Multiple sequence alignment - TraesCS4A01G217800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G217800 chr4A 100.000 3071 0 0 1 3071 517883383 517886453 0.000000e+00 5672.0
1 TraesCS4A01G217800 chr4A 95.455 44 2 0 2866 2909 517885962 517885919 1.530000e-08 71.3
2 TraesCS4A01G217800 chr4A 97.561 41 1 0 2540 2580 517886288 517886248 1.530000e-08 71.3
3 TraesCS4A01G217800 chr4B 90.653 2525 122 51 131 2580 100575539 100578024 0.000000e+00 3251.0
4 TraesCS4A01G217800 chr4B 93.478 138 3 3 2604 2741 100578450 100578319 1.870000e-47 200.0
5 TraesCS4A01G217800 chr4B 91.549 142 5 3 2768 2909 100578116 100577982 4.040000e-44 189.0
6 TraesCS4A01G217800 chr4D 94.818 1814 52 19 782 2575 68052976 68054767 0.000000e+00 2791.0
7 TraesCS4A01G217800 chr4D 88.330 557 42 12 3 547 68052169 68052714 0.000000e+00 647.0
8 TraesCS4A01G217800 chr4D 93.333 315 12 3 2602 2909 68055041 68054729 1.000000e-124 457.0
9 TraesCS4A01G217800 chr4D 90.299 134 12 1 2938 3071 68055541 68055673 1.130000e-39 174.0
10 TraesCS4A01G217800 chr5B 79.109 651 77 40 986 1596 211146011 211146642 7.980000e-106 394.0
11 TraesCS4A01G217800 chr5B 91.045 134 12 0 1001 1134 514279627 514279494 6.760000e-42 182.0
12 TraesCS4A01G217800 chr5B 85.926 135 17 2 1212 1345 514279495 514279362 3.190000e-30 143.0
13 TraesCS4A01G217800 chr5D 79.084 655 74 46 985 1596 200501037 200501671 2.870000e-105 392.0
14 TraesCS4A01G217800 chr5D 91.045 134 12 0 1001 1134 425077485 425077352 6.760000e-42 182.0
15 TraesCS4A01G217800 chr5D 85.926 135 17 2 1212 1345 425077353 425077220 3.190000e-30 143.0
16 TraesCS4A01G217800 chr5A 80.263 380 45 19 994 1346 214166396 214166772 3.040000e-65 259.0
17 TraesCS4A01G217800 chr5A 93.525 139 8 1 1459 1596 214166884 214167022 4.010000e-49 206.0
18 TraesCS4A01G217800 chr5A 85.185 135 18 2 1212 1345 539093353 539093220 1.490000e-28 137.0
19 TraesCS4A01G217800 chr3A 90.972 144 12 1 988 1131 633922089 633922231 3.120000e-45 193.0
20 TraesCS4A01G217800 chr1B 89.103 156 15 2 1465 1618 487951128 487950973 3.120000e-45 193.0
21 TraesCS4A01G217800 chr3B 89.855 138 14 0 994 1131 653152044 653152181 8.750000e-41 178.0
22 TraesCS4A01G217800 chr1A 88.591 149 14 3 1466 1611 463461337 463461189 8.750000e-41 178.0
23 TraesCS4A01G217800 chr1D 92.000 125 10 0 1466 1590 364624919 364624795 3.150000e-40 176.0
24 TraesCS4A01G217800 chr3D 90.244 123 12 0 1465 1587 492131788 492131910 8.810000e-36 161.0
25 TraesCS4A01G217800 chr3D 82.759 145 24 1 1203 1346 352367952 352367808 8.940000e-26 128.0
26 TraesCS4A01G217800 chr7B 90.909 99 8 1 1693 1791 144973720 144973623 6.910000e-27 132.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G217800 chr4A 517883383 517886453 3070 False 5672.0 5672 100.000 1 3071 1 chr4A.!!$F1 3070
1 TraesCS4A01G217800 chr4B 100575539 100578024 2485 False 3251.0 3251 90.653 131 2580 1 chr4B.!!$F1 2449
2 TraesCS4A01G217800 chr4D 68052169 68055673 3504 False 1204.0 2791 91.149 3 3071 3 chr4D.!!$F1 3068
