Multiple sequence alignment - TraesCS4A01G249200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G249200 chr4A 100.000 4195 0 0 1 4195 560320518 560316324 0.000000e+00 7747
1 TraesCS4A01G249200 chr4A 98.592 142 2 0 4054 4195 572704514 572704655 6.960000e-63 252
2 TraesCS4A01G249200 chr4B 86.265 2024 143 68 825 2786 58249241 58251191 0.000000e+00 2073
3 TraesCS4A01G249200 chr4B 89.713 593 43 11 3003 3588 58251236 58251817 0.000000e+00 741
4 TraesCS4A01G249200 chr4B 89.083 458 32 9 3589 4031 58251911 58252365 1.700000e-153 553
5 TraesCS4A01G249200 chr4B 85.526 380 32 11 3 374 58248342 58248706 3.960000e-100 375
6 TraesCS4A01G249200 chr4B 84.637 358 27 15 475 813 58248708 58249056 8.690000e-87 331
7 TraesCS4A01G249200 chr4D 87.209 1032 55 34 957 1935 39979699 39980706 0.000000e+00 1103
8 TraesCS4A01G249200 chr4D 88.150 692 47 15 2913 3588 39981448 39982120 0.000000e+00 791
9 TraesCS4A01G249200 chr4D 84.939 737 56 27 66 772 39978662 39979373 0.000000e+00 695
10 TraesCS4A01G249200 chr4D 83.780 709 63 28 2117 2795 39980756 39981442 3.560000e-175 625
11 TraesCS4A01G249200 chr4D 88.400 500 23 12 3589 4055 39982214 39982711 1.690000e-158 569
12 TraesCS4A01G249200 chr4D 98.592 142 2 0 4054 4195 16666599 16666740 6.960000e-63 252
13 TraesCS4A01G249200 chr3D 81.182 457 59 14 3593 4031 551245389 551245836 4.020000e-90 342
14 TraesCS4A01G249200 chr5D 99.296 142 1 0 4054 4195 435791438 435791579 1.500000e-64 257
15 TraesCS4A01G249200 chr5D 99.296 142 1 0 4054 4195 537399564 537399705 1.500000e-64 257
16 TraesCS4A01G249200 chr1D 99.296 142 1 0 4054 4195 366677273 366677414 1.500000e-64 257
17 TraesCS4A01G249200 chr7D 98.601 143 2 0 4053 4195 579632798 579632656 1.940000e-63 254
18 TraesCS4A01G249200 chrUn 98.592 142 2 0 4054 4195 61009607 61009466 6.960000e-63 252
19 TraesCS4A01G249200 chr2D 98.592 142 2 0 4054 4195 5377830 5377971 6.960000e-63 252
20 TraesCS4A01G249200 chr1A 98.592 142 2 0 4054 4195 298372706 298372847 6.960000e-63 252


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G249200 chr4A 560316324 560320518 4194 True 7747.0 7747 100.0000 1 4195 1 chr4A.!!$R1 4194
1 TraesCS4A01G249200 chr4B 58248342 58252365 4023 False 814.6 2073 87.0448 3 4031 5 chr4B.!!$F1 4028
2 TraesCS4A01G249200 chr4D 39978662 39982711 4049 False 756.6 1103 86.4956 66 4055 5 chr4D.!!$F2 3989

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 1177 0.108329 GCAACGGCAGTAGAAGGCTA 60.108 55.0 0.00 0.0 40.72 3.93 F
1004 1267 0.035152 ACAGCAATCTCGCCAATGGA 60.035 50.0 2.05 0.0 0.00 3.41 F
1816 2149 0.040058 TGCCTGTGCTGGATTTGGAT 59.960 50.0 0.00 0.0 38.71 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2044 2383 0.396435 TCAGGGCGATGTGTCAAAGT 59.604 50.000 0.0 0.0 0.00 2.66 R
2183 2526 1.001974 CGGACTGTGTCATGGAAGGAA 59.998 52.381 0.0 0.0 33.68 3.36 R
3641 4143 0.322456 TCTCCAGCCCGACCATTTTG 60.322 55.000 0.0 0.0 0.00 2.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.126858 CGCCACTACTACGGTTACACTTA 59.873 47.826 0.00 0.00 0.00 2.24
26 27 5.048782 CCACTACTACGGTTACACTTACACA 60.049 44.000 0.00 0.00 0.00 3.72
30 31 2.837498 ACGGTTACACTTACACAACCC 58.163 47.619 0.00 0.00 37.70 4.11
31 32 2.170187 ACGGTTACACTTACACAACCCA 59.830 45.455 0.00 0.00 37.70 4.51
41 42 0.603707 ACACAACCCAGCGTCATCAG 60.604 55.000 0.00 0.00 0.00 2.90
54 59 5.755375 CAGCGTCATCAGTCCAATTATTAGT 59.245 40.000 0.00 0.00 0.00 2.24
76 81 2.011349 CGTATACGCGAGCAGGCAG 61.011 63.158 15.93 0.00 0.00 4.85
119 125 7.038154 TCGACCAAAGAAAAGAAATCATGTT 57.962 32.000 0.00 0.00 0.00 2.71
132 142 5.812642 AGAAATCATGTTCTGTACACCGATC 59.187 40.000 0.00 0.00 40.19 3.69
164 174 1.010797 CGGCGGCGAAATGAATGAG 60.011 57.895 29.19 0.00 0.00 2.90
173 183 6.027131 CGGCGAAATGAATGAGTATGAAAAA 58.973 36.000 0.00 0.00 0.00 1.94
177 187 8.951969 GCGAAATGAATGAGTATGAAAAATCTC 58.048 33.333 0.00 0.00 0.00 2.75
195 205 2.141517 CTCGGCTTCATGATCCACATC 58.858 52.381 13.10 0.00 37.07 3.06
196 206 1.202687 TCGGCTTCATGATCCACATCC 60.203 52.381 13.10 0.00 37.07 3.51
198 208 1.952296 GGCTTCATGATCCACATCCAC 59.048 52.381 0.00 0.00 37.07 4.02
199 209 2.646930 GCTTCATGATCCACATCCACA 58.353 47.619 0.00 0.00 37.07 4.17
200 210 3.220110 GCTTCATGATCCACATCCACAT 58.780 45.455 0.00 0.00 37.07 3.21
202 212 4.457466 CTTCATGATCCACATCCACATGA 58.543 43.478 0.00 0.00 43.19 3.07
205 215 4.825085 TCATGATCCACATCCACATGAATG 59.175 41.667 0.00 2.83 42.38 2.67
206 216 4.506937 TGATCCACATCCACATGAATGA 57.493 40.909 0.00 0.00 33.72 2.57
207 217 4.857679 TGATCCACATCCACATGAATGAA 58.142 39.130 0.00 0.00 33.72 2.57
210 220 7.061688 TGATCCACATCCACATGAATGAAATA 58.938 34.615 0.00 0.00 33.72 1.40
211 221 6.698008 TCCACATCCACATGAATGAAATAC 57.302 37.500 0.00 0.00 33.72 1.89
212 222 6.425735 TCCACATCCACATGAATGAAATACT 58.574 36.000 0.00 0.00 33.72 2.12
214 224 6.544931 CCACATCCACATGAATGAAATACTCT 59.455 38.462 0.00 0.00 33.72 3.24
215 225 7.716560 CCACATCCACATGAATGAAATACTCTA 59.283 37.037 0.00 0.00 33.72 2.43
216 226 8.554528 CACATCCACATGAATGAAATACTCTAC 58.445 37.037 0.00 0.00 33.72 2.59
217 227 8.489489 ACATCCACATGAATGAAATACTCTACT 58.511 33.333 0.00 0.00 33.72 2.57
218 228 8.771766 CATCCACATGAATGAAATACTCTACTG 58.228 37.037 0.00 0.00 30.57 2.74
219 229 6.763135 TCCACATGAATGAAATACTCTACTGC 59.237 38.462 0.00 0.00 0.00 4.40
220 230 6.017605 CCACATGAATGAAATACTCTACTGCC 60.018 42.308 0.00 0.00 0.00 4.85
221 231 6.017605 CACATGAATGAAATACTCTACTGCCC 60.018 42.308 0.00 0.00 0.00 5.36
222 232 5.692115 TGAATGAAATACTCTACTGCCCA 57.308 39.130 0.00 0.00 0.00 5.36
223 233 5.674525 TGAATGAAATACTCTACTGCCCAG 58.325 41.667 0.00 0.00 0.00 4.45
224 234 5.189736 TGAATGAAATACTCTACTGCCCAGT 59.810 40.000 6.17 6.17 45.02 4.00
225 235 4.471904 TGAAATACTCTACTGCCCAGTG 57.528 45.455 11.02 2.11 42.52 3.66
270 292 3.140325 TCCTGCCTGGTAAAGAAACAG 57.860 47.619 0.00 0.00 37.07 3.16
286 308 2.203938 AGGGAAGAAGGGGCGTCA 60.204 61.111 0.00 0.00 0.00 4.35
323 345 2.801679 GACCGATCAACAAACCAACGTA 59.198 45.455 0.00 0.00 0.00 3.57
334 357 6.079424 ACAAACCAACGTACATTTATGCTT 57.921 33.333 0.00 0.00 0.00 3.91
381 404 8.346300 AGTCAAACTGATGAGATATACTGTACG 58.654 37.037 0.00 0.00 0.00 3.67
420 443 2.031465 TTTCACGGGAAGCCGTCC 59.969 61.111 0.00 0.00 45.00 4.79
441 464 0.108567 GGTCAGAGGTCTTCTTCCGC 60.109 60.000 0.00 0.00 32.41 5.54
485 513 7.283354 TGACGATAGAGTGTAATTCAGAGTGAT 59.717 37.037 0.00 0.00 41.38 3.06
498 531 3.490759 GTGATGGGCTGACGCGTG 61.491 66.667 20.70 3.71 36.88 5.34
515 548 0.790814 GTGCGCAGTGGAGTTAGAAC 59.209 55.000 12.22 0.00 0.00 3.01
551 584 4.623002 GGAGGAGTAAAGAATCGTCATCC 58.377 47.826 0.00 0.00 33.14 3.51
552 585 4.501743 GGAGGAGTAAAGAATCGTCATCCC 60.502 50.000 0.00 0.00 33.02 3.85
553 586 4.030913 AGGAGTAAAGAATCGTCATCCCA 58.969 43.478 0.00 0.00 0.00 4.37
554 587 4.656112 AGGAGTAAAGAATCGTCATCCCAT 59.344 41.667 0.00 0.00 0.00 4.00
555 588 4.991687 GGAGTAAAGAATCGTCATCCCATC 59.008 45.833 0.00 0.00 0.00 3.51
556 589 4.962155 AGTAAAGAATCGTCATCCCATCC 58.038 43.478 0.00 0.00 0.00 3.51
557 590 2.938956 AAGAATCGTCATCCCATCCC 57.061 50.000 0.00 0.00 0.00 3.85
587 620 1.039785 GGAGCTTCCATCTTTGGCCC 61.040 60.000 0.00 0.00 43.29 5.80
588 621 1.379044 AGCTTCCATCTTTGGCCCG 60.379 57.895 0.00 0.00 43.29 6.13
589 622 3.068729 GCTTCCATCTTTGGCCCGC 62.069 63.158 0.00 0.00 43.29 6.13
612 645 4.410400 CGCCACCACCTCCTTCCC 62.410 72.222 0.00 0.00 0.00 3.97
641 675 5.827568 AAAAGCAACGCTGTTGATAATTG 57.172 34.783 20.50 0.00 39.62 2.32
642 676 2.867429 AGCAACGCTGTTGATAATTGC 58.133 42.857 20.50 7.93 42.11 3.56
643 677 2.489329 AGCAACGCTGTTGATAATTGCT 59.511 40.909 20.50 3.53 45.89 3.91
644 678 3.244976 GCAACGCTGTTGATAATTGCTT 58.755 40.909 20.50 0.00 39.42 3.91
645 679 4.411327 GCAACGCTGTTGATAATTGCTTA 58.589 39.130 20.50 0.00 39.42 3.09
646 680 4.262976 GCAACGCTGTTGATAATTGCTTAC 59.737 41.667 20.50 0.67 39.42 2.34
648 682 3.930229 ACGCTGTTGATAATTGCTTACGA 59.070 39.130 0.00 0.00 0.00 3.43
649 683 4.032900 ACGCTGTTGATAATTGCTTACGAG 59.967 41.667 0.00 0.00 0.00 4.18
651 685 5.231357 CGCTGTTGATAATTGCTTACGAGTA 59.769 40.000 0.00 0.00 0.00 2.59
663 709 5.657474 TGCTTACGAGTATAAACAAGAGGG 58.343 41.667 0.00 0.00 0.00 4.30
675 721 9.674068 GTATAAACAAGAGGGAGAAAGAAAGAT 57.326 33.333 0.00 0.00 0.00 2.40
