26 4.18
210 211 2.995574 CCGACGAGGTGGTCCCTT 60.996 66.667 0.00 0.00 46.51 3.95
211 212 2.580601 CCGACGAGGTGGTCCCTTT 61.581 63.158 0.00 0.00 46.51 3.11
212 213 1.370064 CGACGAGGTGGTCCCTTTT 59.630 57.895 0.00 0.00 46.51 2.27
213 214 0.949105 CGACGAGGTGGTCCCTTTTG 60.949 60.000 0.00 0.00 46.51 2.44
214 215 1.228154 ACGAGGTGGTCCCTTTTGC 60.228 57.895 0.00 0.00 46.51 3.68
215 216 2.325082 CGAGGTGGTCCCTTTTGCG 61.325 63.158 0.00 0.00 46.51 4.85
216 217 1.971695 GAGGTGGTCCCTTTTGCGG 60.972 63.158 0.00 0.00 46.51 5.69
217 218 3.680786 GGTGGTCCCTTTTGCGGC 61.681 66.667 0.00 0.00 0.00 6.53
218 219 2.597510 GTGGTCCCTTTTGCGGCT 60.598 61.111 0.00 0.00 0.00 5.52
219 220 2.197324 TGGTCCCTTTTGCGGCTT 59.803 55.556 0.00 0.00 0.00 4.35
220 221 2.199652 TGGTCCCTTTTGCGGCTTG 61.200 57.895 0.00 0.00 0.00 4.01
221 222 1.901464 GGTCCCTTTTGCGGCTTGA 60.901 57.895 0.00 0.00 0.00 3.02
222 223 1.581447 GTCCCTTTTGCGGCTTGAG 59.419 57.895 0.00 0.00 0.00 3.02
223 224 1.603455 TCCCTTTTGCGGCTTGAGG 60.603 57.895 0.00 5.39 0.00 3.86
224 225 1.603455 CCCTTTTGCGGCTTGAGGA 60.603 57.895 14.67 0.00 0.00 3.71
225 226 1.589716 CCCTTTTGCGGCTTGAGGAG 61.590 60.000 14.67 4.75 0.00 3.69
234 235 2.866028 CTTGAGGAGCTTGCGTGC 59.134 61.111 0.00 0.00 0.00 5.34
236 237 1.227943 TTGAGGAGCTTGCGTGCTT 60.228 52.632 4.76 0.00 44.17 3.91
237 238 0.819259 TTGAGGAGCTTGCGTGCTTT 60.819 50.000 4.76 0.00 44.17 3.51
238 239 1.208614 GAGGAGCTTGCGTGCTTTG 59.791 57.895 4.76 0.00 44.17 2.77
239 240 1.510480 GAGGAGCTTGCGTGCTTTGT 61.510 55.000 4.76 0.00 44.17 2.83
240 241 0.250295 AGGAGCTTGCGTGCTTTGTA 60.250 50.000 4.76 0.00 44.17 2.41
241 242 0.110192 GGAGCTTGCGTGCTTTGTAC 60.110 55.000 4.76 0.00 44.17 2.90
242 243 0.451135 GAGCTTGCGTGCTTTGTACG 60.451 55.000 4.76 3.98 44.17 3.67
243 244 1.440353 GCTTGCGTGCTTTGTACGG 60.440 57.895 9.83 0.00 41.56 4.02
244 245 1.206578 CTTGCGTGCTTTGTACGGG 59.793 57.895 9.83 0.00 41.56 5.28
245 246 2.780149 CTTGCGTGCTTTGTACGGGC 62.780 60.000 9.83 0.00 41.56 6.13
246 247 3.047877 GCGTGCTTTGTACGGGCT 61.048 61.111 9.83 0.00 41.56 5.19
247 248 2.613506 GCGTGCTTTGTACGGGCTT 61.614 57.895 9.83 0.00 41.56 4.35
248 249 1.495951 CGTGCTTTGTACGGGCTTC 59.504 57.895 0.51 0.65 37.94 3.86
249 250 1.495951 GTGCTTTGTACGGGCTTCG 59.504 57.895 6.19 0.00 45.88 3.79
250 251 1.669760 TGCTTTGTACGGGCTTCGG 60.670 57.895 5.17 0.00 44.45 4.30
251 252 3.035576 GCTTTGTACGGGCTTCGGC 62.036 63.158 5.17 0.00 44.45 5.54
262 263 3.924238 GCTTCGGCCATGTAACATG 57.076 52.632 2.24 0.00 34.32 3.21
263 264 1.094785 GCTTCGGCCATGTAACATGT 58.905 50.000 2.24 0.00 34.32 3.21
264 265 1.472480 GCTTCGGCCATGTAACATGTT 59.528 47.619 16.68 16.68 34.32 2.71
265 266 2.731968 GCTTCGGCCATGTAACATGTTG 60.732 50.000 21.42 4.75 34.32 3.33
266 267 0.808125 TCGGCCATGTAACATGTTGC 59.192 50.000 21.42 19.93 0.00 4.17
267 268 0.810648 CGGCCATGTAACATGTTGCT 59.189 50.000 24.30 9.82 0.00 3.91
268 269 1.467883 CGGCCATGTAACATGTTGCTG 60.468 52.381 24.30 17.53 0.00 4.41
269 270 1.135024 GGCCATGTAACATGTTGCTGG 60.135 52.381 26.01 26.01 31.83 4.85
270 271 1.736696 GCCATGTAACATGTTGCTGGC 60.737 52.381 32.36 32.36 39.73 4.85
271 272 1.135024 CCATGTAACATGTTGCTGGCC 60.135 52.381 24.30 0.00 0.00 5.36
272 273 1.820519 CATGTAACATGTTGCTGGCCT 59.179 47.619 24.30 4.79 0.00 5.19
273 274 1.246649 TGTAACATGTTGCTGGCCTG 58.753 50.000 24.30 4.26 0.00 4.85
274 275 0.109132 GTAACATGTTGCTGGCCTGC 60.109 55.000 26.46 26.46 0.00 4.85
275 276 0.251297 TAACATGTTGCTGGCCTGCT 60.251 50.000 31.50 14.67 0.00 4.24
276 277 1.117142 AACATGTTGCTGGCCTGCTT 61.117 50.000 31.50 15.99 0.00 3.91
277 278 1.080093 CATGTTGCTGGCCTGCTTG 60.080 57.895 31.50 20.10 0.00 4.01
278 279 1.228644 ATGTTGCTGGCCTGCTTGA 60.229 52.632 31.50 17.08 0.00 3.02
279 280 1.530013 ATGTTGCTGGCCTGCTTGAC 61.530 55.000 31.50 25.37 0.00 3.18
280 281 2.598394 TTGCTGGCCTGCTTGACC 60.598 61.111 31.50 5.99 0.00 4.02
281 282 3.137385 TTGCTGGCCTGCTTGACCT 62.137 57.895 31.50 0.00 0.00 3.85
282 283 2.282745 GCTGGCCTGCTTGACCTT 60.283 61.111 25.99 0.00 0.00 3.50
283 284 1.905354 GCTGGCCTGCTTGACCTTT 60.905 57.895 25.99 0.00 0.00 3.11
284 285 1.962144 CTGGCCTGCTTGACCTTTG 59.038 57.895 3.32 0.00 0.00 2.77
285 286 2.151049 CTGGCCTGCTTGACCTTTGC 62.151 60.000 3.32 0.00 0.00 3.68
286 287 2.653115 GCCTGCTTGACCTTTGCC 59.347 61.111 0.00 0.00 0.00 4.52
287 288 1.905354 GCCTGCTTGACCTTTGCCT 60.905 57.895 0.00 0.00 0.00 4.75
288 289 1.466851 GCCTGCTTGACCTTTGCCTT 61.467 55.000 0.00 0.00 0.00 4.35
289 290 1.909700 CCTGCTTGACCTTTGCCTTA 58.090 50.000 0.00 0.00 0.00 2.69
290 291 2.450476 CCTGCTTGACCTTTGCCTTAT 58.550 47.619 0.00 0.00 0.00 1.73
291 292 2.827921 CCTGCTTGACCTTTGCCTTATT 59.172 45.455 0.00 0.00 0.00 1.40
292 293 3.259123 CCTGCTTGACCTTTGCCTTATTT 59.741 43.478 0.00 0.00 0.00 1.40
293 294 4.462483 CCTGCTTGACCTTTGCCTTATTTA 59.538 41.667 0.00 0.00 0.00 1.40
294 295 5.393461 CCTGCTTGACCTTTGCCTTATTTAG 60.393 44.000 0.00 0.00 0.00 1.85
295 296 4.082245 TGCTTGACCTTTGCCTTATTTAGC 60.082 41.667 0.00 0.00 0.00 3.09
296 297 4.158579 GCTTGACCTTTGCCTTATTTAGCT 59.841 41.667 0.00 0.00 0.00 3.32
297 298 5.336770 GCTTGACCTTTGCCTTATTTAGCTT 60.337 40.000 0.00 0.00 0.00 3.74
298 299 5.897377 TGACCTTTGCCTTATTTAGCTTC 57.103 39.130 0.00 0.00 0.00 3.86
299 300 4.394920 TGACCTTTGCCTTATTTAGCTTCG 59.605 41.667 0.00 0.00 0.00 3.79
300 301 4.585879 ACCTTTGCCTTATTTAGCTTCGA 58.414 39.130 0.00 0.00 0.00 3.71
301 302 5.193679 ACCTTTGCCTTATTTAGCTTCGAT 58.806 37.500 0.00 0.00 0.00 3.59
302 303 5.297029 ACCTTTGCCTTATTTAGCTTCGATC 59.703 40.000 0.00 0.00 0.00 3.69
303 304 5.403897 TTTGCCTTATTTAGCTTCGATCG 57.596 39.130 9.36 9.36 0.00 3.69
304 305 2.800544 TGCCTTATTTAGCTTCGATCGC 59.199 45.455 11.09 0.00 0.00 4.58
305 306 2.800544 GCCTTATTTAGCTTCGATCGCA 59.199 45.455 11.09 0.00 0.00 5.10
306 307 3.433615 GCCTTATTTAGCTTCGATCGCAT 59.566 43.478 11.09 0.00 0.00 4.73
307 308 4.434857 GCCTTATTTAGCTTCGATCGCATC 60.435 45.833 11.09 0.00 0.00 3.91
308 309 4.092091 CCTTATTTAGCTTCGATCGCATCC 59.908 45.833 11.09 0.00 0.00 3.51
309 310 1.487482 TTTAGCTTCGATCGCATCCG 58.513 50.000 11.09 0.00 0.00 4.18
310 311 0.384309 TTAGCTTCGATCGCATCCGT 59.616 50.000 11.09 0.00 35.54 4.69
311 312 0.317854 TAGCTTCGATCGCATCCGTG 60.318 55.000 11.09 0.00 35.54 4.94
