Multiple sequence alignment - TraesCS4A01G220500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G220500 chr4A 100.000 2746 0 0 1 2746 524177707 524180452 0.000000e+00 5072.0
1 TraesCS4A01G220500 chr4A 97.048 1084 31 1 842 1924 522973603 522972520 0.000000e+00 1823.0
2 TraesCS4A01G220500 chr4A 83.333 84 11 2 1699 1782 522972496 522972416 1.050000e-09 75.0
3 TraesCS4A01G220500 chr4B 91.903 1865 88 31 774 2619 104341610 104343430 0.000000e+00 2549.0
4 TraesCS4A01G220500 chr4B 93.849 943 36 7 842 1782 103891296 103890374 0.000000e+00 1400.0
5 TraesCS4A01G220500 chr4B 93.849 943 36 7 842 1782 104131758 104130836 0.000000e+00 1400.0
6 TraesCS4A01G220500 chr4B 93.750 944 36 8 842 1782 104005851 104004928 0.000000e+00 1395.0
7 TraesCS4A01G220500 chr4B 91.975 162 12 1 174 335 104341206 104341366 2.750000e-55 226.0
8 TraesCS4A01G220500 chr4D 96.506 1059 36 1 774 1832 70365016 70366073 0.000000e+00 1749.0
9 TraesCS4A01G220500 chr4D 95.945 937 35 2 842 1778 70343609 70342676 0.000000e+00 1517.0
10 TraesCS4A01G220500 chr4D 95.238 945 39 5 842 1784 70337901 70336961 0.000000e+00 1491.0
11 TraesCS4A01G220500 chr4D 83.693 417 52 14 2136 2545 456505169 456504762 2.000000e-101 379.0
12 TraesCS4A01G220500 chr4D 91.416 233 14 4 1828 2059 70372065 70372292 5.710000e-82 315.0
13 TraesCS4A01G220500 chr4D 94.872 39 0 2 1983 2021 70372282 70372318 2.950000e-05 60.2
14 TraesCS4A01G220500 chr5D 84.493 690 72 19 962 1627 276931946 276931268 0.000000e+00 649.0
15 TraesCS4A01G220500 chr5D 82.783 424 57 15 2136 2549 75364027 75363610 5.590000e-97 364.0
16 TraesCS4A01G220500 chr7A 87.546 273 32 2 505 777 486173055 486173325 5.710000e-82 315.0
17 TraesCS4A01G220500 chr7A 87.226 274 33 2 505 778 452751407 452751136 7.380000e-81 311.0
18 TraesCS4A01G220500 chr5B 87.687 268 31 2 505 772 602935761 602935496 7.380000e-81 311.0
19 TraesCS4A01G220500 chr5B 86.081 273 35 3 506 778 38176103 38175834 9.620000e-75 291.0
20 TraesCS4A01G220500 chr2B 86.545 275 35 2 506 780 77947863 77948135 4.440000e-78 302.0
21 TraesCS4A01G220500 chr2B 79.717 424 64 19 2136 2549 152499439 152499028 1.240000e-73 287.0
22 TraesCS4A01G220500 chr2B 82.332 283 38 11 2246 2520 757869819 757870097 4.570000e-58 235.0
23 TraesCS4A01G220500 chr2B 81.915 282 38 12 2246 2519 757819923 757820199 2.750000e-55 226.0
24 TraesCS4A01G220500 chr2B 80.519 154 23 6 2275 2425 152653890 152654039 8.040000e-21 111.0
25 TraesCS4A01G220500 chr2D 86.765 272 32 4 506 776 202604673 202604405 1.600000e-77 300.0
26 TraesCS4A01G220500 chr3A 85.870 276 37 2 507 782 672097536 672097263 2.670000e-75 292.0
27 TraesCS4A01G220500 chr3A 78.632 351 54 16 2211 2549 56744175 56743834 2.140000e-51 213.0
28 TraesCS4A01G220500 chr6B 86.029 272 36 2 506 777 375363501 375363232 9.620000e-75 291.0
29 TraesCS4A01G220500 chr6D 86.029 272 34 4 505 775 98444234 98443966 3.460000e-74 289.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G220500 chr4A 524177707 524180452 2745 False 5072.0 5072 100.0000 1 2746 1 chr4A.!!$F1 2745
1 TraesCS4A01G220500 chr4A 522972416 522973603 1187 True 949.0 1823 90.1905 842 1924 2 chr4A.!!$R1 1082
2 TraesCS4A01G220500 chr4B 103890374 103891296 922 True 1400.0 1400 93.8490 842 1782 1 chr4B.!!$R1 940
3 TraesCS4A01G220500 chr4B 104130836 104131758 922 True 1400.0 1400 93.8490 842 1782 1 chr4B.!!$R3 940
4 TraesCS4A01G220500 chr4B 104004928 104005851 923 True 1395.0 1395 93.7500 842 1782 1 chr4B.!!$R2 940
5 TraesCS4A01G220500 chr4B 104341206 104343430 2224 False 1387.5 2549 91.9390 174 2619 2 chr4B.!!$F1 2445
6 TraesCS4A01G220500 chr4D 70365016 70366073 1057 False 1749.0 1749 96.5060 774 1832 1 chr4D.!!$F1 1058
7 TraesCS4A01G220500 chr4D 70342676 70343609 933 True 1517.0 1517 95.9450 842 1778 1 chr4D.!!$R2 936
8 TraesCS4A01G220500 chr4D 70336961 70337901 940 True 1491.0 1491 95.2380 842 1784 1 chr4D.!!$R1 942
9 TraesCS4A01G220500 chr5D 276931268 276931946 678 True 649.0 649 84.4930 962 1627 1 chr5D.!!$R2 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.107654 GGCCGGTTGTAGATGCTCTT 60.108 55.0 1.9 0.0 0.0 2.85 F
343 360 0.317160 TGGATGACGACAGTGGACAC 59.683 55.0 0.0 0.0 0.0 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1050 1186 1.078143 ACGAAGGGAAGCAGATGCC 60.078 57.895 0.14 0.0 43.38 4.40 R
2099 2257 1.137479 TGTTATTTAGTCGCCCCCGAG 59.863 52.381 0.00 0.0 45.38 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.785258 GCCATGACGAAGCCGAAC 59.215 61.111 0.00 0.00 39.50 3.95
18 19 3.081133 CCATGACGAAGCCGAACG 58.919 61.111 0.00 0.00 39.50 3.95
19 20 1.445410 CCATGACGAAGCCGAACGA 60.445 57.895 0.00 0.00 39.50 3.85
20 21 1.413767 CCATGACGAAGCCGAACGAG 61.414 60.000 0.00 0.00 39.50 4.18
21 22 1.805945 ATGACGAAGCCGAACGAGC 60.806 57.895 0.00 0.00 39.50 5.03
22 23 3.533691 GACGAAGCCGAACGAGCG 61.534 66.667 0.00 0.00 39.50 5.03
43 44 4.436998 CGGAGCCGGTCGAAGCTT 62.437 66.667 1.90 0.00 40.11 3.74
44 45 2.509561 GGAGCCGGTCGAAGCTTC 60.510 66.667 16.84 16.84 40.11 3.86
55 56 2.710339 CGAAGCTTCGCTCAAAGATC 57.290 50.000 33.46 0.00 44.26 2.75
56 57 1.325943 CGAAGCTTCGCTCAAAGATCC 59.674 52.381 33.46 0.00 44.26 3.36
57 58 2.626840 GAAGCTTCGCTCAAAGATCCT 58.373 47.619 11.40 0.00 38.25 3.24
58 59 2.777832 AGCTTCGCTCAAAGATCCTT 57.222 45.000 0.00 0.00 30.62 3.36
59 60 2.354259 AGCTTCGCTCAAAGATCCTTG 58.646 47.619 0.00 0.00 30.62 3.61
60 61 1.202121 GCTTCGCTCAAAGATCCTTGC 60.202 52.381 0.00 0.00 0.00 4.01
61 62 1.399791 CTTCGCTCAAAGATCCTTGCC 59.600 52.381 0.00 0.00 0.00 4.52
62 63 0.615331 TCGCTCAAAGATCCTTGCCT 59.385 50.000 0.00 0.00 0.00 4.75
63 64 1.003580 TCGCTCAAAGATCCTTGCCTT 59.996 47.619 0.00 0.00 0.00 4.35
64 65 1.131883 CGCTCAAAGATCCTTGCCTTG 59.868 52.381 0.00 0.00 0.00 3.61
65 66 1.135170 GCTCAAAGATCCTTGCCTTGC 60.135 52.381 0.00 0.00 0.00 4.01
66 67 2.165167 CTCAAAGATCCTTGCCTTGCA 58.835 47.619 0.00 0.00 36.47 4.08
67 68 2.758979 CTCAAAGATCCTTGCCTTGCAT 59.241 45.455 0.00 0.00 38.76 3.96
68 69 3.949754 CTCAAAGATCCTTGCCTTGCATA 59.050 43.478 0.00 0.00 38.76 3.14
69 70 4.539726 TCAAAGATCCTTGCCTTGCATAT 58.460 39.130 0.00 0.00 38.76 1.78
70 71 5.693961 TCAAAGATCCTTGCCTTGCATATA 58.306 37.500 0.00 0.00 38.76 0.86
71 72 6.128486 TCAAAGATCCTTGCCTTGCATATAA 58.872 36.000 0.00 0.00 38.76 0.98
72 73 6.779049 TCAAAGATCCTTGCCTTGCATATAAT 59.221 34.615 0.00 0.00 38.76 1.28
73 74 7.944000 TCAAAGATCCTTGCCTTGCATATAATA 59.056 33.333 0.00 0.00 38.76 0.98
74 75 8.579006 CAAAGATCCTTGCCTTGCATATAATAA 58.421 33.333 0.00 0.00 38.76 1.40
75 76 8.890410 AAGATCCTTGCCTTGCATATAATAAT 57.110 30.769 0.00 0.00 38.76 1.28
76 77 9.979897 AAGATCCTTGCCTTGCATATAATAATA 57.020 29.630 0.00 0.00 38.76 0.98
102 103 9.729281 ATGCATTTGATTTTTCTAATTTGAGGT 57.271 25.926 0.00 0.00 0.00 3.85
108 109 8.220755 TGATTTTTCTAATTTGAGGTATCCGG 57.779 34.615 0.00 0.00 0.00 5.14
109 110 8.050325 TGATTTTTCTAATTTGAGGTATCCGGA 58.950 33.333 6.61 6.61 0.00 5.14
110 111 8.996651 ATTTTTCTAATTTGAGGTATCCGGAT 57.003 30.769 22.95 22.95 0.00 4.18
111 112 7.801716 TTTTCTAATTTGAGGTATCCGGATG 57.198 36.000 27.55 5.42 0.00 3.51