3 TraesCS4A01G217800 chr5B 211146011 211146642 631 False 394.0 394 79.109 986 1596 1 chr5B.!!$F1 610
4 TraesCS4A01G217800 chr5D 200501037 200501671 634 False 392.0 392 79.084 985 1596 1 chr5D.!!$F1 611
5 TraesCS4A01G217800 chr5A 214166396 214167022 626 False 232.5 259 86.894 994 1596 2 chr5A.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
828 890 0.047176 TCCCCTCTCTCTCTCCTCCT 59.953 60.0 0.0 0.0 0.0 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2620 2761 0.034477 CCGGAGTTGGTGGGCTAATT 60.034 55.0 0.0 0.0 0.0 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 9.448438 AAATTAAAGTTTATGCCCAAAGGAATC 57.552 29.630 0.00 0.00 31.63 2.52
121 122 0.171679 CATACACCACCACGCTCGTA 59.828 55.000 0.00 0.00 0.00 3.43
122 123 1.108776 ATACACCACCACGCTCGTAT 58.891 50.000 0.00 0.00 0.00 3.06
123 124 0.452987 TACACCACCACGCTCGTATC 59.547 55.000 0.00 0.00 0.00 2.24
124 125 1.214325 CACCACCACGCTCGTATCA 59.786 57.895 0.00 0.00 0.00 2.15
125 126 0.389296 CACCACCACGCTCGTATCAA 60.389 55.000 0.00 0.00 0.00 2.57
126 127 0.535335 ACCACCACGCTCGTATCAAT 59.465 50.000 0.00 0.00 0.00 2.57
127 128 1.752498 ACCACCACGCTCGTATCAATA 59.248 47.619 0.00 0.00 0.00 1.90
135 136 3.168963 CGCTCGTATCAATACCATACCG 58.831 50.000 0.00 0.00 0.00 4.02
162 163 3.638627 TCTCTCGTGCATCACCTCAATAT 59.361 43.478 0.00 0.00 0.00 1.28
163 164 4.827284 TCTCTCGTGCATCACCTCAATATA 59.173 41.667 0.00 0.00 0.00 0.86
219 222 3.969250 ATCGAAACGGCCGCCACAT 62.969 57.895 28.58 8.32 0.00 3.21
234 237 5.751680 CCGCCACATGTAAGAAATAAGATG 58.248 41.667 0.00 0.00 0.00 2.90
240 243 9.559732 CCACATGTAAGAAATAAGATGGTATCA 57.440 33.333 0.00 0.00 0.00 2.15
258 261 1.764854 ATCCTTATGCCCCGGTCGT 60.765 57.895 0.00 0.00 0.00 4.34
259 262 1.342672 ATCCTTATGCCCCGGTCGTT 61.343 55.000 0.00 0.00 0.00 3.85
261 264 1.219664 CTTATGCCCCGGTCGTTGA 59.780 57.895 0.00 0.00 0.00 3.18
263 266 1.828461 TTATGCCCCGGTCGTTGACA 61.828 55.000 0.00 0.00 33.68 3.58
266 269 2.261671 CCCCGGTCGTTGACAGAG 59.738 66.667 0.00 0.00 33.68 3.35
267 270 2.273179 CCCCGGTCGTTGACAGAGA 61.273 63.158 0.00 0.00 33.68 3.10
268 271 1.605058 CCCCGGTCGTTGACAGAGAT 61.605 60.000 0.00 0.00 33.68 2.75
269 272 0.458543 CCCGGTCGTTGACAGAGATG 60.459 60.000 0.00 0.00 33.68 2.90
271 274 0.526211 CGGTCGTTGACAGAGATGGA 59.474 55.000 0.00 0.00 33.68 3.41
277 280 3.493129 TCGTTGACAGAGATGGAAAAACG 59.507 43.478 0.00 0.00 40.20 3.60
281 284 5.611796 TGACAGAGATGGAAAAACGAATG 57.388 39.130 0.00 0.00 0.00 2.67
369 390 8.021396 AGCGTAGAATTTTCATGTAAAAGAACC 58.979 33.333 1.36 0.00 40.32 3.62
396 417 4.993705 TTTGATGTTGAACTACCCTCCT 57.006 40.909 0.00 0.00 0.00 3.69
494 521 2.897972 GCCGGGTACACCTACCAG 59.102 66.667 2.18 0.00 44.18 4.00
524 552 3.520696 CCTCCTCCCCCAAAAGAAAAAT 58.479 45.455 0.00 0.00 0.00 1.82
583 617 1.075536 GCAGAAAAGAAAGGGAGGGGA 59.924 52.381 0.00 0.00 0.00 4.81
586 620 3.074538 CAGAAAAGAAAGGGAGGGGAGAA 59.925 47.826 0.00 0.00 0.00 2.87
588 622 1.675007 AAGAAAGGGAGGGGAGAAGG 58.325 55.000 0.00 0.00 0.00 3.46