312 313 1.878522 GCTTCGATCGCATCCGTGT 60.879 57.895 11.09 0.00 35.54 4.49
313 314 1.812214 GCTTCGATCGCATCCGTGTC 61.812 60.000 11.09 0.00 35.54 3.67
314 315 0.248661 CTTCGATCGCATCCGTGTCT 60.249 55.000 11.09 0.00 35.54 3.41
315 316 0.525455 TTCGATCGCATCCGTGTCTG 60.525 55.000 11.09 0.00 35.54 3.51
316 317 1.946156 CGATCGCATCCGTGTCTGG 60.946 63.158 0.26 0.00 35.54 3.86
317 318 1.592669 GATCGCATCCGTGTCTGGG 60.593 63.158 0.00 0.00 35.54 4.45
318 319 3.740128 ATCGCATCCGTGTCTGGGC 62.740 63.158 0.00 0.00 35.54 5.36
321 322 4.838152 CATCCGTGTCTGGGCCGG 62.838 72.222 5.83 5.83 43.03 6.13
324 325 4.636435 CCGTGTCTGGGCCGGTTT 62.636 66.667 13.14 0.00 37.00 3.27
325 326 3.353836 CGTGTCTGGGCCGGTTTG 61.354 66.667 13.14 0.00 0.00 2.93
326 327 2.983592 GTGTCTGGGCCGGTTTGG 60.984 66.667 13.14 0.00 42.50 3.28
336 337 2.984871 CCGGTTTGGCTTTTGGTTG 58.015 52.632 0.00 0.00 0.00 3.77
337 338 0.531753 CCGGTTTGGCTTTTGGTTGG 60.532 55.000 0.00 0.00 0.00 3.77
338 339 0.176910 CGGTTTGGCTTTTGGTTGGT 59.823 50.000 0.00 0.00 0.00 3.67
339 340 1.662517 GGTTTGGCTTTTGGTTGGTG 58.337 50.000 0.00 0.00 0.00 4.17
340 341 1.065782 GGTTTGGCTTTTGGTTGGTGT 60.066 47.619 0.00 0.00 0.00 4.16
341 342 2.616765 GGTTTGGCTTTTGGTTGGTGTT 60.617 45.455 0.00 0.00 0.00 3.32
342 343 2.393271 TTGGCTTTTGGTTGGTGTTG 57.607 45.000 0.00 0.00 0.00 3.33
343 344 1.270907 TGGCTTTTGGTTGGTGTTGT 58.729 45.000 0.00 0.00 0.00 3.32
344 345 1.625818 TGGCTTTTGGTTGGTGTTGTT 59.374 42.857 0.00 0.00 0.00 2.83
345 346 2.276201 GGCTTTTGGTTGGTGTTGTTC 58.724 47.619 0.00 0.00 0.00 3.18
346 347 2.093711 GGCTTTTGGTTGGTGTTGTTCT 60.094 45.455 0.00 0.00 0.00 3.01
347 348 3.131400 GGCTTTTGGTTGGTGTTGTTCTA 59.869 43.478 0.00 0.00 0.00 2.10
348 349 4.382147 GGCTTTTGGTTGGTGTTGTTCTAA 60.382 41.667 0.00 0.00 0.00 2.10
349 350 4.803613 GCTTTTGGTTGGTGTTGTTCTAAG 59.196 41.667 0.00 0.00 0.00 2.18
350 351 5.393678 GCTTTTGGTTGGTGTTGTTCTAAGA 60.394 40.000 0.00 0.00 0.00 2.10
351 352 5.828299 TTTGGTTGGTGTTGTTCTAAGAG 57.172 39.130 0.00 0.00 0.00 2.85
352 353 4.497291 TGGTTGGTGTTGTTCTAAGAGT 57.503 40.909 0.00 0.00 0.00 3.24
353 354 4.850680 TGGTTGGTGTTGTTCTAAGAGTT 58.149 39.130 0.00 0.00 0.00 3.01
354 355 5.991861 TGGTTGGTGTTGTTCTAAGAGTTA 58.008 37.500 0.00 0.00 0.00 2.24
355 356 6.597562 TGGTTGGTGTTGTTCTAAGAGTTAT 58.402 36.000 0.00 0.00 0.00 1.89
356 357 6.485313 TGGTTGGTGTTGTTCTAAGAGTTATG 59.515 38.462 0.00 0.00 0.00 1.90
357 358 6.485648 GGTTGGTGTTGTTCTAAGAGTTATGT 59.514 38.462 0.00 0.00 0.00 2.29
358 359 7.307811 GGTTGGTGTTGTTCTAAGAGTTATGTC 60.308 40.741 0.00 0.00 0.00 3.06
359 360 5.924254 TGGTGTTGTTCTAAGAGTTATGTCG 59.076 40.000 0.00 0.00 0.00 4.35
360 361 5.924825 GGTGTTGTTCTAAGAGTTATGTCGT 59.075 40.000 0.00 0.00 0.00 4.34
361 362 6.128902 GGTGTTGTTCTAAGAGTTATGTCGTG 60.129 42.308 0.00 0.00 0.00 4.35
362 363 6.420008 GTGTTGTTCTAAGAGTTATGTCGTGT 59.580 38.462 0.00 0.00 0.00 4.49
363 364 6.982141 TGTTGTTCTAAGAGTTATGTCGTGTT 59.018 34.615 0.00 0.00 0.00 3.32
364 365 8.136800 TGTTGTTCTAAGAGTTATGTCGTGTTA 58.863 33.333 0.00 0.00 0.00 2.41
365 366 8.423215 GTTGTTCTAAGAGTTATGTCGTGTTAC 58.577 37.037 0.00 0.00 0.00 2.50
366 367 7.650890 TGTTCTAAGAGTTATGTCGTGTTACA 58.349 34.615 0.00 0.00 0.00 2.41
367 368 7.592533 TGTTCTAAGAGTTATGTCGTGTTACAC 59.407 37.037 5.27 5.27 30.75 2.90
368 369 7.444629 TCTAAGAGTTATGTCGTGTTACACT 57.555 36.000 13.86 0.00 31.34 3.55
369 370 7.303261 TCTAAGAGTTATGTCGTGTTACACTG 58.697 38.462 13.86 7.38 31.34 3.66
370 371 5.449107 AGAGTTATGTCGTGTTACACTGT 57.551 39.130 13.86 0.00 31.34 3.55
371 372 5.839621 AGAGTTATGTCGTGTTACACTGTT 58.160 37.500 13.86 0.00 31.34 3.16
372 373 6.278363 AGAGTTATGTCGTGTTACACTGTTT 58.722 36.000 13.86 0.00 31.34 2.83
373 374 6.200286 AGAGTTATGTCGTGTTACACTGTTTG 59.800 38.462 13.86 0.00 31.34 2.93
374 375 5.813672 AGTTATGTCGTGTTACACTGTTTGT 59.186 36.000 13.86 0.00 42.84 2.83
375 376 6.314400 AGTTATGTCGTGTTACACTGTTTGTT 59.686 34.615 13.86 0.00 39.91 2.83
376 377 4.329296 TGTCGTGTTACACTGTTTGTTG 57.671 40.909 13.86 0.00 39.91 3.33
377 378 3.125487 TGTCGTGTTACACTGTTTGTTGG 59.875 43.478 13.86 0.00 39.91 3.77
378 379 2.678836 TCGTGTTACACTGTTTGTTGGG 59.321 45.455 13.86 0.00 39.91 4.12
379 380 2.223386 CGTGTTACACTGTTTGTTGGGG 60.223 50.000 13.86 0.00 39.91 4.96
380 381 2.100087 GTGTTACACTGTTTGTTGGGGG 59.900 50.000 8.41 0.00 39.91 5.40
381 382 1.067974 GTTACACTGTTTGTTGGGGGC 59.932 52.381 0.00 0.00 39.91 5.80
382 383 0.553819 TACACTGTTTGTTGGGGGCT 59.446 50.000 0.00 0.00 39.91 5.19
383 384 0.325203 ACACTGTTTGTTGGGGGCTT 60.325 50.000 0.00 0.00 33.09 4.35
384 385 0.829990 CACTGTTTGTTGGGGGCTTT 59.170 50.000 0.00 0.00 0.00 3.51
385 386 2.035632 CACTGTTTGTTGGGGGCTTTA 58.964 47.619 0.00 0.00 0.00 1.85
386 387 2.632512 CACTGTTTGTTGGGGGCTTTAT 59.367 45.455 0.00 0.00 0.00 1.40
387 388 3.070878 CACTGTTTGTTGGGGGCTTTATT 59.929 43.478 0.00 0.00 0.00 1.40
388 389 4.282195 CACTGTTTGTTGGGGGCTTTATTA 59.718 41.667 0.00 0.00 0.00 0.98
389 390 4.902448 ACTGTTTGTTGGGGGCTTTATTAA 59.098 37.500 0.00 0.00 0.00 1.40
390 391 5.011635 ACTGTTTGTTGGGGGCTTTATTAAG 59.988 40.000 0.00 0.00 34.36 1.85
391 392 4.902448 TGTTTGTTGGGGGCTTTATTAAGT 59.098 37.500 0.00 0.00 33.74 2.24
392 393 5.367060 TGTTTGTTGGGGGCTTTATTAAGTT 59.633 36.000 0.00 0.00 33.74 2.66
393 394 6.553852 TGTTTGTTGGGGGCTTTATTAAGTTA 59.446 34.615 0.00 0.00 33.74 2.24
394 395 7.070821 TGTTTGTTGGGGGCTTTATTAAGTTAA 59.929 33.333 0.00 0.00 33.74 2.01
395 396 7.613551 TTGTTGGGGGCTTTATTAAGTTAAA 57.386 32.000 0.00 0.00 33.74 1.52
396 397 7.234661 TGTTGGGGGCTTTATTAAGTTAAAG 57.765 36.000 0.00 4.78 40.56 1.85
397 398 6.783482 TGTTGGGGGCTTTATTAAGTTAAAGT 59.217 34.615 0.00 0.00 40.02 2.66
398 399 7.290481 TGTTGGGGGCTTTATTAAGTTAAAGTT 59.710 33.333 0.00 0.00 40.02 2.66
399 400 7.234661 TGGGGGCTTTATTAAGTTAAAGTTG 57.765 36.000 0.00 0.00 40.02 3.16
400 401 6.103997 GGGGGCTTTATTAAGTTAAAGTTGC 58.896 40.000 0.00 3.05 40.02 4.17
401 402 6.295405 GGGGGCTTTATTAAGTTAAAGTTGCA 60.295 38.462 0.00 0.00 40.02 4.08
402 403 6.588756 GGGGCTTTATTAAGTTAAAGTTGCAC 59.411 38.462 0.00 4.01 40.02 4.57
403 404 6.307077 GGGCTTTATTAAGTTAAAGTTGCACG 59.693 38.462 0.00 0.00 40.02 5.34
404 405 6.183359 GGCTTTATTAAGTTAAAGTTGCACGC 60.183 38.462 0.00 0.00 40.02 5.34
405 406 6.361214 GCTTTATTAAGTTAAAGTTGCACGCA 59.639 34.615 0.00 0.00 40.02 5.24
