Multiple sequence alignment - TraesCS4A01G228800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G228800 chr4A 100.000 3554 0 0 1 3554 537275101 537271548 0.000000e+00 6564.0
1 TraesCS4A01G228800 chr4A 89.366 1119 112 5 1019 2136 537183984 537182872 0.000000e+00 1400.0
2 TraesCS4A01G228800 chr4D 91.045 2468 122 45 284 2722 58945485 58947882 0.000000e+00 3241.0
3 TraesCS4A01G228800 chr4D 89.276 1119 113 5 1019 2136 59412339 59413451 0.000000e+00 1395.0
4 TraesCS4A01G228800 chr4D 83.260 681 83 11 2897 3552 215455311 215455985 6.570000e-167 597.0
5 TraesCS4A01G228800 chr4D 90.213 235 10 7 1577 1803 59024182 59024411 9.650000e-76 294.0
6 TraesCS4A01G228800 chr4D 87.866 239 27 2 2 239 58945240 58945477 2.700000e-71 279.0
7 TraesCS4A01G228800 chr4D 100.000 36 0 0 2026 2061 59024011 59024046 2.290000e-07 67.6
8 TraesCS4A01G228800 chr4B 93.529 1947 95 19 588 2516 88405209 88403276 0.000000e+00 2868.0
9 TraesCS4A01G228800 chr4B 89.455 1119 111 6 1019 2136 88156535 88155423 0.000000e+00 1406.0
10 TraesCS4A01G228800 chr4B 83.234 501 62 10 3063 3549 237140674 237141166 1.170000e-119 440.0
11 TraesCS4A01G228800 chr7A 82.143 700 94 12 2880 3552 730767529 730766834 3.980000e-159 571.0
12 TraesCS4A01G228800 chr1B 82.143 672 85 15 2897 3552 566988413 566989065 8.680000e-151 544.0
13 TraesCS4A01G228800 chr1B 81.009 674 96 12 2907 3552 444347492 444348161 1.140000e-139 507.0
14 TraesCS4A01G228800 chr1B 82.834 501 60 10 3070 3552 38637257 38636765 3.280000e-115 425.0
15 TraesCS4A01G228800 chr1D 81.460 685 87 17 2898 3554 420011205 420011877 3.140000e-145 525.0
16 TraesCS4A01G228800 chr1D 83.832 501 55 10 3070 3552 22589681 22589189 1.500000e-123 453.0
17 TraesCS4A01G228800 chr2B 84.055 508 61 14 3063 3551 110685802 110685296 4.150000e-129 472.0
18 TraesCS4A01G228800 chr2B 78.279 488 72 16 3085 3544 200086140 200085659 2.090000e-72 283.0
19 TraesCS4A01G228800 chr3B 79.855 690 90 16 2909 3552 133380055 133379369 3.230000e-125 459.0
20 TraesCS4A01G228800 chr3B 85.922 206 28 1 3348 3552 808488497 808488702 5.970000e-53 219.0
21 TraesCS4A01G228800 chr6D 81.880 585 67 15 2905 3456 456119942 456120520 1.160000e-124 457.0
22 TraesCS4A01G228800 chr2D 83.669 496 55 11 3078 3552 432865795 432865305 9.050000e-121 444.0
23 TraesCS4A01G228800 chr6B 79.760 499 72 11 3063 3535 707601839 707602334 5.690000e-88 335.0
24 TraesCS4A01G228800 chr5B 79.880 333 57 5 1789 2114 421719383 421719054 5.930000e-58 235.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G228800 chr4A 537271548 537275101 3553 True 6564 6564 100.0000 1 3554 1 chr4A.!!$R2 3553
1 TraesCS4A01G228800 chr4A 537182872 537183984 1112 True 1400 1400 89.3660 1019 2136 1 chr4A.!!$R1 1117
2 TraesCS4A01G228800 chr4D 58945240 58947882 2642 False 1760 3241 89.4555 2 2722 2 chr4D.!!$F3 2720
3 TraesCS4A01G228800 chr4D 59412339 59413451 1112 False 1395 1395 89.2760 1019 2136 1 chr4D.!!$F1 1117
4 TraesCS4A01G228800 chr4D 215455311 215455985 674 False 597 597 83.2600 2897 3552 1 chr4D.!!$F2 655
5 TraesCS4A01G228800 chr4B 88403276 88405209 1933 True 2868 2868 93.5290 588 2516 1 chr4B.!!$R2 1928
6 TraesCS4A01G228800 chr4B 88155423 88156535 1112 True 1406 1406 89.4550 1019 2136 1 chr4B.!!$R1 1117
7 TraesCS4A01G228800 chr7A 730766834 730767529 695 True 571 571 82.1430 2880 3552 1 chr7A.!!$R1 672
8 TraesCS4A01G228800 chr1B 566988413 566989065 652 False 544 544 82.1430 2897 3552 1 chr1B.!!$F2 655
9 TraesCS4A01G228800 chr1B 444347492 444348161 669 False 507 507 81.0090 2907 3552 1 chr1B.!!$F1 645
10 TraesCS4A01G228800 chr1D 420011205 420011877 672 False 525 525 81.4600 2898 3554 1 chr1D.!!$F1 656
11 TraesCS4A01G228800 chr2B 110685296 110685802 506 True 472 472 84.0550 3063 3551 1 chr2B.!!$R1 488
12 TraesCS4A01G228800 chr3B 133379369 133380055 686 True 459 459 79.8550 2909 3552 1 chr3B.!!$R1 643
13 TraesCS4A01G228800 chr6D 456119942 456120520 578 False 457 457 81.8800 2905 3456 1 chr6D.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
264 266 0.036483 TGTGACATGACCGATGTGGG 60.036 55.0 0.00 0.0 45.90 4.61 F
356 358 0.037326 CACCGCTAAGCAAGAGTGGA 60.037 55.0 16.37 0.0 45.82 4.02 F
906 912 0.247460 CGATGTGTCCTCAGCTCCAA 59.753 55.0 0.00 0.0 0.00 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2232 2256 0.102481 TCTTCGCCTTCTATGCCGAC 59.898 55.0 0.00 0.0 0.00 4.79 R
2233 2257 0.385751 CTCTTCGCCTTCTATGCCGA 59.614 55.0 0.00 0.0 0.00 5.54 R
2724 2774 0.025513 CGTAGCTGCGCTTGACATTC 59.974 55.0 12.24 0.0 40.44 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 2.125350 CTCTCTGCCAAGGCGGTC 60.125 66.667 18.80 0.00 46.77 4.79
82 83 4.491676 GTCGTCATGCAGAAAAGGTAGTA 58.508 43.478 0.00 0.00 0.00 1.82
85 86 6.755141 GTCGTCATGCAGAAAAGGTAGTAATA 59.245 38.462 0.00 0.00 0.00 0.98
88 89 7.048512 GTCATGCAGAAAAGGTAGTAATAGGT 58.951 38.462 0.00 0.00 0.00 3.08
156 157 1.699634 CCTCCTTCTCAACCCACTCAA 59.300 52.381 0.00 0.00 0.00 3.02
160 161 1.873591 CTTCTCAACCCACTCAAACCG 59.126 52.381 0.00 0.00 0.00 4.44
177 178 0.107654 CCGTTTCCACATCCTCTCCC 60.108 60.000 0.00 0.00 0.00 4.30
178 179 0.460284 CGTTTCCACATCCTCTCCCG 60.460 60.000 0.00 0.00 0.00 5.14
189 190 1.900486 TCCTCTCCCGAAACTTTCTCC 59.100 52.381 0.12 0.00 0.00 3.71
195 196 0.602905 CCGAAACTTTCTCCTGGCGT 60.603 55.000 0.12 0.00 0.00 5.68
197 198 1.872237 CGAAACTTTCTCCTGGCGTGA 60.872 52.381 0.12 0.00 0.00 4.35
214 215 3.732471 GCGTGATCTTCTTTAGTCTCGCT 60.732 47.826 11.76 0.00 44.95 4.93
224 225 0.249398 TAGTCTCGCTGGGAAAAGCC 59.751 55.000 0.00 0.00 40.23 4.35
226 227 0.606673 GTCTCGCTGGGAAAAGCCTT 60.607 55.000 0.00 0.00 40.23 4.35
227 228 0.606401 TCTCGCTGGGAAAAGCCTTG 60.606 55.000 0.00 0.00 40.23 3.61
253 255 3.190849 CTCGCCCGCTGTGACATG 61.191 66.667 0.00 0.00 0.00 3.21
254 256 3.647649 CTCGCCCGCTGTGACATGA 62.648 63.158 0.00 0.00 0.00 3.07
255 257 3.490759 CGCCCGCTGTGACATGAC 61.491 66.667 0.00 0.00 0.00 3.06
256 258 3.127533 GCCCGCTGTGACATGACC 61.128 66.667 0.00 0.00 0.00 4.02
257 259 2.815211 CCCGCTGTGACATGACCG 60.815 66.667 0.00 0.00 0.00 4.79