590 624 1.154434 AGAAAGGGAGGGGAGAAGGAA 59.846 52.381 0.00 0.00 0.00 3.36
592 626 0.253394 AAGGGAGGGGAGAAGGAAGG 60.253 60.000 0.00 0.00 0.00 3.46
675 709 2.050077 GGCTTTGCAACCACTCGC 60.050 61.111 0.00 0.00 0.00 5.03
822 884 1.641552 CCCGTCTCCCCTCTCTCTCT 61.642 65.000 0.00 0.00 0.00 3.10
823 885 0.179029 CCGTCTCCCCTCTCTCTCTC 60.179 65.000 0.00 0.00 0.00 3.20
825 887 1.222567 GTCTCCCCTCTCTCTCTCCT 58.777 60.000 0.00 0.00 0.00 3.69
826 888 1.143073 GTCTCCCCTCTCTCTCTCCTC 59.857 61.905 0.00 0.00 0.00 3.71
827 889 0.478507 CTCCCCTCTCTCTCTCCTCC 59.521 65.000 0.00 0.00 0.00 4.30
828 890 0.047176 TCCCCTCTCTCTCTCCTCCT 59.953 60.000 0.00 0.00 0.00 3.69
829 891 0.478507 CCCCTCTCTCTCTCCTCCTC 59.521 65.000 0.00 0.00 0.00 3.71
830 892 0.108585 CCCTCTCTCTCTCCTCCTCG 59.891 65.000 0.00 0.00 0.00 4.63
1172 1254 3.475774 CAAGACGCGTGTACGGCC 61.476 66.667 20.70 0.00 44.12 6.13
1174 1256 3.291101 AAGACGCGTGTACGGCCAT 62.291 57.895 20.70 0.00 44.12 4.40
1188 1282 1.476652 CGGCCATGGGTGAATGATGTA 60.477 52.381 15.13 0.00 0.00 2.29
1375 1473 7.215789 TCTTATCCTTCTTCTTCTGATGATGC 58.784 38.462 0.00 0.00 0.00 3.91
1398 1496 5.221028 GCATCAGTGGAGATAGATAGATCGG 60.221 48.000 0.00 0.00 0.00 4.18
1656 1777 2.950172 GCACCAACACCAGTACGCG 61.950 63.158 3.53 3.53 0.00 6.01
1836 1957 1.558756 CTCAACCTCTCCATCAGCCTT 59.441 52.381 0.00 0.00 0.00 4.35
1839 1960 1.203441 ACCTCTCCATCAGCCTTGCA 61.203 55.000 0.00 0.00 0.00 4.08
2046 2173 2.848376 GCACATGTTCAGATTCATCGCG 60.848 50.000 0.00 0.00 0.00 5.87
2188 2315 9.956720 CATGTTCATGAGGAAATTAAATCTACC 57.043 33.333 6.94 0.00 37.23 3.18
2207 2341 7.758820 TCTACCCCCTTTCTATTAATTCACA 57.241 36.000 0.00 0.00 0.00 3.58
2208 2342 7.802117 TCTACCCCCTTTCTATTAATTCACAG 58.198 38.462 0.00 0.00 0.00 3.66
2209 2343 5.201243 ACCCCCTTTCTATTAATTCACAGC 58.799 41.667 0.00 0.00 0.00 4.40
2210 2344 5.044105 ACCCCCTTTCTATTAATTCACAGCT 60.044 40.000 0.00 0.00 0.00 4.24
2211 2345 6.159751 ACCCCCTTTCTATTAATTCACAGCTA 59.840 38.462 0.00 0.00 0.00 3.32
2212 2346 6.486993 CCCCCTTTCTATTAATTCACAGCTAC 59.513 42.308 0.00 0.00 0.00 3.58
2213 2347 7.283329 CCCCTTTCTATTAATTCACAGCTACT 58.717 38.462 0.00 0.00 0.00 2.57
2323 2457 7.388224 CCTACCTTCTTTCCTTCTTGTCTTTAC 59.612 40.741 0.00 0.00 0.00 2.01
2329 2463 8.758633 TCTTTCCTTCTTGTCTTTACTAATCG 57.241 34.615 0.00 0.00 0.00 3.34
2351 2485 3.817647 GTGCCATAGGAAGTTCATCATCC 59.182 47.826 5.01 0.00 34.47 3.51
2398 2532 3.174779 CCTAATCTAGGGGAGTTAGGCC 58.825 54.545 0.00 0.00 42.42 5.19
2426 2567 1.193323 AGGGAGTGAGTGATGCAGAG 58.807 55.000 0.00 0.00 0.00 3.35
2428 2569 2.103373 GGGAGTGAGTGATGCAGAGTA 58.897 52.381 0.00 0.00 0.00 2.59
2489 2630 5.183969 GTGGTTATGGGAAGTTAGGTTCTC 58.816 45.833 0.00 0.00 0.00 2.87
2560 2701 6.623486 TGAATGGTTGAGTTTTCTATGCATG 58.377 36.000 10.16 0.00 0.00 4.06
2580 2721 5.462068 GCATGAAAAAGGGTTTGTCTTGTAC 59.538 40.000 0.00 0.00 0.00 2.90
2582 2723 3.703286 AAAAGGGTTTGTCTTGTACGC 57.297 42.857 0.00 0.00 0.00 4.42