406 407 7.061789 GCTTTATTAAGTTAAAGTTGCACGCAT 59.938 33.333 0.00 0.00 40.02 4.73
407 408 8.804688 TTTATTAAGTTAAAGTTGCACGCATT 57.195 26.923 0.00 0.00 0.00 3.56
408 409 6.927933 ATTAAGTTAAAGTTGCACGCATTC 57.072 33.333 0.00 0.00 0.00 2.67
409 410 4.568152 AAGTTAAAGTTGCACGCATTCT 57.432 36.364 0.00 0.00 0.00 2.40
410 411 3.888934 AGTTAAAGTTGCACGCATTCTG 58.111 40.909 0.00 0.00 0.00 3.02
411 412 2.979813 GTTAAAGTTGCACGCATTCTGG 59.020 45.455 0.00 0.00 0.00 3.86
412 413 0.318955 AAAGTTGCACGCATTCTGGC 60.319 50.000 0.00 0.00 0.00 4.85
420 421 3.876300 GCATTCTGGCGTCTTCGT 58.124 55.556 0.00 0.00 39.49 3.85
421 422 2.162716 GCATTCTGGCGTCTTCGTT 58.837 52.632 0.00 0.00 39.49 3.85
422 423 0.095417 GCATTCTGGCGTCTTCGTTC 59.905 55.000 0.00 0.00 39.49 3.95
423 424 1.714794 CATTCTGGCGTCTTCGTTCT 58.285 50.000 0.00 0.00 39.49 3.01
424 425 2.876091 CATTCTGGCGTCTTCGTTCTA 58.124 47.619 0.00 0.00 39.49 2.10
425 426 3.250744 CATTCTGGCGTCTTCGTTCTAA 58.749 45.455 0.00 0.00 39.49 2.10
426 427 3.374220 TTCTGGCGTCTTCGTTCTAAA 57.626 42.857 0.00 0.00 39.49 1.85
427 428 3.374220 TCTGGCGTCTTCGTTCTAAAA 57.626 42.857 0.00 0.00 39.49 1.52
428 429 3.719924 TCTGGCGTCTTCGTTCTAAAAA 58.280 40.909 0.00 0.00 39.49 1.94
495 496 2.997986 GGTCGAAAATGTATCACACCGT 59.002 45.455 0.00 0.00 0.00 4.83
496 497 3.181524 GGTCGAAAATGTATCACACCGTG 60.182 47.826 0.00 0.00 34.45 4.94
584 610 1.291132 GATGTCGGCTAAGTTGCTCC 58.709 55.000 0.00 0.00 0.00 4.70
623 649 1.869767 GTTTCTGCCACTGTGACTCTG 59.130 52.381 9.86 2.81 0.00 3.35
643 677 1.920574 GCGAGGCAGCGTGTATATATG 59.079 52.381 0.00 0.00 0.00 1.78
706 744 1.135199 CCAGTCTTGGCACGTACGTAT 60.135 52.381 22.34 0.00 37.73 3.06
707 745 2.097954 CCAGTCTTGGCACGTACGTATA 59.902 50.000 22.34 7.46 37.73 1.47
710 748 2.848302 GTCTTGGCACGTACGTATACAC 59.152 50.000 22.34 9.34 0.00 2.90
739 777 4.569162 TCGTTGAGTTGTAAAGTTCCACAG 59.431 41.667 0.00 0.00 0.00 3.66
740 778 4.598062 GTTGAGTTGTAAAGTTCCACAGC 58.402 43.478 0.00 0.00 0.00 4.40
743 781 5.616270 TGAGTTGTAAAGTTCCACAGCATA 58.384 37.500 7.02 0.00 0.00 3.14
744 782 5.700832 TGAGTTGTAAAGTTCCACAGCATAG 59.299 40.000 7.02 0.00 0.00 2.23
745 783 4.455877 AGTTGTAAAGTTCCACAGCATAGC 59.544 41.667 7.02 0.00 0.00 2.97
776 814 0.324285 AGCACTCCCTCTGCAGAAAG 59.676 55.000 18.85 16.75 37.08 2.62
777 815 1.304509 GCACTCCCTCTGCAGAAAGC 61.305 60.000 18.85 11.25 45.96 3.51
778 816 0.676151 CACTCCCTCTGCAGAAAGCC 60.676 60.000 18.85 0.00 44.83 4.35
779 817 1.130054 ACTCCCTCTGCAGAAAGCCA 61.130 55.000 18.85 0.00 44.83 4.75
780 818 0.392729 CTCCCTCTGCAGAAAGCCAG 60.393 60.000 18.85 4.57 44.83 4.85
781 819 0.837691 TCCCTCTGCAGAAAGCCAGA 60.838 55.000 18.85 5.48 44.83 3.86
782 820 0.037303 CCCTCTGCAGAAAGCCAGAA 59.963 55.000 18.85 0.00 44.83 3.02
783 821 1.546323 CCCTCTGCAGAAAGCCAGAAA 60.546 52.381 18.85 0.00 44.83 2.52
786 824 2.224606 TCTGCAGAAAGCCAGAAACTG 58.775 47.619 15.67 0.00 44.83 3.16
823 861 6.212791 AGCGGTACATGTATATGGAGGTAATT 59.787 38.462 9.18 0.00 38.66 1.40
856 894 4.047822 TGGATGTCATTGTTTCGCAAAAC 58.952 39.130 0.00 0.00 44.18 2.43
857 895 3.119463 GGATGTCATTGTTTCGCAAAACG 59.881 43.478 0.00 0.00 46.39 3.60
858 896 3.138205 TGTCATTGTTTCGCAAAACGT 57.862 38.095 0.00 0.00 46.39 3.99
859 897 2.848887 TGTCATTGTTTCGCAAAACGTG 59.151 40.909 0.00 0.00 46.39 4.49
931 992 2.621998 CTGCCAGCAAAATATCTCCTGG 59.378 50.000 0.00 0.00 44.53 4.45
932 993 1.959282 GCCAGCAAAATATCTCCTGGG 59.041 52.381 7.06 0.00 42.53 4.45
933 994 2.423373 GCCAGCAAAATATCTCCTGGGA 60.423 50.000 7.06 0.00 42.53 4.37
961 1022 0.106719 CTTATTCCACCACCGGCCAT 60.107 55.000 0.00 0.00 0.00 4.40
1045 1110 3.011517 AAGAGCCATCCCACGCCT 61.012 61.111 0.00 0.00 0.00 5.52
1046 1111 3.335356 AAGAGCCATCCCACGCCTG 62.335 63.158 0.00 0.00 0.00 4.85
1047 1112 4.101448 GAGCCATCCCACGCCTGT 62.101 66.667 0.00 0.00 0.00 4.00
1048 1113 4.415150 AGCCATCCCACGCCTGTG 62.415 66.667 0.00 0.00 46.00 3.66
1058 1123 3.834732 ACGCCTGTGAATGACCTAC 57.165 52.632 0.00 0.00 0.00 3.18
1065 1130 3.368013 CCTGTGAATGACCTACGCTACAA 60.368 47.826 0.00 0.00 0.00 2.41
1066 1131 4.433615 CTGTGAATGACCTACGCTACAAT 58.566 43.478 0.00 0.00 0.00 2.71
1067 1132 4.430007 TGTGAATGACCTACGCTACAATC 58.570 43.478 0.00 0.00 0.00 2.67
1068 1133 3.802685 GTGAATGACCTACGCTACAATCC 59.197 47.826 0.00 0.00 0.00 3.01
1111 1184 1.488705 TTCCACTCCCGGACTTGCAT 61.489 55.000 0.73 0.00 33.75 3.96
1130 1203 0.886938 TCGAAGCAATGGCGTCCAAA 60.887 50.000 2.15 0.00 44.36 3.28
1131 1204 0.729140 CGAAGCAATGGCGTCCAAAC 60.729 55.000 2.15 0.00 44.36 2.93
1136 1209 1.152652 AATGGCGTCCAAACCCACA 60.153 52.632 2.68 0.00 36.95 4.17
1139 1212 2.904866 GCGTCCAAACCCACAGCA 60.905 61.111 0.00 0.00 0.00 4.41
1494 1567 2.236146 TGCTCGTGAAGTCCCAACATAT 59.764 45.455 0.00 0.00 0.00 1.78
1528 1604 5.920193 AAAAACATGCATGCATACTACCT 57.080 34.783 31.73 12.83 34.91 3.08
1530 1606 6.377327 AAAACATGCATGCATACTACCTAC 57.623 37.500 31.73 0.00 34.91 3.18
1537 1622 4.461405 CATGCATACTACCTACGTACGTC 58.539 47.826 26.53 6.83 0.00 4.34
1568 1653 7.335924 GGTGTGCTTAATTTACCTTCTCATGTA 59.664 37.037 0.00 0.00 0.00 2.29
1573 1658 7.490962 TTAATTTACCTTCTCATGTATGCCG 57.509 36.000 0.00 0.00 0.00 5.69
1742 1831 7.042119 CGTGTATGTCCAAGCATAAATGTGATA 60.042 37.037 0.00 0.00 33.67 2.15
1761 1850 9.747293 ATGTGATATTCTCTCTATTCATATGCG 57.253 33.333 0.00 0.00 0.00 4.73
1832 1930 7.919091 CGGTACATACTGAAATAGCTGTCTTTA 59.081 37.037 0.00 0.00 34.49 1.85
1851 1949 7.172532 TGTCTTTATTTAGGTAGTGCACACAAG 59.827 37.037 21.04 11.79 0.00 3.16
1862 1972 8.512138 AGGTAGTGCACACAAGTAAAATTATTC 58.488 33.333 21.04 0.00 0.00 1.75
1987 2099 6.398095 AGAAGAAAAGTTTGTGTTTTCCCTG 58.602 36.000 5.00 0.00 42.49 4.45
2046 2158 3.777106 TTTTGGAGCTCACATGACTCT 57.223 42.857 17.19 0.00 0.00 3.24
2055 2167 6.343716 AGCTCACATGACTCTAATCTATGG 57.656 41.667 0.00 0.00 0.00 2.74
2060 2172 6.552725 TCACATGACTCTAATCTATGGCTCTT 59.447 38.462 0.00 0.00 0.00 2.85
2109 2222 3.691342 TGCGACCTTAGCACGGCT 61.691 61.111 3.87 3.87 43.41 5.52
2110 2223 2.344981 TGCGACCTTAGCACGGCTA 61.345 57.895 1.99 1.99 40.44 3.93
2111 2224 1.877165 GCGACCTTAGCACGGCTAC 60.877 63.158 5.27 0.00 41.12 3.58
2144 2257 7.398829 TGTCTATTATCACAAAGTTTGCCCTA 58.601 34.615 15.59 1.99 0.00 3.53
2154 2267 1.002087 AGTTTGCCCTACTTCGGTGAG 59.998 52.381 0.00 0.00 0.00 3.51