258 260 2.261361 CCGCTGTGACATGACCGA 59.739 61.111 0.00 0.00 0.00 4.69
259 261 1.153568 CCGCTGTGACATGACCGAT 60.154 57.895 0.00 0.00 0.00 4.18
260 262 1.423721 CCGCTGTGACATGACCGATG 61.424 60.000 0.00 0.00 38.15 3.84
262 264 0.723414 GCTGTGACATGACCGATGTG 59.277 55.000 0.00 0.00 45.90 3.21
263 265 1.362768 CTGTGACATGACCGATGTGG 58.637 55.000 0.00 0.00 45.90 4.17
264 266 0.036483 TGTGACATGACCGATGTGGG 60.036 55.000 0.00 0.00 45.90 4.61
265 267 0.744414 GTGACATGACCGATGTGGGG 60.744 60.000 0.00 0.00 45.90 4.96
266 268 1.198094 TGACATGACCGATGTGGGGT 61.198 55.000 0.00 0.00 45.90 4.95
267 269 0.744414 GACATGACCGATGTGGGGTG 60.744 60.000 0.00 0.00 45.90 4.61
268 270 1.198094 ACATGACCGATGTGGGGTGA 61.198 55.000 0.00 0.00 44.12 4.02
269 271 0.462581 CATGACCGATGTGGGGTGAG 60.463 60.000 0.00 0.00 44.64 3.51
270 272 0.909610 ATGACCGATGTGGGGTGAGT 60.910 55.000 0.00 0.00 44.64 3.41
271 273 1.079127 GACCGATGTGGGGTGAGTG 60.079 63.158 0.00 0.00 44.64 3.51
272 274 1.827399 GACCGATGTGGGGTGAGTGT 61.827 60.000 0.00 0.00 44.64 3.55
273 275 1.375908 CCGATGTGGGGTGAGTGTG 60.376 63.158 0.00 0.00 0.00 3.82
274 276 1.375908 CGATGTGGGGTGAGTGTGG 60.376 63.158 0.00 0.00 0.00 4.17
275 277 1.675641 GATGTGGGGTGAGTGTGGC 60.676 63.158 0.00 0.00 0.00 5.01
276 278 3.551496 ATGTGGGGTGAGTGTGGCG 62.551 63.158 0.00 0.00 0.00 5.69
281 283 4.760047 GGTGAGTGTGGCGGCGAT 62.760 66.667 12.98 0.00 0.00 4.58
282 284 3.490759 GTGAGTGTGGCGGCGATG 61.491 66.667 12.98 0.00 0.00 3.84
298 300 1.759201 CGATGGGGAAGATGAGGGAGA 60.759 57.143 0.00 0.00 0.00 3.71
315 317 2.589442 AAGTGACGCCCGCGAAAA 60.589 55.556 17.16 0.00 42.83 2.29
325 327 0.108138 CCCGCGAAAAGAGGAGATGT 60.108 55.000 8.23 0.00 43.02 3.06
331 333 3.615110 GCGAAAAGAGGAGATGTGTGAGA 60.615 47.826 0.00 0.00 0.00 3.27
332 334 4.172505 CGAAAAGAGGAGATGTGTGAGAG 58.827 47.826 0.00 0.00 0.00 3.20
340 342 0.674895 GATGTGTGAGAGGTGGCACC 60.675 60.000 29.32 29.32 38.99 5.01
356 358 0.037326 CACCGCTAAGCAAGAGTGGA 60.037 55.000 16.37 0.00 45.82 4.02
358 360 0.741221 CCGCTAAGCAAGAGTGGACC 60.741 60.000 6.32 0.00 45.82 4.46
366 368 3.535561 AGCAAGAGTGGACCGATTTATG 58.464 45.455 0.00 0.00 0.00 1.90
401 403 2.358247 CCAGCGGTAAACGTGGCT 60.358 61.111 0.00 0.00 46.52 4.75
403 405 2.738480 AGCGGTAAACGTGGCTGA 59.262 55.556 0.00 0.00 46.52 4.26
413 415 0.604243 ACGTGGCTGAATTTGGCGTA 60.604 50.000 0.00 0.00 0.00 4.42
418 420 1.926510 GGCTGAATTTGGCGTATTTGC 59.073 47.619 0.00 0.00 0.00 3.68
419 421 2.605030 GCTGAATTTGGCGTATTTGCA 58.395 42.857 0.00 0.00 36.28 4.08
430 432 2.783284 GCGTATTTGCATGAATTCCGTG 59.217 45.455 2.27 3.37 34.90 4.94
446 448 0.594796 CGTGCTTTTGTTGGACCTGC 60.595 55.000 0.00 0.00 0.00 4.85
451 453 2.609002 GCTTTTGTTGGACCTGCTTTTG 59.391 45.455 0.00 0.00 0.00 2.44
459 461 2.108075 TGGACCTGCTTTTGGAATCTCA 59.892 45.455 0.00 0.00 0.00 3.27
463 465 5.143376 ACCTGCTTTTGGAATCTCAAATG 57.857 39.130 0.00 0.00 36.63 2.32
470 472 1.818060 TGGAATCTCAAATGCCAACCG 59.182 47.619 0.00 0.00 0.00 4.44
491 493 4.444536 CGGAAGGTTATTACGGGAATTCA 58.555 43.478 7.93 0.00 0.00 2.57
500 502 8.985805 GGTTATTACGGGAATTCAGTACTTATG 58.014 37.037 7.93 0.00 0.00 1.90
505 507 5.602978 ACGGGAATTCAGTACTTATGGAGAT 59.397 40.000 7.93 0.00 0.00 2.75
578 580 0.317479 AGTACACACGCTTGGGAGAC 59.683 55.000 0.00 0.00 0.00 3.36
636 638 1.281867 AGATGGAAAATGGAGGACGCA 59.718 47.619 0.00 0.00 0.00 5.24
656 658 2.098831 GCGCGTGGTCTAGGGTTTC 61.099 63.158 8.43 0.00 0.00 2.78
725 728 9.776158 ATTTTATATGAAAATGCGTTACGAACA 57.224 25.926 9.62 0.00 0.00 3.18
731 734 4.623122 AAATGCGTTACGAACAAAATGC 57.377 36.364 9.62 0.00 37.97 3.56
761 764 3.034721 ACAAAAGGTTCGATCGTAGCA 57.965 42.857 22.94 0.00 0.00 3.49
771 774 5.484958 GTTCGATCGTAGCAAAGAATCAAG 58.515 41.667 15.94 0.00 0.00 3.02
870 874 3.721035 GCCAGTGCACTGAATTTTCTTT 58.279 40.909 41.50 4.59 46.59 2.52
880 884 9.814899 TGCACTGAATTTTCTTTTCTTCAATAA 57.185 25.926 0.00 0.00 0.00 1.40
906 912 0.247460 CGATGTGTCCTCAGCTCCAA 59.753 55.000 0.00 0.00 0.00 3.53
944 950 0.468226 CACCCCCAGCGCTCTATTTA 59.532 55.000 7.13 0.00 0.00 1.40
958 964 3.815401 CTCTATTTAATGCCACCCTTCCG 59.185 47.826 0.00 0.00 0.00 4.30
996 1002 0.466189 CATCTCCATTCCCAACCCCG 60.466 60.000 0.00 0.00 0.00 5.73
1338 1351 2.029369 TACAACGTCACCACCGGC 59.971 61.111 0.00 0.00 0.00 6.13
2063 2076 2.052157 GTTCGACGTCAAGTCCAAGAG 58.948 52.381 17.16 0.00 46.92 2.85
2216 2240 2.188994 GCGGAAGGCAGAGATGCT 59.811 61.111 0.00 0.00 42.87 3.79
2232 2256 0.380733 TGCTAGTAGTCGACGGCATG 59.619 55.000 10.46 3.35 36.97 4.06
2233 2257 0.381089 GCTAGTAGTCGACGGCATGT 59.619 55.000 10.46 0.00 33.71 3.21
2234 2258 1.597445 GCTAGTAGTCGACGGCATGTC 60.597 57.143 10.46 0.00 44.53 3.06
2295 2319 1.198637 GTGTTCATCTGCCTCTGTTGC 59.801 52.381 0.00 0.00 0.00 4.17
2296 2320 1.202794 TGTTCATCTGCCTCTGTTGCA 60.203 47.619 0.00 0.00 37.17 4.08
2317 2341 3.152341 AGTTGCAGAACTGAATTCCTGG 58.848 45.455 2.27 0.00 41.12 4.45
2329 2353 3.262151 TGAATTCCTGGTCGTATGGTTGA 59.738 43.478 2.27 0.00 0.00 3.18
2342 2366 4.875536 CGTATGGTTGAACTGATGGATCAA 59.124 41.667 0.00 0.00 36.18 2.57
2418 2443 2.166829 TGGCAAGCAACATTTATCCGT 58.833 42.857 0.00 0.00 0.00 4.69
2421 2446 3.487544 GGCAAGCAACATTTATCCGTCTC 60.488 47.826 0.00 0.00 0.00 3.36
2424 2449 3.798202 AGCAACATTTATCCGTCTCCTC 58.202 45.455 0.00 0.00 0.00 3.71
2440 2465 6.395629 CGTCTCCTCCAGTCAAAAATACTTA 58.604 40.000 0.00 0.00 0.00 2.24
2441 2466 6.310711 CGTCTCCTCCAGTCAAAAATACTTAC 59.689 42.308 0.00 0.00 0.00 2.34
2442 2467 6.310711 GTCTCCTCCAGTCAAAAATACTTACG 59.689 42.308 0.00 0.00 0.00 3.18
2443 2468 6.014840 TCTCCTCCAGTCAAAAATACTTACGT 60.015 38.462 0.00 0.00 0.00 3.57
2444 2469 6.527423 TCCTCCAGTCAAAAATACTTACGTT 58.473 36.000 0.00 0.00 0.00 3.99
2472 2497 4.111916 CAGGTAAAAACAGGCAAACACTG 58.888 43.478 0.00 0.00 41.64 3.66
2481 2506 1.358759 GCAAACACTGTGGGTTCGG 59.641 57.895 13.09 0.00 0.00 4.30
2512 2543 8.321353 ACATCTCATGAGAGTAACAACCAAATA 58.679 33.333 28.26 2.00 42.66 1.40
2516 2547 6.318648 TCATGAGAGTAACAACCAAATATGCC 59.681 38.462 0.00 0.00 0.00 4.40
2517 2548 5.815581 TGAGAGTAACAACCAAATATGCCT 58.184 37.500 0.00 0.00 0.00 4.75
