>input_sequence_72298
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------------------------CTATAAATGCTCCACACAGCCATGCCAGAAGAGCCATCCCACGCCTGTGAATGACC
TACGCTACAATCCA----GAGCACCAC----TACGTACGTGCACTTCCACTCCCGGACTTGCATCGAAGCAATGGCGTCC
AAACCCACAGCATGTTTCCCGGCGCTCTTCCTGGCGCTGAACCTCCTCCTGGTCGCCGGGGTCCGCGGCCAGACCCCCGC
GGCCGGCCGCAACCCGTGCCCGACGAACGCGCTGGCCGACCTCAAGGTGTGCGCCGACGTGCTGGTGCTGCTCAAGCTCA
AGATCAACGTGCCGGCCAACCAGCAGTGCTGCCCCATGATCGGGCAGCTCGTCAAGCTCGACGTCGCCGCCTGCCTCTGC
GCCGCCATCAAGCTCAGCGTCCTCGGCATCCCCATCAACCTGCCGCTCGACATCCCCCTCGTCCTCAACTACTGCGGCCG
GAACGCAACTGCAGCCGGCTCCAAATGCTCGTGAAGTCCCAACATATAGCTGATT---AAAAAAAACATGCATGCATACT
ACCTAC---------GTACGTCCATTGGTGTGCTTAATTTACCTTCTCATGTATGCCGTAGGT---TTGTTGTATCCGTA
GATGTTTCGTTGATTGGCATGTCGATGAACATCCCAAAGGGAAATCACAGAGTTGTTTGTGTTTTACTGCAAATA-----
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>chr4A_1_TraesCS4A01G263600
TGAGAGTTGCTTTTCAACTCATCCGGCTAATATTATTTATAAATGCAACCTCTTCTTGCAGCAGTGAAGTCCGTTGGGGA
GGCGTAAGGATGCTGAGATTCTCAAGAACGCCCAAGACCGACTGATGCAAGTGTATGTGCTGGCTTTTCGAAAAGGGAAG
TGTATGTGCTGGCTAGGGAGCCTTCGACCACCACCGACGAGGTGGTCCCTTTTGCGGCTTGAGGAGCTTGCGTGCTTTGT
ACGGGCTTCGGCCATGTAACATGTTGCTGGCCTGCTTGACCTTTGCCTTATTTAGCTTCGATCGCATCCGTGTCTGGGCC
GGTTTGGCTTTTGGTTGGTGTTGTTCTAAGAGTTATGTCGTGTTACACTGTTTGTTGGGGGCTTTATTAAGTTAAAGTTG
CACGCATTCTGGCGTCTTCGTTCTAAAAAAATCCGTTCTGTAATCAACTCAATGAAGCGGTGGCATCTCGTCCTGGTCGA
AAATGTATCACACCGTGTGAGTGGAGTGGCGAGAGCAATCGATTCATCTTTTGAATCTCTTGAA--------CGAGTGGC
-----------------GCGCGCGCACCCGGATGTCGGCTAAGTTGCTCCGGAACGAACCACCATCGTGTTTCTGCCACT
GTGACTCTGCGAGGCAGCGTGTA--------TATATGTACC----TACAACCGAAAGGTGTCAGTAGTGGACGTTCCGGC
CGGCCAGTCTTGGCACGTACGTATACACGGTGCTCGTTGAGTTGTAAAGTTCCACAGCATAGCAGCAGCTAGCCAGCACT
CCCTCTGCAGAAAGCCAGAAACTGAAGGATCAGCTAGCGGTACATGTATATGGAGGTAATTGTGCGTTGAGTGGATGTCA
TTGTTTCGCAAAACGTGCGTGCCGCCGCTACTCGTCTCACGTTCACACACACGCCACTACGAT-----------------
------CGAGCTGCCAGCAAAATATCTCCTGGGAGGACACCTCTTATTCCACCACCGGCCATC----ATCAAATCCACTC
ACGTAGAGTAGAGAGATCATTTGACTATAAATGCTCCACACAGCCATGCCAGAAGAGCCATCCCACGCCTGTGAATGACC
TACGCTACAATCCA----GAGCACCAC----TACGTACGTGCACTTCCACTCCCGGACTTGCATCGAAGCAATGGCGTCC
AAACCCACAGCATGTTTCCCGGCGCTCTTCCTGGCGCTGAACCTCCTCCTGGTCGCCGGGGTCCGCGGCCAGACCCCCGC
GGCCGGCCGCAACCCGTGCCCGACGAACGCGCTGGCCGACCTCAAGGTGTGCGCCGACGTGCTGGTGCTGCTCAAGCTCA
AGATCAACGTGCCGGCCAACCAGCAGTGCTGCCCCATGATCGGGCAGCTCGTCAAGCTCGACGTCGCCGCCTGCCTCTGC
GCCGCCATCAAGCTCAGCGTCCTCGGCATCCCCATCAACCTGCCGCTCGACATCCCCCTCGTCCTCAACTACTGCGGCCG
GAACGCAACTGCAGCCGGCTCCAAATGCTCGTGAAGTCCCAACATATAGCTGATT---AAAAAAAACATGCATGCATACT
ACCTAC---------GTACGTCCATTGGTGTGCTTAATTTACCTTCTCATGTATGCCGTAGGT---TTGTTGTATCCGTA