112 113 6.494666 TTCTAATTTGAGGTATCCGGATGT 57.505 37.500 27.55 11.33 0.00 3.06
113 114 5.853936 TCTAATTTGAGGTATCCGGATGTG 58.146 41.667 27.55 3.40 0.00 3.21
114 115 4.771114 AATTTGAGGTATCCGGATGTGA 57.229 40.909 27.55 3.90 0.00 3.58
115 116 3.536956 TTTGAGGTATCCGGATGTGAC 57.463 47.619 27.55 16.81 0.00 3.67
116 117 2.454336 TGAGGTATCCGGATGTGACT 57.546 50.000 27.55 17.83 0.00 3.41
117 118 2.307768 TGAGGTATCCGGATGTGACTC 58.692 52.381 27.55 24.19 0.00 3.36
118 119 1.267261 GAGGTATCCGGATGTGACTCG 59.733 57.143 27.55 0.00 0.00 4.18
119 120 1.030457 GGTATCCGGATGTGACTCGT 58.970 55.000 27.55 0.00 0.00 4.18
120 121 1.001597 GGTATCCGGATGTGACTCGTC 60.002 57.143 27.55 0.89 0.00 4.20
121 122 1.001597 GTATCCGGATGTGACTCGTCC 60.002 57.143 27.55 5.79 45.97 4.79
122 123 1.392710 ATCCGGATGTGACTCGTCCC 61.393 60.000 18.33 0.00 46.53 4.46
123 124 2.494918 CGGATGTGACTCGTCCCC 59.505 66.667 9.64 0.00 46.53 4.81
124 125 2.494918 GGATGTGACTCGTCCCCG 59.505 66.667 4.66 0.00 44.26 5.73
125 126 2.494918 GATGTGACTCGTCCCCGG 59.505 66.667 0.00 0.00 33.95 5.73
126 127 3.075005 ATGTGACTCGTCCCCGGG 61.075 66.667 15.80 15.80 41.55 5.73
134 135 4.770874 CGTCCCCGGGCGTTTGAT 62.771 66.667 17.73 0.00 0.00 2.57
135 136 3.131478 GTCCCCGGGCGTTTGATG 61.131 66.667 17.73 0.00 0.00 3.07
136 137 3.323286 TCCCCGGGCGTTTGATGA 61.323 61.111 17.73 0.20 0.00 2.92
137 138 2.824041 CCCCGGGCGTTTGATGAG 60.824 66.667 17.73 0.00 0.00 2.90
138 139 2.046314 CCCGGGCGTTTGATGAGT 60.046 61.111 8.08 0.00 0.00 3.41
139 140 2.106683 CCCGGGCGTTTGATGAGTC 61.107 63.158 8.08 0.00 0.00 3.36
140 141 2.452813 CCGGGCGTTTGATGAGTCG 61.453 63.158 0.00 0.00 0.00 4.18
141 142 2.452813 CGGGCGTTTGATGAGTCGG 61.453 63.158 0.00 0.00 0.00 4.79
142 143 1.079405 GGGCGTTTGATGAGTCGGA 60.079 57.895 0.00 0.00 0.00 4.55
143 144 0.462047 GGGCGTTTGATGAGTCGGAT 60.462 55.000 0.00 0.00 0.00 4.18
144 145 1.369625 GGCGTTTGATGAGTCGGATT 58.630 50.000 0.00 0.00 0.00 3.01
145 146 1.737793 GGCGTTTGATGAGTCGGATTT 59.262 47.619 0.00 0.00 0.00 2.17
146 147 2.476185 GGCGTTTGATGAGTCGGATTTG 60.476 50.000 0.00 0.00 0.00 2.32
147 148 2.774007 CGTTTGATGAGTCGGATTTGC 58.226 47.619 0.00 0.00 0.00 3.68
148 149 2.159430 CGTTTGATGAGTCGGATTTGCA 59.841 45.455 0.00 0.00 0.00 4.08
149 150 3.181507 CGTTTGATGAGTCGGATTTGCAT 60.182 43.478 0.00 0.00 0.00 3.96
150 151 4.033932 CGTTTGATGAGTCGGATTTGCATA 59.966 41.667 0.00 0.00 0.00 3.14
151 152 5.505286 GTTTGATGAGTCGGATTTGCATAG 58.495 41.667 0.00 0.00 0.00 2.23
152 153 3.732212 TGATGAGTCGGATTTGCATAGG 58.268 45.455 0.00 0.00 0.00 2.57
153 154 1.953559 TGAGTCGGATTTGCATAGGC 58.046 50.000 0.00 0.00 41.68 3.93
154 155 1.230324 GAGTCGGATTTGCATAGGCC 58.770 55.000 0.00 0.00 40.13 5.19
155 156 0.532862 AGTCGGATTTGCATAGGCCG 60.533 55.000 12.80 12.80 43.11 6.13
156 157 1.227823 TCGGATTTGCATAGGCCGG 60.228 57.895 16.92 0.00 42.10 6.13
157 158 1.525995 CGGATTTGCATAGGCCGGT 60.526 57.895 1.90 0.00 40.13 5.28
158 159 1.101049 CGGATTTGCATAGGCCGGTT 61.101 55.000 1.90 0.00 40.13 4.44
159 160 0.385390 GGATTTGCATAGGCCGGTTG 59.615 55.000 1.90 0.00 40.13 3.77
160 161 1.102978 GATTTGCATAGGCCGGTTGT 58.897 50.000 1.90 0.00 40.13 3.32
161 162 2.294074 GATTTGCATAGGCCGGTTGTA 58.706 47.619 1.90 0.00 40.13 2.41
162 163 1.745232 TTTGCATAGGCCGGTTGTAG 58.255 50.000 1.90 0.00 40.13 2.74
163 164 0.906066 TTGCATAGGCCGGTTGTAGA 59.094 50.000 1.90 0.00 40.13 2.59
164 165 1.128200 TGCATAGGCCGGTTGTAGAT 58.872 50.000 1.90 0.00 40.13 1.98
165 166 1.202639 TGCATAGGCCGGTTGTAGATG 60.203 52.381 1.90 0.00 40.13 2.90
166 167 1.512926 CATAGGCCGGTTGTAGATGC 58.487 55.000 1.90 0.00 0.00 3.91
167 168 1.070758 CATAGGCCGGTTGTAGATGCT 59.929 52.381 1.90 0.00 0.00 3.79
168 169 0.750850 TAGGCCGGTTGTAGATGCTC 59.249 55.000 1.90 0.00 0.00 4.26
169 170 0.978146 AGGCCGGTTGTAGATGCTCT 60.978 55.000 1.90 0.00 0.00 4.09
170 171 0.107654 GGCCGGTTGTAGATGCTCTT 60.108 55.000 1.90 0.00 0.00 2.85
171 172 1.138266 GGCCGGTTGTAGATGCTCTTA 59.862 52.381 1.90 0.00 0.00 2.10
172 173 2.474816 GCCGGTTGTAGATGCTCTTAG 58.525 52.381 1.90 0.00 0.00 2.18
173 174 2.159085 GCCGGTTGTAGATGCTCTTAGT 60.159 50.000 1.90 0.00 0.00 2.24
174 175 3.679083 GCCGGTTGTAGATGCTCTTAGTT 60.679 47.826 1.90 0.00 0.00 2.24
175 176 4.441079 GCCGGTTGTAGATGCTCTTAGTTA 60.441 45.833 1.90 0.00 0.00 2.24
176 177 5.657474 CCGGTTGTAGATGCTCTTAGTTAA 58.343 41.667 0.00 0.00 0.00 2.01
177 178 6.103997 CCGGTTGTAGATGCTCTTAGTTAAA 58.896 40.000 0.00 0.00 0.00 1.52
178 179 6.592607 CCGGTTGTAGATGCTCTTAGTTAAAA 59.407 38.462 0.00 0.00 0.00 1.52
179 180 7.201530 CCGGTTGTAGATGCTCTTAGTTAAAAG 60.202 40.741 0.00 0.00 0.00 2.27
219 220 8.989653 AACTTTGTTTAATTTTGTCCTTTCGA 57.010 26.923 0.00 0.00 0.00 3.71
222 223 9.848172 CTTTGTTTAATTTTGTCCTTTCGATTG 57.152 29.630 0.00 0.00 0.00 2.67
343 360 0.317160 TGGATGACGACAGTGGACAC 59.683 55.000 0.00 0.00 0.00 3.67
358 375 1.214367 GACACGTCCGTTGTTGATGT 58.786 50.000 0.00 0.00 32.27 3.06
360 377 0.384230 CACGTCCGTTGTTGATGTGC 60.384 55.000 0.00 0.00 41.36 4.57
361 378 0.812014 ACGTCCGTTGTTGATGTGCA 60.812 50.000 0.00 0.00 30.96 4.57
374 391 3.835779 TGATGTGCATTTTGATCAACCG 58.164 40.909 7.89 0.50 0.00 4.44
379 397 2.226674 TGCATTTTGATCAACCGCGTTA 59.773 40.909 7.89 0.00 0.00 3.18
382 400 4.334443 CATTTTGATCAACCGCGTTAGAG 58.666 43.478 7.89 0.00 0.00 2.43
392 410 0.997196 CGCGTTAGAGTTGCCCTAAC 59.003 55.000 0.00 0.00 41.36 2.34
401 419 2.812011 GAGTTGCCCTAACGTGATTTGT 59.188 45.455 0.00 0.00 44.15 2.83
446 557 2.586648 ACTACAAGCTCCCCCAAAAG 57.413 50.000 0.00 0.00 0.00 2.27
458 569 5.130975 GCTCCCCCAAAAGAAATCCAAATAT 59.869 40.000 0.00 0.00 0.00 1.28
459 570 6.558488 TCCCCCAAAAGAAATCCAAATATG 57.442 37.500 0.00 0.00 0.00 1.78
460 571 6.267635 TCCCCCAAAAGAAATCCAAATATGA 58.732 36.000 0.00 0.00 0.00 2.15
461 572 6.732862 TCCCCCAAAAGAAATCCAAATATGAA 59.267 34.615 0.00 0.00 0.00 2.57
465 576 8.266473 CCCAAAAGAAATCCAAATATGAATCCA 58.734 33.333 0.00 0.00 0.00 3.41
474 585 9.887862 AATCCAAATATGAATCCAAATACCTCT 57.112 29.630 0.00 0.00 0.00 3.69
475 586 8.924511 TCCAAATATGAATCCAAATACCTCTC 57.075 34.615 0.00 0.00 0.00 3.20
476 587 8.727149 TCCAAATATGAATCCAAATACCTCTCT 58.273 33.333 0.00 0.00 0.00 3.10
477 588 8.790718 CCAAATATGAATCCAAATACCTCTCTG 58.209 37.037 0.00 0.00 0.00 3.35
478 589 9.565090 CAAATATGAATCCAAATACCTCTCTGA 57.435 33.333 0.00 0.00 0.00 3.27
483 594 9.790344 ATGAATCCAAATACCTCTCTGATTAAG 57.210 33.333 0.00 0.00 0.00 1.85
484 595 8.213679 TGAATCCAAATACCTCTCTGATTAAGG 58.786 37.037 0.00 0.00 36.21 2.69
485 596 6.500589 TCCAAATACCTCTCTGATTAAGGG 57.499 41.667 6.03 0.00 34.31 3.95
486 597 5.066593 CCAAATACCTCTCTGATTAAGGGC 58.933 45.833 6.03 0.00 34.31 5.19
487 598 5.163152 CCAAATACCTCTCTGATTAAGGGCT 60.163 44.000 6.03 0.00 34.31 5.19
488 599 5.816955 AATACCTCTCTGATTAAGGGCTC 57.183 43.478 6.03 0.00 34.31 4.70
489 600 2.403561 ACCTCTCTGATTAAGGGCTCC 58.596 52.381 6.03 0.00 34.31 4.70
490 601 2.022527 ACCTCTCTGATTAAGGGCTCCT 60.023 50.000 6.03 0.00 34.31 3.69
491 602 3.044894 CCTCTCTGATTAAGGGCTCCTT 58.955 50.000 10.76 10.76 46.63 3.36