2519 2550 6.719370 TGAGAGTAACAACCAAATATGCCTTT 59.281 34.615 0.00 0.00 0.00 3.11
2520 2551 6.924111 AGAGTAACAACCAAATATGCCTTTG 58.076 36.000 0.00 0.00 36.17 2.77
2530 2565 5.335583 CCAAATATGCCTTTGAGAAACACGA 60.336 40.000 0.00 0.00 38.17 4.35
2532 2567 5.957842 ATATGCCTTTGAGAAACACGAAA 57.042 34.783 0.00 0.00 0.00 3.46
2534 2569 4.647424 TGCCTTTGAGAAACACGAAAAT 57.353 36.364 0.00 0.00 0.00 1.82
2548 2583 5.318349 ACACGAAAATATAAAGCGAAACGG 58.682 37.500 0.00 0.00 0.00 4.44
2550 2585 6.183360 ACACGAAAATATAAAGCGAAACGGAT 60.183 34.615 0.00 0.00 0.00 4.18
2551 2586 6.685403 CACGAAAATATAAAGCGAAACGGATT 59.315 34.615 0.00 0.00 0.00 3.01
2552 2587 6.903479 ACGAAAATATAAAGCGAAACGGATTC 59.097 34.615 0.00 0.00 34.52 2.52
2555 2590 8.614994 AAAATATAAAGCGAAACGGATTCTTG 57.385 30.769 0.00 0.00 35.79 3.02
2559 2594 0.247301 GCGAAACGGATTCTTGAGCG 60.247 55.000 0.00 0.00 35.79 5.03
2560 2595 1.068474 CGAAACGGATTCTTGAGCGT 58.932 50.000 0.00 0.00 35.79 5.07
2561 2596 1.459592 CGAAACGGATTCTTGAGCGTT 59.540 47.619 0.00 0.00 35.79 4.84
2562 2597 2.664568 CGAAACGGATTCTTGAGCGTTA 59.335 45.455 0.00 0.00 35.79 3.18
2563 2598 3.241678 CGAAACGGATTCTTGAGCGTTAG 60.242 47.826 0.00 0.00 35.79 2.34
2564 2599 1.641577 ACGGATTCTTGAGCGTTAGC 58.358 50.000 0.00 0.00 45.58 3.09
2677 2727 3.434940 AGTAAATCCTCCGTGGCTTTT 57.565 42.857 0.15 0.54 35.88 2.27
2722 2772 1.525941 CGGTGTCCGGTTGGTTTAAT 58.474 50.000 0.00 0.00 44.15 1.40
2723 2773 1.198178 CGGTGTCCGGTTGGTTTAATG 59.802 52.381 0.00 0.00 44.15 1.90
2724 2774 1.542472 GGTGTCCGGTTGGTTTAATGG 59.458 52.381 0.00 0.00 36.30 3.16
2725 2775 2.506444 GTGTCCGGTTGGTTTAATGGA 58.494 47.619 0.00 0.00 36.30 3.41
2726 2776 2.885894 GTGTCCGGTTGGTTTAATGGAA 59.114 45.455 0.00 0.00 36.30 3.53
2727 2777 3.508402 GTGTCCGGTTGGTTTAATGGAAT 59.492 43.478 0.00 0.00 36.30 3.01
2728 2778 3.508012 TGTCCGGTTGGTTTAATGGAATG 59.492 43.478 0.00 0.00 36.30 2.67
2729 2779 3.508402 GTCCGGTTGGTTTAATGGAATGT 59.492 43.478 0.00 0.00 36.30 2.71
2730 2780 3.759618 TCCGGTTGGTTTAATGGAATGTC 59.240 43.478 0.00 0.00 36.30 3.06
2731 2781 3.508012 CCGGTTGGTTTAATGGAATGTCA 59.492 43.478 0.00 0.00 0.00 3.58
2732 2782 4.021894 CCGGTTGGTTTAATGGAATGTCAA 60.022 41.667 0.00 0.00 0.00 3.18
2733 2783 5.160641 CGGTTGGTTTAATGGAATGTCAAG 58.839 41.667 0.00 0.00 0.00 3.02
2734 2784 4.929211 GGTTGGTTTAATGGAATGTCAAGC 59.071 41.667 0.00 0.00 0.00 4.01
2735 2785 4.433186 TGGTTTAATGGAATGTCAAGCG 57.567 40.909 0.00 0.00 0.00 4.68
2736 2786 3.179048 GGTTTAATGGAATGTCAAGCGC 58.821 45.455 0.00 0.00 0.00 5.92
2737 2787 3.366883 GGTTTAATGGAATGTCAAGCGCA 60.367 43.478 11.47 0.00 0.00 6.09
2738 2788 3.763097 TTAATGGAATGTCAAGCGCAG 57.237 42.857 11.47 0.72 0.00 5.18
2752 2802 2.373938 CGCAGCTACGAAAAGAGGG 58.626 57.895 0.00 0.00 34.06 4.30
2753 2803 1.696832 CGCAGCTACGAAAAGAGGGC 61.697 60.000 0.00 0.00 34.06 5.19
2754 2804 0.673644 GCAGCTACGAAAAGAGGGCA 60.674 55.000 0.00 0.00 0.00 5.36
2755 2805 1.808411 CAGCTACGAAAAGAGGGCAA 58.192 50.000 0.00 0.00 0.00 4.52
2756 2806 2.151202 CAGCTACGAAAAGAGGGCAAA 58.849 47.619 0.00 0.00 0.00 3.68
2757 2807 2.160417 CAGCTACGAAAAGAGGGCAAAG 59.840 50.000 0.00 0.00 0.00 2.77
2758 2808 1.468914 GCTACGAAAAGAGGGCAAAGG 59.531 52.381 0.00 0.00 0.00 3.11
2759 2809 1.468914 CTACGAAAAGAGGGCAAAGGC 59.531 52.381 0.00 0.00 40.13 4.35
2760 2810 1.210155 CGAAAAGAGGGCAAAGGCG 59.790 57.895 0.00 0.00 42.47 5.52
2761 2811 1.234615 CGAAAAGAGGGCAAAGGCGA 61.235 55.000 0.00 0.00 42.47 5.54
2762 2812 1.177401 GAAAAGAGGGCAAAGGCGAT 58.823 50.000 0.00 0.00 42.47 4.58
2763 2813 1.133216 GAAAAGAGGGCAAAGGCGATC 59.867 52.381 0.00 0.00 42.47 3.69
2764 2814 1.026718 AAAGAGGGCAAAGGCGATCG 61.027 55.000 11.69 11.69 42.47 3.69
2765 2815 2.125106 GAGGGCAAAGGCGATCGT 60.125 61.111 17.81 0.00 42.47 3.73
2766 2816 2.436646 AGGGCAAAGGCGATCGTG 60.437 61.111 17.81 8.05 42.47 4.35
2767 2817 2.435938 GGGCAAAGGCGATCGTGA 60.436 61.111 17.81 0.00 42.47 4.35
2768 2818 2.038269 GGGCAAAGGCGATCGTGAA 61.038 57.895 17.81 0.00 42.47 3.18
2769 2819 1.582610 GGGCAAAGGCGATCGTGAAA 61.583 55.000 17.81 0.00 42.47 2.69
2770 2820 0.239879 GGCAAAGGCGATCGTGAAAA 59.760 50.000 17.81 0.00 42.47 2.29
2771 2821 1.327507 GCAAAGGCGATCGTGAAAAC 58.672 50.000 17.81 0.00 0.00 2.43
2772 2822 1.963747 CAAAGGCGATCGTGAAAACC 58.036 50.000 17.81 8.04 0.00 3.27
2773 2823 1.535462 CAAAGGCGATCGTGAAAACCT 59.465 47.619 17.81 10.39 0.00 3.50
2774 2824 2.739913 CAAAGGCGATCGTGAAAACCTA 59.260 45.455 17.81 0.00 0.00 3.08
2775 2825 2.295253 AGGCGATCGTGAAAACCTAG 57.705 50.000 17.81 0.00 0.00 3.02
2776 2826 0.651031 GGCGATCGTGAAAACCTAGC 59.349 55.000 17.81 0.00 0.00 3.42
2777 2827 0.651031 GCGATCGTGAAAACCTAGCC 59.349 55.000 17.81 0.00 0.00 3.93
2778 2828 0.921347 CGATCGTGAAAACCTAGCCG 59.079 55.000 7.03 0.00 0.00 5.52
2779 2829 0.651031 GATCGTGAAAACCTAGCCGC 59.349 55.000 0.00 0.00 0.00 6.53
2780 2830 0.743345 ATCGTGAAAACCTAGCCGCC 60.743 55.000 0.00 0.00 0.00 6.13
2781 2831 1.375523 CGTGAAAACCTAGCCGCCT 60.376 57.895 0.00 0.00 0.00 5.52
2782 2832 1.359459 CGTGAAAACCTAGCCGCCTC 61.359 60.000 0.00 0.00 0.00 4.70
2783 2833 0.036294 GTGAAAACCTAGCCGCCTCT 60.036 55.000 0.00 0.00 0.00 3.69
2784 2834 0.249398 TGAAAACCTAGCCGCCTCTC 59.751 55.000 0.00 0.00 0.00 3.20
2785 2835 0.537653 GAAAACCTAGCCGCCTCTCT 59.462 55.000 0.00 0.00 0.00 3.10
2786 2836 0.984995 AAAACCTAGCCGCCTCTCTT 59.015 50.000 0.00 0.00 0.00 2.85
2787 2837 0.984995 AAACCTAGCCGCCTCTCTTT 59.015 50.000 0.00 0.00 0.00 2.52
2788 2838 0.537653 AACCTAGCCGCCTCTCTTTC 59.462 55.000 0.00 0.00 0.00 2.62
2789 2839 0.324830 ACCTAGCCGCCTCTCTTTCT 60.325 55.000 0.00 0.00 0.00 2.52
2790 2840 0.387565 CCTAGCCGCCTCTCTTTCTC 59.612 60.000 0.00 0.00 0.00 2.87
2791 2841 0.030101 CTAGCCGCCTCTCTTTCTCG 59.970 60.000 0.00 0.00 0.00 4.04
2792 2842 2.005960 TAGCCGCCTCTCTTTCTCGC 62.006 60.000 0.00 0.00 0.00 5.03
2793 2843 2.202810 CCGCCTCTCTTTCTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
2794 2844 2.580867 CGCCTCTCTTTCTCGCCG 60.581 66.667 0.00 0.00 0.00 6.46
2795 2845 2.574399 GCCTCTCTTTCTCGCCGT 59.426 61.111 0.00 0.00 0.00 5.68