688 734 0.179153 GAAAGATGCGCAAAGGCTCC 60.179 55.000 17.11 2.26 38.10 4.70
739 785 7.862675 AGTTAAAGAAATGGCAGTAGGTCTAT 58.137 34.615 0.00 0.00 0.00 1.98
740 786 7.988028 AGTTAAAGAAATGGCAGTAGGTCTATC 59.012 37.037 0.00 0.00 0.00 2.08
744 790 4.630644 AATGGCAGTAGGTCTATCCATG 57.369 45.455 0.00 0.00 38.12 3.66
755 801 5.579047 AGGTCTATCCATGTAGATCCTCTG 58.421 45.833 1.05 0.00 39.02 3.35
756 802 4.159506 GGTCTATCCATGTAGATCCTCTGC 59.840 50.000 0.00 0.00 33.58 4.26
768 814 2.262915 CTCTGCGCTCCGGAAACT 59.737 61.111 9.73 0.00 0.00 2.66
772 818 1.066605 TCTGCGCTCCGGAAACTATAC 59.933 52.381 9.73 0.00 0.00 1.47
773 819 1.067212 CTGCGCTCCGGAAACTATACT 59.933 52.381 9.73 0.00 0.00 2.12
811 861 6.339587 ACAACTGTAGAGGAAGAAGAGAAG 57.660 41.667 0.00 0.00 0.00 2.85
812 862 6.071984 ACAACTGTAGAGGAAGAAGAGAAGA 58.928 40.000 0.00 0.00 0.00 2.87
813 863 6.208599 ACAACTGTAGAGGAAGAAGAGAAGAG 59.791 42.308 0.00 0.00 0.00 2.85
816 866 5.505780 TGTAGAGGAAGAAGAGAAGAGAGG 58.494 45.833 0.00 0.00 0.00 3.69
817 867 3.981212 AGAGGAAGAAGAGAAGAGAGGG 58.019 50.000 0.00 0.00 0.00 4.30
819 869 2.385417 AGGAAGAAGAGAAGAGAGGGGT 59.615 50.000 0.00 0.00 0.00 4.95
822 872 3.680777 AGAAGAGAAGAGAGGGGTAGG 57.319 52.381 0.00 0.00 0.00 3.18
823 873 2.036387 GAAGAGAAGAGAGGGGTAGGC 58.964 57.143 0.00 0.00 0.00 3.93
837 1082 1.379977 TAGGCAGGCACGCTAGACT 60.380 57.895 0.00 0.00 0.00 3.24
866 1115 6.019479 GTGACAGTATAAAAATGCTCTCCTCG 60.019 42.308 0.00 0.00 0.00 4.63
874 1123 2.012824 ATGCTCTCCTCGCCCTCCTA 62.013 60.000 0.00 0.00 0.00 2.94
903 1166 3.594775 CAACAGGCAGCAACGGCA 61.595 61.111 0.00 0.00 44.61 5.69
904 1167 3.289834 AACAGGCAGCAACGGCAG 61.290 61.111 0.00 0.00 44.61 4.85
905 1168 4.569180 ACAGGCAGCAACGGCAGT 62.569 61.111 0.00 0.00 44.61 4.40
906 1169 2.358615 CAGGCAGCAACGGCAGTA 60.359 61.111 0.00 0.00 44.61 2.74
907 1170 2.046892 AGGCAGCAACGGCAGTAG 60.047 61.111 0.00 0.00 44.61 2.57
908 1171 2.047274 GGCAGCAACGGCAGTAGA 60.047 61.111 0.00 0.00 44.61 2.59
909 1172 1.671054 GGCAGCAACGGCAGTAGAA 60.671 57.895 0.00 0.00 44.61 2.10
910 1173 1.639298 GGCAGCAACGGCAGTAGAAG 61.639 60.000 0.00 0.00 44.61 2.85
911 1174 1.639298 GCAGCAACGGCAGTAGAAGG 61.639 60.000 0.00 0.00 44.61 3.46
912 1175 1.376037 AGCAACGGCAGTAGAAGGC 60.376 57.895 0.00 0.00 44.61 4.35
913 1176 1.376037 GCAACGGCAGTAGAAGGCT 60.376 57.895 0.00 0.00 40.72 4.58
914 1177 0.108329 GCAACGGCAGTAGAAGGCTA 60.108 55.000 0.00 0.00 40.72 3.93
915 1178 1.927895 CAACGGCAGTAGAAGGCTAG 58.072 55.000 0.00 0.00 0.00 3.42
924 1187 2.693074 AGTAGAAGGCTAGAAGCAGAGC 59.307 50.000 0.00 0.00 44.75 4.09
1000 1263 1.536766 CAAGAACAGCAATCTCGCCAA 59.463 47.619 0.00 0.00 0.00 4.52
1001 1264 2.119801 AGAACAGCAATCTCGCCAAT 57.880 45.000 0.00 0.00 0.00 3.16
1002 1265 1.741706 AGAACAGCAATCTCGCCAATG 59.258 47.619 0.00 0.00 0.00 2.82
1003 1266 0.813184 AACAGCAATCTCGCCAATGG 59.187 50.000 0.00 0.00 0.00 3.16
1004 1267 0.035152 ACAGCAATCTCGCCAATGGA 60.035 50.000 2.05 0.00 0.00 3.41
1005 1268 1.315690 CAGCAATCTCGCCAATGGAT 58.684 50.000 2.05 0.00 0.00 3.41
1011 1274 3.623906 ATCTCGCCAATGGATATGGAG 57.376 47.619 2.05 1.02 40.56 3.86
1076 1339 3.069318 GTCCGTCCGCCTCTCCTT 61.069 66.667 0.00 0.00 0.00 3.36
1078 1341 2.184579 CCGTCCGCCTCTCCTTTC 59.815 66.667 0.00 0.00 0.00 2.62
1079 1342 2.202623 CGTCCGCCTCTCCTTTCG 60.203 66.667 0.00 0.00 0.00 3.46
1080 1343 2.509561 GTCCGCCTCTCCTTTCGC 60.510 66.667 0.00 0.00 0.00 4.70
1081 1344 3.771160 TCCGCCTCTCCTTTCGCC 61.771 66.667 0.00 0.00 0.00 5.54
1082 1345 4.840005 CCGCCTCTCCTTTCGCCC 62.840 72.222 0.00 0.00 0.00 6.13
1102 1365 3.130693 CCCCTGCTACTTGTCTGTACTAC 59.869 52.174 0.00 0.00 0.00 2.73
1105 1376 5.828859 CCCTGCTACTTGTCTGTACTACTAT 59.171 44.000 0.00 0.00 0.00 2.12
1161 1440 1.021390 GTCGCAGGTGCAAGCACTAT 61.021 55.000 22.79 10.72 45.52 2.12
1258 1537 0.533491 CTCTGCTCTGCTCTGCTCTT 59.467 55.000 0.00 0.00 0.00 2.85
1270 1549 2.689983 CTCTGCTCTTCCTCTCTTCTCC 59.310 54.545 0.00 0.00 0.00 3.71
1300 1579 0.397941 CTCTGGTCTGCTTGGGTTGA 59.602 55.000 0.00 0.00 0.00 3.18
1303 1582 0.770499 TGGTCTGCTTGGGTTGATGA 59.230 50.000 0.00 0.00 0.00 2.92
1305 1584 1.747355 GGTCTGCTTGGGTTGATGATG 59.253 52.381 0.00 0.00 0.00 3.07
1339 1618 7.386851 TCTTTCGTTCTTTGGATAATCTCTGT 58.613 34.615 0.00 0.00 0.00 3.41
1344 1623 7.545965 TCGTTCTTTGGATAATCTCTGTCTTTC 59.454 37.037 0.00 0.00 0.00 2.62
1347 1626 7.689299 TCTTTGGATAATCTCTGTCTTTCCAA 58.311 34.615 0.00 0.00 39.36 3.53
1357 1636 3.817084 TCTGTCTTTCCAACTGCATCTTG 59.183 43.478 0.00 0.00 0.00 3.02
1370 1653 4.699257 ACTGCATCTTGTTCTTCTTGGATC 59.301 41.667 0.00 0.00 0.00 3.36
1455 1742 3.586618 ACTGCTTCCTCCTCTTCATTTCT 59.413 43.478 0.00 0.00 0.00 2.52
1456 1743 4.190772 CTGCTTCCTCCTCTTCATTTCTC 58.809 47.826 0.00 0.00 0.00 2.87
1457 1744 3.584406 TGCTTCCTCCTCTTCATTTCTCA 59.416 43.478 0.00 0.00 0.00 3.27
1458 1745 4.226846 TGCTTCCTCCTCTTCATTTCTCAT 59.773 41.667 0.00 0.00 0.00 2.90
1459 1746 5.426509 TGCTTCCTCCTCTTCATTTCTCATA 59.573 40.000 0.00 0.00 0.00 2.15
1460 1747 5.757808 GCTTCCTCCTCTTCATTTCTCATAC 59.242 44.000 0.00 0.00 0.00 2.39
1461 1748 6.407979 GCTTCCTCCTCTTCATTTCTCATACT 60.408 42.308 0.00 0.00 0.00 2.12
1462 1749 7.201956 GCTTCCTCCTCTTCATTTCTCATACTA 60.202 40.741 0.00 0.00 0.00 1.82
1463 1750 8.789767 TTCCTCCTCTTCATTTCTCATACTAT 57.210 34.615 0.00 0.00 0.00 2.12
1464 1751 8.415950 TCCTCCTCTTCATTTCTCATACTATC 57.584 38.462 0.00 0.00 0.00 2.08
1465 1752 8.231007 TCCTCCTCTTCATTTCTCATACTATCT 58.769 37.037 0.00 0.00 0.00 1.98
1466 1753 9.527157 CCTCCTCTTCATTTCTCATACTATCTA 57.473 37.037 0.00 0.00 0.00 1.98
1487 1774 1.202099 TATGTTCCCAGTGCCCGGAA 61.202 55.000 0.73 0.00 35.76 4.30
1500 1787 2.295909 TGCCCGGAAATCTTGTTTCTTG 59.704 45.455 0.73 0.00 0.00 3.02
1512 1800 5.496556 TCTTGTTTCTTGACTTCACCTTCA 58.503 37.500 0.00 0.00 0.00 3.02
1513 1801 5.586243 TCTTGTTTCTTGACTTCACCTTCAG 59.414 40.000 0.00 0.00 0.00 3.02
1544 1839 6.814146 TCGCTAACAAAACAACATTTCCTTTT 59.186 30.769 0.00 0.00 0.00 2.27
1608 1919 1.595382 CATCTGACGGCGATTCCCC 60.595 63.158 16.62 0.00 0.00 4.81
1609 1920 2.063979 ATCTGACGGCGATTCCCCA 61.064 57.895 16.62 0.32 0.00 4.96
1638 1953 6.591834 TCTTCTTTCTTGTGCTGCTAATAGTC 59.408 38.462 0.00 0.00 0.00 2.59
1670 1985 7.015877 TCAGAGTTTGGGTATAACACTAACAGT 59.984 37.037 8.83 0.00 39.20 3.55
1674 1989 7.229907 AGTTTGGGTATAACACTAACAGTTTGG 59.770 37.037 8.83 0.00 39.20 3.28
1675 1990 5.005094 TGGGTATAACACTAACAGTTTGGC 58.995 41.667 0.00 0.00 0.00 4.52
1676 1991 5.005094 GGGTATAACACTAACAGTTTGGCA 58.995 41.667 0.00 0.00 0.00 4.92
1677 1992 5.106436 GGGTATAACACTAACAGTTTGGCAC 60.106 44.000 0.00 0.00 0.00 5.01
1678 1993 5.704053 GGTATAACACTAACAGTTTGGCACT 59.296 40.000 0.00 0.00 35.35 4.40
1702 2017 1.227060 TGATCATCAGGTCGCGCAG 60.227 57.895 8.75 0.00 0.00 5.18
1780 2095 2.913777 TCGACGACGATGTGAGAATT 57.086 45.000 5.75 0.00 43.81 2.17
1781 2096 2.515912 TCGACGACGATGTGAGAATTG 58.484 47.619 5.75 0.00 43.81 2.32
1782 2097 2.160813 TCGACGACGATGTGAGAATTGA 59.839 45.455 5.75 0.00 43.81 2.57
1783 2098 2.527887 CGACGACGATGTGAGAATTGAG 59.472 50.000 0.00 0.00 42.66 3.02
1784 2099 3.727970 CGACGACGATGTGAGAATTGAGA 60.728 47.826 0.00 0.00 42.66 3.27
1798 2131 1.279496 TTGAGATCCCTGTCCCTGTG 58.721 55.000 0.00 0.00 0.00 3.66
1814 2147 1.180456 TGTGCCTGTGCTGGATTTGG 61.180 55.000 0.00 0.00 38.71 3.28
1815 2148 0.895100 GTGCCTGTGCTGGATTTGGA 60.895 55.000 0.00 0.00 38.71 3.53
1816 2149 0.040058 TGCCTGTGCTGGATTTGGAT 59.960 50.000 0.00 0.00 38.71 3.41
1817 2150 1.188863 GCCTGTGCTGGATTTGGATT 58.811 50.000 0.00 0.00 33.53 3.01
1818 2151 1.551883 GCCTGTGCTGGATTTGGATTT 59.448 47.619 0.00 0.00 33.53 2.17
1819 2152 2.675889 GCCTGTGCTGGATTTGGATTTG 60.676 50.000 0.00 0.00 33.53 2.32
1920 2253 3.275338 GCGGCATCTGCAGGTAGC 61.275 66.667 15.13 14.93 44.36 3.58
1936 2273 6.126409 GCAGGTAGCTACTCCTATCATATCT 58.874 44.000 22.74 4.61 41.15 1.98
1939 2276 7.284489 CAGGTAGCTACTCCTATCATATCTTCC 59.716 44.444 22.74 0.59 32.26 3.46
1940 2277 6.261381 GGTAGCTACTCCTATCATATCTTCCG 59.739 46.154 22.74 0.00 0.00 4.30
1955 2292 7.933577 TCATATCTTCCGAACTGATGCTTAATT 59.066 33.333 0.00 0.00 0.00 1.40
1957 2294 5.487433 TCTTCCGAACTGATGCTTAATTGA 58.513 37.500 0.00 0.00 0.00 2.57
1966 2303 6.339730 ACTGATGCTTAATTGAGAGACTGAG 58.660 40.000 0.58 0.00 0.00 3.35