492 603 3.457749 CCTCTCTGATTAAGGGCTCCTTT 59.542 47.826 11.15 0.00 41.69 3.11
493 604 4.450053 CTCTCTGATTAAGGGCTCCTTTG 58.550 47.826 11.15 0.33 41.69 2.77
494 605 4.104086 TCTCTGATTAAGGGCTCCTTTGA 58.896 43.478 11.15 2.95 41.69 2.69
495 606 4.723789 TCTCTGATTAAGGGCTCCTTTGAT 59.276 41.667 11.15 6.91 41.69 2.57
496 607 5.192522 TCTCTGATTAAGGGCTCCTTTGATT 59.807 40.000 11.15 0.00 41.69 2.57
497 608 5.440610 TCTGATTAAGGGCTCCTTTGATTC 58.559 41.667 11.15 5.47 41.69 2.52
498 609 5.192522 TCTGATTAAGGGCTCCTTTGATTCT 59.807 40.000 11.15 0.00 41.69 2.40
499 610 6.386927 TCTGATTAAGGGCTCCTTTGATTCTA 59.613 38.462 11.15 0.00 41.69 2.10
500 611 6.969043 TGATTAAGGGCTCCTTTGATTCTAA 58.031 36.000 11.15 0.13 41.69 2.10
501 612 7.410174 TGATTAAGGGCTCCTTTGATTCTAAA 58.590 34.615 11.15 0.00 41.69 1.85
502 613 7.893302 TGATTAAGGGCTCCTTTGATTCTAAAA 59.107 33.333 11.15 0.00 41.69 1.52
503 614 8.664669 ATTAAGGGCTCCTTTGATTCTAAAAA 57.335 30.769 11.15 0.00 41.69 1.94
552 663 7.831691 TTTTCTATGTTGGTCCTTTGATTCA 57.168 32.000 0.00 0.00 0.00 2.57
553 664 8.421249 TTTTCTATGTTGGTCCTTTGATTCAT 57.579 30.769 0.00 0.00 0.00 2.57
554 665 9.527157 TTTTCTATGTTGGTCCTTTGATTCATA 57.473 29.630 0.00 0.00 0.00 2.15
555 666 8.737168 TTCTATGTTGGTCCTTTGATTCATAG 57.263 34.615 0.00 0.00 36.55 2.23
556 667 7.282585 TCTATGTTGGTCCTTTGATTCATAGG 58.717 38.462 14.95 14.95 36.17 2.57
557 668 5.512942 TGTTGGTCCTTTGATTCATAGGA 57.487 39.130 18.57 18.57 38.81 2.94
558 669 6.078456 TGTTGGTCCTTTGATTCATAGGAT 57.922 37.500 23.34 0.00 41.93 3.24
559 670 6.493166 TGTTGGTCCTTTGATTCATAGGATT 58.507 36.000 23.34 0.00 41.93 3.01
560 671 7.638444 TGTTGGTCCTTTGATTCATAGGATTA 58.362 34.615 23.34 14.97 41.93 1.75
561 672 7.775093 TGTTGGTCCTTTGATTCATAGGATTAG 59.225 37.037 23.34 1.35 41.93 1.73
562 673 7.690454 TGGTCCTTTGATTCATAGGATTAGA 57.310 36.000 23.34 9.48 41.93 2.10
563 674 8.280258 TGGTCCTTTGATTCATAGGATTAGAT 57.720 34.615 23.34 0.00 41.93 1.98
564 675 8.727149 TGGTCCTTTGATTCATAGGATTAGATT 58.273 33.333 23.34 0.00 41.93 2.40
565 676 9.579932 GGTCCTTTGATTCATAGGATTAGATTT 57.420 33.333 23.34 0.00 41.93 2.17
633 744 7.898014 AGGAAATTTAATATCCACTCCAACC 57.102 36.000 0.00 0.00 35.62 3.77
634 745 7.652554 AGGAAATTTAATATCCACTCCAACCT 58.347 34.615 0.00 0.00 35.62 3.50
635 746 8.122481 AGGAAATTTAATATCCACTCCAACCTT 58.878 33.333 0.00 0.00 35.62 3.50
636 747 8.758829 GGAAATTTAATATCCACTCCAACCTTT 58.241 33.333 0.00 0.00 33.30 3.11
666 777 6.726230 CAATTTCATTGTTTTTCATGTGGCA 58.274 32.000 0.00 0.00 35.57 4.92
667 778 7.364200 CAATTTCATTGTTTTTCATGTGGCAT 58.636 30.769 0.00 0.00 35.57 4.40
668 779 6.542574 TTTCATTGTTTTTCATGTGGCATC 57.457 33.333 0.00 0.00 0.00 3.91
669 780 4.236147 TCATTGTTTTTCATGTGGCATCG 58.764 39.130 0.00 0.00 0.00 3.84
670 781 3.998099 TTGTTTTTCATGTGGCATCGA 57.002 38.095 0.00 0.00 0.00 3.59
671 782 3.998099 TGTTTTTCATGTGGCATCGAA 57.002 38.095 0.00 0.00 0.00 3.71
672 783 3.637432 TGTTTTTCATGTGGCATCGAAC 58.363 40.909 0.00 0.00 0.00 3.95
673 784 3.067320 TGTTTTTCATGTGGCATCGAACA 59.933 39.130 0.00 0.00 0.00 3.18
674 785 2.987413 TTTCATGTGGCATCGAACAC 57.013 45.000 10.28 10.28 38.08 3.32
675 786 2.183478 TTCATGTGGCATCGAACACT 57.817 45.000 15.98 3.41 38.39 3.55
676 787 1.725641 TCATGTGGCATCGAACACTC 58.274 50.000 15.98 0.77 38.39 3.51
677 788 1.001860 TCATGTGGCATCGAACACTCA 59.998 47.619 15.98 5.62 38.39 3.41
678 789 2.011947 CATGTGGCATCGAACACTCAT 58.988 47.619 15.98 7.32 38.39 2.90
679 790 1.441738 TGTGGCATCGAACACTCATG 58.558 50.000 15.98 0.00 38.39 3.07
680 791 1.001860 TGTGGCATCGAACACTCATGA 59.998 47.619 15.98 0.00 38.39 3.07
681 792 1.394917 GTGGCATCGAACACTCATGAC 59.605 52.381 10.02 0.00 34.84 3.06
682 793 1.276138 TGGCATCGAACACTCATGACT 59.724 47.619 0.00 0.00 0.00 3.41
683 794 2.495669 TGGCATCGAACACTCATGACTA 59.504 45.455 0.00 0.00 0.00 2.59
684 795 3.056179 TGGCATCGAACACTCATGACTAA 60.056 43.478 0.00 0.00 0.00 2.24
685 796 4.122776 GGCATCGAACACTCATGACTAAT 58.877 43.478 0.00 0.00 0.00 1.73
686 797 4.572389 GGCATCGAACACTCATGACTAATT 59.428 41.667 0.00 0.00 0.00 1.40
687 798 5.277058 GGCATCGAACACTCATGACTAATTC 60.277 44.000 0.00 0.00 0.00 2.17
688 799 5.521735 GCATCGAACACTCATGACTAATTCT 59.478 40.000 0.00 0.00 0.00 2.40
689 800 6.697455 GCATCGAACACTCATGACTAATTCTA 59.303 38.462 0.00 0.00 0.00 2.10
690 801 7.383572 GCATCGAACACTCATGACTAATTCTAT 59.616 37.037 0.00 0.00 0.00 1.98
691 802 9.899226 CATCGAACACTCATGACTAATTCTATA 57.101 33.333 0.00 0.00 0.00 1.31
710 821 8.940768 TTCTATAAAATTTAAGTGGGCATTGC 57.059 30.769 0.00 0.00 0.00 3.56
721 832 2.877691 GCATTGCCACTCGAACCC 59.122 61.111 0.00 0.00 0.00 4.11
722 833 1.675641 GCATTGCCACTCGAACCCT 60.676 57.895 0.00 0.00 0.00 4.34
723 834 0.392461 GCATTGCCACTCGAACCCTA 60.392 55.000 0.00 0.00 0.00 3.53
724 835 1.747206 GCATTGCCACTCGAACCCTAT 60.747 52.381 0.00 0.00 0.00 2.57
725 836 2.484770 GCATTGCCACTCGAACCCTATA 60.485 50.000 0.00 0.00 0.00 1.31
726 837 2.973694 TTGCCACTCGAACCCTATAC 57.026 50.000 0.00 0.00 0.00 1.47
727 838 1.855295 TGCCACTCGAACCCTATACA 58.145 50.000 0.00 0.00 0.00 2.29
728 839 2.394632 TGCCACTCGAACCCTATACAT 58.605 47.619 0.00 0.00 0.00 2.29
729 840 2.769663 TGCCACTCGAACCCTATACATT 59.230 45.455 0.00 0.00 0.00 2.71
730 841 3.199071 TGCCACTCGAACCCTATACATTT 59.801 43.478 0.00 0.00 0.00 2.32
731 842 4.196971 GCCACTCGAACCCTATACATTTT 58.803 43.478 0.00 0.00 0.00 1.82
732 843 4.272748 GCCACTCGAACCCTATACATTTTC 59.727 45.833 0.00 0.00 0.00 2.29
733 844 5.671493 CCACTCGAACCCTATACATTTTCT 58.329 41.667 0.00 0.00 0.00 2.52
734 845 6.684613 GCCACTCGAACCCTATACATTTTCTA 60.685 42.308 0.00 0.00 0.00 2.10
735 846 7.442656 CCACTCGAACCCTATACATTTTCTAT 58.557 38.462 0.00 0.00 0.00 1.98
736 847 7.931948 CCACTCGAACCCTATACATTTTCTATT 59.068 37.037 0.00 0.00 0.00 1.73
737 848 8.979574 CACTCGAACCCTATACATTTTCTATTC 58.020 37.037 0.00 0.00 0.00 1.75
738 849 8.148999 ACTCGAACCCTATACATTTTCTATTCC 58.851 37.037 0.00 0.00 0.00 3.01
739 850 8.258850 TCGAACCCTATACATTTTCTATTCCT 57.741 34.615 0.00 0.00 0.00 3.36
740 851 9.370930 TCGAACCCTATACATTTTCTATTCCTA 57.629 33.333 0.00 0.00 0.00 2.94
741 852 9.420551 CGAACCCTATACATTTTCTATTCCTAC 57.579 37.037 0.00 0.00 0.00 3.18
771 882 6.782082 AAAATCCTAGAAATCAAAGAGGCC 57.218 37.500 0.00 0.00 0.00 5.19
772 883 5.456921 AATCCTAGAAATCAAAGAGGCCA 57.543 39.130 5.01 0.00 0.00 5.36
781 892 5.505173 AATCAAAGAGGCCATAAATGTCG 57.495 39.130 5.01 0.00 0.00 4.35
783 894 2.348411 AAGAGGCCATAAATGTCGGG 57.652 50.000 5.01 0.00 0.00 5.14
784 895 1.213296 AGAGGCCATAAATGTCGGGT 58.787 50.000 5.01 0.00 0.00 5.28
807 918 2.215942 TCTCGACTGGGAGATGAACA 57.784 50.000 0.00 0.00 38.12 3.18
817 928 3.706594 TGGGAGATGAACACCTAGTGATC 59.293 47.826 0.96 0.00 36.96 2.92
821 932 4.096681 AGATGAACACCTAGTGATCCACA 58.903 43.478 0.96 0.00 35.04 4.17
839 950 4.879545 TCCACAGGTTCTGTTTTTCTGTAC 59.120 41.667 0.00 0.00 42.59 2.90
840 951 4.638421 CCACAGGTTCTGTTTTTCTGTACA 59.362 41.667 0.00 0.00 42.59 2.90
920 1033 1.283347 TCCAAGAGGATTCAGCAGCT 58.717 50.000 0.00 0.00 39.61 4.24