2155 2268 1.001633 GTTTGCCCTACTTCGGTGAGA 59.998 52.381 0.00 0.00 0.00 3.27
2157 2270 0.970937 TGCCCTACTTCGGTGAGAGG 60.971 60.000 0.00 0.00 0.00 3.69
2161 2274 1.618888 CCTACTTCGGTGAGAGGGGAA 60.619 57.143 0.00 0.00 0.00 3.97
2169 2282 1.003233 GGTGAGAGGGGAACGTTGATT 59.997 52.381 5.00 0.00 0.00 2.57
2182 2295 3.304382 CGTTGATTATGACGTGCCTTC 57.696 47.619 0.00 0.00 34.75 3.46
2184 2297 1.934589 TGATTATGACGTGCCTTCGG 58.065 50.000 0.00 0.00 34.94 4.30
2206 2319 4.065088 GCTCACTTCAATACTTGTGGTCA 58.935 43.478 0.00 0.00 0.00 4.02
2209 2322 6.114187 TCACTTCAATACTTGTGGTCATCT 57.886 37.500 0.00 0.00 0.00 2.90
2213 2326 7.276658 CACTTCAATACTTGTGGTCATCTCTAC 59.723 40.741 0.00 0.00 0.00 2.59
2223 2336 3.643320 TGGTCATCTCTACATGGTCCATC 59.357 47.826 0.00 0.00 0.00 3.51
2342 2456 8.579850 AGCACAATGAATAGATTGGAAGTTTA 57.420 30.769 0.00 0.00 37.60 2.01
2394 2508 8.844244 CATTGAATAGATTGGAAAGAGGGTAAG 58.156 37.037 0.00 0.00 0.00 2.34
2405 2519 7.166167 TGGAAAGAGGGTAAGACAAGAATAAC 58.834 38.462 0.00 0.00 0.00 1.89
2410 2524 6.443849 AGAGGGTAAGACAAGAATAACCATGA 59.556 38.462 0.00 0.00 0.00 3.07
2419 2533 8.324306 AGACAAGAATAACCATGATCAAGAAGA 58.676 33.333 0.00 0.00 0.00 2.87
2421 2535 9.300681 ACAAGAATAACCATGATCAAGAAGAAA 57.699 29.630 0.00 0.00 0.00 2.52
2456 2570 5.223382 CCATGTAGCTACCACTAATTCTCG 58.777 45.833 21.01 0.00 0.00 4.04
2467 2581 6.644347 ACCACTAATTCTCGACATGATCTTT 58.356 36.000 0.00 0.00 0.00 2.52
2497 2612 5.072040 TGCTCATTTTTAGGGCTAAAAGC 57.928 39.130 0.00 0.00 43.36 3.51
2525 2640 7.917505 GCTTTAAGACTCAATAATGTTCATGGG 59.082 37.037 0.00 0.00 0.00 4.00
2584 2699 4.821589 GGCCTTCGAGGGTGAGCG 62.822 72.222 15.82 0.00 35.37 5.03
2603 2718 3.654020 GCCTTCCGCATCATCCGC 61.654 66.667 0.00 0.00 37.47 5.54
2606 2721 1.958205 CTTCCGCATCATCCGCTCC 60.958 63.158 0.00 0.00 0.00 4.70
2610 2725 3.344215 GCATCATCCGCTCCGCAG 61.344 66.667 0.00 0.00 0.00 5.18
2649 2764 3.473647 CAGGGGCTCTCCGCATCA 61.474 66.667 0.00 0.00 46.85 3.07
2651 2766 2.074948 AGGGGCTCTCCGCATCATT 61.075 57.895 1.31 0.00 46.85 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 1.269448 GCCGGATGAGTTGAAAAGCAA 59.731 47.619 5.05 0.00 0.00 3.91
7 8 0.881118 GCCGGATGAGTTGAAAAGCA 59.119 50.000 5.05 0.00 0.00 3.91
8 9 1.168714 AGCCGGATGAGTTGAAAAGC 58.831 50.000 5.05 0.00 0.00 3.51
9 10 6.867662 ATATTAGCCGGATGAGTTGAAAAG 57.132 37.500 5.05 0.00 0.00 2.27
10 11 8.918202 ATAATATTAGCCGGATGAGTTGAAAA 57.082 30.769 5.05 0.00 0.00 2.29
11 12 8.918202 AATAATATTAGCCGGATGAGTTGAAA 57.082 30.769 5.05 0.00 0.00 2.69
12 13 8.918202 AAATAATATTAGCCGGATGAGTTGAA 57.082 30.769 5.05 0.00 0.00 2.69
44 45 0.240411 CTGCTGCAAGAAGAGGTTGC 59.760 55.000 3.02 0.82 45.09 4.17
45 46 1.266175 CACTGCTGCAAGAAGAGGTTG 59.734 52.381 3.02 0.00 45.09 3.77
46 47 1.141657 TCACTGCTGCAAGAAGAGGTT 59.858 47.619 3.02 0.00 45.09 3.50
47 48 0.761187 TCACTGCTGCAAGAAGAGGT 59.239 50.000 3.02 0.00 45.09 3.85
48 49 1.805345 CTTCACTGCTGCAAGAAGAGG 59.195 52.381 27.23 11.41 45.09 3.69
49 50 2.479656 GACTTCACTGCTGCAAGAAGAG 59.520 50.000 33.03 19.41 45.09 2.85
50 51 2.487934 GACTTCACTGCTGCAAGAAGA 58.512 47.619 33.03 16.23 45.09 2.87
52 53 1.597742 GGACTTCACTGCTGCAAGAA 58.402 50.000 14.10 14.10 34.07 2.52
53 54 0.601046 CGGACTTCACTGCTGCAAGA 60.601 55.000 3.02 1.76 34.07 3.02
54 55 0.882042 ACGGACTTCACTGCTGCAAG 60.882 55.000 3.02 0.05 0.00 4.01
55 56 0.463654 AACGGACTTCACTGCTGCAA 60.464 50.000 3.02 0.00 0.00 4.08
56 57 1.146041 AACGGACTTCACTGCTGCA 59.854 52.632 0.88 0.88 0.00 4.41
57 58 1.571460 CAACGGACTTCACTGCTGC 59.429 57.895 0.00 0.00 0.00 5.25
58 59 1.230635 CCCAACGGACTTCACTGCTG 61.231 60.000 0.00 0.00 0.00 4.41
59 60 1.071471 CCCAACGGACTTCACTGCT 59.929 57.895 0.00 0.00 0.00 4.24
60 61 1.966451 CCCCAACGGACTTCACTGC 60.966 63.158 0.00 0.00 0.00 4.40
61 62 0.320771 CTCCCCAACGGACTTCACTG 60.321 60.000 0.00 0.00 34.86 3.66
62 63 1.481056 CCTCCCCAACGGACTTCACT 61.481 60.000 0.00 0.00 34.86 3.41
63 64 1.003718 CCTCCCCAACGGACTTCAC 60.004 63.158 0.00 0.00 34.86 3.18
64 65 2.890766 GCCTCCCCAACGGACTTCA 61.891 63.158 0.00 0.00 34.86 3.02
65 66 2.046217 GCCTCCCCAACGGACTTC 60.046 66.667 0.00 0.00 34.86 3.01
66 67 4.016706 CGCCTCCCCAACGGACTT 62.017 66.667 0.00 0.00 34.86 3.01
67 68 3.892104 TACGCCTCCCCAACGGACT 62.892 63.158 0.00 0.00 34.86 3.85
68 69 2.847435 CTTACGCCTCCCCAACGGAC 62.847 65.000 0.00 0.00 34.86 4.79
69 70 2.604079 TTACGCCTCCCCAACGGA 60.604 61.111 0.00 0.00 38.83 4.69
70 71 2.125269 CTTACGCCTCCCCAACGG 60.125 66.667 0.00 0.00 0.00 4.44
71 72 1.968050 ATCCTTACGCCTCCCCAACG 61.968 60.000 0.00 0.00 0.00 4.10
72 73 0.463833 CATCCTTACGCCTCCCCAAC 60.464 60.000 0.00 0.00 0.00 3.77
73 74 1.912220 CATCCTTACGCCTCCCCAA 59.088 57.895 0.00 0.00 0.00 4.12
74 75 2.742116 GCATCCTTACGCCTCCCCA 61.742 63.158 0.00 0.00 0.00 4.96
75 76 2.111251 GCATCCTTACGCCTCCCC 59.889 66.667 0.00 0.00 0.00 4.81
76 77 1.227674 CAGCATCCTTACGCCTCCC 60.228 63.158 0.00 0.00 0.00 4.30
77 78 0.249657 CTCAGCATCCTTACGCCTCC 60.250 60.000 0.00 0.00 0.00 4.30
78 79 0.747255 TCTCAGCATCCTTACGCCTC 59.253 55.000 0.00 0.00 0.00 4.70
79 80 1.418334 ATCTCAGCATCCTTACGCCT 58.582 50.000 0.00 0.00 0.00 5.52
80 81 2.139118 GAATCTCAGCATCCTTACGCC 58.861 52.381 0.00 0.00 0.00 5.68
81 82 3.056304 GAGAATCTCAGCATCCTTACGC 58.944 50.000 5.22 0.00 0.00 4.42
82 83 4.313277 TGAGAATCTCAGCATCCTTACG 57.687 45.455 9.18 0.00 35.39 3.18
83 84 5.911752 TCTTGAGAATCTCAGCATCCTTAC 58.088 41.667 13.11 0.00 41.75 2.34
84 85 6.344500 GTTCTTGAGAATCTCAGCATCCTTA 58.656 40.000 13.11 0.00 41.75 2.69
85 86 5.184711 GTTCTTGAGAATCTCAGCATCCTT 58.815 41.667 13.11 0.00 41.75 3.36
86 87 4.680172 CGTTCTTGAGAATCTCAGCATCCT 60.680 45.833 13.11 0.00 41.75 3.24
87 88 3.555139 CGTTCTTGAGAATCTCAGCATCC 59.445 47.826 13.11 1.76 41.75 3.51
88 89 3.001127 GCGTTCTTGAGAATCTCAGCATC 59.999 47.826 13.11 5.52 41.75 3.91
89 90 2.935201 GCGTTCTTGAGAATCTCAGCAT 59.065 45.455 13.11 0.00 41.75 3.79
90 91 2.341257 GCGTTCTTGAGAATCTCAGCA 58.659 47.619 13.11 1.24 41.75 4.41
91 92 1.663135 GGCGTTCTTGAGAATCTCAGC 59.337 52.381 13.11 12.22 41.75 4.26
92 93 2.275318 GGGCGTTCTTGAGAATCTCAG 58.725 52.381 13.11 8.00 41.75 3.35
93 94 1.623311 TGGGCGTTCTTGAGAATCTCA 59.377 47.619 9.18 9.18 38.87 3.27