1971 2308 4.566360 GCTTAATTGAGAGACTGAGAGCAC 59.434 45.833 0.58 0.00 0.00 4.40
1973 2310 4.822685 AATTGAGAGACTGAGAGCACAT 57.177 40.909 0.00 0.00 0.00 3.21
1974 2311 3.589495 TTGAGAGACTGAGAGCACATG 57.411 47.619 0.00 0.00 0.00 3.21
1996 2333 3.333029 AACCAGGCCAAATTATGCAAC 57.667 42.857 5.01 0.00 0.00 4.17
2000 2337 3.623960 CCAGGCCAAATTATGCAACATTG 59.376 43.478 5.01 0.00 0.00 2.82
2021 2360 9.248291 ACATTGTACAAAATTCACAAATGAGTC 57.752 29.630 13.23 0.00 35.91 3.36
2029 2368 9.090692 CAAAATTCACAAATGAGTCTTCACTTT 57.909 29.630 0.00 0.00 35.83 2.66
2039 2378 6.609237 TGAGTCTTCACTTTCATTCAGTTG 57.391 37.500 0.00 0.00 30.63 3.16
2041 2380 6.599244 TGAGTCTTCACTTTCATTCAGTTGTT 59.401 34.615 0.00 0.00 30.63 2.83
2042 2381 6.789262 AGTCTTCACTTTCATTCAGTTGTTG 58.211 36.000 0.00 0.00 0.00 3.33
2044 2383 7.552687 AGTCTTCACTTTCATTCAGTTGTTGTA 59.447 33.333 0.00 0.00 0.00 2.41
2045 2384 7.640240 GTCTTCACTTTCATTCAGTTGTTGTAC 59.360 37.037 0.00 0.00 0.00 2.90
2073 2412 2.224523 ACATCGCCCTGAAAGTTCAAGA 60.225 45.455 0.00 0.00 36.64 3.02
2110 2449 5.808042 ACTGAAACTGTGATACATGCATC 57.192 39.130 0.00 0.00 0.00 3.91
2112 2451 5.942236 ACTGAAACTGTGATACATGCATCTT 59.058 36.000 7.44 0.00 0.00 2.40
2146 2489 2.091885 TGGAGGCAAGGACAACTTCTTT 60.092 45.455 0.00 0.00 37.29 2.52
2180 2523 1.959042 CGGTAAGCAAGCATGATCCT 58.041 50.000 0.00 0.00 0.00 3.24
2182 2525 3.466836 CGGTAAGCAAGCATGATCCTTA 58.533 45.455 0.00 0.00 0.00 2.69
2183 2526 4.067896 CGGTAAGCAAGCATGATCCTTAT 58.932 43.478 0.00 0.00 0.00 1.73
2189 2532 4.826183 AGCAAGCATGATCCTTATTCCTTC 59.174 41.667 0.00 0.00 0.00 3.46
2203 2546 0.608130 TCCTTCCATGACACAGTCCG 59.392 55.000 0.00 0.00 0.00 4.79
2207 2550 2.672961 TCCATGACACAGTCCGAATC 57.327 50.000 0.00 0.00 0.00 2.52
2208 2551 1.899142 TCCATGACACAGTCCGAATCA 59.101 47.619 0.00 0.00 0.00 2.57
2210 2553 2.354103 CCATGACACAGTCCGAATCACT 60.354 50.000 0.00 0.00 0.00 3.41
2211 2554 2.724977 TGACACAGTCCGAATCACTC 57.275 50.000 0.00 0.00 0.00 3.51
2212 2555 1.272490 TGACACAGTCCGAATCACTCC 59.728 52.381 0.00 0.00 0.00 3.85
2215 2559 1.135139 CACAGTCCGAATCACTCCGAT 59.865 52.381 0.00 0.00 35.12 4.18
2232 2576 1.933853 CGATTCACTCCGATTCCAACC 59.066 52.381 0.00 0.00 0.00 3.77
2252 2596 6.258727 CCAACCATATATGTATCTCAATCCGC 59.741 42.308 11.73 0.00 0.00 5.54
2258 2602 0.963962 GTATCTCAATCCGCCGGGTA 59.036 55.000 1.90 0.00 33.83 3.69
2469 2813 1.669115 CGCCCATGCCTTCCTATCG 60.669 63.158 0.00 0.00 0.00 2.92
2516 2879 4.276678 TGTGATCTTGTTCTTCTTGCTTGG 59.723 41.667 0.00 0.00 0.00 3.61
2517 2880 4.516698 GTGATCTTGTTCTTCTTGCTTGGA 59.483 41.667 0.00 0.00 0.00 3.53
2518 2881 5.182760 GTGATCTTGTTCTTCTTGCTTGGAT 59.817 40.000 0.00 0.00 0.00 3.41
2519 2882 6.372659 GTGATCTTGTTCTTCTTGCTTGGATA 59.627 38.462 0.00 0.00 0.00 2.59
2546 2909 4.395542 AGATAACGCTATCCTCCACGTATC 59.604 45.833 2.21 0.00 37.87 2.24
2601 2964 5.653769 TCCATCTTTGACATGGAGAAATTCC 59.346 40.000 0.00 0.00 44.17 3.01
2646 3009 8.414778 AGGTAAGTATTTTCTCAGTAAGATCCG 58.585 37.037 0.00 0.00 32.82 4.18
2647 3010 8.196103 GGTAAGTATTTTCTCAGTAAGATCCGT 58.804 37.037 0.00 0.00 32.82 4.69
2653 3016 4.902443 TCTCAGTAAGATCCGTAGCAAG 57.098 45.455 0.00 0.00 0.00 4.01
2654 3017 3.066900 TCTCAGTAAGATCCGTAGCAAGC 59.933 47.826 0.00 0.00 0.00 4.01
2655 3018 2.758423 TCAGTAAGATCCGTAGCAAGCA 59.242 45.455 0.00 0.00 0.00 3.91
2656 3019 3.384789 TCAGTAAGATCCGTAGCAAGCAT 59.615 43.478 0.00 0.00 0.00 3.79
2657 3020 3.492383 CAGTAAGATCCGTAGCAAGCATG 59.508 47.826 0.00 0.00 0.00 4.06
2658 3021 2.988010 AAGATCCGTAGCAAGCATGA 57.012 45.000 0.00 0.00 0.00 3.07
2659 3022 3.482156 AAGATCCGTAGCAAGCATGAT 57.518 42.857 0.00 0.00 0.00 2.45
2660 3023 3.482156 AGATCCGTAGCAAGCATGATT 57.518 42.857 0.00 0.00 0.00 2.57
2662 3025 4.202441 AGATCCGTAGCAAGCATGATTTT 58.798 39.130 0.00 0.00 0.00 1.82
2663 3026 4.274459 AGATCCGTAGCAAGCATGATTTTC 59.726 41.667 0.00 0.00 0.00 2.29
2664 3027 3.342719 TCCGTAGCAAGCATGATTTTCA 58.657 40.909 0.00 0.00 0.00 2.69
2665 3028 3.947196 TCCGTAGCAAGCATGATTTTCAT 59.053 39.130 0.00 0.00 37.65 2.57
2666 3029 4.035558 TCCGTAGCAAGCATGATTTTCATC 59.964 41.667 0.00 0.00 34.28 2.92
2667 3030 4.036027 CCGTAGCAAGCATGATTTTCATCT 59.964 41.667 0.00 0.00 34.28 2.90
2669 3032 5.454554 CGTAGCAAGCATGATTTTCATCTTG 59.545 40.000 16.65 16.65 40.64 3.02
2671 3034 4.222145 AGCAAGCATGATTTTCATCTTGGT 59.778 37.500 18.13 18.13 43.56 3.67
2673 3036 5.063060 GCAAGCATGATTTTCATCTTGGTTC 59.937 40.000 19.49 5.38 45.33 3.62
2674 3037 5.334724 AGCATGATTTTCATCTTGGTTCC 57.665 39.130 0.00 0.00 40.57 3.62
2772 3153 1.774254 ACACATGGGAAAGGTCAGTGA 59.226 47.619 0.00 0.00 0.00 3.41
2795 3176 7.169645 GTGACACATTTGCAACTCACATATTTT 59.830 33.333 0.00 0.00 29.50 1.82
2798 3179 7.495279 ACACATTTGCAACTCACATATTTTTGT 59.505 29.630 0.00 0.00 0.00 2.83
2799 3180 8.976471 CACATTTGCAACTCACATATTTTTGTA 58.024 29.630 0.00 0.00 0.00 2.41
2800 3181 9.195411 ACATTTGCAACTCACATATTTTTGTAG 57.805 29.630 0.00 0.00 0.00 2.74
2801 3182 7.636259 TTTGCAACTCACATATTTTTGTAGC 57.364 32.000 0.00 0.00 0.00 3.58
2802 3183 5.708948 TGCAACTCACATATTTTTGTAGCC 58.291 37.500 0.00 0.00 0.00 3.93
2803 3184 5.102313 GCAACTCACATATTTTTGTAGCCC 58.898 41.667 0.00 0.00 0.00 5.19
2804 3185 5.105756 GCAACTCACATATTTTTGTAGCCCT 60.106 40.000 0.00 0.00 0.00 5.19
2805 3186 6.555315 CAACTCACATATTTTTGTAGCCCTC 58.445 40.000 0.00 0.00 0.00 4.30
2806 3187 5.815581 ACTCACATATTTTTGTAGCCCTCA 58.184 37.500 0.00 0.00 0.00 3.86
2807 3188 6.245408 ACTCACATATTTTTGTAGCCCTCAA 58.755 36.000 0.00 0.00 0.00 3.02
2808 3189 6.719370 ACTCACATATTTTTGTAGCCCTCAAA 59.281 34.615 0.00 0.00 33.76 2.69
2809 3190 7.397192 ACTCACATATTTTTGTAGCCCTCAAAT 59.603 33.333 0.00 0.00 35.25 2.32
2810 3191 8.815565 TCACATATTTTTGTAGCCCTCAAATA 57.184 30.769 0.00 0.00 35.25 1.40
2811 3192 9.249053 TCACATATTTTTGTAGCCCTCAAATAA 57.751 29.630 0.00 0.00 35.25 1.40
2812 3193 9.868277 CACATATTTTTGTAGCCCTCAAATAAA 57.132 29.630 0.00 0.00 35.25 1.40
2813 3194 9.869757 ACATATTTTTGTAGCCCTCAAATAAAC 57.130 29.630 0.00 0.00 35.25 2.01
2814 3195 9.868277 CATATTTTTGTAGCCCTCAAATAAACA 57.132 29.630 0.00 0.00 35.25 2.83
2816 3197 8.776376 ATTTTTGTAGCCCTCAAATAAACATG 57.224 30.769 0.00 0.00 35.25 3.21
2817 3198 6.909550 TTTGTAGCCCTCAAATAAACATGT 57.090 33.333 0.00 0.00 31.17 3.21
2818 3199 6.909550 TTGTAGCCCTCAAATAAACATGTT 57.090 33.333 4.92 4.92 0.00 2.71
2819 3200 6.909550 TGTAGCCCTCAAATAAACATGTTT 57.090 33.333 25.99 25.99 36.63 2.83
2820 3201 6.919721 TGTAGCCCTCAAATAAACATGTTTC 58.080 36.000 26.46 9.59 34.23 2.78
2821 3202 6.719370 TGTAGCCCTCAAATAAACATGTTTCT 59.281 34.615 26.46 14.94 34.23 2.52
2822 3203 6.670695 AGCCCTCAAATAAACATGTTTCTT 57.329 33.333 26.46 19.84 34.23 2.52
2823 3204 7.066307 AGCCCTCAAATAAACATGTTTCTTT 57.934 32.000 26.46 23.98 34.23 2.52
2824 3205 6.930722 AGCCCTCAAATAAACATGTTTCTTTG 59.069 34.615 34.30 34.30 42.72 2.77
2825 3206 6.705825 GCCCTCAAATAAACATGTTTCTTTGT 59.294 34.615 35.97 18.47 42.35 2.83
2826 3207 7.307337 GCCCTCAAATAAACATGTTTCTTTGTG 60.307 37.037 35.97 33.88 42.35 3.33
2827 3208 7.925483 CCCTCAAATAAACATGTTTCTTTGTGA 59.075 33.333 35.69 26.99 42.35 3.58
2828 3209 9.311916 CCTCAAATAAACATGTTTCTTTGTGAA 57.688 29.630 35.69 26.18 42.35 3.18
2869 3250 8.978874 AATAAGAATGCATATGTACTTGTGGA 57.021 30.769 0.00 5.12 0.00 4.02
2870 3251 8.978874 ATAAGAATGCATATGTACTTGTGGAA 57.021 30.769 0.00 0.00 0.00 3.53
2871 3252 7.701539 AAGAATGCATATGTACTTGTGGAAA 57.298 32.000 0.00 0.00 0.00 3.13
2872 3253 7.701539 AGAATGCATATGTACTTGTGGAAAA 57.298 32.000 0.00 0.00 0.00 2.29
2873 3254 7.765307 AGAATGCATATGTACTTGTGGAAAAG 58.235 34.615 0.00 0.00 0.00 2.27
2874 3255 7.611467 AGAATGCATATGTACTTGTGGAAAAGA 59.389 33.333 0.00 0.00 0.00 2.52
2875 3256 6.741992 TGCATATGTACTTGTGGAAAAGAG 57.258 37.500 4.29 0.00 0.00 2.85
2876 3257 6.237901 TGCATATGTACTTGTGGAAAAGAGT 58.762 36.000 4.29 0.00 0.00 3.24
2877 3258 7.390823 TGCATATGTACTTGTGGAAAAGAGTA 58.609 34.615 4.29 0.00 0.00 2.59
2878 3259 7.333423 TGCATATGTACTTGTGGAAAAGAGTAC 59.667 37.037 4.29 5.75 42.86 2.73
2879 3260 7.549488 GCATATGTACTTGTGGAAAAGAGTACT 59.451 37.037 4.29 0.00 42.94 2.73
2880 3261 8.873830 CATATGTACTTGTGGAAAAGAGTACTG 58.126 37.037 0.00 1.65 42.94 2.74
2881 3262 5.054477 TGTACTTGTGGAAAAGAGTACTGC 58.946 41.667 0.00 0.00 42.94 4.40