922 1035 2.015587 CCAAGAGGATTCAGCAGCTTC 58.984 52.381 0.00 0.00 36.89 3.86
928 1041 1.677217 GGATTCAGCAGCTTCGGTTCT 60.677 52.381 0.00 0.00 0.00 3.01
1186 1337 2.182791 CTGCGATGGTGCGAGACT 59.817 61.111 0.00 0.00 37.81 3.24
1284 1436 1.466167 GGACTACGCGTCTGTCTACAA 59.534 52.381 30.45 8.47 42.44 2.41
1946 2101 6.334102 TGGGTTGTAATTTTGATGTACACC 57.666 37.500 0.00 0.00 0.00 4.16
1962 2118 5.080337 TGTACACCCTTATTTTGCCATGAA 58.920 37.500 0.00 0.00 0.00 2.57
1973 2129 1.825090 TGCCATGAACAATCGCTTCT 58.175 45.000 0.00 0.00 0.00 2.85
1979 2135 5.728898 GCCATGAACAATCGCTTCTTAGAAG 60.729 44.000 16.93 16.93 0.00 2.85
1981 2137 6.092670 CCATGAACAATCGCTTCTTAGAAGAA 59.907 38.462 24.40 12.20 42.41 2.52
2014 2172 4.746535 TTATCAAGCAGACCCGATTACA 57.253 40.909 0.00 0.00 0.00 2.41
2025 2183 4.019681 AGACCCGATTACAATCTCCACAAA 60.020 41.667 0.81 0.00 33.24 2.83
2066 2224 5.920193 TGGGAAAAGATATTTGAGCCAAG 57.080 39.130 0.00 0.00 0.00 3.61
2070 2228 5.068329 GGAAAAGATATTTGAGCCAAGGAGG 59.932 44.000 0.00 0.00 41.84 4.30
2123 2281 3.349927 GGGGGCGACTAAATAACAAAGT 58.650 45.455 0.00 0.00 0.00 2.66
2124 2282 4.516323 GGGGGCGACTAAATAACAAAGTA 58.484 43.478 0.00 0.00 0.00 2.24
2130 2288 8.833493 GGGCGACTAAATAACAAAGTATACATT 58.167 33.333 5.50 0.00 0.00 2.71
2150 2308 6.176183 ACATTGAAAGGGAGACTTGTATGAG 58.824 40.000 0.00 0.00 39.96 2.90
2151 2309 4.207891 TGAAAGGGAGACTTGTATGAGC 57.792 45.455 0.00 0.00 39.96 4.26
2154 2312 3.396685 AGGGAGACTTGTATGAGCTCT 57.603 47.619 16.19 3.04 0.00 4.09
2155 2313 3.295973 AGGGAGACTTGTATGAGCTCTC 58.704 50.000 16.19 1.77 0.00 3.20
2157 2315 6.107816 AAGGGAGACTTGTATGAGCTCTCAT 61.108 44.000 16.19 15.72 44.30 2.90
2158 2316 6.865373 AAGGGAGACTTGTATGAGCTCTCATA 60.865 42.308 16.19 13.86 42.23 2.15
2159 2317 8.134885 AAGGGAGACTTGTATGAGCTCTCATAT 61.135 40.741 19.07 2.15 42.23 1.78
2177 2335 8.482852 TCTCATATTTATGTGAGATGGTGAGA 57.517 34.615 13.21 0.00 45.92 3.27
2178 2336 9.097946 TCTCATATTTATGTGAGATGGTGAGAT 57.902 33.333 13.21 0.00 45.92 2.75
2179 2337 9.368674 CTCATATTTATGTGAGATGGTGAGATC 57.631 37.037 10.02 0.00 45.46 2.75
2180 2338 8.873144 TCATATTTATGTGAGATGGTGAGATCA 58.127 33.333 0.00 0.00 35.26 2.92
2181 2339 9.498176 CATATTTATGTGAGATGGTGAGATCAA 57.502 33.333 0.00 0.00 0.00 2.57
2183 2341 8.618702 ATTTATGTGAGATGGTGAGATCAATC 57.381 34.615 0.00 0.00 0.00 2.67
2184 2342 4.412796 TGTGAGATGGTGAGATCAATCC 57.587 45.455 0.00 0.00 0.00 3.01
2185 2343 3.135348 TGTGAGATGGTGAGATCAATCCC 59.865 47.826 0.00 0.00 0.00 3.85
2186 2344 3.135348 GTGAGATGGTGAGATCAATCCCA 59.865 47.826 0.00 0.00 0.00 4.37
2187 2345 3.781965 TGAGATGGTGAGATCAATCCCAA 59.218 43.478 0.00 0.00 0.00 4.12
2188 2346 4.227982 TGAGATGGTGAGATCAATCCCAAA 59.772 41.667 0.00 0.00 0.00 3.28
2189 2347 5.195940 GAGATGGTGAGATCAATCCCAAAA 58.804 41.667 0.00 0.00 0.00 2.44
2190 2348 5.582953 AGATGGTGAGATCAATCCCAAAAA 58.417 37.500 0.00 0.00 0.00 1.94
2257 2415 7.008440 CAACATTCATGTGGTGTATGTCTAG 57.992 40.000 0.00 0.00 44.84 2.43
2289 2450 5.695851 AAAAATCAGCTCAAACTCGATGT 57.304 34.783 0.00 0.00 0.00 3.06
2301 2462 7.436673 GCTCAAACTCGATGTACATTTAGAGAT 59.563 37.037 28.16 20.11 0.00 2.75
2334 2495 8.540492 AGACAAATTCGAATGTAAATAGTAGCG 58.460 33.333 12.25 0.00 0.00 4.26
2346 2507 3.838244 ATAGTAGCGGCTTTGGATGAA 57.162 42.857 8.26 0.00 0.00 2.57
2358 2519 6.183360 CGGCTTTGGATGAATAGTCTTTTGAT 60.183 38.462 0.00 0.00 0.00 2.57
2369 2530 9.534565 TGAATAGTCTTTTGATACTATCTGCAC 57.465 33.333 0.00 0.00 37.82 4.57
2371 2532 9.757227 AATAGTCTTTTGATACTATCTGCACTC 57.243 33.333 0.00 0.00 37.82 3.51
2372 2533 7.175347 AGTCTTTTGATACTATCTGCACTCA 57.825 36.000 0.00 0.00 0.00 3.41
2375 2536 8.887717 GTCTTTTGATACTATCTGCACTCAATT 58.112 33.333 0.00 0.00 0.00 2.32
2549 2713 3.970640 GAGATCTCACCCAAATCTACCCT 59.029 47.826 18.11 0.00 30.04 4.34
2573 2737 2.540515 ACATAGATGCCAAACGACTCG 58.459 47.619 0.00 0.00 0.00 4.18
2577 2741 0.716108 GATGCCAAACGACTCGTCTG 59.284 55.000 4.17 0.60 39.99 3.51
2610 2774 6.200665 TCAGTGCAACAAAATTGACTTATTGC 59.799 34.615 9.97 9.97 41.43 3.56
2619 2783 7.968405 ACAAAATTGACTTATTGCGGAACTATC 59.032 33.333 0.00 0.00 0.00 2.08
2620 2784 7.865706 AAATTGACTTATTGCGGAACTATCT 57.134 32.000 0.00 0.00 0.00 1.98
2621 2785 7.484035 AATTGACTTATTGCGGAACTATCTC 57.516 36.000 0.00 0.00 0.00 2.75
2622 2786 5.854010 TGACTTATTGCGGAACTATCTCT 57.146 39.130 0.00 0.00 0.00 3.10
2623 2787 5.592054 TGACTTATTGCGGAACTATCTCTG 58.408 41.667 0.00 0.00 0.00 3.35
2624 2788 4.372656 ACTTATTGCGGAACTATCTCTGC 58.627 43.478 0.00 0.00 46.21 4.26
2625 2789 4.100189 ACTTATTGCGGAACTATCTCTGCT 59.900 41.667 0.00 0.00 46.19 4.24
2626 2790 2.586258 TTGCGGAACTATCTCTGCTC 57.414 50.000 6.03 0.00 46.19 4.26
2627 2791 0.747255 TGCGGAACTATCTCTGCTCC 59.253 55.000 6.03 0.00 46.19 4.70
2628 2792 1.036707 GCGGAACTATCTCTGCTCCT 58.963 55.000 0.00 0.00 43.26 3.69
2629 2793 2.231529 GCGGAACTATCTCTGCTCCTA 58.768 52.381 0.00 0.00 43.26 2.94
2630 2794 2.823154 GCGGAACTATCTCTGCTCCTAT 59.177 50.000 0.00 0.00 43.26 2.57
2631 2795 4.011023 GCGGAACTATCTCTGCTCCTATA 58.989 47.826 0.00 0.00 43.26 1.31
2632 2796 4.459685 GCGGAACTATCTCTGCTCCTATAA 59.540 45.833 0.00 0.00 43.26 0.98
2633 2797 5.047943 GCGGAACTATCTCTGCTCCTATAAA 60.048 44.000 0.00 0.00 43.26 1.40
2634 2798 6.516860 GCGGAACTATCTCTGCTCCTATAAAA 60.517 42.308 0.00 0.00 43.26 1.52
2635 2799 7.434492 CGGAACTATCTCTGCTCCTATAAAAA 58.566 38.462 0.00 0.00 0.00 1.94
2660 2824 7.918536 ATCTGAGTTGATGATAATGGTATGC 57.081 36.000 0.00 0.00 0.00 3.14
2661 2825 6.233434 TCTGAGTTGATGATAATGGTATGCC 58.767 40.000 0.00 0.00 0.00 4.40
2662 2826 6.043590 TCTGAGTTGATGATAATGGTATGCCT 59.956 38.462 0.16 0.00 35.27 4.75
2663 2827 5.999600 TGAGTTGATGATAATGGTATGCCTG 59.000 40.000 0.16 0.00 35.27 4.85
2664 2828 4.763793 AGTTGATGATAATGGTATGCCTGC 59.236 41.667 0.16 0.00 35.27 4.85
2665 2829 3.689347 TGATGATAATGGTATGCCTGCC 58.311 45.455 0.16 0.00 35.27 4.85
2666 2830 3.074242 TGATGATAATGGTATGCCTGCCA 59.926 43.478 0.56 0.56 41.76 4.92
2668 2832 3.689347 TGATAATGGTATGCCTGCCATC 58.311 45.455 11.78 2.14 46.01 3.51
2669 2833 3.331591 TGATAATGGTATGCCTGCCATCT 59.668 43.478 11.78 3.40 46.01 2.90
2670 2834 2.761786 AATGGTATGCCTGCCATCTT 57.238 45.000 11.78 0.00 46.01 2.40
2671 2835 1.991121 ATGGTATGCCTGCCATCTTG 58.009 50.000 5.78 0.00 43.65 3.02
2672 2836 0.106569 TGGTATGCCTGCCATCTTGG 60.107 55.000 0.16 0.00 36.70 3.61
2684 2848 3.199880 CCATCTTGGCTTTAGGATCGT 57.800 47.619 0.00 0.00 0.00 3.73
2685 2849 3.134458 CCATCTTGGCTTTAGGATCGTC 58.866 50.000 0.00 0.00 0.00 4.20
2686 2850 2.579207 TCTTGGCTTTAGGATCGTCG 57.421 50.000 0.00 0.00 0.00 5.12
2687 2851 1.136305 TCTTGGCTTTAGGATCGTCGG 59.864 52.381 0.00 0.00 0.00 4.79
2688 2852 1.136305 CTTGGCTTTAGGATCGTCGGA 59.864 52.381 0.00 0.00 0.00 4.55
2689 2853 1.410004 TGGCTTTAGGATCGTCGGAT 58.590 50.000 0.00 0.00 34.96 4.18
2690 2854 1.340248 TGGCTTTAGGATCGTCGGATC 59.660 52.381 0.00 0.00 46.85 3.36
2691 2855 1.614413 GGCTTTAGGATCGTCGGATCT 59.386 52.381 4.30 0.00 46.77 2.75