GATGTTTCGTTGATTGGCATGTCGATGAACATCCCAAAGGGAAATCACAGAGTTGTTTGTGTTTTACTGCAAATAATAAA
CGTTCCTCCAG-TTTGTCAACTGCATGCGACTGCTAATTTCTCCCGTGTATGTCCAAGCATAAATGTGATATTCTCTCTA
TTCATATGCGTGGTTTTCACTTTCAGTGTAATCTCACCGAAATTTCA---------TTAATTTCGGTACATACTGAAATA
GCTGTCTTTATTTAGGTAGTGCACACAAG------------TAAAATTATTCTTTGAATTTTCAAGATATTTGGTTGGAT
CCCAATGAAGTTCAAGTGAAAAATTTCCTTTGTCCGAGACTACTAATTAGCATATGTATA--GCAATACCTACAAGAAGA
AAAGTTTGTGTTTTCCCTGCAAACCGTTAACTTGGCTCATTTTTTGGGTTCAAATTATTTTGGAGCTCACATGACTCTAA
TCTATGGCTCTTTTCATCGACGATGGTCGATGCTCTGGTCCTGTGCGACCTTAGCAC-GGCTACTTTCGATTGTCTATTA
TCACAAAGTTTGCCCTACTTCGGTGAGAGGGGAACGTTGATTATGACGTGCCTTCGGCTCACTTCAATACTTGTGGTCAT
CTCTACATGGTCCATCAACCAGGTTCTATTTTTT-ACATCCAATGTTCTCTGTGACTATCATGATTGAATATGAATAGGT
TGAAAGTTTTCGATGCAAAAAAATTTAAGAAGCACAATGAATAGATTGGAAGTTTATCTTGCAAAAAAGAATTAAGGGGC
GCATTGAATAGATTGGAAAGAGGGTAAGACAAGAATAACCATGATCAAGAAGAAAAAAACTAATGGCCATGTAGCTACCA
CTAATTCTCGACATGATCTTTGTTAACCTGCTCATTTTT-AGGGCTAAAAGCGGCTTTAAGACTCAATAATGTTCATGGG
TATTACTCCTATAAAGGATGCTCAAGTACCCGCCTCCTAGGGGCCTTCGAGGGTGAGCGTGCCTTCCGCATCATCCGCTC
CGCAGAGGCGTGCCACGGGGGCTTCTCAGGGGCTCTCCGCATCATTCGATGAGTTCAAGCGC
>chr4B_438
CTCT----------------------------------------------------------------------------
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-----------------------------------------AATCGATTCAATGAAGCGGTGGCATCTCGTCCTCGTCGA
AAATGTATCGCACCGACTGAGTTGAGTGGCGAGAGCAATCGATTCATCTTTTGAATCTCTTGAAGACTTGAACGAGTGGC
GACGACGCGGCTGCGCTGCGCGCGCACCCGGATGTCGGCTAAGTTGCTCTGGAACGAACCACCATCGTGTTTCTGCCACT
GTGACTCTCTGAGGCAGCGTATATGTACCTAGTACTCCCTCCGAGTACAACCGAAAGGTGTCAATAGTGGACGTTCCGGC
CGGCCTGTCTTGGCACGCACGTA--CATGGTGCTCGTTGCGTTGTAAAGTTCCACAATAT---AGCAGCTAGCCAGCACT
CCGTCTGCAGAAA--------CTCAAGGATCAGCTAGCGGTACATGTATATGGAGGTAATGGTGCGTTGAGTGGATGTCA
TTGTTTCGCAAAA----CGTGCCGCCGCTACTCGTCTCACGTTCACACACACGCCACCACGAT-----------------
------CGAGCTGCCAGCAGAATATCTCCTG---GGACACCTCTTATTCCACCACCGGCCAC-------CAAATCCACTC
ACC-----TAGAGAGATCATTTAACTATAAATGCTCCAGACAGCCATGCCAGAAGAGCCATCCCACGCTCTGC---GAGC
TAAGCTACA----A----GAGCACCAC----TACGTACGTGCACTTCCACTCCCGGACTTGCACCGAAGCAATGGCGTCC
AAGTCCACCGCTTGTTTTCCGGCGCTCTTCCTGGCGCTGAACCTCCTCCTGGTCGCCGGCGTCCGCGGCCAGACCCCCGC
GGCCGGCCGCAACCCGTGCCCGACGAACGCGCTGGCCGACCTCAAGGTGTGCGCCGACGTGCTGGTGCTGCTCAAGCTCA
AGATCAACGTGCCGGCCAACCAGCAGTGCTGCCCGATGATCGGGCAGCTCGTCAAGCTCGACGTCGCCGCCTGCCTCTGC
GCCGCCATCAAGCTCAGCGTCCTCGGCATCCCCGTCAACCTGCCGCTCGACATCCCCCTCGTCCTCAACTACTGCGGCCG
GAACGCAACCGCAGCAGGCTCCAAATGCTCGTGAAGTCCCAACATACAGCTGATTAAAAAAAAAAACATGCATGCATACT
ACTCCTACCTACGTAGTACGTACATTGGTGTGCTTAATTTACCTTCTCATGTGTGCCATAGGT---TTGTTGTATACGTA
GATGTTTCGTTGATTGGCATGTCGATGAACATCCCGAAGGGAAATCGCAGAGTTGTTTGTGTTTTACTGCAAATAATAAA