2882 3263 4.150897 ACTTGTGGAAAAGAGTACTGCA 57.849 40.909 0.00 0.00 0.00 4.41
2883 3264 4.718961 ACTTGTGGAAAAGAGTACTGCAT 58.281 39.130 0.00 0.00 0.00 3.96
2884 3265 5.865085 ACTTGTGGAAAAGAGTACTGCATA 58.135 37.500 0.00 0.00 0.00 3.14
2885 3266 6.296026 ACTTGTGGAAAAGAGTACTGCATAA 58.704 36.000 0.00 0.00 0.00 1.90
2886 3267 6.942576 ACTTGTGGAAAAGAGTACTGCATAAT 59.057 34.615 0.00 0.00 0.00 1.28
2887 3268 7.448469 ACTTGTGGAAAAGAGTACTGCATAATT 59.552 33.333 0.00 0.00 0.00 1.40
2888 3269 7.759489 TGTGGAAAAGAGTACTGCATAATTT 57.241 32.000 0.00 0.00 0.00 1.82
2889 3270 8.177119 TGTGGAAAAGAGTACTGCATAATTTT 57.823 30.769 0.00 0.00 0.00 1.82
2890 3271 8.637986 TGTGGAAAAGAGTACTGCATAATTTTT 58.362 29.630 0.00 0.00 0.00 1.94
2927 3308 9.643693 AAGTACTGCATAATTTCTGGAAATTTG 57.356 29.630 21.27 18.64 45.67 2.32
2977 3363 5.473931 GCTTCAACTGACTCAGACTCATTA 58.526 41.667 13.25 0.00 35.18 1.90
2978 3364 5.347364 GCTTCAACTGACTCAGACTCATTAC 59.653 44.000 13.25 0.00 35.18 1.89
2980 3366 4.832823 TCAACTGACTCAGACTCATTACCA 59.167 41.667 13.25 0.00 35.18 3.25
2981 3367 4.792521 ACTGACTCAGACTCATTACCAC 57.207 45.455 13.25 0.00 35.18 4.16
2982 3368 4.411927 ACTGACTCAGACTCATTACCACT 58.588 43.478 13.25 0.00 35.18 4.00
2984 3370 6.191315 ACTGACTCAGACTCATTACCACTAT 58.809 40.000 13.25 0.00 35.18 2.12
3000 3391 9.863650 ATTACCACTATTCTTCTAGTAGTAGCA 57.136 33.333 0.00 0.00 30.86 3.49
3038 3429 6.318648 GTGATGGTTTTCTGATGCCATTACTA 59.681 38.462 16.10 0.00 41.69 1.82
3039 3430 6.543465 TGATGGTTTTCTGATGCCATTACTAG 59.457 38.462 8.75 0.00 41.33 2.57
3084 3475 1.376609 GGGATGGATCGTGTGCAACC 61.377 60.000 0.00 3.71 39.88 3.77
3120 3511 2.802724 CGGGTGTATCCGGGCATGA 61.803 63.158 0.00 0.00 45.78 3.07
3221 3612 1.143969 GATACCCGCTTCGGTGAACG 61.144 60.000 4.47 0.00 46.80 3.95
3242 3633 8.830580 TGAACGCTACGATTATTTAGTACTAGT 58.169 33.333 0.00 0.00 0.00 2.57
3343 3734 3.413327 TGTATGTACGGTGCCAATTTGT 58.587 40.909 0.00 0.00 0.00 2.83
3369 3760 8.694540 TGAGAAAGAAAGATGAATGGAAAAACA 58.305 29.630 0.00 0.00 0.00 2.83
3370 3761 8.877808 AGAAAGAAAGATGAATGGAAAAACAC 57.122 30.769 0.00 0.00 0.00 3.32
3403 3794 4.706476 TGCAGTTTCTAGGGGAATTTGATG 59.294 41.667 0.00 0.00 33.53 3.07
3404 3795 4.949856 GCAGTTTCTAGGGGAATTTGATGA 59.050 41.667 0.00 0.00 33.53 2.92
3405 3796 5.595952 GCAGTTTCTAGGGGAATTTGATGAT 59.404 40.000 0.00 0.00 33.53 2.45
3406 3797 6.772716 GCAGTTTCTAGGGGAATTTGATGATA 59.227 38.462 0.00 0.00 33.53 2.15
3407 3798 7.449704 GCAGTTTCTAGGGGAATTTGATGATAT 59.550 37.037 0.00 0.00 33.53 1.63
3408 3799 8.790718 CAGTTTCTAGGGGAATTTGATGATATG 58.209 37.037 0.00 0.00 33.53 1.78
3413 3804 9.170890 TCTAGGGGAATTTGATGATATGTAAGT 57.829 33.333 0.00 0.00 0.00 2.24
3441 3842 4.542697 AGTAAGATGTTGGGTTGTTGGTT 58.457 39.130 0.00 0.00 0.00 3.67
3470 3871 4.398319 TGAGAAAAGATCCCACAGAAACC 58.602 43.478 0.00 0.00 0.00 3.27
3588 3992 9.597681 TCTTATAATAGTTTATCCTTCCCGTCT 57.402 33.333 0.00 0.00 30.64 4.18
3589 3993 9.640963 CTTATAATAGTTTATCCTTCCCGTCTG 57.359 37.037 0.00 0.00 30.64 3.51
3594 4090 5.001874 AGTTTATCCTTCCCGTCTGAAAAC 58.998 41.667 0.00 0.00 0.00 2.43
3627 4129 6.976636 AGGATAAGAGAAAGAGCGAAAAAG 57.023 37.500 0.00 0.00 0.00 2.27
3629 4131 5.875359 GGATAAGAGAAAGAGCGAAAAAGGA 59.125 40.000 0.00 0.00 0.00 3.36
3641 4143 3.245284 GCGAAAAAGGAAAAGCTTGTTCC 59.755 43.478 22.57 22.57 44.25 3.62
3706 4208 6.376299 TGGAAATCATCACATCCTTCTCAAAG 59.624 38.462 0.00 0.00 33.02 2.77
3766 4268 7.926555 CGGAGGTTCTAGACATTTTGTATACAT 59.073 37.037 6.36 0.00 0.00 2.29
3831 4342 6.039493 CCAGTCTAGTGTACCAACTACTATGG 59.961 46.154 0.00 0.00 43.84 2.74
3993 4521 4.695217 TCAAAGTGTTTGTCTCAACCAC 57.305 40.909 2.75 2.75 41.36 4.16
3997 4525 2.936498 AGTGTTTGTCTCAACCACGAAG 59.064 45.455 0.00 0.00 0.00 3.79
3998 4526 8.481079 CAAAGTGTTTGTCTCAACCACGAAGT 62.481 42.308 0.00 0.00 37.21 3.01
4014 4542 5.445939 CCACGAAGTTCAAAATATCCACTCG 60.446 44.000 3.32 0.00 41.61 4.18
4031 4559 4.382685 CCACTCGGAAGAAATAGGCTGTTA 60.383 45.833 0.00 0.00 41.32 2.41
4034 4562 6.984474 CACTCGGAAGAAATAGGCTGTTATTA 59.016 38.462 0.00 0.00 41.32 0.98
4047 4575 9.717942 ATAGGCTGTTATTAGAACTCATGATTC 57.282 33.333 0.00 2.95 0.00 2.52
4057 4585 9.953697 ATTAGAACTCATGATTCGTAAGTACTC 57.046 33.333 0.00 0.00 39.48 2.59
4058 4586 6.797454 AGAACTCATGATTCGTAAGTACTCC 58.203 40.000 0.00 0.00 39.48 3.85
4059 4587 5.517322 ACTCATGATTCGTAAGTACTCCC 57.483 43.478 0.00 0.00 39.48 4.30
4060 4588 5.202004 ACTCATGATTCGTAAGTACTCCCT 58.798 41.667 0.00 0.00 39.48 4.20
4061 4589 5.299782 ACTCATGATTCGTAAGTACTCCCTC 59.700 44.000 0.00 0.00 39.48 4.30
4062 4590 4.583489 TCATGATTCGTAAGTACTCCCTCC 59.417 45.833 0.00 0.00 39.48 4.30
4063 4591 2.947652 TGATTCGTAAGTACTCCCTCCG 59.052 50.000 0.00 0.00 39.48 4.63
4064 4592 2.496899 TTCGTAAGTACTCCCTCCGT 57.503 50.000 0.00 0.00 39.48 4.69
4065 4593 2.496899 TCGTAAGTACTCCCTCCGTT 57.503 50.000 0.00 0.00 39.48 4.44
4066 4594 2.359900 TCGTAAGTACTCCCTCCGTTC 58.640 52.381 0.00 0.00 39.48 3.95
4067 4595 1.403323 CGTAAGTACTCCCTCCGTTCC 59.597 57.143 0.00 0.00 0.00 3.62
4068 4596 2.732763 GTAAGTACTCCCTCCGTTCCT 58.267 52.381 0.00 0.00 0.00 3.36
4069 4597 3.682718 CGTAAGTACTCCCTCCGTTCCTA 60.683 52.174 0.00 0.00 0.00 2.94
4070 4598 3.463048 AAGTACTCCCTCCGTTCCTAA 57.537 47.619 0.00 0.00 0.00 2.69
4071 4599 3.463048 AGTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
4072 4600 3.991683 AGTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
4073 4601 5.134725 AGTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
4074 4602 5.713807 AGTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
4075 4603 6.141790 AGTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
4076 4604 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4077 4605 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4078 4606 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4079 4607 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4080 4608 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4081 4609 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4082 4610 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4083 4611 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4084 4612 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4085 4613 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4086 4614 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4087 4615 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4100 4628 8.924511 TTGTCTTTCTAGAGATTTCAAATGGT 57.075 30.769 0.00 0.00 0.00 3.55
4101 4629 8.553459 TGTCTTTCTAGAGATTTCAAATGGTC 57.447 34.615 0.00 0.00 0.00 4.02
4102 4630 8.156820 TGTCTTTCTAGAGATTTCAAATGGTCA 58.843 33.333 0.00 0.00 0.00 4.02
4103 4631 8.447053 GTCTTTCTAGAGATTTCAAATGGTCAC 58.553 37.037 0.00 0.00 0.00 3.67
4104 4632 7.607991 TCTTTCTAGAGATTTCAAATGGTCACC 59.392 37.037 0.00 0.00 0.00 4.02
4105 4633 6.373005 TCTAGAGATTTCAAATGGTCACCA 57.627 37.500 0.00 0.00 38.19 4.17
4106 4634 6.173339 TCTAGAGATTTCAAATGGTCACCAC 58.827 40.000 0.00 0.00 35.80 4.16
4107 4635 4.728772 AGAGATTTCAAATGGTCACCACA 58.271 39.130 0.00 0.00 35.80 4.17
4108 4636 5.327732 AGAGATTTCAAATGGTCACCACAT 58.672 37.500 0.00 0.00 35.80 3.21
4109 4637 6.484288 AGAGATTTCAAATGGTCACCACATA 58.516 36.000 0.00 0.00 35.80 2.29
4110 4638 6.375455 AGAGATTTCAAATGGTCACCACATAC 59.625 38.462 0.00 0.00 35.80 2.39
4111 4639 4.757799 TTTCAAATGGTCACCACATACG 57.242 40.909 0.00 0.00 35.80 3.06
4112 4640 2.705730 TCAAATGGTCACCACATACGG 58.294 47.619 0.00 0.00 35.80 4.02
4113 4641 2.303311 TCAAATGGTCACCACATACGGA 59.697 45.455 0.00 0.00 35.80 4.69
4114 4642 3.054728 TCAAATGGTCACCACATACGGAT 60.055 43.478 0.00 0.00 35.80 4.18
4115 4643 2.620251 ATGGTCACCACATACGGATG 57.380 50.000 5.94 5.94 35.80 3.51
4117 4645 2.458620 TGGTCACCACATACGGATGTA 58.541 47.619 14.23 0.00 44.82 2.29
4118 4646 3.035363 TGGTCACCACATACGGATGTAT 58.965 45.455 14.23 1.38 44.82 2.29
4119 4647 4.216708 TGGTCACCACATACGGATGTATA 58.783 43.478 14.23 0.00 44.82 1.47
4120 4648 4.836175 TGGTCACCACATACGGATGTATAT 59.164 41.667 14.23 0.00 44.82 0.86
4121 4649 6.011481 TGGTCACCACATACGGATGTATATA 58.989 40.000 14.23 0.00 44.82 0.86
4122 4650 6.152154 TGGTCACCACATACGGATGTATATAG 59.848 42.308 14.23 0.00 44.82 1.31