2692 2856 2.608261 GGCTTTAGGATCGTCGGATCTG 60.608 54.545 0.00 0.00 46.77 2.90
2693 2857 2.667137 CTTTAGGATCGTCGGATCTGC 58.333 52.381 0.00 0.00 46.77 4.26
2694 2858 1.687563 TTAGGATCGTCGGATCTGCA 58.312 50.000 0.00 0.00 46.77 4.41
2695 2859 1.911057 TAGGATCGTCGGATCTGCAT 58.089 50.000 0.00 0.00 46.77 3.96
2696 2860 1.043816 AGGATCGTCGGATCTGCATT 58.956 50.000 0.00 0.00 46.77 3.56
2697 2861 1.414181 AGGATCGTCGGATCTGCATTT 59.586 47.619 0.00 0.00 46.77 2.32
2698 2862 2.628178 AGGATCGTCGGATCTGCATTTA 59.372 45.455 0.00 0.00 46.77 1.40
2699 2863 3.069586 AGGATCGTCGGATCTGCATTTAA 59.930 43.478 0.00 0.00 46.77 1.52
2700 2864 3.997021 GGATCGTCGGATCTGCATTTAAT 59.003 43.478 0.00 0.00 46.77 1.40
2701 2865 4.143030 GGATCGTCGGATCTGCATTTAATG 60.143 45.833 0.00 0.00 46.77 1.90
2702 2866 4.667668 GATCGTCGGATCTGCATTTAATGC 60.668 45.833 21.59 21.59 46.30 3.56
2715 2879 5.654317 CATTTAATGCACAACACAAAGCA 57.346 34.783 0.00 0.00 41.73 3.91
2716 2880 6.045698 CATTTAATGCACAACACAAAGCAA 57.954 33.333 0.00 0.00 40.76 3.91
2717 2881 6.660722 CATTTAATGCACAACACAAAGCAAT 58.339 32.000 0.00 0.00 40.76 3.56
2718 2882 7.794880 CATTTAATGCACAACACAAAGCAATA 58.205 30.769 0.00 0.00 40.76 1.90
2719 2883 7.959689 TTTAATGCACAACACAAAGCAATAT 57.040 28.000 0.00 0.00 40.76 1.28
2720 2884 5.849357 AATGCACAACACAAAGCAATATG 57.151 34.783 0.00 0.00 40.76 1.78
2721 2885 3.651206 TGCACAACACAAAGCAATATGG 58.349 40.909 0.00 0.00 33.48 2.74
2722 2886 2.995258 GCACAACACAAAGCAATATGGG 59.005 45.455 0.00 0.00 0.00 4.00
2723 2887 2.995258 CACAACACAAAGCAATATGGGC 59.005 45.455 0.00 0.00 0.00 5.36
2724 2888 2.632028 ACAACACAAAGCAATATGGGCA 59.368 40.909 2.84 0.00 0.00 5.36
2725 2889 3.070734 ACAACACAAAGCAATATGGGCAA 59.929 39.130 2.84 0.00 0.00 4.52
2726 2890 4.255301 CAACACAAAGCAATATGGGCAAT 58.745 39.130 2.84 0.00 0.00 3.56
2727 2891 4.556592 ACACAAAGCAATATGGGCAATT 57.443 36.364 2.84 0.00 0.00 2.32
2728 2892 4.909001 ACACAAAGCAATATGGGCAATTT 58.091 34.783 2.84 0.00 0.00 1.82
2729 2893 5.315348 ACACAAAGCAATATGGGCAATTTT 58.685 33.333 2.84 0.00 0.00 1.82
2730 2894 6.471146 ACACAAAGCAATATGGGCAATTTTA 58.529 32.000 2.84 0.00 0.00 1.52
2731 2895 7.111466 ACACAAAGCAATATGGGCAATTTTAT 58.889 30.769 2.84 0.00 0.00 1.40
2732 2896 8.263640 ACACAAAGCAATATGGGCAATTTTATA 58.736 29.630 2.84 0.00 0.00 0.98
2733 2897 8.767085 CACAAAGCAATATGGGCAATTTTATAG 58.233 33.333 2.84 0.00 0.00 1.31
2734 2898 8.703743 ACAAAGCAATATGGGCAATTTTATAGA 58.296 29.630 2.84 0.00 0.00 1.98
2735 2899 9.545105 CAAAGCAATATGGGCAATTTTATAGAA 57.455 29.630 2.84 0.00 0.00 2.10
2737 2901 9.768662 AAGCAATATGGGCAATTTTATAGAAAG 57.231 29.630 2.84 0.00 0.00 2.62
2738 2902 9.146586 AGCAATATGGGCAATTTTATAGAAAGA 57.853 29.630 2.84 0.00 0.00 2.52
2739 2903 9.196552 GCAATATGGGCAATTTTATAGAAAGAC 57.803 33.333 0.00 0.00 0.00 3.01
2740 2904 9.398170 CAATATGGGCAATTTTATAGAAAGACG 57.602 33.333 0.00 0.00 0.00 4.18
2741 2905 5.243426 TGGGCAATTTTATAGAAAGACGC 57.757 39.130 0.00 0.00 0.00 5.19
2742 2906 4.097286 TGGGCAATTTTATAGAAAGACGCC 59.903 41.667 8.97 8.97 34.97 5.68
2743 2907 4.499188 GGGCAATTTTATAGAAAGACGCCC 60.499 45.833 16.79 16.79 42.13 6.13
2744 2908 4.279659 GCAATTTTATAGAAAGACGCCCG 58.720 43.478 0.00 0.00 0.00 6.13
2745 2909 4.034742 GCAATTTTATAGAAAGACGCCCGA 59.965 41.667 0.00 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.785258 GTTCGGCTTCGTCATGGC 59.215 61.111 0.00 0.00 35.06 4.40
1 2 1.413767 CTCGTTCGGCTTCGTCATGG 61.414 60.000 0.00 0.00 35.06 3.66
2 3 1.991430 CTCGTTCGGCTTCGTCATG 59.009 57.895 0.00 0.00 35.06 3.07
4 5 2.430244 GCTCGTTCGGCTTCGTCA 60.430 61.111 0.00 0.00 35.06 4.35
5 6 3.533691 CGCTCGTTCGGCTTCGTC 61.534 66.667 0.00 0.00 35.06 4.20
23 24 4.856607 CTTCGACCGGCTCCGCTC 62.857 72.222 0.00 0.00 38.24 5.03
26 27 4.436998 AAGCTTCGACCGGCTCCG 62.437 66.667 0.00 2.70 37.87 4.63
27 28 2.509561 GAAGCTTCGACCGGCTCC 60.510 66.667 11.40 0.00 37.87 4.70
41 42 1.399791 GGCAAGGATCTTTGAGCGAAG 59.600 52.381 20.77 0.00 0.00 3.79
42 43 1.003580 AGGCAAGGATCTTTGAGCGAA 59.996 47.619 20.77 0.00 0.00 4.70
43 44 0.615331 AGGCAAGGATCTTTGAGCGA 59.385 50.000 20.77 0.00 0.00 4.93
44 45 1.131883 CAAGGCAAGGATCTTTGAGCG 59.868 52.381 20.77 2.58 0.00 5.03
45 46 1.135170 GCAAGGCAAGGATCTTTGAGC 60.135 52.381 20.77 13.55 0.00 4.26
46 47 2.165167 TGCAAGGCAAGGATCTTTGAG 58.835 47.619 20.77 8.22 34.76 3.02
47 48 2.291209 TGCAAGGCAAGGATCTTTGA 57.709 45.000 20.77 0.00 34.76 2.69
48 49 4.931661 ATATGCAAGGCAAGGATCTTTG 57.068 40.909 12.97 12.97 43.62 2.77
49 50 8.710749 TTATTATATGCAAGGCAAGGATCTTT 57.289 30.769 0.00 0.00 43.62 2.52
50 51 8.890410 ATTATTATATGCAAGGCAAGGATCTT 57.110 30.769 0.00 0.00 43.62 2.40
76 77 9.729281 ACCTCAAATTAGAAAAATCAAATGCAT 57.271 25.926 0.00 0.00 0.00 3.96
82 83 8.682710 CCGGATACCTCAAATTAGAAAAATCAA 58.317 33.333 0.00 0.00 0.00 2.57
83 84 8.050325 TCCGGATACCTCAAATTAGAAAAATCA 58.950 33.333 0.00 0.00 0.00 2.57
84 85 8.446599 TCCGGATACCTCAAATTAGAAAAATC 57.553 34.615 0.00 0.00 0.00 2.17
85 86 8.850156 CATCCGGATACCTCAAATTAGAAAAAT 58.150 33.333 18.63 0.00 0.00 1.82
86 87 7.832187 ACATCCGGATACCTCAAATTAGAAAAA 59.168 33.333 18.63 0.00 0.00 1.94
87 88 7.282224 CACATCCGGATACCTCAAATTAGAAAA 59.718 37.037 18.63 0.00 0.00 2.29
88 89 6.765989 CACATCCGGATACCTCAAATTAGAAA 59.234 38.462 18.63 0.00 0.00 2.52
89 90 6.099125 TCACATCCGGATACCTCAAATTAGAA 59.901 38.462 18.63 0.00 0.00 2.10
90 91 5.600898 TCACATCCGGATACCTCAAATTAGA 59.399 40.000 18.63 0.00 0.00 2.10
91 92 5.696724 GTCACATCCGGATACCTCAAATTAG 59.303 44.000 18.63 2.30 0.00 1.73
92 93 5.365605 AGTCACATCCGGATACCTCAAATTA 59.634 40.000 18.63 0.00 0.00 1.40
93 94 4.164221 AGTCACATCCGGATACCTCAAATT 59.836 41.667 18.63 0.00 0.00 1.82
94 95 3.711704 AGTCACATCCGGATACCTCAAAT 59.288 43.478 18.63 0.00 0.00 2.32
95 96 3.104512 AGTCACATCCGGATACCTCAAA 58.895 45.455 18.63 0.00 0.00 2.69
96 97 2.693591 GAGTCACATCCGGATACCTCAA 59.306 50.000 18.63 0.00 0.00 3.02
97 98 2.307768 GAGTCACATCCGGATACCTCA 58.692 52.381 18.63 0.00 0.00 3.86
98 99 1.267261 CGAGTCACATCCGGATACCTC 59.733 57.143 18.63 17.05 0.00 3.85
99 100 1.319541 CGAGTCACATCCGGATACCT 58.680 55.000 18.63 10.21 0.00 3.08
100 101 1.001597 GACGAGTCACATCCGGATACC 60.002 57.143 18.63 5.19 0.00 2.73
101 102 1.001597 GGACGAGTCACATCCGGATAC 60.002 57.143 18.63 12.38 0.00 2.24
102 103 1.315690 GGACGAGTCACATCCGGATA 58.684 55.000 18.63 0.00 0.00 2.59
103 104 1.392710 GGGACGAGTCACATCCGGAT 61.393 60.000 12.38 12.38 32.90 4.18
104 105 2.050350 GGGACGAGTCACATCCGGA 61.050 63.158 6.61 6.61 32.90 5.14
105 106 2.494918 GGGACGAGTCACATCCGG 59.505 66.667 0.00 0.00 32.90 5.14
106 107 2.494918 GGGGACGAGTCACATCCG 59.505 66.667 7.84 0.00 33.84 4.18
118 119 3.131478 CATCAAACGCCCGGGGAC 61.131 66.667 25.28 5.09 0.00 4.46
119 120 3.323286 TCATCAAACGCCCGGGGA 61.323 61.111 25.28 11.20 0.00 4.81
120 121 2.824041 CTCATCAAACGCCCGGGG 60.824 66.667 25.28 15.33 0.00 5.73
121 122 2.046314 ACTCATCAAACGCCCGGG 60.046 61.111 19.09 19.09 0.00 5.73
122 123 2.452813 CGACTCATCAAACGCCCGG 61.453 63.158 0.00 0.00 0.00 5.73
123 124 2.452813 CCGACTCATCAAACGCCCG 61.453 63.158 0.00 0.00 0.00 6.13