94 95 2.386661 TGGGCGTTCTTGAGAATCTC 57.613 50.000 2.75 2.75 36.33 2.75
95 96 2.303022 TCTTGGGCGTTCTTGAGAATCT 59.697 45.455 0.00 0.00 36.33 2.40
96 97 2.416893 GTCTTGGGCGTTCTTGAGAATC 59.583 50.000 0.00 0.00 36.33 2.52
97 98 2.427506 GTCTTGGGCGTTCTTGAGAAT 58.572 47.619 0.00 0.00 36.33 2.40
98 99 1.542547 GGTCTTGGGCGTTCTTGAGAA 60.543 52.381 0.00 0.00 0.00 2.87
99 100 0.034896 GGTCTTGGGCGTTCTTGAGA 59.965 55.000 0.00 0.00 0.00 3.27
100 101 1.291877 CGGTCTTGGGCGTTCTTGAG 61.292 60.000 0.00 0.00 0.00 3.02
101 102 1.301401 CGGTCTTGGGCGTTCTTGA 60.301 57.895 0.00 0.00 0.00 3.02
102 103 1.301401 TCGGTCTTGGGCGTTCTTG 60.301 57.895 0.00 0.00 0.00 3.02
103 104 1.301479 GTCGGTCTTGGGCGTTCTT 60.301 57.895 0.00 0.00 0.00 2.52
104 105 2.207924 AGTCGGTCTTGGGCGTTCT 61.208 57.895 0.00 0.00 0.00 3.01
105 106 2.027625 CAGTCGGTCTTGGGCGTTC 61.028 63.158 0.00 0.00 0.00 3.95
106 107 1.827399 ATCAGTCGGTCTTGGGCGTT 61.827 55.000 0.00 0.00 0.00 4.84
107 108 2.283529 ATCAGTCGGTCTTGGGCGT 61.284 57.895 0.00 0.00 0.00 5.68
108 109 1.811266 CATCAGTCGGTCTTGGGCG 60.811 63.158 0.00 0.00 0.00 6.13
109 110 2.109126 GCATCAGTCGGTCTTGGGC 61.109 63.158 0.00 0.00 0.00 5.36
110 111 0.321564 TTGCATCAGTCGGTCTTGGG 60.322 55.000 0.00 0.00 0.00 4.12
111 112 1.081892 CTTGCATCAGTCGGTCTTGG 58.918 55.000 0.00 0.00 0.00 3.61
112 113 1.462283 CACTTGCATCAGTCGGTCTTG 59.538 52.381 0.00 0.00 0.00 3.02
113 114 1.070758 ACACTTGCATCAGTCGGTCTT 59.929 47.619 0.00 0.00 0.00 3.01
114 115 0.681733 ACACTTGCATCAGTCGGTCT 59.318 50.000 0.00 0.00 0.00 3.85
115 116 2.363788 TACACTTGCATCAGTCGGTC 57.636 50.000 0.00 0.00 0.00 4.79
116 117 2.028112 ACATACACTTGCATCAGTCGGT 60.028 45.455 0.00 0.00 0.00 4.69
117 118 2.349580 CACATACACTTGCATCAGTCGG 59.650 50.000 0.00 0.00 0.00 4.79
118 119 2.222886 GCACATACACTTGCATCAGTCG 60.223 50.000 0.00 0.00 38.68 4.18
119 120 3.005554 AGCACATACACTTGCATCAGTC 58.994 45.455 0.00 0.00 41.48 3.51
120 121 2.745821 CAGCACATACACTTGCATCAGT 59.254 45.455 0.00 0.00 41.48 3.41
121 122 2.096980 CCAGCACATACACTTGCATCAG 59.903 50.000 0.00 0.00 41.48 2.90
122 123 2.086094 CCAGCACATACACTTGCATCA 58.914 47.619 0.00 0.00 41.48 3.07
123 124 1.202222 GCCAGCACATACACTTGCATC 60.202 52.381 0.00 0.00 41.48 3.91
124 125 0.813184 GCCAGCACATACACTTGCAT 59.187 50.000 0.00 0.00 41.48 3.96
125 126 0.250858 AGCCAGCACATACACTTGCA 60.251 50.000 0.00 0.00 41.48 4.08
126 127 0.883833 AAGCCAGCACATACACTTGC 59.116 50.000 0.00 0.00 39.16 4.01
127 128 3.568538 GAAAAGCCAGCACATACACTTG 58.431 45.455 0.00 0.00 0.00 3.16
128 129 2.226437 CGAAAAGCCAGCACATACACTT 59.774 45.455 0.00 0.00 0.00 3.16
129 130 1.806542 CGAAAAGCCAGCACATACACT 59.193 47.619 0.00 0.00 0.00 3.55
130 131 1.804151 TCGAAAAGCCAGCACATACAC 59.196 47.619 0.00 0.00 0.00 2.90
131 132 2.177394 TCGAAAAGCCAGCACATACA 57.823 45.000 0.00 0.00 0.00 2.29
132 133 3.552604 TTTCGAAAAGCCAGCACATAC 57.447 42.857 8.44 0.00 0.00 2.39
133 134 3.057596 CCTTTTCGAAAAGCCAGCACATA 60.058 43.478 34.89 7.58 43.07 2.29
134 135 2.288395 CCTTTTCGAAAAGCCAGCACAT 60.288 45.455 34.89 0.00 43.07 3.21
135 136 1.066908 CCTTTTCGAAAAGCCAGCACA 59.933 47.619 34.89 8.73 43.07 4.57
136 137 1.602920 CCCTTTTCGAAAAGCCAGCAC 60.603 52.381 34.89 0.00 43.07 4.40
137 138 0.673437 CCCTTTTCGAAAAGCCAGCA 59.327 50.000 34.89 10.08 43.07 4.41
138 139 0.958822 TCCCTTTTCGAAAAGCCAGC 59.041 50.000 34.89 0.00 43.07 4.85
139 140 2.623416 ACTTCCCTTTTCGAAAAGCCAG 59.377 45.455 34.89 29.44 43.07 4.85
140 141 2.360801 CACTTCCCTTTTCGAAAAGCCA 59.639 45.455 34.89 23.83 43.07 4.75
141 142 2.361119 ACACTTCCCTTTTCGAAAAGCC 59.639 45.455 34.89 0.00 43.07 4.35
142 143 3.710326 ACACTTCCCTTTTCGAAAAGC 57.290 42.857 34.89 0.00 43.07 3.51
143 144 6.142817 CACATACACTTCCCTTTTCGAAAAG 58.857 40.000 33.84 33.84 43.82 2.27
144 145 5.506649 GCACATACACTTCCCTTTTCGAAAA 60.507 40.000 21.35 21.35 0.00 2.29
145 146 4.023536 GCACATACACTTCCCTTTTCGAAA 60.024 41.667 6.47 6.47 0.00 3.46
146 147 3.500680 GCACATACACTTCCCTTTTCGAA 59.499 43.478 0.00 0.00 0.00 3.71
147 148 3.071479 GCACATACACTTCCCTTTTCGA 58.929 45.455 0.00 0.00 0.00 3.71
148 149 3.074412 AGCACATACACTTCCCTTTTCG 58.926 45.455 0.00 0.00 0.00 3.46
149 150 3.191371 CCAGCACATACACTTCCCTTTTC 59.809 47.826 0.00 0.00 0.00 2.29
150 151 3.157087 CCAGCACATACACTTCCCTTTT 58.843 45.455 0.00 0.00 0.00 2.27
151 152 2.795329 CCAGCACATACACTTCCCTTT 58.205 47.619 0.00 0.00 0.00 3.11
152 153 1.614317 GCCAGCACATACACTTCCCTT 60.614 52.381 0.00 0.00 0.00 3.95
153 154 0.035056 GCCAGCACATACACTTCCCT 60.035 55.000 0.00 0.00 0.00 4.20
154 155 0.035056 AGCCAGCACATACACTTCCC 60.035 55.000 0.00 0.00 0.00 3.97
155 156 2.555199 CTAGCCAGCACATACACTTCC 58.445 52.381 0.00 0.00 0.00 3.46
156 157 2.555199 CCTAGCCAGCACATACACTTC 58.445 52.381 0.00 0.00 0.00 3.01
157 158 1.210478 CCCTAGCCAGCACATACACTT 59.790 52.381 0.00 0.00 0.00 3.16
158 159 0.833287 CCCTAGCCAGCACATACACT 59.167 55.000 0.00 0.00 0.00 3.55
159 160 0.830648 TCCCTAGCCAGCACATACAC 59.169 55.000 0.00 0.00 0.00 2.90
160 161 1.123077 CTCCCTAGCCAGCACATACA 58.877 55.000 0.00 0.00 0.00 2.29
161 162 0.250081 GCTCCCTAGCCAGCACATAC 60.250 60.000 6.33 0.00 43.40 2.39
162 163 2.136791 GCTCCCTAGCCAGCACATA 58.863 57.895 6.33 0.00 43.40 2.29
163 164 2.914289 GCTCCCTAGCCAGCACAT 59.086 61.111 6.33 0.00 43.40 3.21
172 173 1.677637 GGTGGTCGAAGGCTCCCTAG 61.678 65.000 0.00 0.00 31.13 3.02
173 174 1.684734 GGTGGTCGAAGGCTCCCTA 60.685 63.158 0.00 0.00 31.13 3.53
174 175 3.003763 GGTGGTCGAAGGCTCCCT 61.004 66.667 0.00 0.00 33.87 4.20
175 176 3.319198 TGGTGGTCGAAGGCTCCC 61.319 66.667 0.00 0.00 0.00 4.30
176 177 2.047179 GTGGTGGTCGAAGGCTCC 60.047 66.667 0.00 0.00 0.00 4.70
177 178 2.047179 GGTGGTGGTCGAAGGCTC 60.047 66.667 0.00 0.00 0.00 4.70
178 179 4.003788 CGGTGGTGGTCGAAGGCT 62.004 66.667 0.00 0.00 0.00 4.58
179 180 3.998672 TCGGTGGTGGTCGAAGGC 61.999 66.667 0.00 0.00 32.11 4.35
180 181 2.048503 GTCGGTGGTGGTCGAAGG 60.049 66.667 0.00 0.00 37.14 3.46
181 182 2.430244 CGTCGGTGGTGGTCGAAG 60.430 66.667 0.00 0.00 37.14 3.79
182 183 2.906388 TCGTCGGTGGTGGTCGAA 60.906 61.111 0.00 0.00 37.14 3.71
183 184 3.359523 CTCGTCGGTGGTGGTCGA 61.360 66.667 0.00 0.00 0.00 4.20
184 185 4.415332 CCTCGTCGGTGGTGGTCG 62.415 72.222 0.00 0.00 0.00 4.79
185 186 3.300765 ACCTCGTCGGTGGTGGTC 61.301 66.667 9.45 0.00 46.80 4.02