4123 4651 6.376299 GGTCACCACATACGGATGTATATAGA 59.624 42.308 14.23 4.80 44.82 1.98
4124 4652 7.249147 GTCACCACATACGGATGTATATAGAC 58.751 42.308 14.23 12.97 44.82 2.59
4125 4653 6.943718 TCACCACATACGGATGTATATAGACA 59.056 38.462 14.23 2.07 44.82 3.41
4126 4654 7.614192 TCACCACATACGGATGTATATAGACAT 59.386 37.037 14.23 12.70 44.82 3.06
4127 4655 8.899771 CACCACATACGGATGTATATAGACATA 58.100 37.037 14.23 0.00 44.82 2.29
4128 4656 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
4157 4685 8.885494 AGAGTATAGATTCACTCATTTTGCTC 57.115 34.615 4.70 0.00 42.99 4.26
4158 4686 7.930865 AGAGTATAGATTCACTCATTTTGCTCC 59.069 37.037 4.70 0.00 42.99 4.70
4159 4687 5.998454 ATAGATTCACTCATTTTGCTCCG 57.002 39.130 0.00 0.00 0.00 4.63
4160 4688 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
4161 4689 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
4162 4690 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
4163 4691 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4164 4692 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4165 4693 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4166 4694 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4167 4695 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4168 4696 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4169 4697 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4170 4698 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4171 4699 2.953466 TTGCTCCGTATGTAGTCACC 57.047 50.000 0.00 0.00 0.00 4.02
4172 4700 1.842052 TGCTCCGTATGTAGTCACCA 58.158 50.000 0.00 0.00 0.00 4.17
4173 4701 2.384828 TGCTCCGTATGTAGTCACCAT 58.615 47.619 0.00 0.00 0.00 3.55
4174 4702 2.764010 TGCTCCGTATGTAGTCACCATT 59.236 45.455 0.00 0.00 0.00 3.16
4175 4703 3.196901 TGCTCCGTATGTAGTCACCATTT 59.803 43.478 0.00 0.00 0.00 2.32
4176 4704 3.555956 GCTCCGTATGTAGTCACCATTTG 59.444 47.826 0.00 0.00 0.00 2.32
4177 4705 4.679639 GCTCCGTATGTAGTCACCATTTGA 60.680 45.833 0.00 0.00 0.00 2.69
4178 4706 5.408880 TCCGTATGTAGTCACCATTTGAA 57.591 39.130 0.00 0.00 35.39 2.69
4179 4707 5.795972 TCCGTATGTAGTCACCATTTGAAA 58.204 37.500 0.00 0.00 35.39 2.69
4180 4708 5.640357 TCCGTATGTAGTCACCATTTGAAAC 59.360 40.000 0.00 0.00 35.39 2.78
4181 4709 5.163794 CCGTATGTAGTCACCATTTGAAACC 60.164 44.000 0.00 0.00 35.39 3.27
4182 4710 5.642063 CGTATGTAGTCACCATTTGAAACCT 59.358 40.000 0.00 0.00 35.39 3.50
4183 4711 6.183360 CGTATGTAGTCACCATTTGAAACCTC 60.183 42.308 0.00 0.00 35.39 3.85
4184 4712 5.304686 TGTAGTCACCATTTGAAACCTCT 57.695 39.130 0.00 0.00 35.39 3.69
4185 4713 6.428083 TGTAGTCACCATTTGAAACCTCTA 57.572 37.500 0.00 0.00 35.39 2.43
4186 4714 6.833041 TGTAGTCACCATTTGAAACCTCTAA 58.167 36.000 0.00 0.00 35.39 2.10
4187 4715 7.284074 TGTAGTCACCATTTGAAACCTCTAAA 58.716 34.615 0.00 0.00 35.39 1.85
4188 4716 7.776030 TGTAGTCACCATTTGAAACCTCTAAAA 59.224 33.333 0.00 0.00 35.39 1.52
4189 4717 7.654022 AGTCACCATTTGAAACCTCTAAAAA 57.346 32.000 0.00 0.00 35.39 1.94
4190 4718 7.716612 AGTCACCATTTGAAACCTCTAAAAAG 58.283 34.615 0.00 0.00 35.39 2.27
4191 4719 7.559897 AGTCACCATTTGAAACCTCTAAAAAGA 59.440 33.333 0.00 0.00 35.39 2.52
4192 4720 7.648112 GTCACCATTTGAAACCTCTAAAAAGAC 59.352 37.037 0.00 0.00 35.39 3.01
4193 4721 7.340743 TCACCATTTGAAACCTCTAAAAAGACA 59.659 33.333 0.00 0.00 0.00 3.41
4194 4722 7.978975 CACCATTTGAAACCTCTAAAAAGACAA 59.021 33.333 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.470098 AGTGTAACCGTAGTAGTGGCG 59.530 52.381 0.00 0.00 37.80 5.69
1 2 3.582714 AAGTGTAACCGTAGTAGTGGC 57.417 47.619 0.00 0.00 37.80 5.01
22 23 0.603707 CTGATGACGCTGGGTTGTGT 60.604 55.000 0.00 0.00 0.00 3.72
26 27 1.296715 GGACTGATGACGCTGGGTT 59.703 57.895 0.00 0.00 0.00 4.11
30 31 5.755375 ACTAATAATTGGACTGATGACGCTG 59.245 40.000 0.00 0.00 0.00 5.18
31 32 5.918608 ACTAATAATTGGACTGATGACGCT 58.081 37.500 0.00 0.00 0.00 5.07
41 42 7.215194 CGCGTATACGAGTACTAATAATTGGAC 59.785 40.741 28.66 3.38 43.02 4.02
119 125 3.295973 TCCATCATGATCGGTGTACAGA 58.704 45.455 18.08 0.00 0.00 3.41
132 142 2.378084 CGCCGATCGCTCCATCATG 61.378 63.158 10.32 0.00 34.21 3.07
164 174 6.363577 TCATGAAGCCGAGATTTTTCATAC 57.636 37.500 0.00 0.00 37.98 2.39
173 183 1.764723 TGTGGATCATGAAGCCGAGAT 59.235 47.619 0.00 0.00 0.00 2.75
177 187 1.233019 GGATGTGGATCATGAAGCCG 58.767 55.000 0.00 0.00 36.83 5.52
195 205 6.017605 GGCAGTAGAGTATTTCATTCATGTGG 60.018 42.308 0.00 0.00 0.00 4.17
196 206 6.017605 GGGCAGTAGAGTATTTCATTCATGTG 60.018 42.308 0.00 0.00 0.00 3.21
198 208 6.057533 TGGGCAGTAGAGTATTTCATTCATG 58.942 40.000 0.00 0.00 0.00 3.07
199 209 6.126652 ACTGGGCAGTAGAGTATTTCATTCAT 60.127 38.462 0.00 0.00 40.43 2.57
200 210 5.189736 ACTGGGCAGTAGAGTATTTCATTCA 59.810 40.000 0.00 0.00 40.43 2.57
202 212 5.431765 CACTGGGCAGTAGAGTATTTCATT 58.568 41.667 0.00 0.00 40.20 2.57
205 215 3.198872 GCACTGGGCAGTAGAGTATTTC 58.801 50.000 0.00 0.00 43.97 2.17
206 216 3.268023 GCACTGGGCAGTAGAGTATTT 57.732 47.619 0.00 0.00 43.97 1.40
207 217 2.990066 GCACTGGGCAGTAGAGTATT 57.010 50.000 0.00 0.00 43.97 1.89
247 257 2.678336 GTTTCTTTACCAGGCAGGATCG 59.322 50.000 1.67 0.00 41.22 3.69
252 272 2.162681 CCCTGTTTCTTTACCAGGCAG 58.837 52.381 0.00 0.00 43.61 4.85
270 292 2.269241 CTGACGCCCCTTCTTCCC 59.731 66.667 0.00 0.00 0.00 3.97
272 294 1.079057 GACCTGACGCCCCTTCTTC 60.079 63.158 0.00 0.00 0.00 2.87
323 345 2.961062 GCAGATCCCCAAGCATAAATGT 59.039 45.455 0.00 0.00 0.00 2.71
374 397 5.448768 CGAATCCTCTGAATGTACGTACAGT 60.449 44.000 30.15 28.63 39.92 3.55
376 399 4.201980 CCGAATCCTCTGAATGTACGTACA 60.202 45.833 29.15 29.15 40.98 2.90
377 400 4.288531 CCGAATCCTCTGAATGTACGTAC 58.711 47.826 18.90 18.90 0.00 3.67
378 401 3.317149 CCCGAATCCTCTGAATGTACGTA 59.683 47.826 0.00 0.00 0.00 3.57
379 402 2.100916 CCCGAATCCTCTGAATGTACGT 59.899 50.000 0.00 0.00 0.00 3.57
380 403 2.545952 CCCCGAATCCTCTGAATGTACG 60.546 54.545 0.00 0.00 0.00 3.67
381 404 2.807108 GCCCCGAATCCTCTGAATGTAC 60.807 54.545 0.00 0.00 0.00 2.90
420 443 0.533032 GGAAGAAGACCTCTGACCCG 59.467 60.000 0.00 0.00 33.37 5.28
449 477 1.298413 CTATCGTCACCGCTCACCG 60.298 63.158 0.00 0.00 0.00 4.94
455 483 2.838386 TTACACTCTATCGTCACCGC 57.162 50.000 0.00 0.00 0.00 5.68
456 484 4.916870 TGAATTACACTCTATCGTCACCG 58.083 43.478 0.00 0.00 0.00 4.94
469 497 3.624861 CAGCCCATCACTCTGAATTACAC 59.375 47.826 0.00 0.00 0.00 2.90
470 498 3.519107 TCAGCCCATCACTCTGAATTACA 59.481 43.478 0.00 0.00 34.30 2.41
471 499 3.873952 GTCAGCCCATCACTCTGAATTAC 59.126 47.826 0.00 0.00 38.42 1.89
498 531 1.956620 GCGTTCTAACTCCACTGCGC 61.957 60.000 0.00 0.00 36.97 6.09
502 535 1.961394 TCACTGCGTTCTAACTCCACT 59.039 47.619 0.00 0.00 0.00 4.00
551 584 3.799753 CGAAAGCACTCGGGATGG 58.200 61.111 0.00 0.00 35.14 3.51
612 645 2.446282 ACAGCGTTGCTTTTTGTTACG 58.554 42.857 0.00 0.00 36.40 3.18
641 675 5.899299 TCCCTCTTGTTTATACTCGTAAGC 58.101 41.667 0.00 0.00 37.18 3.09
642 676 7.330900 TCTCCCTCTTGTTTATACTCGTAAG 57.669 40.000 0.00 0.00 0.00 2.34
643 677 7.707624 TTCTCCCTCTTGTTTATACTCGTAA 57.292 36.000 0.00 0.00 0.00 3.18
644 678 7.613022 TCTTTCTCCCTCTTGTTTATACTCGTA 59.387 37.037 0.00 0.00 0.00 3.43
645 679 6.436532 TCTTTCTCCCTCTTGTTTATACTCGT 59.563 38.462 0.00 0.00 0.00 4.18
646 680 6.864342 TCTTTCTCCCTCTTGTTTATACTCG 58.136 40.000 0.00 0.00 0.00 4.18
648 682 8.881262 TCTTTCTTTCTCCCTCTTGTTTATACT 58.119 33.333 0.00 0.00 0.00 2.12
649 683 9.674068 ATCTTTCTTTCTCCCTCTTGTTTATAC 57.326 33.333 0.00 0.00 0.00 1.47
651 685 7.121907 GCATCTTTCTTTCTCCCTCTTGTTTAT 59.878 37.037 0.00 0.00 0.00 1.40
656 700 3.373439 CGCATCTTTCTTTCTCCCTCTTG 59.627 47.826 0.00 0.00 0.00 3.02
660 704 1.003580 TGCGCATCTTTCTTTCTCCCT 59.996 47.619 5.66 0.00 0.00 4.20
663 709 3.496155 CCTTTGCGCATCTTTCTTTCTC 58.504 45.455 12.75 0.00 0.00 2.87
675 721 4.722700 GAGGGGAGCCTTTGCGCA 62.723 66.667 5.66 5.66 44.33 6.09
688 734 4.080129 TCAAGAATTCAAGATCCAGGAGGG 60.080 45.833 8.44 0.00 34.83 4.30
755 801 2.125685 GAAGTATAGTTTCCGGAGCGC 58.874 52.381 3.34 0.00 0.00 5.92
756 802 3.712091 AGAAGTATAGTTTCCGGAGCG 57.288 47.619 3.34 0.00 0.00 5.03
772 818 8.731605 TCTACAGTTGTAGTATGACTGAAGAAG 58.268 37.037 16.52 11.18 46.08 2.85
773 819 8.631480 TCTACAGTTGTAGTATGACTGAAGAA 57.369 34.615 16.52 4.88 46.08 2.52
799 849 2.827755 ACCCCTCTCTTCTCTTCTTCC 58.172 52.381 0.00 0.00 0.00 3.46