124 125 0.462047 ATCCGACTCATCAAACGCCC 60.462 55.000 0.00 0.00 0.00 6.13
125 126 1.369625 AATCCGACTCATCAAACGCC 58.630 50.000 0.00 0.00 0.00 5.68
126 127 2.774007 CAAATCCGACTCATCAAACGC 58.226 47.619 0.00 0.00 0.00 4.84
127 128 2.159430 TGCAAATCCGACTCATCAAACG 59.841 45.455 0.00 0.00 0.00 3.60
128 129 3.829886 TGCAAATCCGACTCATCAAAC 57.170 42.857 0.00 0.00 0.00 2.93
129 130 4.576053 CCTATGCAAATCCGACTCATCAAA 59.424 41.667 0.00 0.00 0.00 2.69
130 131 4.129380 CCTATGCAAATCCGACTCATCAA 58.871 43.478 0.00 0.00 0.00 2.57
131 132 3.732212 CCTATGCAAATCCGACTCATCA 58.268 45.455 0.00 0.00 0.00 3.07
132 133 2.481952 GCCTATGCAAATCCGACTCATC 59.518 50.000 0.00 0.00 37.47 2.92
133 134 2.498167 GCCTATGCAAATCCGACTCAT 58.502 47.619 0.00 0.00 37.47 2.90
134 135 1.475034 GGCCTATGCAAATCCGACTCA 60.475 52.381 0.00 0.00 40.13 3.41
135 136 1.230324 GGCCTATGCAAATCCGACTC 58.770 55.000 0.00 0.00 40.13 3.36
136 137 0.532862 CGGCCTATGCAAATCCGACT 60.533 55.000 12.71 0.00 42.43 4.18
137 138 1.507141 CCGGCCTATGCAAATCCGAC 61.507 60.000 17.72 0.00 42.43 4.79
138 139 1.227823 CCGGCCTATGCAAATCCGA 60.228 57.895 17.72 0.00 42.43 4.55
139 140 1.101049 AACCGGCCTATGCAAATCCG 61.101 55.000 0.00 11.51 40.13 4.18
140 141 0.385390 CAACCGGCCTATGCAAATCC 59.615 55.000 0.00 0.00 40.13 3.01
141 142 1.102978 ACAACCGGCCTATGCAAATC 58.897 50.000 0.00 0.00 40.13 2.17
142 143 2.092646 TCTACAACCGGCCTATGCAAAT 60.093 45.455 0.00 0.00 40.13 2.32
143 144 1.279558 TCTACAACCGGCCTATGCAAA 59.720 47.619 0.00 0.00 40.13 3.68
144 145 0.906066 TCTACAACCGGCCTATGCAA 59.094 50.000 0.00 0.00 40.13 4.08
145 146 1.128200 ATCTACAACCGGCCTATGCA 58.872 50.000 0.00 0.00 40.13 3.96
146 147 1.512926 CATCTACAACCGGCCTATGC 58.487 55.000 0.00 0.00 0.00 3.14
147 148 1.070758 AGCATCTACAACCGGCCTATG 59.929 52.381 0.00 0.00 0.00 2.23
148 149 1.344763 GAGCATCTACAACCGGCCTAT 59.655 52.381 0.00 0.00 0.00 2.57
149 150 0.750850 GAGCATCTACAACCGGCCTA 59.249 55.000 0.00 0.00 0.00 3.93
150 151 1.522569 GAGCATCTACAACCGGCCT 59.477 57.895 0.00 0.00 0.00 5.19
151 152 4.126524 GAGCATCTACAACCGGCC 57.873 61.111 0.00 0.00 0.00 6.13
164 165 9.569122 ACTAAACCATTCTTTTAACTAAGAGCA 57.431 29.630 0.00 0.00 35.69 4.26
287 288 6.834168 AATGTCCTATCAAATTTGAACGGT 57.166 33.333 23.91 10.71 41.13 4.83
343 360 0.516877 ATGCACATCAACAACGGACG 59.483 50.000 0.00 0.00 0.00 4.79
347 364 4.680567 TGATCAAAATGCACATCAACAACG 59.319 37.500 0.00 0.00 0.00 4.10
358 375 0.595588 ACGCGGTTGATCAAAATGCA 59.404 45.000 20.89 0.00 0.00 3.96
360 377 4.142902 ACTCTAACGCGGTTGATCAAAATG 60.143 41.667 12.47 4.14 0.00 2.32
361 378 4.000988 ACTCTAACGCGGTTGATCAAAAT 58.999 39.130 12.47 0.00 0.00 1.82
379 397 3.074412 CAAATCACGTTAGGGCAACTCT 58.926 45.455 0.00 0.00 34.77 3.24
382 400 2.812011 AGACAAATCACGTTAGGGCAAC 59.188 45.455 0.00 0.00 0.00 4.17
431 475 2.234661 GGATTTCTTTTGGGGGAGCTTG 59.765 50.000 0.00 0.00 0.00 4.01
433 477 1.432807 TGGATTTCTTTTGGGGGAGCT 59.567 47.619 0.00 0.00 0.00 4.09
434 478 1.937191 TGGATTTCTTTTGGGGGAGC 58.063 50.000 0.00 0.00 0.00 4.70
435 479 6.383726 TCATATTTGGATTTCTTTTGGGGGAG 59.616 38.462 0.00 0.00 0.00 4.30
436 480 6.267635 TCATATTTGGATTTCTTTTGGGGGA 58.732 36.000 0.00 0.00 0.00 4.81
458 569 8.213679 CCTTAATCAGAGAGGTATTTGGATTCA 58.786 37.037 0.00 0.00 0.00 2.57
459 570 7.663493 CCCTTAATCAGAGAGGTATTTGGATTC 59.337 40.741 0.00 0.00 0.00 2.52
460 571 7.521669 CCCTTAATCAGAGAGGTATTTGGATT 58.478 38.462 0.00 0.00 0.00 3.01
461 572 6.466470 GCCCTTAATCAGAGAGGTATTTGGAT 60.466 42.308 0.00 0.00 0.00 3.41
465 576 5.072464 GGAGCCCTTAATCAGAGAGGTATTT 59.928 44.000 0.00 0.00 0.00 1.40
467 578 4.140567 AGGAGCCCTTAATCAGAGAGGTAT 60.141 45.833 0.00 0.00 0.00 2.73
468 579 3.207777 AGGAGCCCTTAATCAGAGAGGTA 59.792 47.826 0.00 0.00 0.00 3.08
469 580 2.022527 AGGAGCCCTTAATCAGAGAGGT 60.023 50.000 0.00 0.00 0.00 3.85
470 581 2.688477 AGGAGCCCTTAATCAGAGAGG 58.312 52.381 0.00 0.00 0.00 3.69
471 582 4.163078 TCAAAGGAGCCCTTAATCAGAGAG 59.837 45.833 6.88 0.00 43.92 3.20
472 583 4.104086 TCAAAGGAGCCCTTAATCAGAGA 58.896 43.478 6.88 0.00 43.92 3.10
473 584 4.494091 TCAAAGGAGCCCTTAATCAGAG 57.506 45.455 6.88 0.00 43.92 3.35
474 585 5.192522 AGAATCAAAGGAGCCCTTAATCAGA 59.807 40.000 6.88 2.64 43.92 3.27
475 586 5.444176 AGAATCAAAGGAGCCCTTAATCAG 58.556 41.667 6.88 0.00 43.92 2.90
476 587 5.456921 AGAATCAAAGGAGCCCTTAATCA 57.543 39.130 6.88 0.00 43.92 2.57
477 588 7.881775 TTTAGAATCAAAGGAGCCCTTAATC 57.118 36.000 6.88 4.37 43.92 1.75
478 589 8.664669 TTTTTAGAATCAAAGGAGCCCTTAAT 57.335 30.769 6.88 2.57 43.92 1.40
527 638 8.243961 TGAATCAAAGGACCAACATAGAAAAA 57.756 30.769 0.00 0.00 0.00 1.94
528 639 7.831691 TGAATCAAAGGACCAACATAGAAAA 57.168 32.000 0.00 0.00 0.00 2.29
529 640 9.177608 CTATGAATCAAAGGACCAACATAGAAA 57.822 33.333 0.00 0.00 38.53 2.52
530 641 7.775093 CCTATGAATCAAAGGACCAACATAGAA 59.225 37.037 0.00 0.00 38.53 2.10
531 642 7.127186 TCCTATGAATCAAAGGACCAACATAGA 59.873 37.037 0.00 0.00 38.53 1.98
532 643 7.282585 TCCTATGAATCAAAGGACCAACATAG 58.717 38.462 0.00 0.00 34.46 2.23
533 644 7.206789 TCCTATGAATCAAAGGACCAACATA 57.793 36.000 0.00 0.00 34.46 2.29
534 645 6.078456 TCCTATGAATCAAAGGACCAACAT 57.922 37.500 0.00 0.00 34.46 2.71
535 646 5.512942 TCCTATGAATCAAAGGACCAACA 57.487 39.130 0.00 0.00 34.46 3.33
536 647 7.993183 TCTAATCCTATGAATCAAAGGACCAAC 59.007 37.037 0.00 0.00 42.08 3.77
537 648 8.101309 TCTAATCCTATGAATCAAAGGACCAA 57.899 34.615 0.00 0.00 42.08 3.67
538 649 7.690454 TCTAATCCTATGAATCAAAGGACCA 57.310 36.000 0.00 0.00 42.08 4.02
539 650 9.579932 AAATCTAATCCTATGAATCAAAGGACC 57.420 33.333 0.00 0.00 42.08 4.46
607 718 9.588096 GGTTGGAGTGGATATTAAATTTCCTAT 57.412 33.333 0.00 0.00 32.38 2.57
608 719 8.787818 AGGTTGGAGTGGATATTAAATTTCCTA 58.212 33.333 0.00 0.00 32.38 2.94
609 720 7.652554 AGGTTGGAGTGGATATTAAATTTCCT 58.347 34.615 0.00 0.00 32.38 3.36
610 721 7.898014 AGGTTGGAGTGGATATTAAATTTCC 57.102 36.000 0.00 0.00 0.00 3.13
643 754 6.939132 TGCCACATGAAAAACAATGAAATT 57.061 29.167 0.00 0.00 36.63 1.82
644 755 6.128499 CGATGCCACATGAAAAACAATGAAAT 60.128 34.615 0.00 0.00 0.00 2.17
645 756 5.177142 CGATGCCACATGAAAAACAATGAAA 59.823 36.000 0.00 0.00 0.00 2.69
646 757 4.685165 CGATGCCACATGAAAAACAATGAA 59.315 37.500 0.00 0.00 0.00 2.57
647 758 4.022503 TCGATGCCACATGAAAAACAATGA 60.023 37.500 0.00 0.00 0.00 2.57
648 759 4.236147 TCGATGCCACATGAAAAACAATG 58.764 39.130 0.00 0.00 0.00 2.82
649 760 4.517952 TCGATGCCACATGAAAAACAAT 57.482 36.364 0.00 0.00 0.00 2.71
650 761 3.998099 TCGATGCCACATGAAAAACAA 57.002 38.095 0.00 0.00 0.00 2.83
651 762 3.067320 TGTTCGATGCCACATGAAAAACA 59.933 39.130 0.00 0.00 0.00 2.83
652 763 3.425193 GTGTTCGATGCCACATGAAAAAC 59.575 43.478 0.00 0.00 0.00 2.43
653 764 3.317711 AGTGTTCGATGCCACATGAAAAA 59.682 39.130 0.00 0.00 33.99 1.94
654 765 2.884012 AGTGTTCGATGCCACATGAAAA 59.116 40.909 0.00 0.00 33.99 2.29
655 766 2.483877 GAGTGTTCGATGCCACATGAAA 59.516 45.455 0.00 0.00 33.99 2.69
656 767 2.076100 GAGTGTTCGATGCCACATGAA 58.924 47.619 0.00 0.00 33.99 2.57