2796 2846 1.079750 GCCTCTCTTTCTCGCCGTT 60.080 57.895 0.00 0.00 0.00 4.44
2797 2847 1.355066 GCCTCTCTTTCTCGCCGTTG 61.355 60.000 0.00 0.00 0.00 4.10
2798 2848 0.038159 CCTCTCTTTCTCGCCGTTGT 60.038 55.000 0.00 0.00 0.00 3.32
2799 2849 1.341606 CTCTCTTTCTCGCCGTTGTC 58.658 55.000 0.00 0.00 0.00 3.18
2800 2850 0.038526 TCTCTTTCTCGCCGTTGTCC 60.039 55.000 0.00 0.00 0.00 4.02
2801 2851 1.344942 CTCTTTCTCGCCGTTGTCCG 61.345 60.000 0.00 0.00 0.00 4.79
2802 2852 1.372499 CTTTCTCGCCGTTGTCCGA 60.372 57.895 0.00 0.00 39.56 4.55
2805 2855 4.796231 CTCGCCGTTGTCCGAGGG 62.796 72.222 2.38 0.00 45.20 4.30
2807 2857 4.796231 CGCCGTTGTCCGAGGGAG 62.796 72.222 0.00 0.00 39.56 4.30
2808 2858 4.452733 GCCGTTGTCCGAGGGAGG 62.453 72.222 0.00 0.00 39.56 4.30
2809 2859 2.995574 CCGTTGTCCGAGGGAGGT 60.996 66.667 0.00 0.00 39.56 3.85
2810 2860 2.580601 CCGTTGTCCGAGGGAGGTT 61.581 63.158 0.00 0.00 39.56 3.50
2811 2861 1.080025 CGTTGTCCGAGGGAGGTTC 60.080 63.158 0.00 0.00 39.56 3.62
2812 2862 1.080025 GTTGTCCGAGGGAGGTTCG 60.080 63.158 0.00 0.00 37.78 3.95
2813 2863 1.228644 TTGTCCGAGGGAGGTTCGA 60.229 57.895 0.00 0.00 40.36 3.71
2814 2864 0.613853 TTGTCCGAGGGAGGTTCGAT 60.614 55.000 0.00 0.00 40.36 3.59
2815 2865 0.613853 TGTCCGAGGGAGGTTCGATT 60.614 55.000 0.00 0.00 40.36 3.34
2816 2866 0.102663 GTCCGAGGGAGGTTCGATTC 59.897 60.000 0.00 0.00 40.36 2.52
2817 2867 0.323999 TCCGAGGGAGGTTCGATTCA 60.324 55.000 0.00 0.00 40.36 2.57
2818 2868 0.103208 CCGAGGGAGGTTCGATTCAG 59.897 60.000 0.00 0.00 40.36 3.02
2819 2869 0.103208 CGAGGGAGGTTCGATTCAGG 59.897 60.000 0.00 0.00 40.36 3.86
2820 2870 0.466124 GAGGGAGGTTCGATTCAGGG 59.534 60.000 0.00 0.00 0.00 4.45
2821 2871 0.983378 AGGGAGGTTCGATTCAGGGG 60.983 60.000 0.00 0.00 0.00 4.79
2822 2872 1.272554 GGGAGGTTCGATTCAGGGGT 61.273 60.000 0.00 0.00 0.00 4.95
2823 2873 0.107654 GGAGGTTCGATTCAGGGGTG 60.108 60.000 0.00 0.00 0.00 4.61
2824 2874 0.107654 GAGGTTCGATTCAGGGGTGG 60.108 60.000 0.00 0.00 0.00 4.61
2825 2875 1.749258 GGTTCGATTCAGGGGTGGC 60.749 63.158 0.00 0.00 0.00 5.01
2826 2876 1.299976 GTTCGATTCAGGGGTGGCT 59.700 57.895 0.00 0.00 0.00 4.75
2827 2877 0.322546 GTTCGATTCAGGGGTGGCTT 60.323 55.000 0.00 0.00 0.00 4.35
2828 2878 0.322456 TTCGATTCAGGGGTGGCTTG 60.322 55.000 0.00 0.00 0.00 4.01
2829 2879 2.409870 CGATTCAGGGGTGGCTTGC 61.410 63.158 0.00 0.00 0.00 4.01
2830 2880 1.000396 GATTCAGGGGTGGCTTGCT 60.000 57.895 0.00 0.00 0.00 3.91
2831 2881 1.304713 ATTCAGGGGTGGCTTGCTG 60.305 57.895 0.00 0.00 0.00 4.41
2832 2882 2.793317 ATTCAGGGGTGGCTTGCTGG 62.793 60.000 0.00 0.00 0.00 4.85
2833 2883 4.290622 CAGGGGTGGCTTGCTGGT 62.291 66.667 0.00 0.00 0.00 4.00
2834 2884 2.531685 AGGGGTGGCTTGCTGGTA 60.532 61.111 0.00 0.00 0.00 3.25
2835 2885 2.160171 AGGGGTGGCTTGCTGGTAA 61.160 57.895 0.00 0.00 0.00 2.85
2836 2886 1.977009 GGGGTGGCTTGCTGGTAAC 60.977 63.158 0.00 0.00 0.00 2.50
2837 2887 1.074951 GGGTGGCTTGCTGGTAACT 59.925 57.895 0.00 0.00 37.61 2.24
2838 2888 1.244019 GGGTGGCTTGCTGGTAACTG 61.244 60.000 0.00 0.00 38.80 3.16
2847 2897 2.377136 CTGGTAACTGCTGGAGGGT 58.623 57.895 0.14 0.00 37.61 4.34
2848 2898 0.693049 CTGGTAACTGCTGGAGGGTT 59.307 55.000 0.14 0.00 37.61 4.11
2849 2899 0.400213 TGGTAACTGCTGGAGGGTTG 59.600 55.000 0.14 0.00 37.61 3.77
2850 2900 0.960861 GGTAACTGCTGGAGGGTTGC 60.961 60.000 0.14 0.00 0.00 4.17
2851 2901 0.960861 GTAACTGCTGGAGGGTTGCC 60.961 60.000 0.14 0.00 0.00 4.52
2852 2902 2.463589 TAACTGCTGGAGGGTTGCCG 62.464 60.000 0.14 0.00 0.00 5.69
2862 2912 4.373116 GGTTGCCGCGGTCAGAGA 62.373 66.667 28.70 7.65 0.00 3.10
2863 2913 2.357034 GTTGCCGCGGTCAGAGAA 60.357 61.111 28.70 7.28 0.00 2.87
2864 2914 2.048222 TTGCCGCGGTCAGAGAAG 60.048 61.111 28.70 0.00 0.00 2.85
2865 2915 2.570284 TTGCCGCGGTCAGAGAAGA 61.570 57.895 28.70 6.16 0.00 2.87
2866 2916 2.094757 TTGCCGCGGTCAGAGAAGAA 62.095 55.000 28.70 5.43 0.00 2.52
2867 2917 1.807573 GCCGCGGTCAGAGAAGAAG 60.808 63.158 28.70 0.00 0.00 2.85
2868 2918 1.883732 CCGCGGTCAGAGAAGAAGA 59.116 57.895 19.50 0.00 0.00 2.87
2869 2919 0.456995 CCGCGGTCAGAGAAGAAGAC 60.457 60.000 19.50 0.00 0.00 3.01
2870 2920 0.241213 CGCGGTCAGAGAAGAAGACA 59.759 55.000 0.00 0.00 34.04 3.41
2871 2921 1.335964 CGCGGTCAGAGAAGAAGACAA 60.336 52.381 0.00 0.00 34.04 3.18
2872 2922 2.333014 GCGGTCAGAGAAGAAGACAAG 58.667 52.381 0.00 0.00 34.04 3.16
2873 2923 2.928731 GCGGTCAGAGAAGAAGACAAGG 60.929 54.545 0.00 0.00 34.04 3.61
2874 2924 2.353208 CGGTCAGAGAAGAAGACAAGGG 60.353 54.545 0.00 0.00 34.04 3.95
2875 2925 2.614229 GGTCAGAGAAGAAGACAAGGGC 60.614 54.545 0.00 0.00 34.04 5.19
2876 2926 2.301583 GTCAGAGAAGAAGACAAGGGCT 59.698 50.000 0.00 0.00 32.68 5.19
2877 2927 2.975489 TCAGAGAAGAAGACAAGGGCTT 59.025 45.455 0.00 0.00 0.00 4.35
2878 2928 4.021016 GTCAGAGAAGAAGACAAGGGCTTA 60.021 45.833 0.00 0.00 32.68 3.09
2883 2933 5.555966 AGAAGAAGACAAGGGCTTAAAGAG 58.444 41.667 0.00 0.00 0.00 2.85
2900 2952 1.300971 GAGCATCTTCAACAGGCGCA 61.301 55.000 10.83 0.00 0.00 6.09
2915 2967 6.460664 ACAGGCGCAAAATAATTTTTACAC 57.539 33.333 10.83 0.00 33.29 2.90
2976 3028 0.179015 TCCGGCTGCCACTGTAAAAA 60.179 50.000 20.29 0.00 0.00 1.94
3003 3055 3.430779 CGTGAGCAGCTTCATCAGA 57.569 52.632 0.00 0.00 0.00 3.27
3100 3183 6.245408 TCAAATAACATAGTTCAAGCCCAGT 58.755 36.000 0.00 0.00 0.00 4.00
3114 3197 3.513517 AGCCCAGTACCACAAACTAGTA 58.486 45.455 0.00 0.00 0.00 1.82
3121 3204 6.032094 CAGTACCACAAACTAGTACATACGG 58.968 44.000 0.00 0.00 39.04 4.02
3192 3284 5.302313 AGAAACTACTCATTATCGTCCTCCC 59.698 44.000 0.00 0.00 0.00 4.30
3218 3310 2.296471 GGTGGTGTAGTCCGATGATAGG 59.704 54.545 0.00 0.00 0.00 2.57
3280 3372 0.392461 GCCAATCCCAGTTCGCACTA 60.392 55.000 0.00 0.00 0.00 2.74
3281 3373 1.948611 GCCAATCCCAGTTCGCACTAA 60.949 52.381 0.00 0.00 0.00 2.24
3292 3384 0.458260 TCGCACTAAGCTATCGCCAA 59.542 50.000 0.00 0.00 42.61 4.52
3301 3393 0.819259 GCTATCGCCAATGCCTTCCA 60.819 55.000 0.00 0.00 0.00 3.53
3302 3394 0.947244 CTATCGCCAATGCCTTCCAC 59.053 55.000 0.00 0.00 0.00 4.02
3314 3408 3.865929 CTTCCACGCACGCCTGTCT 62.866 63.158 0.00 0.00 0.00 3.41