808 858 1.691195 GCCTGCCTACCCCTCTCTTC 61.691 65.000 0.00 0.00 0.00 2.87
809 859 1.690985 GCCTGCCTACCCCTCTCTT 60.691 63.158 0.00 0.00 0.00 2.85
811 861 2.365635 TGCCTGCCTACCCCTCTC 60.366 66.667 0.00 0.00 0.00 3.20
812 862 2.689034 GTGCCTGCCTACCCCTCT 60.689 66.667 0.00 0.00 0.00 3.69
813 863 4.162690 CGTGCCTGCCTACCCCTC 62.163 72.222 0.00 0.00 0.00 4.30
816 866 3.447025 CTAGCGTGCCTGCCTACCC 62.447 68.421 0.00 0.00 34.65 3.69
817 867 2.107141 CTAGCGTGCCTGCCTACC 59.893 66.667 0.00 0.00 34.65 3.18
819 869 1.379977 AGTCTAGCGTGCCTGCCTA 60.380 57.895 0.00 0.00 34.65 3.93
822 872 3.191539 GCAGTCTAGCGTGCCTGC 61.192 66.667 5.33 5.33 42.94 4.85
823 873 1.808799 CTGCAGTCTAGCGTGCCTG 60.809 63.158 5.25 3.76 39.04 4.85
837 1082 5.939883 AGAGCATTTTTATACTGTCACTGCA 59.060 36.000 0.00 0.00 0.00 4.41
855 1100 2.012824 TAGGAGGGCGAGGAGAGCAT 62.013 60.000 0.00 0.00 36.08 3.79
857 1106 1.455959 TTAGGAGGGCGAGGAGAGC 60.456 63.158 0.00 0.00 0.00 4.09
895 1158 0.108329 TAGCCTTCTACTGCCGTTGC 60.108 55.000 0.00 0.00 38.26 4.17
899 1162 1.537135 GCTTCTAGCCTTCTACTGCCG 60.537 57.143 0.00 0.00 34.48 5.69
900 1163 1.482593 TGCTTCTAGCCTTCTACTGCC 59.517 52.381 0.00 0.00 41.51 4.85
901 1164 2.428890 TCTGCTTCTAGCCTTCTACTGC 59.571 50.000 0.00 0.00 41.51 4.40
902 1165 3.490761 GCTCTGCTTCTAGCCTTCTACTG 60.491 52.174 0.00 0.00 41.51 2.74
903 1166 2.693074 GCTCTGCTTCTAGCCTTCTACT 59.307 50.000 0.00 0.00 41.51 2.57
904 1167 2.428890 TGCTCTGCTTCTAGCCTTCTAC 59.571 50.000 0.00 0.00 41.51 2.59
905 1168 2.692557 CTGCTCTGCTTCTAGCCTTCTA 59.307 50.000 0.00 0.00 41.51 2.10
906 1169 1.481772 CTGCTCTGCTTCTAGCCTTCT 59.518 52.381 0.00 0.00 41.51 2.85
907 1170 1.480137 TCTGCTCTGCTTCTAGCCTTC 59.520 52.381 0.00 0.00 41.51 3.46
908 1171 1.566211 TCTGCTCTGCTTCTAGCCTT 58.434 50.000 0.00 0.00 41.51 4.35
909 1172 1.481772 CTTCTGCTCTGCTTCTAGCCT 59.518 52.381 0.00 0.00 41.51 4.58
910 1173 1.938625 CTTCTGCTCTGCTTCTAGCC 58.061 55.000 0.00 0.00 41.51 3.93
911 1174 1.289276 GCTTCTGCTCTGCTTCTAGC 58.711 55.000 0.00 0.00 37.76 3.42
912 1175 1.206610 TGGCTTCTGCTCTGCTTCTAG 59.793 52.381 0.00 0.00 39.59 2.43
913 1176 1.206610 CTGGCTTCTGCTCTGCTTCTA 59.793 52.381 0.00 0.00 39.59 2.10
914 1177 0.036199 CTGGCTTCTGCTCTGCTTCT 60.036 55.000 0.00 0.00 39.59 2.85
915 1178 0.036577 TCTGGCTTCTGCTCTGCTTC 60.037 55.000 0.00 0.00 39.59 3.86
924 1187 0.813210 GGCTTCGGATCTGGCTTCTG 60.813 60.000 0.62 0.00 0.00 3.02
1000 1263 2.765135 CGAGCTCCATCTCCATATCCAT 59.235 50.000 8.47 0.00 0.00 3.41
1001 1264 2.174360 CGAGCTCCATCTCCATATCCA 58.826 52.381 8.47 0.00 0.00 3.41
1002 1265 2.165437 GTCGAGCTCCATCTCCATATCC 59.835 54.545 8.47 0.00 0.00 2.59
1003 1266 2.159448 CGTCGAGCTCCATCTCCATATC 60.159 54.545 8.47 0.00 0.00 1.63
1004 1267 1.815613 CGTCGAGCTCCATCTCCATAT 59.184 52.381 8.47 0.00 0.00 1.78
1005 1268 1.239347 CGTCGAGCTCCATCTCCATA 58.761 55.000 8.47 0.00 0.00 2.74
1066 1329 4.840005 GGGGCGAAAGGAGAGGCG 62.840 72.222 0.00 0.00 0.00 5.52
1079 1342 0.902531 TACAGACAAGTAGCAGGGGC 59.097 55.000 0.00 0.00 41.61 5.80
1080 1343 2.180276 AGTACAGACAAGTAGCAGGGG 58.820 52.381 0.00 0.00 0.00 4.79
1081 1344 4.017808 AGTAGTACAGACAAGTAGCAGGG 58.982 47.826 2.52 0.00 0.00 4.45
1082 1345 6.016943 GGATAGTAGTACAGACAAGTAGCAGG 60.017 46.154 2.52 0.00 0.00 4.85
1102 1365 0.835941 ACTGCTCCAGCCAAGGATAG 59.164 55.000 0.00 0.00 41.18 2.08
1105 1376 1.903877 GCTACTGCTCCAGCCAAGGA 61.904 60.000 0.00 0.00 41.18 3.36
1133 1412 4.250305 ACCTGCGACCACACACCC 62.250 66.667 0.00 0.00 0.00 4.61
1142 1421 1.021390 ATAGTGCTTGCACCTGCGAC 61.021 55.000 20.39 0.00 45.83 5.19
1161 1440 2.041922 ATCCTGCACCGCCTCCTA 60.042 61.111 0.00 0.00 0.00 2.94
1258 1537 2.311542 AGAGAGCAAGGAGAAGAGAGGA 59.688 50.000 0.00 0.00 0.00 3.71
1270 1549 2.674747 GCAGACCAGAGAAGAGAGCAAG 60.675 54.545 0.00 0.00 0.00 4.01
1303 1582 5.695851 AAGAACGAAAGAAATGTGAGCAT 57.304 34.783 0.00 0.00 36.80 3.79
1305 1584 4.676924 CCAAAGAACGAAAGAAATGTGAGC 59.323 41.667 0.00 0.00 0.00 4.26
1339 1618 4.464008 AGAACAAGATGCAGTTGGAAAGA 58.536 39.130 14.35 0.00 0.00 2.52
1344 1623 4.543692 CAAGAAGAACAAGATGCAGTTGG 58.456 43.478 14.35 0.00 0.00 3.77
1347 1626 4.090761 TCCAAGAAGAACAAGATGCAGT 57.909 40.909 0.00 0.00 0.00 4.40
1357 1636 2.115343 AAGCCCGATCCAAGAAGAAC 57.885 50.000 0.00 0.00 0.00 3.01
1370 1653 1.814169 GCCCGTCTTTCTAAGCCCG 60.814 63.158 0.00 0.00 0.00 6.13
1455 1742 8.531982 GCACTGGGAACATAATAGATAGTATGA 58.468 37.037 12.77 0.00 41.51 2.15
1456 1743 7.766278 GGCACTGGGAACATAATAGATAGTATG 59.234 40.741 5.92 5.92 41.51 2.39
1457 1744 7.092846 GGGCACTGGGAACATAATAGATAGTAT 60.093 40.741 0.00 0.00 41.51 2.12
1458 1745 6.212791 GGGCACTGGGAACATAATAGATAGTA 59.787 42.308 0.00 0.00 41.51 1.82
1459 1746 5.013183 GGGCACTGGGAACATAATAGATAGT 59.987 44.000 0.00 0.00 41.51 2.12
1460 1747 5.491982 GGGCACTGGGAACATAATAGATAG 58.508 45.833 0.00 0.00 41.51 2.08
1461 1748 4.020573 CGGGCACTGGGAACATAATAGATA 60.021 45.833 0.00 0.00 41.51 1.98
1462 1749 3.244561 CGGGCACTGGGAACATAATAGAT 60.245 47.826 0.00 0.00 41.51 1.98
1463 1750 2.104111 CGGGCACTGGGAACATAATAGA 59.896 50.000 0.00 0.00 41.51 1.98
1464 1751 2.494059 CGGGCACTGGGAACATAATAG 58.506 52.381 0.00 0.00 41.51 1.73
1465 1752 2.631160 CGGGCACTGGGAACATAATA 57.369 50.000 0.00 0.00 41.51 0.98
1466 1753 3.494850 CGGGCACTGGGAACATAAT 57.505 52.632 0.00 0.00 41.51 1.28
1478 1765 1.886542 AGAAACAAGATTTCCGGGCAC 59.113 47.619 0.00 0.00 0.00 5.01
1487 1774 6.603201 TGAAGGTGAAGTCAAGAAACAAGATT 59.397 34.615 0.00 0.00 0.00 2.40
1500 1787 2.734079 CGAGAAAGCTGAAGGTGAAGTC 59.266 50.000 0.00 0.00 0.00 3.01
1513 1801 4.347813 TGTTGTTTTGTTAGCGAGAAAGC 58.652 39.130 0.00 0.00 37.41 3.51
1544 1839 5.237996 CAGACGAGACATATAACCTACGGAA 59.762 44.000 0.00 0.00 0.00 4.30
1608 1919 4.040376 GCAGCACAAGAAAGAAGAAAGTG 58.960 43.478 0.00 0.00 0.00 3.16
1609 1920 3.950395 AGCAGCACAAGAAAGAAGAAAGT 59.050 39.130 0.00 0.00 0.00 2.66
1638 1953 8.095169 AGTGTTATACCCAAACTCTGAAACTAG 58.905 37.037 0.00 0.00 31.43 2.57
1670 1985 0.184692 TGATCACCACCAGTGCCAAA 59.815 50.000 0.00 0.00 46.81 3.28
1674 1989 1.376543 CTGATGATCACCACCAGTGC 58.623 55.000 0.00 0.00 46.81 4.40
1676 1991 1.556911 GACCTGATGATCACCACCAGT 59.443 52.381 0.00 0.00 0.00 4.00
1677 1992 1.472201 CGACCTGATGATCACCACCAG 60.472 57.143 0.00 3.51 0.00 4.00
1678 1993 0.536724 CGACCTGATGATCACCACCA 59.463 55.000 0.00 0.00 0.00 4.17
1780 2095 1.267574 GCACAGGGACAGGGATCTCA 61.268 60.000 0.00 0.00 0.00 3.27
1781 2096 1.524482 GCACAGGGACAGGGATCTC 59.476 63.158 0.00 0.00 0.00 2.75
1782 2097 1.997874 GGCACAGGGACAGGGATCT 60.998 63.158 0.00 0.00 0.00 2.75
1783 2098 1.997874 AGGCACAGGGACAGGGATC 60.998 63.158 0.00 0.00 0.00 3.36
1784 2099 2.125912 AGGCACAGGGACAGGGAT 59.874 61.111 0.00 0.00 0.00 3.85
1798 2131 1.188863 AATCCAAATCCAGCACAGGC 58.811 50.000 0.00 0.00 41.61 4.85
1814 2147 4.506758 CCAATCACCACCAAATCCAAATC 58.493 43.478 0.00 0.00 0.00 2.17
1815 2148 3.263937 CCCAATCACCACCAAATCCAAAT 59.736 43.478 0.00 0.00 0.00 2.32
1816 2149 2.636893 CCCAATCACCACCAAATCCAAA 59.363 45.455 0.00 0.00 0.00 3.28
1817 2150 2.255406 CCCAATCACCACCAAATCCAA 58.745 47.619 0.00 0.00 0.00 3.53
1818 2151 1.148867 ACCCAATCACCACCAAATCCA 59.851 47.619 0.00 0.00 0.00 3.41
1819 2152 1.937191 ACCCAATCACCACCAAATCC 58.063 50.000 0.00 0.00 0.00 3.01
1920 2253 7.608376 TCAGTTCGGAAGATATGATAGGAGTAG 59.392 40.741 0.00 0.00 41.60 2.57
1936 2273 5.487433 TCTCAATTAAGCATCAGTTCGGAA 58.513 37.500 0.00 0.00 0.00 4.30
1939 2276 5.809562 AGTCTCTCAATTAAGCATCAGTTCG 59.190 40.000 0.00 0.00 0.00 3.95
1940 2277 6.815641 TCAGTCTCTCAATTAAGCATCAGTTC 59.184 38.462 0.00 0.00 0.00 3.01
1955 2292 2.800250 TCATGTGCTCTCAGTCTCTCA 58.200 47.619 0.00 0.00 0.00 3.27
1957 2294 3.306641 GGTTTCATGTGCTCTCAGTCTCT 60.307 47.826 0.00 0.00 0.00 3.10
1966 2303 0.895100 TGGCCTGGTTTCATGTGCTC 60.895 55.000 3.32 0.00 0.00 4.26
1971 2308 3.872771 GCATAATTTGGCCTGGTTTCATG 59.127 43.478 3.32 0.17 0.00 3.07
1973 2310 2.902486 TGCATAATTTGGCCTGGTTTCA 59.098 40.909 3.32 0.00 0.00 2.69
1974 2311 3.608316 TGCATAATTTGGCCTGGTTTC 57.392 42.857 3.32 0.00 0.00 2.78
1996 2333 9.467258 AGACTCATTTGTGAATTTTGTACAATG 57.533 29.630 9.56 0.67 34.63 2.82
2000 2337 8.958043 GTGAAGACTCATTTGTGAATTTTGTAC 58.042 33.333 0.00 0.00 33.05 2.90