657 768 1.001860 TGAGTGTTCGATGCCACATGA 59.998 47.619 0.00 0.00 33.99 3.07
658 769 1.441738 TGAGTGTTCGATGCCACATG 58.558 50.000 11.47 0.00 33.99 3.21
659 770 2.011947 CATGAGTGTTCGATGCCACAT 58.988 47.619 11.47 2.30 33.99 3.21
660 771 1.001860 TCATGAGTGTTCGATGCCACA 59.998 47.619 11.47 0.00 33.99 4.17
661 772 1.394917 GTCATGAGTGTTCGATGCCAC 59.605 52.381 0.00 0.00 0.00 5.01
662 773 1.276138 AGTCATGAGTGTTCGATGCCA 59.724 47.619 1.14 0.00 0.00 4.92
663 774 2.015736 AGTCATGAGTGTTCGATGCC 57.984 50.000 1.14 0.00 0.00 4.40
664 775 5.521735 AGAATTAGTCATGAGTGTTCGATGC 59.478 40.000 13.54 0.00 0.00 3.91
665 776 8.809159 ATAGAATTAGTCATGAGTGTTCGATG 57.191 34.615 13.54 0.00 0.00 3.84
684 795 9.546428 GCAATGCCCACTTAAATTTTATAGAAT 57.454 29.630 0.00 0.00 0.00 2.40
685 796 7.984617 GGCAATGCCCACTTAAATTTTATAGAA 59.015 33.333 14.47 0.00 44.06 2.10
686 797 7.496747 GGCAATGCCCACTTAAATTTTATAGA 58.503 34.615 14.47 0.00 44.06 1.98
687 798 7.713764 GGCAATGCCCACTTAAATTTTATAG 57.286 36.000 14.47 0.00 44.06 1.31
704 815 0.392461 TAGGGTTCGAGTGGCAATGC 60.392 55.000 0.00 0.00 0.00 3.56
705 816 2.332063 ATAGGGTTCGAGTGGCAATG 57.668 50.000 0.00 0.00 0.00 2.82
706 817 2.769663 TGTATAGGGTTCGAGTGGCAAT 59.230 45.455 0.00 0.00 0.00 3.56
707 818 2.181125 TGTATAGGGTTCGAGTGGCAA 58.819 47.619 0.00 0.00 0.00 4.52
708 819 1.855295 TGTATAGGGTTCGAGTGGCA 58.145 50.000 0.00 0.00 0.00 4.92
709 820 3.470645 AATGTATAGGGTTCGAGTGGC 57.529 47.619 0.00 0.00 0.00 5.01
710 821 5.671493 AGAAAATGTATAGGGTTCGAGTGG 58.329 41.667 0.00 0.00 0.00 4.00
711 822 8.888579 AATAGAAAATGTATAGGGTTCGAGTG 57.111 34.615 0.00 0.00 0.00 3.51
712 823 8.148999 GGAATAGAAAATGTATAGGGTTCGAGT 58.851 37.037 0.00 0.00 0.00 4.18
713 824 8.368668 AGGAATAGAAAATGTATAGGGTTCGAG 58.631 37.037 0.00 0.00 0.00 4.04
714 825 8.258850 AGGAATAGAAAATGTATAGGGTTCGA 57.741 34.615 0.00 0.00 0.00 3.71
715 826 9.420551 GTAGGAATAGAAAATGTATAGGGTTCG 57.579 37.037 0.00 0.00 0.00 3.95
745 856 8.749354 GGCCTCTTTGATTTCTAGGATTTTAAA 58.251 33.333 0.00 0.00 0.00 1.52
746 857 7.893302 TGGCCTCTTTGATTTCTAGGATTTTAA 59.107 33.333 3.32 0.00 0.00 1.52
747 858 7.410174 TGGCCTCTTTGATTTCTAGGATTTTA 58.590 34.615 3.32 0.00 0.00 1.52
748 859 6.256053 TGGCCTCTTTGATTTCTAGGATTTT 58.744 36.000 3.32 0.00 0.00 1.82
749 860 5.831103 TGGCCTCTTTGATTTCTAGGATTT 58.169 37.500 3.32 0.00 0.00 2.17
750 861 5.456921 TGGCCTCTTTGATTTCTAGGATT 57.543 39.130 3.32 0.00 0.00 3.01
751 862 5.659849 ATGGCCTCTTTGATTTCTAGGAT 57.340 39.130 3.32 0.00 0.00 3.24
752 863 6.575244 TTATGGCCTCTTTGATTTCTAGGA 57.425 37.500 3.32 0.00 0.00 2.94
753 864 7.286316 ACATTTATGGCCTCTTTGATTTCTAGG 59.714 37.037 3.32 0.00 0.00 3.02
754 865 8.230472 ACATTTATGGCCTCTTTGATTTCTAG 57.770 34.615 3.32 0.00 0.00 2.43
755 866 7.012327 CGACATTTATGGCCTCTTTGATTTCTA 59.988 37.037 3.32 0.00 29.87 2.10
756 867 6.183360 CGACATTTATGGCCTCTTTGATTTCT 60.183 38.462 3.32 0.00 29.87 2.52
757 868 5.973565 CGACATTTATGGCCTCTTTGATTTC 59.026 40.000 3.32 0.00 29.87 2.17
758 869 5.163519 CCGACATTTATGGCCTCTTTGATTT 60.164 40.000 3.32 0.00 29.87 2.17
759 870 4.339247 CCGACATTTATGGCCTCTTTGATT 59.661 41.667 3.32 0.00 29.87 2.57
760 871 3.885297 CCGACATTTATGGCCTCTTTGAT 59.115 43.478 3.32 0.00 29.87 2.57
761 872 3.278574 CCGACATTTATGGCCTCTTTGA 58.721 45.455 3.32 0.00 29.87 2.69
762 873 2.358898 CCCGACATTTATGGCCTCTTTG 59.641 50.000 3.32 0.00 29.87 2.77
763 874 2.025321 ACCCGACATTTATGGCCTCTTT 60.025 45.455 3.32 0.00 29.87 2.52
764 875 1.564348 ACCCGACATTTATGGCCTCTT 59.436 47.619 3.32 0.00 29.87 2.85
765 876 1.213296 ACCCGACATTTATGGCCTCT 58.787 50.000 3.32 0.00 29.87 3.69
766 877 1.947456 GAACCCGACATTTATGGCCTC 59.053 52.381 3.32 0.00 29.87 4.70
767 878 1.283613 TGAACCCGACATTTATGGCCT 59.716 47.619 3.32 0.00 29.87 5.19
768 879 1.757682 TGAACCCGACATTTATGGCC 58.242 50.000 0.00 0.00 29.87 5.36
769 880 3.214328 AGATGAACCCGACATTTATGGC 58.786 45.455 0.00 0.00 0.00 4.40
770 881 3.494626 CGAGATGAACCCGACATTTATGG 59.505 47.826 0.00 0.00 0.00 2.74
771 882 4.368315 TCGAGATGAACCCGACATTTATG 58.632 43.478 0.00 0.00 0.00 1.90
772 883 4.665833 TCGAGATGAACCCGACATTTAT 57.334 40.909 0.00 0.00 0.00 1.40
781 892 0.461961 CTCCCAGTCGAGATGAACCC 59.538 60.000 0.00 0.00 30.97 4.11
796 907 3.070302 GGATCACTAGGTGTTCATCTCCC 59.930 52.174 9.83 0.00 34.91 4.30
807 918 2.834549 CAGAACCTGTGGATCACTAGGT 59.165 50.000 12.81 12.81 42.78 3.08
817 928 4.638421 TGTACAGAAAAACAGAACCTGTGG 59.362 41.667 0.00 0.00 44.62 4.17
821 932 6.601613 TGTGATTGTACAGAAAAACAGAACCT 59.398 34.615 0.00 0.00 0.00 3.50
839 950 3.793129 GCATATTTGGACGGCTGTGATTG 60.793 47.826 0.80 0.00 0.00 2.67
840 951 2.358898 GCATATTTGGACGGCTGTGATT 59.641 45.455 0.80 0.00 0.00 2.57
881 992 2.743636 TTCTGTGGATTCACGTCTCC 57.256 50.000 0.00 0.00 46.42 3.71
936 1049 3.961414 TTCCACCCCAAGCCGTCC 61.961 66.667 0.00 0.00 0.00 4.79
941 1054 1.152830 TTCCAGTTCCACCCCAAGC 59.847 57.895 0.00 0.00 0.00 4.01
1050 1186 1.078143 ACGAAGGGAAGCAGATGCC 60.078 57.895 0.14 0.00 43.38 4.40
1284 1436 2.021068 CTCCATGGCGATCCACGTCT 62.021 60.000 6.96 0.00 46.92 4.18
1930 2085 9.646427 GCAAAATAAGGGTGTACATCAAAATTA 57.354 29.630 8.70 2.06 0.00 1.40
1946 2101 4.268405 GCGATTGTTCATGGCAAAATAAGG 59.732 41.667 0.00 0.00 36.63 2.69
1981 2137 9.822185 GGGTCTGCTTGATAAAATCATTATTTT 57.178 29.630 3.27 3.27 45.21 1.82
2003 2161 3.536956 TGTGGAGATTGTAATCGGGTC 57.463 47.619 0.00 0.00 40.35 4.46
2014 2172 7.713734 ACATTTCATCATCTTTGTGGAGATT 57.286 32.000 0.00 0.00 34.20 2.40
2070 2228 4.500116 GAGTGACGCGAGGGCCTC 62.500 72.222 24.06 24.06 35.02 4.70
2096 2254 2.012902 ATTTAGTCGCCCCCGAGTCG 62.013 60.000 5.29 5.29 43.27 4.18
2099 2257 1.137479 TGTTATTTAGTCGCCCCCGAG 59.863 52.381 0.00 0.00 45.38 4.63
2100 2258 1.193323 TGTTATTTAGTCGCCCCCGA 58.807 50.000 0.00 0.00 42.01 5.14
2101 2259 2.027003 TTGTTATTTAGTCGCCCCCG 57.973 50.000 0.00 0.00 0.00 5.73
2102 2260 3.349927 ACTTTGTTATTTAGTCGCCCCC 58.650 45.455 0.00 0.00 0.00 5.40
2103 2261 6.762661 TGTATACTTTGTTATTTAGTCGCCCC 59.237 38.462 4.17 0.00 0.00 5.80
2104 2262 7.775397 TGTATACTTTGTTATTTAGTCGCCC 57.225 36.000 4.17 0.00 0.00 6.13
2105 2263 9.646336 CAATGTATACTTTGTTATTTAGTCGCC 57.354 33.333 18.71 0.00 0.00 5.54
2123 2281 8.988060 TCATACAAGTCTCCCTTTCAATGTATA 58.012 33.333 0.00 0.00 0.00 1.47
2124 2282 7.861629 TCATACAAGTCTCCCTTTCAATGTAT 58.138 34.615 0.00 0.00 0.00 2.29
2130 2288 3.840666 AGCTCATACAAGTCTCCCTTTCA 59.159 43.478 0.00 0.00 0.00 2.69
2134 2292 3.295973 GAGAGCTCATACAAGTCTCCCT 58.704 50.000 17.77 0.00 0.00 4.20
2154 2312 8.873144 TGATCTCACCATCTCACATAAATATGA 58.127 33.333 7.40 0.00 37.15 2.15
2155 2313 9.498176 TTGATCTCACCATCTCACATAAATATG 57.502 33.333 0.00 0.00 39.55 1.78
2157 2315 9.716531 GATTGATCTCACCATCTCACATAAATA 57.283 33.333 0.00 0.00 0.00 1.40
2158 2316 7.664731 GGATTGATCTCACCATCTCACATAAAT 59.335 37.037 0.00 0.00 0.00 1.40
2159 2317 6.994496 GGATTGATCTCACCATCTCACATAAA 59.006 38.462 0.00 0.00 0.00 1.40
2160 2318 6.464892 GGGATTGATCTCACCATCTCACATAA 60.465 42.308 0.00 0.00 0.00 1.90
2163 2321 3.135348 GGGATTGATCTCACCATCTCACA 59.865 47.826 0.00 0.00 0.00 3.58