3323 3417 4.680237 CGCCTGTCTGCCCGTTCA 62.680 66.667 0.00 0.00 0.00 3.18
3324 3418 2.281484 GCCTGTCTGCCCGTTCAA 60.281 61.111 0.00 0.00 0.00 2.69
3372 3480 2.582436 GCGACATCCTCCGGGAAA 59.418 61.111 0.00 0.00 45.78 3.13
3379 3487 1.486145 ATCCTCCGGGAAACGTTGGT 61.486 55.000 0.00 0.00 45.78 3.67
3406 3514 2.350895 CCATGGCGTCCTTGTCCA 59.649 61.111 0.00 0.00 0.00 4.02
3415 3523 1.918293 TCCTTGTCCACCTCGGCAT 60.918 57.895 0.00 0.00 33.14 4.40
3416 3524 1.746615 CCTTGTCCACCTCGGCATG 60.747 63.158 0.00 0.00 33.14 4.06
3417 3525 1.296392 CTTGTCCACCTCGGCATGA 59.704 57.895 0.00 0.00 33.14 3.07
3418 3526 1.003839 TTGTCCACCTCGGCATGAC 60.004 57.895 0.00 0.00 33.14 3.06
3457 3573 4.473520 CTGGATGCGGCGGTCCTT 62.474 66.667 20.39 0.00 35.49 3.36
3471 3587 1.066430 GGTCCTTGTCGGTGATTAGCA 60.066 52.381 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.082192 CCGTTATGGTCGTCGTGG 57.918 61.111 0.00 0.00 0.00 4.94
9 10 1.366366 CGGAGGGCTACCGTTATGG 59.634 63.158 12.92 0.00 44.57 2.74
30 31 1.064946 CAGAGAGGGAAGCTACGCG 59.935 63.158 3.53 3.53 0.00 6.01
36 37 1.077858 CCTTGGCAGAGAGGGAAGC 60.078 63.158 0.00 0.00 0.00 3.86
38 39 2.959484 CGCCTTGGCAGAGAGGGAA 61.959 63.158 12.45 0.00 33.52 3.97
57 58 1.126846 CCTTTTCTGCATGACGACGAC 59.873 52.381 0.00 0.00 0.00 4.34
59 60 1.148310 ACCTTTTCTGCATGACGACG 58.852 50.000 0.00 0.00 0.00 5.12
82 83 2.746375 CGCCTCCCAGCCACCTATT 61.746 63.158 0.00 0.00 0.00 1.73
134 135 1.376037 GTGGGTTGAGAAGGAGGCG 60.376 63.158 0.00 0.00 0.00 5.52
136 137 1.352083 TGAGTGGGTTGAGAAGGAGG 58.648 55.000 0.00 0.00 0.00 4.30
137 138 3.142174 GTTTGAGTGGGTTGAGAAGGAG 58.858 50.000 0.00 0.00 0.00 3.69
146 147 1.341187 TGGAAACGGTTTGAGTGGGTT 60.341 47.619 11.43 0.00 0.00 4.11
156 157 1.003233 GGAGAGGATGTGGAAACGGTT 59.997 52.381 0.00 0.00 0.00 4.44
160 161 0.902531 TCGGGAGAGGATGTGGAAAC 59.097 55.000 0.00 0.00 0.00 2.78
177 178 0.512952 CACGCCAGGAGAAAGTTTCG 59.487 55.000 9.91 0.00 34.02 3.46
178 179 1.878953 TCACGCCAGGAGAAAGTTTC 58.121 50.000 7.57 7.57 0.00 2.78
189 190 4.109050 GAGACTAAAGAAGATCACGCCAG 58.891 47.826 0.00 0.00 0.00 4.85
195 196 3.131223 CCCAGCGAGACTAAAGAAGATCA 59.869 47.826 0.00 0.00 0.00 2.92
197 198 3.366396 TCCCAGCGAGACTAAAGAAGAT 58.634 45.455 0.00 0.00 0.00 2.40
239 241 3.127533 GGTCATGTCACAGCGGGC 61.128 66.667 0.00 0.00 0.00 6.13
240 242 2.578163 ATCGGTCATGTCACAGCGGG 62.578 60.000 4.22 0.00 34.30 6.13
241 243 1.153568 ATCGGTCATGTCACAGCGG 60.154 57.895 4.22 0.00 34.30 5.52
243 245 0.723414 CACATCGGTCATGTCACAGC 59.277 55.000 0.00 0.00 44.60 4.40
244 246 1.362768 CCACATCGGTCATGTCACAG 58.637 55.000 0.00 0.00 44.60 3.66
245 247 0.036483 CCCACATCGGTCATGTCACA 60.036 55.000 0.00 0.00 44.60 3.58
246 248 0.744414 CCCCACATCGGTCATGTCAC 60.744 60.000 0.00 0.00 44.60 3.67
247 249 1.198094 ACCCCACATCGGTCATGTCA 61.198 55.000 0.00 0.00 44.60 3.58
248 250 0.744414 CACCCCACATCGGTCATGTC 60.744 60.000 0.00 0.00 44.60 3.06
250 252 0.462581 CTCACCCCACATCGGTCATG 60.463 60.000 0.00 0.00 38.64 3.07
251 253 0.909610 ACTCACCCCACATCGGTCAT 60.910 55.000 0.00 0.00 0.00 3.06
252 254 1.535444 ACTCACCCCACATCGGTCA 60.535 57.895 0.00 0.00 0.00 4.02
253 255 1.079127 CACTCACCCCACATCGGTC 60.079 63.158 0.00 0.00 0.00 4.79
254 256 1.841556 ACACTCACCCCACATCGGT 60.842 57.895 0.00 0.00 0.00 4.69
255 257 1.375908 CACACTCACCCCACATCGG 60.376 63.158 0.00 0.00 0.00 4.18
256 258 1.375908 CCACACTCACCCCACATCG 60.376 63.158 0.00 0.00 0.00 3.84
257 259 1.675641 GCCACACTCACCCCACATC 60.676 63.158 0.00 0.00 0.00 3.06
258 260 2.436109 GCCACACTCACCCCACAT 59.564 61.111 0.00 0.00 0.00 3.21
259 261 4.248842 CGCCACACTCACCCCACA 62.249 66.667 0.00 0.00 0.00 4.17
264 266 4.760047 ATCGCCGCCACACTCACC 62.760 66.667 0.00 0.00 0.00 4.02
265 267 3.490759 CATCGCCGCCACACTCAC 61.491 66.667 0.00 0.00 0.00 3.51
266 268 4.758251 CCATCGCCGCCACACTCA 62.758 66.667 0.00 0.00 0.00 3.41
273 275 4.256180 ATCTTCCCCATCGCCGCC 62.256 66.667 0.00 0.00 0.00 6.13
274 276 2.974698 CATCTTCCCCATCGCCGC 60.975 66.667 0.00 0.00 0.00 6.53
275 277 1.301244 CTCATCTTCCCCATCGCCG 60.301 63.158 0.00 0.00 0.00 6.46
276 278 1.072159 CCTCATCTTCCCCATCGCC 59.928 63.158 0.00 0.00 0.00 5.54
277 279 1.072159 CCCTCATCTTCCCCATCGC 59.928 63.158 0.00 0.00 0.00 4.58
278 280 0.683973 CTCCCTCATCTTCCCCATCG 59.316 60.000 0.00 0.00 0.00 3.84
279 281 2.109229 TCTCCCTCATCTTCCCCATC 57.891 55.000 0.00 0.00 0.00 3.51
280 282 2.294127 ACTTCTCCCTCATCTTCCCCAT 60.294 50.000 0.00 0.00 0.00 4.00
281 283 1.081174 ACTTCTCCCTCATCTTCCCCA 59.919 52.381 0.00 0.00 0.00 4.96
282 284 1.488393 CACTTCTCCCTCATCTTCCCC 59.512 57.143 0.00 0.00 0.00 4.81
287 289 0.820871 GCGTCACTTCTCCCTCATCT 59.179 55.000 0.00 0.00 0.00 2.90
298 300 2.589442 TTTTCGCGGGCGTCACTT 60.589 55.556 13.21 0.00 40.74 3.16
308 310 1.391485 CACACATCTCCTCTTTTCGCG 59.609 52.381 0.00 0.00 0.00 5.87
311 313 4.020662 ACCTCTCACACATCTCCTCTTTTC 60.021 45.833 0.00 0.00 0.00 2.29
315 317 2.455557 CACCTCTCACACATCTCCTCT 58.544 52.381 0.00 0.00 0.00 3.69
325 327 4.314440 GCGGTGCCACCTCTCACA 62.314 66.667 12.94 0.00 35.66 3.58
331 333 3.190738 TTGCTTAGCGGTGCCACCT 62.191 57.895 12.94 0.00 35.66 4.00
332 334 2.671619 TTGCTTAGCGGTGCCACC 60.672 61.111 2.98 2.98 34.05 4.61
340 342 1.078759 CGGTCCACTCTTGCTTAGCG 61.079 60.000 0.00 0.00 0.00 4.26
344 346 2.568623 AAATCGGTCCACTCTTGCTT 57.431 45.000 0.00 0.00 0.00 3.91
356 358 1.604604 CATTCCGGGCATAAATCGGT 58.395 50.000 0.00 0.00 43.75 4.69
381 383 1.864176 CCACGTTTACCGCTGGAAC 59.136 57.895 1.50 0.00 38.94 3.62
382 384 1.962306 GCCACGTTTACCGCTGGAA 60.962 57.895 1.50 0.00 38.94 3.53
391 393 1.068885 CGCCAAATTCAGCCACGTTTA 60.069 47.619 0.00 0.00 0.00 2.01
401 403 4.446994 TCATGCAAATACGCCAAATTCA 57.553 36.364 0.00 0.00 0.00 2.57
403 405 5.294060 GGAATTCATGCAAATACGCCAAATT 59.706 36.000 7.93 0.00 0.00 1.82
413 415 3.598019 AAGCACGGAATTCATGCAAAT 57.402 38.095 26.62 14.79 41.97 2.32
418 420 3.429543 CCAACAAAAGCACGGAATTCATG 59.570 43.478 7.93 6.20 0.00 3.07
419 421 3.320541 TCCAACAAAAGCACGGAATTCAT 59.679 39.130 7.93 0.00 0.00 2.57