2021 2360 7.697691 AGTACAACAACTGAATGAAAGTGAAG 58.302 34.615 0.00 0.00 0.00 3.02
2023 2362 7.624360 AAGTACAACAACTGAATGAAAGTGA 57.376 32.000 0.00 0.00 0.00 3.41
2029 2368 6.372937 TGTGTCAAAGTACAACAACTGAATGA 59.627 34.615 0.00 0.00 0.00 2.57
2039 2378 2.095919 GGGCGATGTGTCAAAGTACAAC 60.096 50.000 0.00 0.00 0.00 3.32
2041 2380 1.346395 AGGGCGATGTGTCAAAGTACA 59.654 47.619 0.00 0.00 0.00 2.90
2042 2381 1.732259 CAGGGCGATGTGTCAAAGTAC 59.268 52.381 0.00 0.00 0.00 2.73
2044 2383 0.396435 TCAGGGCGATGTGTCAAAGT 59.604 50.000 0.00 0.00 0.00 2.66
2045 2384 1.522668 TTCAGGGCGATGTGTCAAAG 58.477 50.000 0.00 0.00 0.00 2.77
2073 2412 1.186200 TCAGTTAGTCAGCTCGGCAT 58.814 50.000 0.00 0.00 0.00 4.40
2110 2449 2.294512 GCCTCCAACTCTGTTGGAAAAG 59.705 50.000 25.91 19.63 46.85 2.27
2112 2451 1.214175 TGCCTCCAACTCTGTTGGAAA 59.786 47.619 25.91 15.45 46.85 3.13
2146 2489 2.591429 CCGCACTTGTGGCAGTGA 60.591 61.111 9.30 0.00 46.29 3.41
2170 2513 5.074102 TCATGGAAGGAATAAGGATCATGCT 59.926 40.000 0.00 0.00 33.09 3.79
2171 2514 5.182760 GTCATGGAAGGAATAAGGATCATGC 59.817 44.000 0.00 0.00 33.09 4.06
2174 2517 5.191522 TGTGTCATGGAAGGAATAAGGATCA 59.808 40.000 0.00 0.00 0.00 2.92
2175 2518 5.684704 TGTGTCATGGAAGGAATAAGGATC 58.315 41.667 0.00 0.00 0.00 3.36
2178 2521 4.848357 ACTGTGTCATGGAAGGAATAAGG 58.152 43.478 0.00 0.00 0.00 2.69
2180 2523 4.622933 CGGACTGTGTCATGGAAGGAATAA 60.623 45.833 0.00 0.00 33.68 1.40
2182 2525 2.355108 CGGACTGTGTCATGGAAGGAAT 60.355 50.000 0.00 0.00 33.68 3.01
2183 2526 1.001974 CGGACTGTGTCATGGAAGGAA 59.998 52.381 0.00 0.00 33.68 3.36
2189 2532 2.002586 GTGATTCGGACTGTGTCATGG 58.997 52.381 0.00 0.00 33.68 3.66
2207 2550 2.464865 GAATCGGAGTGAATCGGAGTG 58.535 52.381 0.00 0.00 40.24 3.51
2208 2551 1.409427 GGAATCGGAGTGAATCGGAGT 59.591 52.381 0.00 0.00 40.24 3.85
2210 2553 1.480789 TGGAATCGGAGTGAATCGGA 58.519 50.000 0.00 0.00 41.05 4.55
2211 2554 1.933853 GTTGGAATCGGAGTGAATCGG 59.066 52.381 0.00 0.00 0.00 4.18
2212 2555 1.933853 GGTTGGAATCGGAGTGAATCG 59.066 52.381 0.00 0.00 0.00 3.34
2215 2559 4.771114 ATATGGTTGGAATCGGAGTGAA 57.229 40.909 0.00 0.00 0.00 3.18
2232 2576 4.984785 CCGGCGGATTGAGATACATATATG 59.015 45.833 24.41 11.29 0.00 1.78
2390 2734 3.879682 CATGGTGTGGCCGCATCG 61.880 66.667 24.28 6.12 41.21 3.84
2469 2813 1.227383 GGGATGGGATGTGTGGGTC 59.773 63.158 0.00 0.00 0.00 4.46
2516 2879 7.307514 CGTGGAGGATAGCGTTATCTATCTATC 60.308 44.444 17.35 6.57 42.71 2.08
2517 2880 6.483974 CGTGGAGGATAGCGTTATCTATCTAT 59.516 42.308 17.35 0.00 42.71 1.98
2518 2881 5.816258 CGTGGAGGATAGCGTTATCTATCTA 59.184 44.000 17.35 11.49 42.71 1.98
2519 2882 4.636648 CGTGGAGGATAGCGTTATCTATCT 59.363 45.833 17.35 7.56 42.71 1.98
2539 2902 2.370281 AGTGAACCTGCAGATACGTG 57.630 50.000 17.39 0.00 0.00 4.49
2546 2909 2.270986 GGGGCAAGTGAACCTGCAG 61.271 63.158 6.78 6.78 0.00 4.41
2594 2957 3.933861 TCTAAGGCCCTCAGGAATTTC 57.066 47.619 0.00 0.00 33.47 2.17
2646 3009 5.747197 CCAAGATGAAAATCATGCTTGCTAC 59.253 40.000 17.56 0.00 37.20 3.58
2647 3010 5.419788 ACCAAGATGAAAATCATGCTTGCTA 59.580 36.000 17.56 0.00 37.20 3.49
2653 3016 5.334724 AGGAACCAAGATGAAAATCATGC 57.665 39.130 0.00 0.00 37.20 4.06
2654 3017 8.092687 AGAAAAGGAACCAAGATGAAAATCATG 58.907 33.333 0.00 0.00 37.20 3.07
2655 3018 8.198807 AGAAAAGGAACCAAGATGAAAATCAT 57.801 30.769 0.00 0.00 40.34 2.45
2656 3019 7.506938 AGAGAAAAGGAACCAAGATGAAAATCA 59.493 33.333 0.00 0.00 0.00 2.57
2657 3020 7.890515 AGAGAAAAGGAACCAAGATGAAAATC 58.109 34.615 0.00 0.00 0.00 2.17
2658 3021 7.846101 AGAGAAAAGGAACCAAGATGAAAAT 57.154 32.000 0.00 0.00 0.00 1.82
2659 3022 7.341769 TGAAGAGAAAAGGAACCAAGATGAAAA 59.658 33.333 0.00 0.00 0.00 2.29
2660 3023 6.833416 TGAAGAGAAAAGGAACCAAGATGAAA 59.167 34.615 0.00 0.00 0.00 2.69
2662 3025 5.940617 TGAAGAGAAAAGGAACCAAGATGA 58.059 37.500 0.00 0.00 0.00 2.92
2663 3026 6.208204 ACATGAAGAGAAAAGGAACCAAGATG 59.792 38.462 0.00 0.00 0.00 2.90
2664 3027 6.310149 ACATGAAGAGAAAAGGAACCAAGAT 58.690 36.000 0.00 0.00 0.00 2.40
2665 3028 5.694995 ACATGAAGAGAAAAGGAACCAAGA 58.305 37.500 0.00 0.00 0.00 3.02
2666 3029 6.264067 AGAACATGAAGAGAAAAGGAACCAAG 59.736 38.462 0.00 0.00 0.00 3.61
2667 3030 6.129179 AGAACATGAAGAGAAAAGGAACCAA 58.871 36.000 0.00 0.00 0.00 3.67
2669 3032 6.442112 CAAGAACATGAAGAGAAAAGGAACC 58.558 40.000 0.00 0.00 0.00 3.62
2671 3034 5.010012 GCCAAGAACATGAAGAGAAAAGGAA 59.990 40.000 0.00 0.00 0.00 3.36
2672 3035 4.520492 GCCAAGAACATGAAGAGAAAAGGA 59.480 41.667 0.00 0.00 0.00 3.36
2673 3036 4.321527 GGCCAAGAACATGAAGAGAAAAGG 60.322 45.833 0.00 0.00 0.00 3.11
2674 3037 4.321527 GGGCCAAGAACATGAAGAGAAAAG 60.322 45.833 4.39 0.00 0.00 2.27
2724 3105 4.023707 ACTTCGCCTCAATCTGACAAAAAG 60.024 41.667 0.00 0.00 0.00 2.27
2772 3153 7.495279 ACAAAAATATGTGAGTTGCAAATGTGT 59.505 29.630 3.09 0.00 30.82 3.72
2795 3176 6.909550 AACATGTTTATTTGAGGGCTACAA 57.090 33.333 4.92 0.00 0.00 2.41
2798 3179 7.775053 AAGAAACATGTTTATTTGAGGGCTA 57.225 32.000 23.33 0.00 30.77 3.93
2799 3180 6.670695 AAGAAACATGTTTATTTGAGGGCT 57.329 33.333 23.33 10.21 30.77 5.19
2844 3225 8.978874 TCCACAAGTACATATGCATTCTTATT 57.021 30.769 3.54 0.00 0.00 1.40
2845 3226 8.978874 TTCCACAAGTACATATGCATTCTTAT 57.021 30.769 3.54 0.00 0.00 1.73
2846 3227 8.800370 TTTCCACAAGTACATATGCATTCTTA 57.200 30.769 3.54 0.00 0.00 2.10
2847 3228 7.701539 TTTCCACAAGTACATATGCATTCTT 57.298 32.000 3.54 0.00 0.00 2.52
2848 3229 7.611467 TCTTTTCCACAAGTACATATGCATTCT 59.389 33.333 3.54 0.00 0.00 2.40
2849 3230 7.761409 TCTTTTCCACAAGTACATATGCATTC 58.239 34.615 3.54 0.00 0.00 2.67
2850 3231 7.394359 ACTCTTTTCCACAAGTACATATGCATT 59.606 33.333 3.54 0.00 0.00 3.56
2851 3232 6.886459 ACTCTTTTCCACAAGTACATATGCAT 59.114 34.615 3.79 3.79 0.00 3.96
2852 3233 6.237901 ACTCTTTTCCACAAGTACATATGCA 58.762 36.000 1.58 0.00 0.00 3.96
2853 3234 6.743575 ACTCTTTTCCACAAGTACATATGC 57.256 37.500 1.58 0.00 0.00 3.14
2854 3235 8.873830 CAGTACTCTTTTCCACAAGTACATATG 58.126 37.037 12.50 0.00 44.12 1.78
2855 3236 7.549488 GCAGTACTCTTTTCCACAAGTACATAT 59.451 37.037 12.50 0.00 44.12 1.78
2856 3237 6.872020 GCAGTACTCTTTTCCACAAGTACATA 59.128 38.462 12.50 0.00 44.12 2.29
2857 3238 5.701290 GCAGTACTCTTTTCCACAAGTACAT 59.299 40.000 12.50 0.00 44.12 2.29
2858 3239 5.054477 GCAGTACTCTTTTCCACAAGTACA 58.946 41.667 12.50 0.00 44.12 2.90
2859 3240 5.054477 TGCAGTACTCTTTTCCACAAGTAC 58.946 41.667 0.00 3.87 42.74 2.73
2860 3241 5.284861 TGCAGTACTCTTTTCCACAAGTA 57.715 39.130 0.00 0.00 0.00 2.24
2861 3242 4.150897 TGCAGTACTCTTTTCCACAAGT 57.849 40.909 0.00 0.00 0.00 3.16
2862 3243 6.801539 TTATGCAGTACTCTTTTCCACAAG 57.198 37.500 0.00 0.00 0.00 3.16
2863 3244 7.759489 AATTATGCAGTACTCTTTTCCACAA 57.241 32.000 0.00 0.00 0.00 3.33
2864 3245 7.759489 AAATTATGCAGTACTCTTTTCCACA 57.241 32.000 0.00 0.00 0.00 4.17
2901 3282 9.643693 CAAATTTCCAGAAATTATGCAGTACTT 57.356 29.630 16.52 0.00 46.76 2.24
2902 3283 9.023962 TCAAATTTCCAGAAATTATGCAGTACT 57.976 29.630 16.52 0.00 46.76 2.73
2903 3284 9.638239 TTCAAATTTCCAGAAATTATGCAGTAC 57.362 29.630 16.52 0.00 46.76 2.73
2905 3286 9.558396 TTTTCAAATTTCCAGAAATTATGCAGT 57.442 25.926 16.52 0.42 46.76 4.40
2952 3338 2.298729 GAGTCTGAGTCAGTTGAAGCCT 59.701 50.000 19.53 5.76 32.61 4.58
2957 3343 4.832823 TGGTAATGAGTCTGAGTCAGTTGA 59.167 41.667 19.09 4.70 29.98 3.18
2959 3345 4.835615 AGTGGTAATGAGTCTGAGTCAGTT 59.164 41.667 19.09 14.83 29.98 3.16
2963 3349 7.341445 AGAATAGTGGTAATGAGTCTGAGTC 57.659 40.000 5.53 5.53 0.00 3.36
2966 3352 7.962995 AGAAGAATAGTGGTAATGAGTCTGA 57.037 36.000 0.00 0.00 0.00 3.27
2977 3363 7.835181 ACTTGCTACTACTAGAAGAATAGTGGT 59.165 37.037 0.00 7.82 45.84 4.16
2978 3364 8.228035 ACTTGCTACTACTAGAAGAATAGTGG 57.772 38.462 0.00 0.00 39.44 4.00
3013 3404 4.460948 AATGGCATCAGAAAACCATCAC 57.539 40.909 0.00 0.00 42.06 3.06
3038 3429 2.118404 CCCACAAACACACGCCACT 61.118 57.895 0.00 0.00 0.00 4.00
3039 3430 2.411290 CCCACAAACACACGCCAC 59.589 61.111 0.00 0.00 0.00 5.01
3044 3435 1.813192 CACCCACCCACAAACACAC 59.187 57.895 0.00 0.00 0.00 3.82
3084 3475 2.357517 GGTCGTGTCCCAGCAGTG 60.358 66.667 0.00 0.00 0.00 3.66
3104 3495 1.594293 CGTCATGCCCGGATACACC 60.594 63.158 0.73 0.00 0.00 4.16
3120 3511 1.810412 GCAACACTTTCTCTGTCCCGT 60.810 52.381 0.00 0.00 0.00 5.28
3195 3586 1.883084 GAAGCGGGTATCGTGGCTG 60.883 63.158 0.00 0.00 41.72 4.85