CGTTACTTCGGTTTTGTCAACCGCATGTGACTGCTAATTTCTCCCCTGTATGTCCAAGCATAAATGTGATCTTCTCTCTA
TTCATATGCATGGTTTTCACTTTCAGTGTAATTTCACTGAAATTTCAGAAATTTCGTTAATTTCGGTACATACGGAAATA
GCTGTCTTTTTTTAGGTAGTGCACCCAAATACAAATTATTTTAAAATTATTTTTTGAATTTTCAAGATATTTGGTTGGAT
CCCAATGAAATTTAAGTGAAAATTTTATTTTGTCCGAGACCACTAATTAGCATATGTATATAGCAATGCCTATAAGAAGA
AAAGTTTGTGTTTTCCATCCAAACCGTTAACTTGGCTCATTTTTTGGGTTCAAATTATTTTGGAGCTGACATGACTCCGA
TCTATGACTCTCTTCATCGGTGATGGTCGATGCTATGGTCCAGTGTGACCTTAGCAC-GCTACTTTTCGATTGTCTATTA
TCACAAAGTTTGCCCTGCTTCGGTAACGGAGGAGCGTTGATGATGAGGT---------TCACTTCAATACTTGTGGTCGT
CGGT-GATGGTCCATGAACCAGGTTCTATTTTTTTACATCCAGTGTTCTCTATGACTATCATGATTGAATATGAATAAAT
TGAAAGTTTCTCGTGCAAAAAAAGTTAAGAAGCACAATGAATAGATTGGAAGTTTCTCTTGCAAAAAAAAATTAAGAAGC
GCATTGAATAGATTGGAAAGAGGGTAATACAAGAATAAACATGGTCAAGAAGCACAAAACTAATGGCCATGTAGCTACCA
CTAATTCCCAACATGATCTTCGTTAACCTGCTCATTTTTTAGGGCTAAAAGTGGCTTTAAGGCTCACTTACGTTCATGGA
TATTACTCCTATAAAGGATGCTGGAGTACCCACCTCCTAGGG--------------------------------------
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>chr4D_442
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-----------------------------------------AATCAACTCAACGAAGAGGTGGCATCTCGTCCTGGTCGA
TAATGCATCACACCGACTGAGTGGAGCGGCGGGAGCAATGGATTCATCTTTTGAATCTCTTGAA--------CGAGTGGC
GACGACGCGGCTGCGCTGCGCGCGCACCCGGATGTCGGCTAAGTTGGTTTGGAACGAACCA---TCGTGTTTGTGCCATC
A--------CGTGGCAGCGTATATGTAAGTATATATCTACC----TACAACCGAAAGGTGACAATAGTGGACGTTCCGGC
CTGTCTTG--------GCACGTA--CATGGTGCTCGTTGAGTTGTAAAGTTCCACAATAT---AGCAGCTAGCCAGCACT
CCGTCTGCAGAAA--------CTCAAGGATCAGCTAGCGTTACATGTATATGGAGGCAATGGCGCGTTGGGTGGATGTCA
GTGTTTTGCAAAA----CGCGCCGCCGCTACCCGTCTTACGTTCACACACACGCCACTACGAGCTGCCACCAAAATACCT
CCACTACGAGCTGCCAGCGAAATATCTCCTG---GGACACCTCTTATTCCACCACCACCGGCCATCAATCAGACCCACTC
ACGTAGATAA--------ATTTGACTATAAATGCTCCACACAGCCATGCCGGAAGAGCCATCCCACGCCCTGC---GACC
TAAGCTACA----ACCCAGAGCACCACTACGTACGTACGTGCACTTCCACTCCCGCACTGCAAA-GAAGCAATGGCGTCC
AAGTCCACCGCTTGTTTCCCGGCGCTCTTCCTGGCGCTCAACCTCCTCCTGGTCGCCGGCGTCCGCGGCCAGA-------
-----GCCGCAACCCGTGCCCGACGAACGCGCTGGCCGACCTCAAGGTGTGCGCCGACGTGCTGGTGCTGCTCAAGCTCA
AGATCAACGTGCCGGCCAACCAGCAGTGCTGCCCGATGATCGGGCAGCTCGTCAAGCTCGACGTCGCCGCCTGCCTCTGC
GCCGCCATCAAGCTCAGCGTCATCGGCATCCCCATCAACCTGCCGCTCGACATCCCCCTCGTCCTCAACTACTGCGGCCG
GAACGCAACCGCAGCCGGCTCCAAATGCTCGTGAAGTCCCAACATAGCTGAT-TT---AAAAAAAACATGCATGCATACT
ACTCCTACCTACGTA---CGTACATTGGTGTGCTTAATTTACCTTCTCATGTGTGCCATAGATTTGTTGTTGTATCCGTG
GATGTTTCGTTGATTGGCATGTCGATGAACATCCCAAAGGGAAATCGCAGAGTTGTTTGTGTTTTACTGCAAATAATAAA
CGTTCCTCCAG-TTTGTCAACTGCAAGTGACTGCTAATTTCTCCCGTGTATGTCCAAGCATAAATATGATCTTCTCTCTA
TTCATA--------------------------------------------------------------------------