2583 2724 2.632987 AAGGGTTTGTCTTGTACGCT 57.367 45.000 0.00 0.00 36.74 5.07
2584 2725 2.632987 AGGGTTTGTCTTGTACGCTT 57.367 45.000 0.00 0.00 31.95 4.68
2585 2726 2.927028 AGGGTTTGTCTTGTACGCTTT 58.073 42.857 0.00 0.00 31.95 3.51
2587 2728 2.356695 GGGTTTGTCTTGTACGCTTTGT 59.643 45.455 0.00 0.00 0.00 2.83
2589 2730 3.064271 GGTTTGTCTTGTACGCTTTGTGA 59.936 43.478 0.00 0.00 0.00 3.58
2591 2732 3.936902 TGTCTTGTACGCTTTGTGAAC 57.063 42.857 0.00 0.00 0.00 3.18
2592 2733 2.283086 TGTCTTGTACGCTTTGTGAACG 59.717 45.455 0.00 0.00 0.00 3.95
2594 2735 1.862201 CTTGTACGCTTTGTGAACGGA 59.138 47.619 0.00 0.00 0.00 4.69
2598 2739 1.157870 ACGCTTTGTGAACGGAGTGG 61.158 55.000 0.00 0.00 45.00 4.00
2599 2740 1.282875 GCTTTGTGAACGGAGTGGC 59.717 57.895 0.00 0.00 45.00 5.01
2600 2741 1.949257 CTTTGTGAACGGAGTGGCC 59.051 57.895 0.00 0.00 45.00 5.36
2619 2760 5.690865 TGGCCGATCCAAGATTAAATTACT 58.309 37.500 0.00 0.00 43.21 2.24
2620 2761 6.833041 TGGCCGATCCAAGATTAAATTACTA 58.167 36.000 0.00 0.00 43.21 1.82
2623 2764 8.793592 GGCCGATCCAAGATTAAATTACTAATT 58.206 33.333 0.00 0.00 34.01 1.40
2632 2773 9.930158 AAGATTAAATTACTAATTAGCCCACCA 57.070 29.630 12.54 0.00 0.00 4.17
2633 2774 9.930158 AGATTAAATTACTAATTAGCCCACCAA 57.070 29.630 12.54 1.64 0.00 3.67
2634 2775 9.961265 GATTAAATTACTAATTAGCCCACCAAC 57.039 33.333 12.54 0.00 0.00 3.77
2635 2776 9.709387 ATTAAATTACTAATTAGCCCACCAACT 57.291 29.630 12.54 0.00 0.00 3.16
2636 2777 7.640597 AAATTACTAATTAGCCCACCAACTC 57.359 36.000 12.54 0.00 0.00 3.01
2637 2778 3.646736 ACTAATTAGCCCACCAACTCC 57.353 47.619 12.54 0.00 0.00 3.85
2638 2779 2.093128 ACTAATTAGCCCACCAACTCCG 60.093 50.000 12.54 0.00 0.00 4.63
2639 2780 0.034477 AATTAGCCCACCAACTCCGG 60.034 55.000 0.00 0.00 0.00 5.14
2640 2781 2.552231 ATTAGCCCACCAACTCCGGC 62.552 60.000 0.00 0.00 41.96 6.13
2642 2783 4.740822 GCCCACCAACTCCGGCAT 62.741 66.667 0.00 0.00 41.25 4.40
2643 2784 2.438434 CCCACCAACTCCGGCATC 60.438 66.667 0.00 0.00 0.00 3.91
2644 2785 2.438434 CCACCAACTCCGGCATCC 60.438 66.667 0.00 0.00 0.00 3.51
2645 2786 2.350895 CACCAACTCCGGCATCCA 59.649 61.111 0.00 0.00 0.00 3.41
2646 2787 2.040544 CACCAACTCCGGCATCCAC 61.041 63.158 0.00 0.00 0.00 4.02
2647 2788 2.350895 CCAACTCCGGCATCCACA 59.649 61.111 0.00 0.00 0.00 4.17
2648 2789 1.303236 CCAACTCCGGCATCCACAA 60.303 57.895 0.00 0.00 0.00 3.33
2649 2790 1.586154 CCAACTCCGGCATCCACAAC 61.586 60.000 0.00 0.00 0.00 3.32
2650 2791 1.303317 AACTCCGGCATCCACAACC 60.303 57.895 0.00 0.00 0.00 3.77
2651 2792 2.438434 CTCCGGCATCCACAACCC 60.438 66.667 0.00 0.00 0.00 4.11
2652 2793 3.995506 CTCCGGCATCCACAACCCC 62.996 68.421 0.00 0.00 0.00 4.95
2653 2794 4.358841 CCGGCATCCACAACCCCA 62.359 66.667 0.00 0.00 0.00 4.96
2654 2795 2.282816 CGGCATCCACAACCCCAA 60.283 61.111 0.00 0.00 0.00 4.12
2655 2796 2.635443 CGGCATCCACAACCCCAAC 61.635 63.158 0.00 0.00 0.00 3.77
2656 2797 2.282783 GGCATCCACAACCCCAACC 61.283 63.158 0.00 0.00 0.00 3.77
2657 2798 2.282783 GCATCCACAACCCCAACCC 61.283 63.158 0.00 0.00 0.00 4.11