200 201 3.680786 GCCGCAAAAGGGACCACC 61.681 66.667 0.00 0.00 40.67 4.61
201 202 2.200337 AAGCCGCAAAAGGGACCAC 61.200 57.895 0.00 0.00 0.00 4.16
202 203 2.197324 AAGCCGCAAAAGGGACCA 59.803 55.556 0.00 0.00 0.00 4.02
203 204 1.866853 CTCAAGCCGCAAAAGGGACC 61.867 60.000 0.00 0.00 0.00 4.46
204 205 1.581447 CTCAAGCCGCAAAAGGGAC 59.419 57.895 0.00 0.00 0.00 4.46
205 206 1.603455 CCTCAAGCCGCAAAAGGGA 60.603 57.895 0.00 0.00 0.00 4.20
206 207 1.589716 CTCCTCAAGCCGCAAAAGGG 61.590 60.000 0.00 0.00 0.00 3.95
207 208 1.878775 CTCCTCAAGCCGCAAAAGG 59.121 57.895 0.00 0.00 0.00 3.11
208 209 1.211190 GCTCCTCAAGCCGCAAAAG 59.789 57.895 0.00 0.00 45.92 2.27
209 210 3.354678 GCTCCTCAAGCCGCAAAA 58.645 55.556 0.00 0.00 45.92 2.44
217 218 1.233285 AAGCACGCAAGCTCCTCAAG 61.233 55.000 0.00 0.00 45.89 3.02
218 219 0.819259 AAAGCACGCAAGCTCCTCAA 60.819 50.000 0.00 0.00 45.89 3.02
219 220 1.227943 AAAGCACGCAAGCTCCTCA 60.228 52.632 0.00 0.00 45.89 3.86
220 221 1.208614 CAAAGCACGCAAGCTCCTC 59.791 57.895 0.00 0.00 45.89 3.71
221 222 0.250295 TACAAAGCACGCAAGCTCCT 60.250 50.000 0.00 0.00 45.89 3.69
222 223 0.110192 GTACAAAGCACGCAAGCTCC 60.110 55.000 0.00 0.00 45.89 4.70
223 224 0.451135 CGTACAAAGCACGCAAGCTC 60.451 55.000 0.00 0.00 45.89 4.09
225 226 1.440353 CCGTACAAAGCACGCAAGC 60.440 57.895 0.00 0.00 45.62 4.01
227 228 2.899044 GCCCGTACAAAGCACGCAA 61.899 57.895 0.00 0.00 38.07 4.85
228 229 3.350612 GCCCGTACAAAGCACGCA 61.351 61.111 0.00 0.00 38.07 5.24
229 230 2.508755 GAAGCCCGTACAAAGCACGC 62.509 60.000 0.00 0.00 38.07 5.34
230 231 1.495951 GAAGCCCGTACAAAGCACG 59.504 57.895 0.00 0.00 39.10 5.34
231 232 1.495951 CGAAGCCCGTACAAAGCAC 59.504 57.895 0.00 0.00 0.00 4.40
232 233 1.669760 CCGAAGCCCGTACAAAGCA 60.670 57.895 0.00 0.00 36.31 3.91
233 234 3.035576 GCCGAAGCCCGTACAAAGC 62.036 63.158 0.00 0.00 36.31 3.51
234 235 3.174788 GCCGAAGCCCGTACAAAG 58.825 61.111 0.00 0.00 36.31 2.77
244 245 1.094785 ACATGTTACATGGCCGAAGC 58.905 50.000 26.30 0.00 38.76 3.86
245 246 2.731968 GCAACATGTTACATGGCCGAAG 60.732 50.000 26.30 11.78 0.00 3.79
246 247 1.201181 GCAACATGTTACATGGCCGAA 59.799 47.619 26.30 0.00 0.00 4.30
247 248 0.808125 GCAACATGTTACATGGCCGA 59.192 50.000 26.30 0.00 0.00 5.54
248 249 0.810648 AGCAACATGTTACATGGCCG 59.189 50.000 26.30 15.86 0.00 6.13
249 250 1.135024 CCAGCAACATGTTACATGGCC 60.135 52.381 26.30 14.86 0.00 5.36
250 251 1.736696 GCCAGCAACATGTTACATGGC 60.737 52.381 29.79 29.79 44.27 4.40
251 252 1.135024 GGCCAGCAACATGTTACATGG 60.135 52.381 26.30 22.50 0.00 3.66
252 253 1.820519 AGGCCAGCAACATGTTACATG 59.179 47.619 22.12 22.12 0.00 3.21
253 254 1.820519 CAGGCCAGCAACATGTTACAT 59.179 47.619 11.53 0.00 0.00 2.29
254 255 1.246649 CAGGCCAGCAACATGTTACA 58.753 50.000 11.53 0.00 0.00 2.41
255 256 0.109132 GCAGGCCAGCAACATGTTAC 60.109 55.000 16.36 5.61 0.00 2.50
256 257 0.251297 AGCAGGCCAGCAACATGTTA 60.251 50.000 23.38 0.00 36.85 2.41
257 258 1.117142 AAGCAGGCCAGCAACATGTT 61.117 50.000 23.38 4.92 36.85 2.71
258 259 1.532316 AAGCAGGCCAGCAACATGT 60.532 52.632 23.38 0.00 36.85 3.21
259 260 1.080093 CAAGCAGGCCAGCAACATG 60.080 57.895 23.38 11.37 36.85 3.21
260 261 1.228644 TCAAGCAGGCCAGCAACAT 60.229 52.632 23.38 2.32 36.85 2.71
261 262 2.195411 TCAAGCAGGCCAGCAACA 59.805 55.556 23.38 1.58 36.85 3.33
262 263 2.647297 GTCAAGCAGGCCAGCAAC 59.353 61.111 23.38 13.13 36.85 4.17
263 264 2.598394 GGTCAAGCAGGCCAGCAA 60.598 61.111 23.38 4.26 43.39 3.91
268 269 2.653115 GCAAAGGTCAAGCAGGCC 59.347 61.111 0.00 0.00 44.66 5.19
269 270 1.466851 AAGGCAAAGGTCAAGCAGGC 61.467 55.000 0.00 0.00 0.00 4.85
270 271 1.909700 TAAGGCAAAGGTCAAGCAGG 58.090 50.000 0.00 0.00 0.00 4.85
271 272 4.525912 AAATAAGGCAAAGGTCAAGCAG 57.474 40.909 0.00 0.00 0.00 4.24
272 273 4.082245 GCTAAATAAGGCAAAGGTCAAGCA 60.082 41.667 0.00 0.00 0.00 3.91
273 274 4.158579 AGCTAAATAAGGCAAAGGTCAAGC 59.841 41.667 0.00 0.00 0.00 4.01
274 275 5.904362 AGCTAAATAAGGCAAAGGTCAAG 57.096 39.130 0.00 0.00 0.00 3.02
275 276 5.106317 CGAAGCTAAATAAGGCAAAGGTCAA 60.106 40.000 0.00 0.00 0.00 3.18
276 277 4.394920 CGAAGCTAAATAAGGCAAAGGTCA 59.605 41.667 0.00 0.00 0.00 4.02
277 278 4.634443 TCGAAGCTAAATAAGGCAAAGGTC 59.366 41.667 0.00 0.00 0.00 3.85
278 279 4.585879 TCGAAGCTAAATAAGGCAAAGGT 58.414 39.130 0.00 0.00 0.00 3.50
279 280 5.559035 CGATCGAAGCTAAATAAGGCAAAGG 60.559 44.000 10.26 0.00 0.00 3.11
280 281 5.435557 CGATCGAAGCTAAATAAGGCAAAG 58.564 41.667 10.26 0.00 0.00 2.77
281 282 4.260620 GCGATCGAAGCTAAATAAGGCAAA 60.261 41.667 21.57 0.00 0.00 3.68
282 283 3.247648 GCGATCGAAGCTAAATAAGGCAA 59.752 43.478 21.57 0.00 0.00 4.52
283 284 2.800544 GCGATCGAAGCTAAATAAGGCA 59.199 45.455 21.57 0.00 0.00 4.75
284 285 2.800544 TGCGATCGAAGCTAAATAAGGC 59.199 45.455 21.57 0.00 35.28 4.35
285 286 4.092091 GGATGCGATCGAAGCTAAATAAGG 59.908 45.833 21.57 0.00 35.28 2.69
286 287 4.201532 CGGATGCGATCGAAGCTAAATAAG 60.202 45.833 21.57 0.00 35.28 1.73
287 288 3.673338 CGGATGCGATCGAAGCTAAATAA 59.327 43.478 21.57 0.00 35.28 1.40
288 289 3.242518 CGGATGCGATCGAAGCTAAATA 58.757 45.455 21.57 0.00 35.28 1.40
289 290 2.061773 CGGATGCGATCGAAGCTAAAT 58.938 47.619 21.57 0.00 35.28 1.40
290 291 1.202371 ACGGATGCGATCGAAGCTAAA 60.202 47.619 21.57 0.00 35.28 1.85
291 292 0.384309 ACGGATGCGATCGAAGCTAA 59.616 50.000 21.57 0.00 35.28 3.09
292 293 0.317854 CACGGATGCGATCGAAGCTA 60.318 55.000 21.57 0.00 35.28 3.32
293 294 1.589993 CACGGATGCGATCGAAGCT 60.590 57.895 21.57 0.00 35.28 3.74
294 295 1.812214 GACACGGATGCGATCGAAGC 61.812 60.000 21.57 12.08 0.00 3.86
295 296 0.248661 AGACACGGATGCGATCGAAG 60.249 55.000 21.57 6.73 0.00 3.79
296 297 0.525455 CAGACACGGATGCGATCGAA 60.525 55.000 21.57 9.49 0.00 3.71
297 298 1.064134 CAGACACGGATGCGATCGA 59.936 57.895 21.57 4.34 0.00 3.59
298 299 1.946156 CCAGACACGGATGCGATCG 60.946 63.158 15.49 11.69 0.00 3.69
299 300 1.592669 CCCAGACACGGATGCGATC 60.593 63.158 15.49 10.57 0.00 3.69
300 301 2.501128 CCCAGACACGGATGCGAT 59.499 61.111 15.49 0.00 0.00 4.58
301 302 4.451150 GCCCAGACACGGATGCGA 62.451 66.667 15.49 0.00 0.00 5.10
308 309 3.353836 CAAACCGGCCCAGACACG 61.354 66.667 0.00 0.00 0.00 4.49
309 310 2.983592 CCAAACCGGCCCAGACAC 60.984 66.667 0.00 0.00 0.00 3.67
318 319 0.531753 CCAACCAAAAGCCAAACCGG 60.532 55.000 0.00 0.00 38.11 5.28