430 432 2.602257 AAAGCAGGTCCAACAAAAGC 57.398 45.000 0.00 0.00 0.00 3.51
432 434 2.834549 TCCAAAAGCAGGTCCAACAAAA 59.165 40.909 0.00 0.00 0.00 2.44
437 439 3.157087 GAGATTCCAAAAGCAGGTCCAA 58.843 45.455 0.00 0.00 0.00 3.53
446 448 4.692155 GGTTGGCATTTGAGATTCCAAAAG 59.308 41.667 0.00 0.00 39.20 2.27
451 453 1.134946 CCGGTTGGCATTTGAGATTCC 59.865 52.381 0.00 0.00 0.00 3.01
459 461 4.943373 ACCTTCCGGTTGGCATTT 57.057 50.000 13.84 0.00 42.13 2.32
470 472 5.434408 ACTGAATTCCCGTAATAACCTTCC 58.566 41.667 2.27 0.00 0.00 3.46
479 481 6.608405 TCTCCATAAGTACTGAATTCCCGTAA 59.392 38.462 2.27 0.00 0.00 3.18
482 484 5.531122 TCTCCATAAGTACTGAATTCCCG 57.469 43.478 2.27 0.00 0.00 5.14
483 485 7.255277 GCAAATCTCCATAAGTACTGAATTCCC 60.255 40.741 2.27 0.00 0.00 3.97
484 486 7.255277 GGCAAATCTCCATAAGTACTGAATTCC 60.255 40.741 2.27 0.00 0.00 3.01
491 493 5.957771 TCTGGCAAATCTCCATAAGTACT 57.042 39.130 0.00 0.00 32.37 2.73
500 502 9.213799 CTATTAGAGTAATTCTGGCAAATCTCC 57.786 37.037 0.00 0.00 36.61 3.71
505 507 8.574251 TTTGCTATTAGAGTAATTCTGGCAAA 57.426 30.769 0.00 0.00 40.93 3.68
546 548 8.751335 CAAGCGTGTGTACTTTTGATTTATTTT 58.249 29.630 0.00 0.00 0.00 1.82
547 549 7.381139 CCAAGCGTGTGTACTTTTGATTTATTT 59.619 33.333 0.00 0.00 0.00 1.40
548 550 6.861055 CCAAGCGTGTGTACTTTTGATTTATT 59.139 34.615 0.00 0.00 0.00 1.40
549 551 6.378582 CCAAGCGTGTGTACTTTTGATTTAT 58.621 36.000 0.00 0.00 0.00 1.40
550 552 5.278071 CCCAAGCGTGTGTACTTTTGATTTA 60.278 40.000 0.00 0.00 0.00 1.40
551 553 4.499019 CCCAAGCGTGTGTACTTTTGATTT 60.499 41.667 0.00 0.00 0.00 2.17
552 554 3.004315 CCCAAGCGTGTGTACTTTTGATT 59.996 43.478 0.00 0.00 0.00 2.57
553 555 2.552315 CCCAAGCGTGTGTACTTTTGAT 59.448 45.455 0.00 0.00 0.00 2.57
554 556 1.944024 CCCAAGCGTGTGTACTTTTGA 59.056 47.619 0.00 0.00 0.00 2.69
557 559 1.414919 TCTCCCAAGCGTGTGTACTTT 59.585 47.619 0.00 0.00 0.00 2.66
578 580 1.689892 GGGAGAGGGAGTAGTCTTGGG 60.690 61.905 0.00 0.00 0.00 4.12
585 587 1.133199 AGCAGATGGGAGAGGGAGTAG 60.133 57.143 0.00 0.00 0.00 2.57
648 650 1.823169 AACAGCCGAGCGAAACCCTA 61.823 55.000 0.00 0.00 0.00 3.53
656 658 2.127118 CAAAGCAACAGCCGAGCG 60.127 61.111 0.00 0.00 0.00 5.03
725 728 9.923786 GAACCTTTTGTTTTAAATACGCATTTT 57.076 25.926 0.00 0.00 37.29 1.82
731 734 7.531534 ACGATCGAACCTTTTGTTTTAAATACG 59.468 33.333 24.34 0.00 37.29 3.06
761 764 4.791974 CTTCTTCGCTTGCTTGATTCTTT 58.208 39.130 0.00 0.00 0.00 2.52
771 774 2.174349 CGTGGCTTCTTCGCTTGC 59.826 61.111 0.00 0.00 0.00 4.01
870 874 7.308348 GGACACATCGAAAGGTTTATTGAAGAA 60.308 37.037 0.00 0.00 0.00 2.52
880 884 2.872038 GCTGAGGACACATCGAAAGGTT 60.872 50.000 0.00 0.00 0.00 3.50
926 932 1.209621 TTAAATAGAGCGCTGGGGGT 58.790 50.000 18.48 0.00 0.00 4.95
930 936 2.031682 GTGGCATTAAATAGAGCGCTGG 60.032 50.000 18.48 0.00 0.00 4.85
996 1002 3.578716 TCGTTATCTCTGGGATTGGGATC 59.421 47.826 0.00 0.00 35.98 3.36
1435 1448 2.182030 CACGGGCTCGAAGGTCTC 59.818 66.667 15.95 0.00 40.11 3.36
2097 2110 1.339055 CCAATGGAGAAGACGAAGCCA 60.339 52.381 0.00 0.00 0.00 4.75
2171 2184 0.374758 CGCACACATGACATGGCTAC 59.625 55.000 19.39 5.69 33.60 3.58
2211 2235 0.661552 TGCCGTCGACTACTAGCATC 59.338 55.000 14.70 0.00 32.08 3.91
2212 2236 1.001268 CATGCCGTCGACTACTAGCAT 60.001 52.381 14.70 15.60 42.94 3.79
2232 2256 0.102481 TCTTCGCCTTCTATGCCGAC 59.898 55.000 0.00 0.00 0.00 4.79
2233 2257 0.385751 CTCTTCGCCTTCTATGCCGA 59.614 55.000 0.00 0.00 0.00 5.54
2234 2258 0.385751 TCTCTTCGCCTTCTATGCCG 59.614 55.000 0.00 0.00 0.00 5.69
2235 2259 1.270041 CCTCTCTTCGCCTTCTATGCC 60.270 57.143 0.00 0.00 0.00 4.40
2236 2260 1.410882 ACCTCTCTTCGCCTTCTATGC 59.589 52.381 0.00 0.00 0.00 3.14
2237 2261 3.886505 ACTACCTCTCTTCGCCTTCTATG 59.113 47.826 0.00 0.00 0.00 2.23
2238 2262 3.886505 CACTACCTCTCTTCGCCTTCTAT 59.113 47.826 0.00 0.00 0.00 1.98
2239 2263 3.280295 CACTACCTCTCTTCGCCTTCTA 58.720 50.000 0.00 0.00 0.00 2.10
2240 2264 2.096248 CACTACCTCTCTTCGCCTTCT 58.904 52.381 0.00 0.00 0.00 2.85
2296 2320 3.152341 CCAGGAATTCAGTTCTGCAACT 58.848 45.455 7.93 0.00 44.26 3.16
2297 2321 2.887152 ACCAGGAATTCAGTTCTGCAAC 59.113 45.455 7.93 0.00 37.01 4.17
2298 2322 3.149196 GACCAGGAATTCAGTTCTGCAA 58.851 45.455 7.93 0.00 37.01 4.08
2299 2323 2.783135 GACCAGGAATTCAGTTCTGCA 58.217 47.619 7.93 0.00 37.01 4.41
2300 2324 1.734465 CGACCAGGAATTCAGTTCTGC 59.266 52.381 7.93 0.00 37.01 4.26
2317 2341 3.857052 TCCATCAGTTCAACCATACGAC 58.143 45.455 0.00 0.00 0.00 4.34
2329 2353 3.846588 ACTACACCCTTGATCCATCAGTT 59.153 43.478 0.00 0.00 38.19 3.16
2342 2366 5.012354 TCGAAAACAAGGATTACTACACCCT 59.988 40.000 0.00 0.00 0.00 4.34
2392 2417 2.531522 AATGTTGCTTGCCAAGAACC 57.468 45.000 9.04 0.00 33.21 3.62
2418 2443 6.395629 CGTAAGTATTTTTGACTGGAGGAGA 58.604 40.000 0.00 0.00 0.00 3.71
2440 2465 3.354467 TGTTTTTACCTGTTCCCAACGT 58.646 40.909 0.00 0.00 0.00 3.99
2441 2466 3.243267 CCTGTTTTTACCTGTTCCCAACG 60.243 47.826 0.00 0.00 0.00 4.10
2442 2467 3.491964 GCCTGTTTTTACCTGTTCCCAAC 60.492 47.826 0.00 0.00 0.00 3.77
2443 2468 2.696187 GCCTGTTTTTACCTGTTCCCAA 59.304 45.455 0.00 0.00 0.00 4.12
2444 2469 2.312390 GCCTGTTTTTACCTGTTCCCA 58.688 47.619 0.00 0.00 0.00 4.37
2472 2497 1.070289 GAGATGTATCCCCGAACCCAC 59.930 57.143 0.00 0.00 0.00 4.61
2481 2506 6.656632 TGTTACTCTCATGAGATGTATCCC 57.343 41.667 25.30 17.22 42.73 3.85
2512 2543 4.647424 TTTTCGTGTTTCTCAAAGGCAT 57.353 36.364 0.00 0.00 0.00 4.40
2516 2547 8.567221 CGCTTTATATTTTCGTGTTTCTCAAAG 58.433 33.333 0.00 0.00 0.00 2.77
2517 2548 8.283992 TCGCTTTATATTTTCGTGTTTCTCAAA 58.716 29.630 0.00 0.00 0.00 2.69
2519 2550 7.354025 TCGCTTTATATTTTCGTGTTTCTCA 57.646 32.000 0.00 0.00 0.00 3.27
2520 2551 8.564766 GTTTCGCTTTATATTTTCGTGTTTCTC 58.435 33.333 0.00 0.00 0.00 2.87
2530 2565 8.455682 TCAAGAATCCGTTTCGCTTTATATTTT 58.544 29.630 0.00 0.00 39.46 1.82
2532 2567 7.548196 TCAAGAATCCGTTTCGCTTTATATT 57.452 32.000 0.00 0.00 39.46 1.28
2534 2569 5.006358 GCTCAAGAATCCGTTTCGCTTTATA 59.994 40.000 0.00 0.00 39.46 0.98
2559 2594 1.066787 AGTCGAGGAAGGCAAGCTAAC 60.067 52.381 0.00 0.00 0.00 2.34
2560 2595 1.204941 GAGTCGAGGAAGGCAAGCTAA 59.795 52.381 0.00 0.00 0.00 3.09