2658 2799 1.609210 CATCCACAACCCCAACCCC 60.609 63.158 0.00 0.00 0.00 4.95
2659 2800 2.094494 ATCCACAACCCCAACCCCA 61.094 57.895 0.00 0.00 0.00 4.96
2660 2801 1.669927 ATCCACAACCCCAACCCCAA 61.670 55.000 0.00 0.00 0.00 4.12
2661 2802 1.836604 CCACAACCCCAACCCCAAG 60.837 63.158 0.00 0.00 0.00 3.61
2662 2803 1.231641 CACAACCCCAACCCCAAGA 59.768 57.895 0.00 0.00 0.00 3.02
2663 2804 0.397816 CACAACCCCAACCCCAAGAA 60.398 55.000 0.00 0.00 0.00 2.52
2664 2805 0.105709 ACAACCCCAACCCCAAGAAG 60.106 55.000 0.00 0.00 0.00 2.85
2665 2806 0.831711 CAACCCCAACCCCAAGAAGG 60.832 60.000 0.00 0.00 37.03 3.46
2666 2807 2.283894 CCCCAACCCCAAGAAGGC 60.284 66.667 0.00 0.00 35.39 4.35
2667 2808 2.283894 CCCAACCCCAAGAAGGCC 60.284 66.667 0.00 0.00 35.39 5.19
2668 2809 2.525592 CCAACCCCAAGAAGGCCA 59.474 61.111 5.01 0.00 35.39 5.36
2669 2810 1.607467 CCAACCCCAAGAAGGCCAG 60.607 63.158 5.01 0.00 35.39 4.85
2670 2811 1.460255 CAACCCCAAGAAGGCCAGA 59.540 57.895 5.01 0.00 35.39 3.86
2671 2812 0.895559 CAACCCCAAGAAGGCCAGAC 60.896 60.000 5.01 0.00 35.39 3.51
2672 2813 1.360393 AACCCCAAGAAGGCCAGACA 61.360 55.000 5.01 0.00 35.39 3.41
2673 2814 1.303643 CCCCAAGAAGGCCAGACAC 60.304 63.158 5.01 0.00 35.39 3.67
2674 2815 1.455849 CCCAAGAAGGCCAGACACA 59.544 57.895 5.01 0.00 35.39 3.72
2675 2816 0.607489 CCCAAGAAGGCCAGACACAG 60.607 60.000 5.01 0.00 35.39 3.66
2676 2817 1.239968 CCAAGAAGGCCAGACACAGC 61.240 60.000 5.01 0.00 0.00 4.40
2677 2818 0.535780 CAAGAAGGCCAGACACAGCA 60.536 55.000 5.01 0.00 0.00 4.41
2678 2819 0.536006 AAGAAGGCCAGACACAGCAC 60.536 55.000 5.01 0.00 0.00 4.40
2679 2820 1.227943 GAAGGCCAGACACAGCACA 60.228 57.895 5.01 0.00 0.00 4.57
2680 2821 1.510480 GAAGGCCAGACACAGCACAC 61.510 60.000 5.01 0.00 0.00 3.82
2681 2822 3.349006 GGCCAGACACAGCACACG 61.349 66.667 0.00 0.00 0.00 4.49
2682 2823 4.017877 GCCAGACACAGCACACGC 62.018 66.667 0.00 0.00 38.99 5.34
2683 2824 3.349006 CCAGACACAGCACACGCC 61.349 66.667 0.00 0.00 39.83 5.68
2684 2825 2.588596 CAGACACAGCACACGCCA 60.589 61.111 0.00 0.00 39.83 5.69
2685 2826 2.179547 CAGACACAGCACACGCCAA 61.180 57.895 0.00 0.00 39.83 4.52
2686 2827 1.889105 AGACACAGCACACGCCAAG 60.889 57.895 0.00 0.00 39.83 3.61
2687 2828 3.527360 GACACAGCACACGCCAAGC 62.527 63.158 0.00 0.00 39.83 4.01
2688 2829 3.282157 CACAGCACACGCCAAGCT 61.282 61.111 0.00 0.00 39.83 3.74
2689 2830 2.974698 ACAGCACACGCCAAGCTC 60.975 61.111 0.00 0.00 39.83 4.09
2690 2831 2.667536 CAGCACACGCCAAGCTCT 60.668 61.111 0.00 0.00 39.83 4.09
2691 2832 2.358003 AGCACACGCCAAGCTCTC 60.358 61.111 0.00 0.00 39.83 3.20
2692 2833 2.358003 GCACACGCCAAGCTCTCT 60.358 61.111 0.00 0.00 0.00 3.10
2693 2834 2.675056 GCACACGCCAAGCTCTCTG 61.675 63.158 0.00 0.00 0.00 3.35
2694 2835 1.005748 CACACGCCAAGCTCTCTGA 60.006 57.895 0.00 0.00 0.00 3.27
2695 2836 1.005630 ACACGCCAAGCTCTCTGAC 60.006 57.895 0.00 0.00 0.00 3.51
2696 2837 1.739562 CACGCCAAGCTCTCTGACC 60.740 63.158 0.00 0.00 0.00 4.02
2697 2838 2.210013 ACGCCAAGCTCTCTGACCA 61.210 57.895 0.00 0.00 0.00 4.02