319 320 0.176910 ACCAACCAAAAGCCAAACCG 59.823 50.000 0.00 0.00 0.00 4.44
320 321 1.065782 ACACCAACCAAAAGCCAAACC 60.066 47.619 0.00 0.00 0.00 3.27
321 322 2.394930 ACACCAACCAAAAGCCAAAC 57.605 45.000 0.00 0.00 0.00 2.93
322 323 2.039084 ACAACACCAACCAAAAGCCAAA 59.961 40.909 0.00 0.00 0.00 3.28
323 324 1.625818 ACAACACCAACCAAAAGCCAA 59.374 42.857 0.00 0.00 0.00 4.52
324 325 1.270907 ACAACACCAACCAAAAGCCA 58.729 45.000 0.00 0.00 0.00 4.75
325 326 2.093711 AGAACAACACCAACCAAAAGCC 60.094 45.455 0.00 0.00 0.00 4.35
326 327 3.245518 AGAACAACACCAACCAAAAGC 57.754 42.857 0.00 0.00 0.00 3.51
327 328 6.127730 ACTCTTAGAACAACACCAACCAAAAG 60.128 38.462 0.00 0.00 0.00 2.27
328 329 5.712917 ACTCTTAGAACAACACCAACCAAAA 59.287 36.000 0.00 0.00 0.00 2.44
329 330 5.258051 ACTCTTAGAACAACACCAACCAAA 58.742 37.500 0.00 0.00 0.00 3.28
330 331 4.850680 ACTCTTAGAACAACACCAACCAA 58.149 39.130 0.00 0.00 0.00 3.67
331 332 4.497291 ACTCTTAGAACAACACCAACCA 57.503 40.909 0.00 0.00 0.00 3.67
332 333 6.485648 ACATAACTCTTAGAACAACACCAACC 59.514 38.462 0.00 0.00 0.00 3.77
333 334 7.492352 ACATAACTCTTAGAACAACACCAAC 57.508 36.000 0.00 0.00 0.00 3.77
334 335 6.422701 CGACATAACTCTTAGAACAACACCAA 59.577 38.462 0.00 0.00 0.00 3.67
335 336 5.924254 CGACATAACTCTTAGAACAACACCA 59.076 40.000 0.00 0.00 0.00 4.17
336 337 5.924825 ACGACATAACTCTTAGAACAACACC 59.075 40.000 0.00 0.00 0.00 4.16
337 338 6.420008 ACACGACATAACTCTTAGAACAACAC 59.580 38.462 0.00 0.00 0.00 3.32
338 339 6.509656 ACACGACATAACTCTTAGAACAACA 58.490 36.000 0.00 0.00 0.00 3.33
339 340 7.404139 AACACGACATAACTCTTAGAACAAC 57.596 36.000 0.00 0.00 0.00 3.32
340 341 8.136800 TGTAACACGACATAACTCTTAGAACAA 58.863 33.333 0.00 0.00 0.00 2.83
341 342 7.592533 GTGTAACACGACATAACTCTTAGAACA 59.407 37.037 0.00 0.00 36.32 3.18
342 343 7.806960 AGTGTAACACGACATAACTCTTAGAAC 59.193 37.037 0.00 0.00 41.43 3.01
343 344 7.806487 CAGTGTAACACGACATAACTCTTAGAA 59.194 37.037 0.00 0.00 41.43 2.10
344 345 7.040892 ACAGTGTAACACGACATAACTCTTAGA 60.041 37.037 0.00 0.00 41.43 2.10
345 346 7.082602 ACAGTGTAACACGACATAACTCTTAG 58.917 38.462 0.00 0.00 41.43 2.18
346 347 6.973843 ACAGTGTAACACGACATAACTCTTA 58.026 36.000 0.00 0.00 41.43 2.10
347 348 5.839621 ACAGTGTAACACGACATAACTCTT 58.160 37.500 0.00 0.00 41.43 2.85
348 349 5.449107 ACAGTGTAACACGACATAACTCT 57.551 39.130 0.00 0.00 41.43 3.24
349 350 6.019318 ACAAACAGTGTAACACGACATAACTC 60.019 38.462 0.00 0.00 41.43 3.01
350 351 5.813672 ACAAACAGTGTAACACGACATAACT 59.186 36.000 0.00 0.00 41.43 2.24
351 352 6.039781 ACAAACAGTGTAACACGACATAAC 57.960 37.500 0.00 0.00 41.43 1.89
352 353 6.457122 CCAACAAACAGTGTAACACGACATAA 60.457 38.462 0.00 0.00 40.60 1.90
353 354 5.006844 CCAACAAACAGTGTAACACGACATA 59.993 40.000 0.00 0.00 40.60 2.29
354 355 4.201871 CCAACAAACAGTGTAACACGACAT 60.202 41.667 0.00 0.00 40.60 3.06
355 356 3.125487 CCAACAAACAGTGTAACACGACA 59.875 43.478 0.00 0.00 40.60 4.35
356 357 3.486209 CCCAACAAACAGTGTAACACGAC 60.486 47.826 0.00 0.00 40.60 4.34
357 358 2.678836 CCCAACAAACAGTGTAACACGA 59.321 45.455 0.00 0.00 40.60 4.35
358 359 2.223386 CCCCAACAAACAGTGTAACACG 60.223 50.000 0.00 0.00 40.60 4.49
359 360 2.100087 CCCCCAACAAACAGTGTAACAC 59.900 50.000 0.00 0.00 40.60 3.32
360 361 2.379972 CCCCCAACAAACAGTGTAACA 58.620 47.619 0.00 0.00 40.60 2.41
361 362 1.067974 GCCCCCAACAAACAGTGTAAC 59.932 52.381 0.00 0.00 40.60 2.50
362 363 1.063567 AGCCCCCAACAAACAGTGTAA 60.064 47.619 0.00 0.00 40.60 2.41
363 364 0.553819 AGCCCCCAACAAACAGTGTA 59.446 50.000 0.00 0.00 40.60 2.90
364 365 0.325203 AAGCCCCCAACAAACAGTGT 60.325 50.000 0.00 0.00 44.64 3.55
365 366 0.829990 AAAGCCCCCAACAAACAGTG 59.170 50.000 0.00 0.00 0.00 3.66
366 367 2.463047 TAAAGCCCCCAACAAACAGT 57.537 45.000 0.00 0.00 0.00 3.55
367 368 5.011635 ACTTAATAAAGCCCCCAACAAACAG 59.988 40.000 0.00 0.00 36.05 3.16
368 369 4.902448 ACTTAATAAAGCCCCCAACAAACA 59.098 37.500 0.00 0.00 36.05 2.83
369 370 5.477607 ACTTAATAAAGCCCCCAACAAAC 57.522 39.130 0.00 0.00 36.05 2.93
370 371 7.613551 TTAACTTAATAAAGCCCCCAACAAA 57.386 32.000 0.00 0.00 36.05 2.83
371 372 7.290481 ACTTTAACTTAATAAAGCCCCCAACAA 59.710 33.333 8.02 0.00 43.53 2.83
372 373 6.783482 ACTTTAACTTAATAAAGCCCCCAACA 59.217 34.615 8.02 0.00 43.53 3.33
373 374 7.235935 ACTTTAACTTAATAAAGCCCCCAAC 57.764 36.000 8.02 0.00 43.53 3.77
374 375 7.672240 CAACTTTAACTTAATAAAGCCCCCAA 58.328 34.615 8.02 0.00 43.53 4.12
375 376 6.295405 GCAACTTTAACTTAATAAAGCCCCCA 60.295 38.462 8.02 0.00 43.53 4.96
376 377 6.103997 GCAACTTTAACTTAATAAAGCCCCC 58.896 40.000 8.02 0.00 43.53 5.40
377 378 6.588756 GTGCAACTTTAACTTAATAAAGCCCC 59.411 38.462 8.02 0.19 43.53 5.80
378 379 6.307077 CGTGCAACTTTAACTTAATAAAGCCC 59.693 38.462 8.02 0.45 43.53 5.19
379 380 6.183359 GCGTGCAACTTTAACTTAATAAAGCC 60.183 38.462 8.02 0.70 43.53 4.35
380 381 6.361214 TGCGTGCAACTTTAACTTAATAAAGC 59.639 34.615 8.02 0.00 43.53 3.51
381 382 7.845617 TGCGTGCAACTTTAACTTAATAAAG 57.154 32.000 6.92 6.92 44.67 1.85
382 383 8.804688 AATGCGTGCAACTTTAACTTAATAAA 57.195 26.923 0.00 0.00 31.75 1.40
383 384 8.293867 AGAATGCGTGCAACTTTAACTTAATAA 58.706 29.630 0.00 0.00 31.75 1.40
384 385 7.748683 CAGAATGCGTGCAACTTTAACTTAATA 59.251 33.333 0.00 0.00 31.75 0.98
385 386 6.582295 CAGAATGCGTGCAACTTTAACTTAAT 59.418 34.615 0.00 0.00 31.75 1.40
386 387 5.912396 CAGAATGCGTGCAACTTTAACTTAA 59.088 36.000 0.00 0.00 31.75 1.85
387 388 5.448438 CAGAATGCGTGCAACTTTAACTTA 58.552 37.500 0.00 0.00 31.75 2.24
388 389 4.290155 CAGAATGCGTGCAACTTTAACTT 58.710 39.130 0.00 0.00 31.75 2.66
389 390 3.304659 CCAGAATGCGTGCAACTTTAACT 60.305 43.478 0.00 0.00 31.97 2.24
390 391 2.979813 CCAGAATGCGTGCAACTTTAAC 59.020 45.455 0.00 0.00 31.97 2.01
391 392 2.606795 GCCAGAATGCGTGCAACTTTAA 60.607 45.455 0.00 0.00 31.97 1.52
392 393 1.068610 GCCAGAATGCGTGCAACTTTA 60.069 47.619 0.00 0.00 31.97 1.85
393 394 0.318955 GCCAGAATGCGTGCAACTTT 60.319 50.000 0.00 0.00 31.97 2.66
394 395 1.286880 GCCAGAATGCGTGCAACTT 59.713 52.632 0.00 0.00 31.97 2.66
395 396 2.956987 GCCAGAATGCGTGCAACT 59.043 55.556 0.00 0.00 31.97 3.16
403 404 0.095417 GAACGAAGACGCCAGAATGC 59.905 55.000 0.00 0.00 43.96 3.56
404 405 1.714794 AGAACGAAGACGCCAGAATG 58.285 50.000 0.00 0.00 43.96 2.67
405 406 3.587797 TTAGAACGAAGACGCCAGAAT 57.412 42.857 0.00 0.00 43.96 2.40
406 407 3.374220 TTTAGAACGAAGACGCCAGAA 57.626 42.857 0.00 0.00 43.96 3.02