2561 2596 0.818296 GAGTCGAGGAAGGCAAGCTA 59.182 55.000 0.00 0.00 0.00 3.32
2562 2597 0.902516 AGAGTCGAGGAAGGCAAGCT 60.903 55.000 0.00 0.00 0.00 3.74
2563 2598 0.739112 CAGAGTCGAGGAAGGCAAGC 60.739 60.000 0.00 0.00 0.00 4.01
2564 2599 0.605589 ACAGAGTCGAGGAAGGCAAG 59.394 55.000 0.00 0.00 0.00 4.01
2572 2621 3.791973 ATGCTAAGAACAGAGTCGAGG 57.208 47.619 0.00 0.00 0.00 4.63
2677 2727 1.275291 GATCGTCCACAGGGAGAAACA 59.725 52.381 0.00 0.00 46.12 2.83
2722 2772 0.036483 TAGCTGCGCTTGACATTCCA 60.036 50.000 9.73 0.00 40.44 3.53
2723 2773 0.375106 GTAGCTGCGCTTGACATTCC 59.625 55.000 9.73 0.00 40.44 3.01
2724 2774 0.025513 CGTAGCTGCGCTTGACATTC 59.974 55.000 12.24 0.00 40.44 2.67
2725 2775 0.389817 TCGTAGCTGCGCTTGACATT 60.390 50.000 20.12 0.00 40.44 2.71
2726 2776 0.389817 TTCGTAGCTGCGCTTGACAT 60.390 50.000 20.12 0.00 40.44 3.06
2727 2777 0.598942 TTTCGTAGCTGCGCTTGACA 60.599 50.000 20.12 0.00 40.44 3.58
2728 2778 0.511221 TTTTCGTAGCTGCGCTTGAC 59.489 50.000 20.12 0.21 40.44 3.18
2729 2779 0.790207 CTTTTCGTAGCTGCGCTTGA 59.210 50.000 20.12 0.00 40.44 3.02
2730 2780 0.790207 TCTTTTCGTAGCTGCGCTTG 59.210 50.000 20.12 9.31 40.44 4.01
2731 2781 1.071605 CTCTTTTCGTAGCTGCGCTT 58.928 50.000 20.12 0.00 40.44 4.68
2732 2782 0.737715 CCTCTTTTCGTAGCTGCGCT 60.738 55.000 20.12 8.09 43.41 5.92
2733 2783 1.696832 CCCTCTTTTCGTAGCTGCGC 61.697 60.000 20.12 0.00 0.00 6.09
2734 2784 1.696832 GCCCTCTTTTCGTAGCTGCG 61.697 60.000 18.85 18.85 0.00 5.18
2735 2785 0.673644 TGCCCTCTTTTCGTAGCTGC 60.674 55.000 0.00 0.00 0.00 5.25
2736 2786 1.808411 TTGCCCTCTTTTCGTAGCTG 58.192 50.000 0.00 0.00 0.00 4.24
2737 2787 2.427506 CTTTGCCCTCTTTTCGTAGCT 58.572 47.619 0.00 0.00 0.00 3.32
2738 2788 1.468914 CCTTTGCCCTCTTTTCGTAGC 59.531 52.381 0.00 0.00 0.00 3.58
2739 2789 1.468914 GCCTTTGCCCTCTTTTCGTAG 59.531 52.381 0.00 0.00 0.00 3.51
2740 2790 1.530323 GCCTTTGCCCTCTTTTCGTA 58.470 50.000 0.00 0.00 0.00 3.43
2741 2791 1.515521 CGCCTTTGCCCTCTTTTCGT 61.516 55.000 0.00 0.00 0.00 3.85
2742 2792 1.210155 CGCCTTTGCCCTCTTTTCG 59.790 57.895 0.00 0.00 0.00 3.46
2743 2793 1.133216 GATCGCCTTTGCCCTCTTTTC 59.867 52.381 0.00 0.00 0.00 2.29
2744 2794 1.177401 GATCGCCTTTGCCCTCTTTT 58.823 50.000 0.00 0.00 0.00 2.27
2745 2795 1.026718 CGATCGCCTTTGCCCTCTTT 61.027 55.000 0.26 0.00 0.00 2.52
2746 2796 1.450312 CGATCGCCTTTGCCCTCTT 60.450 57.895 0.26 0.00 0.00 2.85
2747 2797 2.187946 CGATCGCCTTTGCCCTCT 59.812 61.111 0.26 0.00 0.00 3.69
2748 2798 2.125106 ACGATCGCCTTTGCCCTC 60.125 61.111 16.60 0.00 0.00 4.30
2749 2799 2.436646 CACGATCGCCTTTGCCCT 60.437 61.111 16.60 0.00 0.00 5.19
2750 2800 1.582610 TTTCACGATCGCCTTTGCCC 61.583 55.000 16.60 0.00 0.00 5.36
2751 2801 0.239879 TTTTCACGATCGCCTTTGCC 59.760 50.000 16.60 0.00 0.00 4.52
2752 2802 1.327507 GTTTTCACGATCGCCTTTGC 58.672 50.000 16.60 0.00 0.00 3.68
2753 2803 1.535462 AGGTTTTCACGATCGCCTTTG 59.465 47.619 16.60 6.03 0.00 2.77
2754 2804 1.892209 AGGTTTTCACGATCGCCTTT 58.108 45.000 16.60 0.00 0.00 3.11
2755 2805 2.618053 CTAGGTTTTCACGATCGCCTT 58.382 47.619 16.60 0.00 0.00 4.35
2756 2806 1.739371 GCTAGGTTTTCACGATCGCCT 60.739 52.381 16.60 14.55 0.00 5.52
2757 2807 0.651031 GCTAGGTTTTCACGATCGCC 59.349 55.000 16.60 7.08 0.00 5.54
2758 2808 0.651031 GGCTAGGTTTTCACGATCGC 59.349 55.000 16.60 0.00 0.00 4.58
2759 2809 0.921347 CGGCTAGGTTTTCACGATCG 59.079 55.000 14.88 14.88 0.00 3.69
2760 2810 0.651031 GCGGCTAGGTTTTCACGATC 59.349 55.000 0.00 0.00 0.00 3.69
2761 2811 0.743345 GGCGGCTAGGTTTTCACGAT 60.743 55.000 0.00 0.00 0.00 3.73
2762 2812 1.375013 GGCGGCTAGGTTTTCACGA 60.375 57.895 0.00 0.00 0.00 4.35
2763 2813 1.359459 GAGGCGGCTAGGTTTTCACG 61.359 60.000 13.24 0.00 0.00 4.35
2764 2814 0.036294 AGAGGCGGCTAGGTTTTCAC 60.036 55.000 13.24 0.00 0.00 3.18
2765 2815 0.249398 GAGAGGCGGCTAGGTTTTCA 59.751 55.000 13.24 0.00 0.00 2.69
2766 2816 0.537653 AGAGAGGCGGCTAGGTTTTC 59.462 55.000 13.24 0.00 0.00 2.29
2767 2817 0.984995 AAGAGAGGCGGCTAGGTTTT 59.015 50.000 13.24 0.00 0.00 2.43
2768 2818 0.984995 AAAGAGAGGCGGCTAGGTTT 59.015 50.000 13.24 8.79 0.00 3.27
2769 2819 0.537653 GAAAGAGAGGCGGCTAGGTT 59.462 55.000 13.24 3.71 0.00 3.50
2770 2820 0.324830 AGAAAGAGAGGCGGCTAGGT 60.325 55.000 13.24 0.00 0.00 3.08
2771 2821 0.387565 GAGAAAGAGAGGCGGCTAGG 59.612 60.000 13.24 0.00 0.00 3.02
2772 2822 0.030101 CGAGAAAGAGAGGCGGCTAG 59.970 60.000 13.24 0.00 0.00 3.42
2773 2823 2.005960 GCGAGAAAGAGAGGCGGCTA 62.006 60.000 13.24 0.00 0.00 3.93
2774 2824 2.888863 CGAGAAAGAGAGGCGGCT 59.111 61.111 13.09 13.09 0.00 5.52
2775 2825 2.888051 GCGAGAAAGAGAGGCGGC 60.888 66.667 0.00 0.00 0.00 6.53
2776 2826 2.202810 GGCGAGAAAGAGAGGCGG 60.203 66.667 0.00 0.00 0.00 6.13
2777 2827 2.580867 CGGCGAGAAAGAGAGGCG 60.581 66.667 0.00 0.00 45.35 5.52
2778 2828 1.079750 AACGGCGAGAAAGAGAGGC 60.080 57.895 16.62 0.00 0.00 4.70
2779 2829 0.038159 ACAACGGCGAGAAAGAGAGG 60.038 55.000 16.62 0.00 0.00 3.69
2780 2830 1.341606 GACAACGGCGAGAAAGAGAG 58.658 55.000 16.62 0.00 0.00 3.20
2781 2831 0.038526 GGACAACGGCGAGAAAGAGA 60.039 55.000 16.62 0.00 0.00 3.10
2782 2832 1.344942 CGGACAACGGCGAGAAAGAG 61.345 60.000 16.62 0.00 39.42 2.85
2783 2833 1.372499 CGGACAACGGCGAGAAAGA 60.372 57.895 16.62 0.00 39.42 2.52
2784 2834 1.344942 CTCGGACAACGGCGAGAAAG 61.345 60.000 16.62 0.13 44.45 2.62
2785 2835 1.372499 CTCGGACAACGGCGAGAAA 60.372 57.895 16.62 0.00 44.45 2.52
2786 2836 2.257371 CTCGGACAACGGCGAGAA 59.743 61.111 16.62 0.00 44.45 2.87
2787 2837 3.744719 CCTCGGACAACGGCGAGA 61.745 66.667 16.62 1.88 44.45 4.04
2788 2838 4.796231 CCCTCGGACAACGGCGAG 62.796 72.222 16.62 8.41 44.45 5.03
2790 2840 4.796231 CTCCCTCGGACAACGGCG 62.796 72.222 4.80 4.80 44.45 6.46
2791 2841 4.452733 CCTCCCTCGGACAACGGC 62.453 72.222 0.00 0.00 44.45 5.68
2792 2842 2.502692 GAACCTCCCTCGGACAACGG 62.503 65.000 0.00 0.00 44.45 4.44
2793 2843 1.080025 GAACCTCCCTCGGACAACG 60.080 63.158 0.00 0.00 46.11 4.10
2794 2844 1.080025 CGAACCTCCCTCGGACAAC 60.080 63.158 0.00 0.00 32.62 3.32
2795 2845 0.613853 ATCGAACCTCCCTCGGACAA 60.614 55.000 0.00 0.00 36.93 3.18