2698 2839 1.220206 CGCCAAGCTCTCTGACCAT 59.780 57.895 0.00 0.00 0.00 3.55
2699 2840 0.392193 CGCCAAGCTCTCTGACCATT 60.392 55.000 0.00 0.00 0.00 3.16
2700 2841 1.134699 CGCCAAGCTCTCTGACCATTA 60.135 52.381 0.00 0.00 0.00 1.90
2701 2842 2.677902 CGCCAAGCTCTCTGACCATTAA 60.678 50.000 0.00 0.00 0.00 1.40
2702 2843 2.941720 GCCAAGCTCTCTGACCATTAAG 59.058 50.000 0.00 0.00 0.00 1.85
2703 2844 3.620966 GCCAAGCTCTCTGACCATTAAGT 60.621 47.826 0.00 0.00 0.00 2.24
2704 2845 4.187694 CCAAGCTCTCTGACCATTAAGTC 58.812 47.826 0.00 0.00 37.28 3.01
2705 2846 4.323028 CCAAGCTCTCTGACCATTAAGTCA 60.323 45.833 0.00 0.00 44.38 3.41
2706 2847 5.426504 CAAGCTCTCTGACCATTAAGTCAT 58.573 41.667 0.00 0.00 45.39 3.06
2707 2848 5.690464 AGCTCTCTGACCATTAAGTCATT 57.310 39.130 0.00 0.00 45.39 2.57
2708 2849 6.798427 AGCTCTCTGACCATTAAGTCATTA 57.202 37.500 0.00 0.00 45.39 1.90
2709 2850 7.187824 AGCTCTCTGACCATTAAGTCATTAA 57.812 36.000 0.00 0.00 45.39 1.40
2710 2851 7.044798 AGCTCTCTGACCATTAAGTCATTAAC 58.955 38.462 0.00 0.00 45.39 2.01
2711 2852 7.044798 GCTCTCTGACCATTAAGTCATTAACT 58.955 38.462 0.00 0.00 45.39 2.24
2712 2853 8.198109 GCTCTCTGACCATTAAGTCATTAACTA 58.802 37.037 0.00 0.00 45.39 2.24
2713 2854 9.743057 CTCTCTGACCATTAAGTCATTAACTAG 57.257 37.037 0.00 0.00 45.39 2.57
2714 2855 8.198109 TCTCTGACCATTAAGTCATTAACTAGC 58.802 37.037 0.00 0.00 45.39 3.42
2715 2856 7.272978 TCTGACCATTAAGTCATTAACTAGCC 58.727 38.462 0.00 0.00 45.39 3.93
2716 2857 6.953101 TGACCATTAAGTCATTAACTAGCCA 58.047 36.000 0.00 0.00 41.78 4.75
2717 2858 7.398829 TGACCATTAAGTCATTAACTAGCCAA 58.601 34.615 0.00 0.00 41.78 4.52
2718 2859 7.885922 TGACCATTAAGTCATTAACTAGCCAAA 59.114 33.333 0.00 0.00 41.78 3.28
2719 2860 8.644374 ACCATTAAGTCATTAACTAGCCAAAA 57.356 30.769 0.00 0.00 37.17 2.44
2720 2861 9.084533 ACCATTAAGTCATTAACTAGCCAAAAA 57.915 29.630 0.00 0.00 37.17 1.94
2721 2862 9.573133 CCATTAAGTCATTAACTAGCCAAAAAG 57.427 33.333 0.00 0.00 37.17 2.27
2722 2863 9.076596 CATTAAGTCATTAACTAGCCAAAAAGC 57.923 33.333 0.00 0.00 37.17 3.51
2723 2864 9.025041 ATTAAGTCATTAACTAGCCAAAAAGCT 57.975 29.630 0.00 0.00 39.00 3.74
2724 2865 6.502136 AGTCATTAACTAGCCAAAAAGCTC 57.498 37.500 0.00 0.00 43.67 4.09
2725 2866 5.416013 AGTCATTAACTAGCCAAAAAGCTCC 59.584 40.000 0.00 0.00 43.67 4.70
2726 2867 5.416013 GTCATTAACTAGCCAAAAAGCTCCT 59.584 40.000 0.00 0.00 43.67 3.69
2727 2868 5.648092 TCATTAACTAGCCAAAAAGCTCCTC 59.352 40.000 0.00 0.00 43.67 3.71
2728 2869 3.508845 AACTAGCCAAAAAGCTCCTCA 57.491 42.857 0.00 0.00 43.67 3.86
2729 2870 3.064900 ACTAGCCAAAAAGCTCCTCAG 57.935 47.619 0.00 0.00 43.67 3.35
2730 2871 2.373502 ACTAGCCAAAAAGCTCCTCAGT 59.626 45.455 0.00 0.00 43.67 3.41
2731 2872 1.902938 AGCCAAAAAGCTCCTCAGTC 58.097 50.000 0.00 0.00 39.48 3.51
2732 2873 0.884514 GCCAAAAAGCTCCTCAGTCC 59.115 55.000 0.00 0.00 0.00 3.85
2733 2874 1.819305 GCCAAAAAGCTCCTCAGTCCA 60.819 52.381 0.00 0.00 0.00 4.02
2734 2875 2.800250 CCAAAAAGCTCCTCAGTCCAT 58.200 47.619 0.00 0.00 0.00 3.41