407 408 3.374220 TTTTAGAACGAAGACGCCAGA 57.626 42.857 0.00 0.00 43.96 3.86
426 427 7.504924 TGAGTTGATTACAGAACGGATTTTT 57.495 32.000 0.00 0.00 0.00 1.94
427 428 7.504924 TTGAGTTGATTACAGAACGGATTTT 57.495 32.000 0.00 0.00 0.00 1.82
428 429 7.390440 TCATTGAGTTGATTACAGAACGGATTT 59.610 33.333 0.00 0.00 0.00 2.17
429 430 6.878923 TCATTGAGTTGATTACAGAACGGATT 59.121 34.615 0.00 0.00 0.00 3.01
430 431 6.406370 TCATTGAGTTGATTACAGAACGGAT 58.594 36.000 0.00 0.00 0.00 4.18
431 432 5.789521 TCATTGAGTTGATTACAGAACGGA 58.210 37.500 0.00 0.00 0.00 4.69
432 433 6.480524 TTCATTGAGTTGATTACAGAACGG 57.519 37.500 0.00 0.00 0.00 4.44
433 434 6.017933 GCTTCATTGAGTTGATTACAGAACG 58.982 40.000 0.00 0.00 0.00 3.95
434 435 6.017933 CGCTTCATTGAGTTGATTACAGAAC 58.982 40.000 0.00 0.00 0.00 3.01
435 436 5.122239 CCGCTTCATTGAGTTGATTACAGAA 59.878 40.000 0.00 0.00 0.00 3.02
436 437 4.631377 CCGCTTCATTGAGTTGATTACAGA 59.369 41.667 0.00 0.00 0.00 3.41
437 438 4.393062 ACCGCTTCATTGAGTTGATTACAG 59.607 41.667 0.00 0.00 0.00 2.74
438 439 4.154015 CACCGCTTCATTGAGTTGATTACA 59.846 41.667 0.00 0.00 0.00 2.41
439 440 4.437390 CCACCGCTTCATTGAGTTGATTAC 60.437 45.833 0.00 0.00 0.00 1.89
440 441 3.689161 CCACCGCTTCATTGAGTTGATTA 59.311 43.478 0.00 0.00 0.00 1.75
495 496 1.527433 CTCTCGCCACTCCACTCACA 61.527 60.000 0.00 0.00 0.00 3.58
496 497 1.214062 CTCTCGCCACTCCACTCAC 59.786 63.158 0.00 0.00 0.00 3.51
584 610 1.373748 ACGATGGTGGTTCGTTCCG 60.374 57.895 0.00 0.00 46.96 4.30
623 649 1.920574 CATATATACACGCTGCCTCGC 59.079 52.381 0.00 0.00 0.00 5.03
635 661 8.579863 ACCTTTCGGTTGTAGGTACATATATAC 58.420 37.037 0.00 0.00 42.13 1.47
643 677 3.243839 TGACACCTTTCGGTTGTAGGTAC 60.244 47.826 0.00 0.00 42.13 3.34
688 726 2.749076 TGTATACGTACGTGCCAAGACT 59.251 45.455 30.25 2.64 33.36 3.24
710 748 1.493772 TTACAACTCAACGAGCACCG 58.506 50.000 0.00 0.00 45.44 4.94
765 803 2.225963 CAGTTTCTGGCTTTCTGCAGAG 59.774 50.000 17.43 7.60 45.15 3.35
786 824 1.681793 TGTACCGCTAGCTGATCCTTC 59.318 52.381 13.57 0.00 0.00 3.46
823 861 0.105778 TGACATCCACTCAACGCACA 59.894 50.000 0.00 0.00 0.00 4.57
933 994 2.572104 GTGGTGGAATAAGAGGTGTCCT 59.428 50.000 0.00 0.00 36.03 3.85
1045 1110 3.945981 TTGTAGCGTAGGTCATTCACA 57.054 42.857 0.00 0.00 40.68 3.58
1046 1111 3.802685 GGATTGTAGCGTAGGTCATTCAC 59.197 47.826 0.00 0.00 40.68 3.18
1047 1112 3.449377 TGGATTGTAGCGTAGGTCATTCA 59.551 43.478 0.00 0.00 40.68 2.57
1048 1113 4.051922 CTGGATTGTAGCGTAGGTCATTC 58.948 47.826 0.00 0.00 40.68 2.67
1049 1114 3.704566 TCTGGATTGTAGCGTAGGTCATT 59.295 43.478 0.00 0.00 40.68 2.57
1050 1115 3.296854 TCTGGATTGTAGCGTAGGTCAT 58.703 45.455 0.00 0.00 40.68 3.06
1051 1116 2.688446 CTCTGGATTGTAGCGTAGGTCA 59.312 50.000 0.00 0.00 40.68 4.02
1058 1123 0.108186 TGGTGCTCTGGATTGTAGCG 60.108 55.000 0.00 0.00 39.14 4.26
1065 1130 1.749634 GTACGTAGTGGTGCTCTGGAT 59.250 52.381 0.00 0.00 45.73 3.41
1066 1131 1.171308 GTACGTAGTGGTGCTCTGGA 58.829 55.000 0.00 0.00 45.73 3.86
1067 1132 0.179171 CGTACGTAGTGGTGCTCTGG 60.179 60.000 7.22 0.00 45.73 3.86
1068 1133 0.520404 ACGTACGTAGTGGTGCTCTG 59.480 55.000 21.41 0.00 45.73 3.35
1111 1184 0.886938 TTTGGACGCCATTGCTTCGA 60.887 50.000 0.00 0.00 36.66 3.71
1130 1203 1.603455 CGGGAAACATGCTGTGGGT 60.603 57.895 0.00 0.00 0.00 4.51
1131 1204 2.342650 CCGGGAAACATGCTGTGGG 61.343 63.158 0.00 0.00 0.00 4.61
1136 1209 4.722700 AGCGCCGGGAAACATGCT 62.723 61.111 2.29 0.00 0.00 3.79
1139 1212 1.745489 GAAGAGCGCCGGGAAACAT 60.745 57.895 2.29 0.00 0.00 2.71
1322 1395 1.953138 GACGAGCTGCCCGATCATG 60.953 63.158 11.37 0.00 0.00 3.07
1457 1530 3.063704 CATTTGGAGCCGGCTGCA 61.064 61.111 42.46 42.46 44.83 4.41
1527 1603 2.256174 CACACCAATGGACGTACGTAG 58.744 52.381 22.87 8.90 0.00 3.51
1528 1604 1.669502 GCACACCAATGGACGTACGTA 60.670 52.381 22.87 7.19 0.00 3.57
1529 1605 0.947180 GCACACCAATGGACGTACGT 60.947 55.000 23.04 23.04 0.00 3.57
1530 1606 0.669318 AGCACACCAATGGACGTACG 60.669 55.000 15.01 15.01 0.00 3.67
1537 1622 5.659440 AGGTAAATTAAGCACACCAATGG 57.341 39.130 0.00 0.00 0.00 3.16
1568 1653 3.275999 GGATACAACAAACCTACGGCAT 58.724 45.455 0.00 0.00 0.00 4.40
1573 1658 6.335777 ACATCTACGGATACAACAAACCTAC 58.664 40.000 0.00 0.00 0.00 3.18
1639 1727 5.048364 TGCAGTAAAACACAAACAACTCTGT 60.048 36.000 0.00 0.00 37.39 3.41
1699 1788 1.927174 CACGGGAGAAATTAGCAGTCG 59.073 52.381 0.00 0.00 0.00 4.18
1742 1831 6.352016 ACCACGCATATGAATAGAGAGAAT 57.648 37.500 6.97 0.00 0.00 2.40
1832 1930 7.811117 TTTTACTTGTGTGCACTACCTAAAT 57.189 32.000 19.41 0.00 0.00 1.40
1961 2073 6.873605 AGGGAAAACACAAACTTTTCTTCTTG 59.126 34.615 0.00 0.00 37.63 3.02
1987 2099 1.335496 TGAGCCAAGTTAACGGTTTGC 59.665 47.619 0.00 0.00 0.00 3.68
2046 2158 5.920840 CGTCGATGAAAAGAGCCATAGATTA 59.079 40.000 0.00 0.00 29.68 1.75
2055 2167 2.271800 ACCATCGTCGATGAAAAGAGC 58.728 47.619 31.82 0.00 42.09 4.09
2107 2220 8.575565 TGTGATAATAGACAATCGAAAGTAGC 57.424 34.615 0.00 0.00 0.00 3.58
2110 2223 9.436957 ACTTTGTGATAATAGACAATCGAAAGT 57.563 29.630 0.00 0.00 35.12 2.66
2144 2257 1.533469 CGTTCCCCTCTCACCGAAGT 61.533 60.000 0.00 0.00 0.00 3.01
2154 2267 2.864343 CGTCATAATCAACGTTCCCCTC 59.136 50.000 0.00 0.00 34.30 4.30
2155 2268 2.901249 CGTCATAATCAACGTTCCCCT 58.099 47.619 0.00 0.00 34.30 4.79
2206 2319 4.040047 TGGTTGATGGACCATGTAGAGAT 58.960 43.478 12.99 0.00 44.53 2.75
2249 2363 7.789026 TCAATCATGATAGTCACAGAGAACAT 58.211 34.615 9.04 0.00 0.00 2.71
2355 2469 3.733443 ATTCAATGCGCCCCTTAATTC 57.267 42.857 4.18 0.00 0.00 2.17
2364 2478 3.988379 TTCCAATCTATTCAATGCGCC 57.012 42.857 4.18 0.00 0.00 6.53
2394 2508 8.498054 TCTTCTTGATCATGGTTATTCTTGTC 57.502 34.615 8.60 0.00 0.00 3.18
2421 2535 5.359860 GGTAGCTACATGGCCATTAGTTTTT 59.640 40.000 24.75 10.57 0.00 1.94
2456 2570 5.412594 TGAGCAGGTTAACAAAGATCATGTC 59.587 40.000 8.10 0.00 0.00 3.06
2467 2581 4.219725 GCCCTAAAAATGAGCAGGTTAACA 59.780 41.667 8.10 0.00 0.00 2.41
2497 2612 7.072177 TGAACATTATTGAGTCTTAAAGCCG 57.928 36.000 0.00 0.00 0.00 5.52
2548 2663 1.400530 CCCTAGGAGGCGGGTACTTG 61.401 65.000 11.48 0.00 35.65 3.16
2549 2664 1.075450 CCCTAGGAGGCGGGTACTT 60.075 63.158 11.48 0.00 35.65 2.24
2625 2740 2.741055 GGAGAGCCCCTGAGAAGCC 61.741 68.421 0.00 0.00 0.00 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.