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>chr4D_1756
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---ATATGCATGGTTTTCACTTTCAGTGTAATCTGACCGAAATTTCA---------CTAATTTCGG-ACATACTGAAATA
GCTATCTTTTTTTAGGTAGTGCGCACAAATTG-----------AAATTATTTTTTGAATTTTCAAGATATTTGGTTGGAT
CCCAATGAAGTTCAAGTGAAAAATTTCCTTTGTCCGAGACTACTACTTAGCATATGTG--TAGCAATACCTAGAAGAATA
ATAGTTTGTGTTTTCCCTCAAAATCGTTAACTTGGCTCATGTTTTGGGTTCAAATTATTTTGGAGCTCACATGACTCCAA
TCTATGACTCTCTTCATCGACGATGGTCAATGCTCTGGTCCTGTGCGACCTTAGCATGGCTACTTTTTGATTGTATATTA
TCACAAAGTTTGCCCTGCTTCGGTGAAGGAGGAGCGTTGATGATGACGTGCCTTAGTCTCACTTCAATACTCGTGGTCGT
CGCCAGATGGTCCATGAACCAGGTCCTATTTTTTTACATCCAGTGTTCCCTATGACTATCATGATTGAATATGAATAGAT
TGGAAGTTTCTCATGCAATTTT-TTTAAGAAGCACAATGAATAGATTGGAAGTTTCTCTTGCAA-AAAAATTTAAGGAGT
GCATTGAATAGATTGGAAAGAGGGTAATACAACAATAAACATGTTCAAGAAGCAC-AAACTAATGGCCATGTAGCTACCA
CTAATTCTCAACATGATCTTCGTTAACCTGCTCATTTTTTAGGGCTAAAAGTGGCTTTAAGACTCAATAATGTTCATGGA
TATTACTCCTATAAAGAATGCTAGAGTACCCGCCTCCTAGGGGCCTTCGAGGGTGAGCCTGCCTTCCGTTCGC-CCGTTC
TGCAAAGGCGTGCCACGGGAGCTTCTCAGGGGCTCTCCGCATCGTCCGATCAGTTCAAGCGC
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------
---------------SS---------------------------------------------------------------
-------------------------------------------------S------------------------------
--------S-----------S---------------S--------------------------S----------------
-----S-----------S-----SS--S----------------------------SS--SSS-----------------
--S----------SSSSSSSS--S------------------------------------S-------------------
-------------SSSS---------------------------------------------------------------
-------------------------------SSS---------------------------S------------------
-------S-------------------------------------------------------------SSSSSSS----
--S------SSSS--------------------------------------------------S----------------
--SS----S--S-----------------------------------------------S--------------------
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----------------------------------S---------------------------------------------
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---------S------------------------------------S---------------------------------
--SSSS---------------S------------------------------S----S----------------------
----------------------------------------------S---------------------------------
---------------------------S------------------------------------------S---------
---------S----------------------------------------------------------------------