2735 2876 2.490903 CCAAAAAGCTCCTCAGTCCATG 59.509 50.000 0.00 0.00 0.00 3.66
2736 2877 1.831580 AAAAGCTCCTCAGTCCATGC 58.168 50.000 0.00 0.00 0.00 4.06
2737 2878 0.034670 AAAGCTCCTCAGTCCATGCC 60.035 55.000 0.00 0.00 0.00 4.40
2738 2879 1.919600 AAGCTCCTCAGTCCATGCCC 61.920 60.000 0.00 0.00 0.00 5.36
2739 2880 2.914289 CTCCTCAGTCCATGCCCC 59.086 66.667 0.00 0.00 0.00 5.80
2740 2881 1.692042 CTCCTCAGTCCATGCCCCT 60.692 63.158 0.00 0.00 0.00 4.79
2741 2882 1.690633 TCCTCAGTCCATGCCCCTC 60.691 63.158 0.00 0.00 0.00 4.30
2742 2883 2.750657 CCTCAGTCCATGCCCCTCC 61.751 68.421 0.00 0.00 0.00 4.30
2743 2884 2.692368 TCAGTCCATGCCCCTCCC 60.692 66.667 0.00 0.00 0.00 4.30
2744 2885 3.813724 CAGTCCATGCCCCTCCCC 61.814 72.222 0.00 0.00 0.00 4.81
2745 2886 4.044390 AGTCCATGCCCCTCCCCT 62.044 66.667 0.00 0.00 0.00 4.79
2746 2887 3.493303 GTCCATGCCCCTCCCCTC 61.493 72.222 0.00 0.00 0.00 4.30
2747 2888 4.843331 TCCATGCCCCTCCCCTCC 62.843 72.222 0.00 0.00 0.00 4.30
2748 2889 4.851252 CCATGCCCCTCCCCTCCT 62.851 72.222 0.00 0.00 0.00 3.69
2749 2890 3.174265 CATGCCCCTCCCCTCCTC 61.174 72.222 0.00 0.00 0.00 3.71
2750 2891 4.523282 ATGCCCCTCCCCTCCTCC 62.523 72.222 0.00 0.00 0.00 4.30
2752 2893 4.890306 GCCCCTCCCCTCCTCCTC 62.890 77.778 0.00 0.00 0.00 3.71
2753 2894 4.179599 CCCCTCCCCTCCTCCTCC 62.180 77.778 0.00 0.00 0.00 4.30
2754 2895 3.368501 CCCTCCCCTCCTCCTCCA 61.369 72.222 0.00 0.00 0.00 3.86
2755 2896 2.731461 CCCTCCCCTCCTCCTCCAT 61.731 68.421 0.00 0.00 0.00 3.41
2756 2897 1.461075 CCTCCCCTCCTCCTCCATG 60.461 68.421 0.00 0.00 0.00 3.66
2757 2898 1.461075 CTCCCCTCCTCCTCCATGG 60.461 68.421 4.97 4.97 37.10 3.66
2758 2899 3.174265 CCCCTCCTCCTCCATGGC 61.174 72.222 6.96 0.00 35.26 4.40
2759 2900 2.367377 CCCTCCTCCTCCATGGCA 60.367 66.667 6.96 0.00 35.26 4.92
2760 2901 2.750657 CCCTCCTCCTCCATGGCAC 61.751 68.421 6.96 0.00 35.26 5.01
2761 2902 1.692042 CCTCCTCCTCCATGGCACT 60.692 63.158 6.96 0.00 35.26 4.40
2762 2903 1.277580 CCTCCTCCTCCATGGCACTT 61.278 60.000 6.96 0.00 35.26 3.16
2763 2904 0.622665 CTCCTCCTCCATGGCACTTT 59.377 55.000 6.96 0.00 35.26 2.66
2764 2905 1.839994 CTCCTCCTCCATGGCACTTTA 59.160 52.381 6.96 0.00 35.26 1.85
2765 2906 2.441001 CTCCTCCTCCATGGCACTTTAT 59.559 50.000 6.96 0.00 35.26 1.40
2766 2907 2.439507 TCCTCCTCCATGGCACTTTATC 59.560 50.000 6.96 0.00 35.26 1.75
2767 2908 2.487986 CCTCCTCCATGGCACTTTATCC 60.488 54.545 6.96 0.00 35.26 2.59
2768 2909 1.494721 TCCTCCATGGCACTTTATCCC 59.505 52.381 6.96 0.00 35.26 3.85
2769 2910 1.479389 CCTCCATGGCACTTTATCCCC 60.479 57.143 6.96 0.00 0.00 4.81
2770 2911 1.496429 CTCCATGGCACTTTATCCCCT 59.504 52.381 6.96 0.00 0.00 4.79
2771 2912 1.929494 TCCATGGCACTTTATCCCCTT 59.071 47.619 6.96 0.00 0.00 3.95
2772 2913 2.091885 TCCATGGCACTTTATCCCCTTC 60.092 50.000 6.96 0.00 0.00 3.46
2773 2914 2.358090 CCATGGCACTTTATCCCCTTCA 60.358 50.000 0.00 0.00 0.00 3.02
2774 2915 3.569491 CATGGCACTTTATCCCCTTCAT 58.431 45.455 0.00 0.00 0.00 2.57