2164 2322 3.135348 TGGGATTGATCTCACCATCTCAC 59.865 47.826 0.00 0.00 30.96 3.51
2165 2323 3.387012 TGGGATTGATCTCACCATCTCA 58.613 45.455 0.00 0.00 30.96 3.27
2166 2324 4.428294 TTGGGATTGATCTCACCATCTC 57.572 45.455 0.00 0.00 36.93 2.75
2167 2325 4.868172 TTTGGGATTGATCTCACCATCT 57.132 40.909 0.00 0.00 36.93 2.90
2168 2326 5.920193 TTTTTGGGATTGATCTCACCATC 57.080 39.130 0.00 0.00 36.93 3.51
2221 2379 9.558396 ACCACATGAATGTTGTCAAATAATTTT 57.442 25.926 0.00 0.00 39.39 1.82
2272 2430 3.934457 TGTACATCGAGTTTGAGCTGA 57.066 42.857 0.00 0.00 0.00 4.26
2273 2431 5.536554 AAATGTACATCGAGTTTGAGCTG 57.463 39.130 9.23 0.00 0.00 4.24
2274 2432 6.631016 TCTAAATGTACATCGAGTTTGAGCT 58.369 36.000 9.23 0.00 0.00 4.09
2275 2433 6.752351 TCTCTAAATGTACATCGAGTTTGAGC 59.248 38.462 20.23 0.00 0.00 4.26
2276 2434 8.864069 ATCTCTAAATGTACATCGAGTTTGAG 57.136 34.615 20.23 18.50 0.00 3.02
2334 2495 6.515272 TCAAAAGACTATTCATCCAAAGCC 57.485 37.500 0.00 0.00 0.00 4.35
2346 2507 8.918116 TGAGTGCAGATAGTATCAAAAGACTAT 58.082 33.333 12.66 0.00 41.48 2.12
2422 2586 5.709631 TCAATGCTTGATGTACAGCCTTAAA 59.290 36.000 8.95 0.00 34.08 1.52
2537 2701 7.324178 GCATCTATGTACTAGGGTAGATTTGG 58.676 42.308 0.00 0.00 34.43 3.28
2541 2705 6.153942 TGGCATCTATGTACTAGGGTAGAT 57.846 41.667 0.00 0.00 36.21 1.98
2549 2713 5.505159 CGAGTCGTTTGGCATCTATGTACTA 60.505 44.000 3.82 0.00 0.00 1.82
2573 2737 1.882912 TGCACTGATCAACCACAGAC 58.117 50.000 0.00 0.00 37.54 3.51
2577 2741 3.435105 TTTGTTGCACTGATCAACCAC 57.565 42.857 0.00 0.00 42.17 4.16
2610 2774 6.576662 TTTATAGGAGCAGAGATAGTTCCG 57.423 41.667 0.00 0.00 40.80 4.30
2634 2798 8.790718 GCATACCATTATCATCAACTCAGATTT 58.209 33.333 0.00 0.00 0.00 2.17
2635 2799 7.392673 GGCATACCATTATCATCAACTCAGATT 59.607 37.037 0.00 0.00 35.26 2.40
2636 2800 6.883217 GGCATACCATTATCATCAACTCAGAT 59.117 38.462 0.00 0.00 35.26 2.90
2637 2801 6.043590 AGGCATACCATTATCATCAACTCAGA 59.956 38.462 0.00 0.00 39.06 3.27
2638 2802 6.148976 CAGGCATACCATTATCATCAACTCAG 59.851 42.308 0.00 0.00 39.06 3.35
2639 2803 5.999600 CAGGCATACCATTATCATCAACTCA 59.000 40.000 0.00 0.00 39.06 3.41
2640 2804 5.106396 GCAGGCATACCATTATCATCAACTC 60.106 44.000 0.00 0.00 39.06 3.01
2641 2805 4.763793 GCAGGCATACCATTATCATCAACT 59.236 41.667 0.00 0.00 39.06 3.16
2642 2806 4.082571 GGCAGGCATACCATTATCATCAAC 60.083 45.833 0.00 0.00 39.06 3.18
2643 2807 4.081406 GGCAGGCATACCATTATCATCAA 58.919 43.478 0.00 0.00 39.06 2.57
2644 2808 3.074242 TGGCAGGCATACCATTATCATCA 59.926 43.478 0.00 0.00 39.06 3.07
2645 2809 3.689347 TGGCAGGCATACCATTATCATC 58.311 45.455 0.00 0.00 39.06 2.92
2646 2810 3.812611 TGGCAGGCATACCATTATCAT 57.187 42.857 0.00 0.00 39.06 2.45
2647 2811 3.331591 AGATGGCAGGCATACCATTATCA 59.668 43.478 9.96 0.00 46.72 2.15
2648 2812 3.960571 AGATGGCAGGCATACCATTATC 58.039 45.455 9.96 0.00 46.72 1.75
2649 2813 4.084287 CAAGATGGCAGGCATACCATTAT 58.916 43.478 9.96 0.00 46.72 1.28
2650 2814 3.489355 CAAGATGGCAGGCATACCATTA 58.511 45.455 9.96 0.00 46.72 1.90
2651 2815 2.313317 CAAGATGGCAGGCATACCATT 58.687 47.619 9.96 0.16 46.72 3.16
2653 2817 0.106569 CCAAGATGGCAGGCATACCA 60.107 55.000 9.96 0.00 41.06 3.25
2654 2818 2.724520 CCAAGATGGCAGGCATACC 58.275 57.895 9.96 0.00 0.00 2.73
2664 2828 3.134458 GACGATCCTAAAGCCAAGATGG 58.866 50.000 0.00 0.00 41.55 3.51
2665 2829 2.797156 CGACGATCCTAAAGCCAAGATG 59.203 50.000 0.00 0.00 0.00 2.90
2666 2830 2.224066 CCGACGATCCTAAAGCCAAGAT 60.224 50.000 0.00 0.00 0.00 2.40
2667 2831 1.136305 CCGACGATCCTAAAGCCAAGA 59.864 52.381 0.00 0.00 0.00 3.02
2668 2832 1.136305 TCCGACGATCCTAAAGCCAAG 59.864 52.381 0.00 0.00 0.00 3.61
2669 2833 1.187974 TCCGACGATCCTAAAGCCAA 58.812 50.000 0.00 0.00 0.00 4.52
2670 2834 1.340248 GATCCGACGATCCTAAAGCCA 59.660 52.381 0.00 0.00 39.29 4.75
2671 2835 1.614413 AGATCCGACGATCCTAAAGCC 59.386 52.381 0.00 0.00 45.32 4.35
2672 2836 2.667137 CAGATCCGACGATCCTAAAGC 58.333 52.381 0.00 0.00 45.32 3.51
2673 2837 2.034685 TGCAGATCCGACGATCCTAAAG 59.965 50.000 0.00 0.00 45.32 1.85
2674 2838 2.028876 TGCAGATCCGACGATCCTAAA 58.971 47.619 0.00 0.00 45.32 1.85
2675 2839 1.687563 TGCAGATCCGACGATCCTAA 58.312 50.000 0.00 0.00 45.32 2.69
2676 2840 1.911057 ATGCAGATCCGACGATCCTA 58.089 50.000 0.00 0.00 45.32 2.94
2677 2841 1.043816 AATGCAGATCCGACGATCCT 58.956 50.000 0.00 0.00 45.32 3.24
2678 2842 1.871080 AAATGCAGATCCGACGATCC 58.129 50.000 0.00 0.00 45.32 3.36
2679 2843 4.950926 CATTAAATGCAGATCCGACGATC 58.049 43.478 0.00 0.00 44.65 3.69
2680 2844 4.997905 CATTAAATGCAGATCCGACGAT 57.002 40.909 0.00 0.00 0.00 3.73
2693 2857 5.654317 TGCTTTGTGTTGTGCATTAAATG 57.346 34.783 0.00 0.00 0.00 2.32
2694 2858 6.864360 ATTGCTTTGTGTTGTGCATTAAAT 57.136 29.167 0.00 0.00 35.27 1.40
2695 2859 7.095313 CCATATTGCTTTGTGTTGTGCATTAAA 60.095 33.333 0.00 0.00 35.27 1.52
2696 2860 6.368243 CCATATTGCTTTGTGTTGTGCATTAA 59.632 34.615 0.00 0.00 35.27 1.40
2697 2861 5.868258 CCATATTGCTTTGTGTTGTGCATTA 59.132 36.000 0.00 0.00 35.27 1.90
2698 2862 4.691685 CCATATTGCTTTGTGTTGTGCATT 59.308 37.500 0.00 0.00 35.27 3.56
2699 2863 4.247258 CCATATTGCTTTGTGTTGTGCAT 58.753 39.130 0.00 0.00 35.27 3.96
2700 2864 3.554544 CCCATATTGCTTTGTGTTGTGCA 60.555 43.478 0.00 0.00 0.00 4.57
2701 2865 2.995258 CCCATATTGCTTTGTGTTGTGC 59.005 45.455 0.00 0.00 0.00 4.57
2702 2866 2.995258 GCCCATATTGCTTTGTGTTGTG 59.005 45.455 0.00 0.00 0.00 3.33
2703 2867 2.632028 TGCCCATATTGCTTTGTGTTGT 59.368 40.909 0.00 0.00 0.00 3.32
2704 2868 3.316071 TGCCCATATTGCTTTGTGTTG 57.684 42.857 0.00 0.00 0.00 3.33
2705 2869 4.556592 ATTGCCCATATTGCTTTGTGTT 57.443 36.364 0.00 0.00 0.00 3.32
2706 2870 4.556592 AATTGCCCATATTGCTTTGTGT 57.443 36.364 0.00 0.00 0.00 3.72
2707 2871 5.883503 AAAATTGCCCATATTGCTTTGTG 57.116 34.783 0.00 0.00 0.00 3.33
2708 2872 8.703743 TCTATAAAATTGCCCATATTGCTTTGT 58.296 29.630 0.00 0.00 0.00 2.83
2709 2873 9.545105 TTCTATAAAATTGCCCATATTGCTTTG 57.455 29.630 0.00 0.00 0.00 2.77
2711 2875 9.768662 CTTTCTATAAAATTGCCCATATTGCTT 57.231 29.630 0.00 0.00 0.00 3.91
2712 2876 9.146586 TCTTTCTATAAAATTGCCCATATTGCT 57.853 29.630 0.00 0.00 0.00 3.91
2713 2877 9.196552 GTCTTTCTATAAAATTGCCCATATTGC 57.803 33.333 0.00 0.00 0.00 3.56
2714 2878 9.398170 CGTCTTTCTATAAAATTGCCCATATTG 57.602 33.333 0.00 0.00 0.00 1.90
2715 2879 8.082242 GCGTCTTTCTATAAAATTGCCCATATT 58.918 33.333 0.00 0.00 0.00 1.28
2716 2880 7.309194 GGCGTCTTTCTATAAAATTGCCCATAT 60.309 37.037 0.00 0.00 32.70 1.78
2717 2881 6.016610 GGCGTCTTTCTATAAAATTGCCCATA 60.017 38.462 0.00 0.00 32.70 2.74
2718 2882 5.221244 GGCGTCTTTCTATAAAATTGCCCAT 60.221 40.000 0.00 0.00 32.70 4.00
2719 2883 4.097286 GGCGTCTTTCTATAAAATTGCCCA 59.903 41.667 0.00 0.00 32.70 5.36
2720 2884 4.499188 GGGCGTCTTTCTATAAAATTGCCC 60.499 45.833 10.79 10.79 42.76 5.36
2721 2885 4.607955 GGGCGTCTTTCTATAAAATTGCC 58.392 43.478 0.00 0.00 35.65 4.52
2722 2886 4.034742 TCGGGCGTCTTTCTATAAAATTGC 59.965 41.667 0.00 0.00 0.00 3.56
2723 2887 5.728351 TCGGGCGTCTTTCTATAAAATTG 57.272 39.130 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.