---------S------------------S----------------------S----------------------------
------------------------------------------------------------------------S-------
------------------S----------------------------------------------------------S--
------S----S-----------------------------------------------SSSSS----------------
----------------S---------SS-S---S-------S------------S-S---------------------S-
-S---S---------S--------------------------S--------S--------------------------S-
---------SSS-------------------------------------------S------------S--------S--
---------------------------S----------S----S--------S-S-------------------------
---------S----------S------------------------------S---------------------------S
----------------------SS----------------------------------S---------SSSSSS---S--
S---S--------------S-----------------------S-S----S-----------
>forward_119
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-------------------TCTCAAGAACGCCCAAGACC-----------------------------------------
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>reverse_1123
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--CGCTACAATCCAGAGCACCA----------------------------------------------------------
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>forward_173
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-------------------------------------------------------------------------AGGGAAG
TGTATGTGCTGGC-------------------------------------------------------------------
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>reverse_1132
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-----------CCAGAGCACCACTACGTACG-------------------------------------------------
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>forward_174
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--------------------------------------------------------------------------GGGAAG
TGTATGTGCTGGCT------------------------------------------------------------------
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>reverse_1133
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------------CAGAGCACCACTACGTACGT------------------------------------------------
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>forward_820
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CCCTCTGCAGAAAGCCAGAA------------------------------------------------------------
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>reverse_2664
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-----------------------AAGTACCCGCCTCCTAGGG--------------------------------------
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