2796 2846 0.613853 AATCGAACCTCCCTCGGACA 60.614 55.000 0.00 0.00 36.93 4.02
2797 2847 0.102663 GAATCGAACCTCCCTCGGAC 59.897 60.000 0.00 0.00 36.93 4.79
2798 2848 0.323999 TGAATCGAACCTCCCTCGGA 60.324 55.000 0.00 0.00 36.93 4.55
2799 2849 0.103208 CTGAATCGAACCTCCCTCGG 59.897 60.000 0.00 0.00 36.93 4.63
2800 2850 0.103208 CCTGAATCGAACCTCCCTCG 59.897 60.000 0.00 0.00 37.66 4.63
2801 2851 0.466124 CCCTGAATCGAACCTCCCTC 59.534 60.000 0.00 0.00 0.00 4.30
2802 2852 0.983378 CCCCTGAATCGAACCTCCCT 60.983 60.000 0.00 0.00 0.00 4.20
2803 2853 1.272554 ACCCCTGAATCGAACCTCCC 61.273 60.000 0.00 0.00 0.00 4.30
2804 2854 0.107654 CACCCCTGAATCGAACCTCC 60.108 60.000 0.00 0.00 0.00 4.30
2805 2855 0.107654 CCACCCCTGAATCGAACCTC 60.108 60.000 0.00 0.00 0.00 3.85
2806 2856 1.991230 CCACCCCTGAATCGAACCT 59.009 57.895 0.00 0.00 0.00 3.50
2807 2857 1.749258 GCCACCCCTGAATCGAACC 60.749 63.158 0.00 0.00 0.00 3.62
2808 2858 0.322546 AAGCCACCCCTGAATCGAAC 60.323 55.000 0.00 0.00 0.00 3.95
2809 2859 0.322456 CAAGCCACCCCTGAATCGAA 60.322 55.000 0.00 0.00 0.00 3.71
2810 2860 1.299648 CAAGCCACCCCTGAATCGA 59.700 57.895 0.00 0.00 0.00 3.59
2811 2861 2.409870 GCAAGCCACCCCTGAATCG 61.410 63.158 0.00 0.00 0.00 3.34
2812 2862 1.000396 AGCAAGCCACCCCTGAATC 60.000 57.895 0.00 0.00 0.00 2.52
2813 2863 1.304713 CAGCAAGCCACCCCTGAAT 60.305 57.895 0.00 0.00 0.00 2.57
2814 2864 2.115910 CAGCAAGCCACCCCTGAA 59.884 61.111 0.00 0.00 0.00 3.02
2815 2865 3.970410 CCAGCAAGCCACCCCTGA 61.970 66.667 0.00 0.00 0.00 3.86
2816 2866 2.424842 TTACCAGCAAGCCACCCCTG 62.425 60.000 0.00 0.00 0.00 4.45
2817 2867 2.160171 TTACCAGCAAGCCACCCCT 61.160 57.895 0.00 0.00 0.00 4.79
2818 2868 1.977009 GTTACCAGCAAGCCACCCC 60.977 63.158 0.00 0.00 0.00 4.95
2819 2869 1.074951 AGTTACCAGCAAGCCACCC 59.925 57.895 0.00 0.00 0.00 4.61
2820 2870 1.866853 GCAGTTACCAGCAAGCCACC 61.867 60.000 0.00 0.00 0.00 4.61
2821 2871 0.890996 AGCAGTTACCAGCAAGCCAC 60.891 55.000 0.58 0.00 0.00 5.01
2822 2872 0.890542 CAGCAGTTACCAGCAAGCCA 60.891 55.000 0.58 0.00 0.00 4.75
2823 2873 1.589716 CCAGCAGTTACCAGCAAGCC 61.590 60.000 0.58 0.00 0.00 4.35
2824 2874 0.606401 TCCAGCAGTTACCAGCAAGC 60.606 55.000 0.58 0.00 0.00 4.01
2825 2875 1.446907 CTCCAGCAGTTACCAGCAAG 58.553 55.000 0.58 0.00 0.00 4.01
2826 2876 0.036732 CCTCCAGCAGTTACCAGCAA 59.963 55.000 0.58 0.00 0.00 3.91
2827 2877 1.679311 CCTCCAGCAGTTACCAGCA 59.321 57.895 0.58 0.00 0.00 4.41
2828 2878 1.078143 CCCTCCAGCAGTTACCAGC 60.078 63.158 0.00 0.00 0.00 4.85
2829 2879 0.693049 AACCCTCCAGCAGTTACCAG 59.307 55.000 0.00 0.00 0.00 4.00
2830 2880 0.400213 CAACCCTCCAGCAGTTACCA 59.600 55.000 0.00 0.00 0.00 3.25
2831 2881 0.960861 GCAACCCTCCAGCAGTTACC 60.961 60.000 0.00 0.00 0.00 2.85
2832 2882 0.960861 GGCAACCCTCCAGCAGTTAC 60.961 60.000 0.00 0.00 0.00 2.50
2833 2883 1.378762 GGCAACCCTCCAGCAGTTA 59.621 57.895 0.00 0.00 0.00 2.24
2834 2884 2.116125 GGCAACCCTCCAGCAGTT 59.884 61.111 0.00 0.00 0.00 3.16
2835 2885 4.335647 CGGCAACCCTCCAGCAGT 62.336 66.667 0.00 0.00 0.00 4.40
2845 2895 3.876589 TTCTCTGACCGCGGCAACC 62.877 63.158 28.58 12.87 0.00 3.77
2846 2896 2.357034 TTCTCTGACCGCGGCAAC 60.357 61.111 28.58 17.72 0.00 4.17
2847 2897 2.048222 CTTCTCTGACCGCGGCAA 60.048 61.111 28.58 13.30 0.00 4.52
2848 2898 2.492449 CTTCTTCTCTGACCGCGGCA 62.492 60.000 28.58 22.73 0.00 5.69
2849 2899 1.807573 CTTCTTCTCTGACCGCGGC 60.808 63.158 28.58 19.01 0.00 6.53
2850 2900 0.456995 GTCTTCTTCTCTGACCGCGG 60.457 60.000 26.86 26.86 0.00 6.46
2851 2901 0.241213 TGTCTTCTTCTCTGACCGCG 59.759 55.000 0.00 0.00 0.00 6.46
2852 2902 2.333014 CTTGTCTTCTTCTCTGACCGC 58.667 52.381 0.00 0.00 0.00 5.68
2853 2903 2.353208 CCCTTGTCTTCTTCTCTGACCG 60.353 54.545 0.00 0.00 0.00 4.79
2854 2904 2.614229 GCCCTTGTCTTCTTCTCTGACC 60.614 54.545 0.00 0.00 0.00 4.02
2855 2905 2.301583 AGCCCTTGTCTTCTTCTCTGAC 59.698 50.000 0.00 0.00 0.00 3.51
2856 2906 2.614259 AGCCCTTGTCTTCTTCTCTGA 58.386 47.619 0.00 0.00 0.00 3.27
2857 2907 3.415457 AAGCCCTTGTCTTCTTCTCTG 57.585 47.619 0.00 0.00 0.00 3.35
2858 2908 5.308237 TCTTTAAGCCCTTGTCTTCTTCTCT 59.692 40.000 0.00 0.00 0.00 3.10
2859 2909 5.552178 TCTTTAAGCCCTTGTCTTCTTCTC 58.448 41.667 0.00 0.00 0.00 2.87
2860 2910 5.555966 CTCTTTAAGCCCTTGTCTTCTTCT 58.444 41.667 0.00 0.00 0.00 2.85
2861 2911 4.155099 GCTCTTTAAGCCCTTGTCTTCTTC 59.845 45.833 0.00 0.00 45.92 2.87
2862 2912 4.075682 GCTCTTTAAGCCCTTGTCTTCTT 58.924 43.478 0.00 0.00 45.92 2.52
2863 2913 3.680490 GCTCTTTAAGCCCTTGTCTTCT 58.320 45.455 0.00 0.00 45.92 2.85
2875 2925 4.436584 CGCCTGTTGAAGATGCTCTTTAAG 60.437 45.833 4.24 0.00 36.73 1.85
2876 2926 3.436704 CGCCTGTTGAAGATGCTCTTTAA 59.563 43.478 0.86 0.92 36.73 1.52
2877 2927 3.002791 CGCCTGTTGAAGATGCTCTTTA 58.997 45.455 0.86 0.00 36.73 1.85
2878 2928 1.808945 CGCCTGTTGAAGATGCTCTTT 59.191 47.619 0.86 0.00 36.73 2.52
2883 2933 0.039256 TTTGCGCCTGTTGAAGATGC 60.039 50.000 4.18 0.00 0.00 3.91
2889 2939 6.701841 TGTAAAAATTATTTTGCGCCTGTTGA 59.298 30.769 4.18 0.00 42.09 3.18
3026 3080 1.867233 GCATGGTAGTATCGGTTGCTG 59.133 52.381 0.00 0.00 0.00 4.41
3083 3165 2.910319 TGGTACTGGGCTTGAACTATGT 59.090 45.455 0.00 0.00 0.00 2.29
3100 3183 7.083875 GTACCGTATGTACTAGTTTGTGGTA 57.916 40.000 0.00 4.17 45.32 3.25
3179 3265 0.542232 CCGAGGGGGAGGACGATAAT 60.542 60.000 0.00 0.00 38.47 1.28
3192 3284 3.295800 GGACTACACCACCGAGGG 58.704 66.667 0.00 0.00 43.89 4.30
3218 3310 0.736325 CTCGGTGGGATGACACGTTC 60.736 60.000 0.00 0.00 42.23 3.95
3264 3356 1.739067 GCTTAGTGCGAACTGGGATT 58.261 50.000 6.22 0.00 0.00 3.01
3323 3417 3.807631 TTCTGCACTGCGAGCCGTT 62.808 57.895 0.00 0.00 0.00 4.44
3324 3418 4.299547 TTCTGCACTGCGAGCCGT 62.300 61.111 0.00 0.00 0.00 5.68
3398 3506 1.746615 CATGCCGAGGTGGACAAGG 60.747 63.158 0.00 0.00 42.00 3.61
3401 3509 2.662596 GTCATGCCGAGGTGGACA 59.337 61.111 0.00 0.00 42.00 4.02
3457 3573 1.153647 CCGCTGCTAATCACCGACA 60.154 57.895 0.00 0.00 0.00 4.35
3504 3620 4.193334 CTCGGATGCTCGGACGCA 62.193 66.667 4.95 4.95 45.10 5.24
3515 3631 3.459232 TCGCAGATGAATTTCTCGGAT 57.541 42.857 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.