3221 3612 7.800380 TCGCAACTAGTACTAAATAATCGTAGC 59.200 37.037 3.76 0.00 0.00 3.58
3242 3633 7.566760 ACTGGAAATAATACATCAATCGCAA 57.433 32.000 0.00 0.00 0.00 4.85
3305 3696 7.216881 CGTACATACATATAAATCGGTACCGTG 59.783 40.741 32.16 22.91 40.74 4.94
3326 3717 1.876799 CTCACAAATTGGCACCGTACA 59.123 47.619 0.00 0.00 0.00 2.90
3343 3734 8.694540 TGTTTTTCCATTCATCTTTCTTTCTCA 58.305 29.630 0.00 0.00 0.00 3.27
3369 3760 0.878961 GAAACTGCAACGAGACGGGT 60.879 55.000 0.00 0.00 0.00 5.28
3370 3761 0.600255 AGAAACTGCAACGAGACGGG 60.600 55.000 0.00 0.00 0.00 5.28
3406 3797 9.886132 CCCAACATCTTACTTACTTACTTACAT 57.114 33.333 0.00 0.00 0.00 2.29
3407 3798 8.873144 ACCCAACATCTTACTTACTTACTTACA 58.127 33.333 0.00 0.00 0.00 2.41
3408 3799 9.716531 AACCCAACATCTTACTTACTTACTTAC 57.283 33.333 0.00 0.00 0.00 2.34
3411 3802 7.742767 ACAACCCAACATCTTACTTACTTACT 58.257 34.615 0.00 0.00 0.00 2.24
3412 3803 7.974482 ACAACCCAACATCTTACTTACTTAC 57.026 36.000 0.00 0.00 0.00 2.34
3413 3804 7.446013 CCAACAACCCAACATCTTACTTACTTA 59.554 37.037 0.00 0.00 0.00 2.24
3470 3871 5.982465 AACCAATCATTTTTCACAAACCG 57.018 34.783 0.00 0.00 0.00 4.44
3576 3980 3.502123 TTGTTTTCAGACGGGAAGGAT 57.498 42.857 0.00 0.00 0.00 3.24
3588 3992 7.723616 TCTCTTATCCTTGGTTCATTGTTTTCA 59.276 33.333 0.00 0.00 0.00 2.69
3589 3993 8.110860 TCTCTTATCCTTGGTTCATTGTTTTC 57.889 34.615 0.00 0.00 0.00 2.29
3594 4090 7.414984 GCTCTTTCTCTTATCCTTGGTTCATTG 60.415 40.741 0.00 0.00 0.00 2.82
3641 4143 0.322456 TCTCCAGCCCGACCATTTTG 60.322 55.000 0.00 0.00 0.00 2.44
3706 4208 7.531857 TCTCATAGTGATATTGGAGAAGTCC 57.468 40.000 0.00 0.00 44.24 3.85
3713 4215 7.229306 GGTTTTGCATCTCATAGTGATATTGGA 59.771 37.037 0.00 0.00 0.00 3.53
3831 4342 5.877012 CCCTCATCCATGTAGTATATGTTGC 59.123 44.000 6.20 0.00 0.00 4.17
3993 4521 4.868171 TCCGAGTGGATATTTTGAACTTCG 59.132 41.667 0.00 0.00 40.17 3.79
3997 4525 6.737254 TTCTTCCGAGTGGATATTTTGAAC 57.263 37.500 0.00 0.00 45.91 3.18
3998 4526 7.938140 ATTTCTTCCGAGTGGATATTTTGAA 57.062 32.000 0.00 0.00 45.91 2.69
4014 4542 8.966069 AGTTCTAATAACAGCCTATTTCTTCC 57.034 34.615 0.00 0.00 0.00 3.46
4031 4559 9.953697 GAGTACTTACGAATCATGAGTTCTAAT 57.046 33.333 0.09 0.00 0.00 1.73
4034 4562 6.183360 GGGAGTACTTACGAATCATGAGTTCT 60.183 42.308 0.09 0.00 0.00 3.01
4046 4574 2.359900 GAACGGAGGGAGTACTTACGA 58.640 52.381 4.69 0.00 0.00 3.43
4047 4575 1.403323 GGAACGGAGGGAGTACTTACG 59.597 57.143 0.00 0.00 0.00 3.18
4055 4583 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4056 4584 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4057 4585 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4058 4586 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4059 4587 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4060 4588 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4061 4589 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4074 4602 9.354673 ACCATTTGAAATCTCTAGAAAGACAAA 57.645 29.630 0.00 4.41 0.00 2.83
4075 4603 8.924511 ACCATTTGAAATCTCTAGAAAGACAA 57.075 30.769 0.00 0.00 0.00 3.18
4076 4604 8.156820 TGACCATTTGAAATCTCTAGAAAGACA 58.843 33.333 0.00 0.00 0.00 3.41
4077 4605 8.447053 GTGACCATTTGAAATCTCTAGAAAGAC 58.553 37.037 0.00 0.00 0.00 3.01
4078 4606 7.607991 GGTGACCATTTGAAATCTCTAGAAAGA 59.392 37.037 0.00 0.00 0.00 2.52
4079 4607 7.391554 TGGTGACCATTTGAAATCTCTAGAAAG 59.608 37.037 0.00 0.00 0.00 2.62
4080 4608 7.174946 GTGGTGACCATTTGAAATCTCTAGAAA 59.825 37.037 7.94 0.00 35.28 2.52
4081 4609 6.655003 GTGGTGACCATTTGAAATCTCTAGAA 59.345 38.462 7.94 0.00 35.28 2.10
4082 4610 6.173339 GTGGTGACCATTTGAAATCTCTAGA 58.827 40.000 7.94 0.00 35.28 2.43
4083 4611 5.939883 TGTGGTGACCATTTGAAATCTCTAG 59.060 40.000 7.94 0.00 35.28 2.43
4084 4612 5.875224 TGTGGTGACCATTTGAAATCTCTA 58.125 37.500 7.94 0.00 35.28 2.43
4085 4613 4.728772 TGTGGTGACCATTTGAAATCTCT 58.271 39.130 7.94 0.00 35.28 3.10
4086 4614 5.649782 ATGTGGTGACCATTTGAAATCTC 57.350 39.130 7.94 0.00 35.28 2.75
4087 4615 5.123820 CGTATGTGGTGACCATTTGAAATCT 59.876 40.000 7.94 0.00 35.28 2.40
4088 4616 5.331902 CGTATGTGGTGACCATTTGAAATC 58.668 41.667 7.94 0.00 35.28 2.17
4089 4617 4.157656 CCGTATGTGGTGACCATTTGAAAT 59.842 41.667 7.94 0.00 35.28 2.17
4090 4618 3.504134 CCGTATGTGGTGACCATTTGAAA 59.496 43.478 7.94 0.00 35.28 2.69
4091 4619 3.078097 CCGTATGTGGTGACCATTTGAA 58.922 45.455 7.94 0.00 35.28 2.69
4092 4620 2.303311 TCCGTATGTGGTGACCATTTGA 59.697 45.455 7.94 0.00 35.28 2.69
4093 4621 2.705730 TCCGTATGTGGTGACCATTTG 58.294 47.619 7.94 0.00 35.28 2.32
4094 4622 3.278574 CATCCGTATGTGGTGACCATTT 58.721 45.455 7.94 0.45 35.28 2.32
4095 4623 2.238646 ACATCCGTATGTGGTGACCATT 59.761 45.455 7.94 0.86 44.79 3.16
4096 4624 1.837439 ACATCCGTATGTGGTGACCAT 59.163 47.619 7.94 0.00 44.79 3.55
4097 4625 1.271856 ACATCCGTATGTGGTGACCA 58.728 50.000 0.00 0.00 44.79 4.02
4098 4626 3.746045 ATACATCCGTATGTGGTGACC 57.254 47.619 3.56 0.00 45.99 4.02
4099 4627 7.094506 TGTCTATATACATCCGTATGTGGTGAC 60.095 40.741 3.56 5.93 45.99 3.67
4100 4628 6.943718 TGTCTATATACATCCGTATGTGGTGA 59.056 38.462 3.56 0.00 45.99 4.02
4101 4629 7.153217 TGTCTATATACATCCGTATGTGGTG 57.847 40.000 3.56 0.00 45.99 4.17
4102 4630 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
4131 4659 9.973450 GAGCAAAATGAGTGAATCTATACTCTA 57.027 33.333 0.00 0.00 42.86 2.43
4132 4660 7.930865 GGAGCAAAATGAGTGAATCTATACTCT 59.069 37.037 0.00 0.00 42.86 3.24
4133 4661 7.095857 CGGAGCAAAATGAGTGAATCTATACTC 60.096 40.741 0.00 0.00 42.77 2.59
4134 4662 6.703607 CGGAGCAAAATGAGTGAATCTATACT 59.296 38.462 0.00 0.00 0.00 2.12
4135 4663 6.480320 ACGGAGCAAAATGAGTGAATCTATAC 59.520 38.462 0.00 0.00 0.00 1.47
4136 4664 6.582636 ACGGAGCAAAATGAGTGAATCTATA 58.417 36.000 0.00 0.00 0.00 1.31
4137 4665 5.431765 ACGGAGCAAAATGAGTGAATCTAT 58.568 37.500 0.00 0.00 0.00 1.98
4138 4666 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
4139 4667 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
4140 4668 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
4141 4669 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4142 4670 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4143 4671 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4144 4672 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4145 4673 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4146 4674 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4147 4675 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4148 4676 4.034048 GGTGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
4149 4677 4.189231 GGTGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
4150 4678 3.007074 TGGTGACTACATACGGAGCAAAA 59.993 43.478 0.00 0.00 0.00 2.44
4151 4679 2.563620 TGGTGACTACATACGGAGCAAA 59.436 45.455 0.00 0.00 0.00 3.68
4152 4680 2.172679 TGGTGACTACATACGGAGCAA 58.827 47.619 0.00 0.00 0.00 3.91
4153 4681 1.842052 TGGTGACTACATACGGAGCA 58.158 50.000 0.00 0.00 0.00 4.26
4154 4682 3.454371 AATGGTGACTACATACGGAGC 57.546 47.619 0.00 0.00 0.00 4.70
4155 4683 5.006153 TCAAATGGTGACTACATACGGAG 57.994 43.478 0.00 0.00 0.00 4.63
4156 4684 5.408880 TTCAAATGGTGACTACATACGGA 57.591 39.130 0.00 0.00 35.39 4.69
4157 4685 5.163794 GGTTTCAAATGGTGACTACATACGG 60.164 44.000 0.00 0.00 35.39 4.02
4158 4686 5.642063 AGGTTTCAAATGGTGACTACATACG 59.358 40.000 0.00 0.00 35.39 3.06
4159 4687 6.879458 AGAGGTTTCAAATGGTGACTACATAC 59.121 38.462 0.00 0.00 35.39 2.39
4160 4688 7.016153 AGAGGTTTCAAATGGTGACTACATA 57.984 36.000 0.00 0.00 35.39 2.29
4161 4689 5.880901 AGAGGTTTCAAATGGTGACTACAT 58.119 37.500 0.00 0.00 35.39 2.29
4162 4690 5.304686 AGAGGTTTCAAATGGTGACTACA 57.695 39.130 0.00 0.00 35.39 2.74
4163 4691 7.739498 TTTAGAGGTTTCAAATGGTGACTAC 57.261 36.000 0.00 0.00 35.39 2.73
4164 4692 8.754991 TTTTTAGAGGTTTCAAATGGTGACTA 57.245 30.769 0.00 0.00 35.39 2.59
4165 4693 7.559897 TCTTTTTAGAGGTTTCAAATGGTGACT 59.440 33.333 0.00 0.00 35.39 3.41
4166 4694 7.648112 GTCTTTTTAGAGGTTTCAAATGGTGAC 59.352 37.037 0.00 0.00 35.39 3.67
4167 4695 7.340743 TGTCTTTTTAGAGGTTTCAAATGGTGA 59.659 33.333 0.00 0.00 0.00 4.02
4168 4696 7.488322 TGTCTTTTTAGAGGTTTCAAATGGTG 58.512 34.615 0.00 0.00 0.00 4.17
4169 4697 7.654022 TGTCTTTTTAGAGGTTTCAAATGGT 57.346 32.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.