2775 2916 3.756082 TGGCACTTTATCCCCTTCATT 57.244 42.857 0.00 0.00 0.00 2.57
2776 2917 4.871871 TGGCACTTTATCCCCTTCATTA 57.128 40.909 0.00 0.00 0.00 1.90
2777 2918 5.199982 TGGCACTTTATCCCCTTCATTAA 57.800 39.130 0.00 0.00 0.00 1.40
2778 2919 4.953579 TGGCACTTTATCCCCTTCATTAAC 59.046 41.667 0.00 0.00 0.00 2.01
2779 2920 4.953579 GGCACTTTATCCCCTTCATTAACA 59.046 41.667 0.00 0.00 0.00 2.41
2780 2921 5.163550 GGCACTTTATCCCCTTCATTAACAC 60.164 44.000 0.00 0.00 0.00 3.32
2781 2922 5.163550 GCACTTTATCCCCTTCATTAACACC 60.164 44.000 0.00 0.00 0.00 4.16
2782 2923 6.187682 CACTTTATCCCCTTCATTAACACCT 58.812 40.000 0.00 0.00 0.00 4.00
2783 2924 6.318900 CACTTTATCCCCTTCATTAACACCTC 59.681 42.308 0.00 0.00 0.00 3.85
2784 2925 6.217693 ACTTTATCCCCTTCATTAACACCTCT 59.782 38.462 0.00 0.00 0.00 3.69
2791 2932 5.368989 CCTTCATTAACACCTCTCCCATAC 58.631 45.833 0.00 0.00 0.00 2.39
2792 2933 5.367945 TTCATTAACACCTCTCCCATACC 57.632 43.478 0.00 0.00 0.00 2.73
2797 2938 4.348020 AACACCTCTCCCATACCTTCTA 57.652 45.455 0.00 0.00 0.00 2.10
2798 2939 3.644335 ACACCTCTCCCATACCTTCTAC 58.356 50.000 0.00 0.00 0.00 2.59
2799 2940 2.966516 CACCTCTCCCATACCTTCTACC 59.033 54.545 0.00 0.00 0.00 3.18
2802 2943 4.140971 ACCTCTCCCATACCTTCTACCTAC 60.141 50.000 0.00 0.00 0.00 3.18
2803 2944 4.409187 CTCTCCCATACCTTCTACCTACC 58.591 52.174 0.00 0.00 0.00 3.18
2805 2946 5.237935 TCTCCCATACCTTCTACCTACCTA 58.762 45.833 0.00 0.00 0.00 3.08
2806 2947 5.074239 TCTCCCATACCTTCTACCTACCTAC 59.926 48.000 0.00 0.00 0.00 3.18
2807 2948 4.106987 TCCCATACCTTCTACCTACCTACC 59.893 50.000 0.00 0.00 0.00 3.18
2810 2951 6.183361 CCCATACCTTCTACCTACCTACCTAA 60.183 46.154 0.00 0.00 0.00 2.69
2811 2952 6.718912 CCATACCTTCTACCTACCTACCTAAC 59.281 46.154 0.00 0.00 0.00 2.34
2812 2953 5.136068 ACCTTCTACCTACCTACCTAACC 57.864 47.826 0.00 0.00 0.00 2.85
2817 2958 6.407320 TCTACCTACCTACCTAACCAGAAA 57.593 41.667 0.00 0.00 0.00 2.52
2818 2959 6.804083 TCTACCTACCTACCTAACCAGAAAA 58.196 40.000 0.00 0.00 0.00 2.29
2825 2966 5.070685 CCTACCTAACCAGAAAATATGGGC 58.929 45.833 0.00 0.00 42.48 5.36
2826 2967 4.601406 ACCTAACCAGAAAATATGGGCA 57.399 40.909 0.00 0.00 42.48 5.36
2827 2968 5.142806 ACCTAACCAGAAAATATGGGCAT 57.857 39.130 0.00 0.00 42.48 4.40
2828 2969 5.528337 ACCTAACCAGAAAATATGGGCATT 58.472 37.500 0.00 0.00 42.48 3.56
2829 2970 5.598417 ACCTAACCAGAAAATATGGGCATTC 59.402 40.000 0.00 0.00 42.48 2.67
2830 2971 5.011023 CCTAACCAGAAAATATGGGCATTCC 59.989 44.000 0.00 0.00 42.48 3.01
2838 2979 4.021559 TGGGCATTCCACATGCTG 57.978 55.556 6.76 0.00 44.02 4.41
2839 2980 2.352821 TGGGCATTCCACATGCTGC 61.353 57.895 6.76 0.00 44.02 5.25
2840 2981 2.497770 GGCATTCCACATGCTGCC 59.502 61.111 6.76 7.72 46.54 4.85
2841 2982 2.497770 GCATTCCACATGCTGCCC 59.502 61.111 0.00 0.00 41.52 5.36
2842 2983 2.352821 GCATTCCACATGCTGCCCA 61.353 57.895 0.00 0.00 41.52 5.36
2843 2984 1.514087 CATTCCACATGCTGCCCAC 59.486 57.895 0.00 0.00 0.00 4.61
2844 2985 0.968901 CATTCCACATGCTGCCCACT 60.969 55.000 0.00 0.00 0.00 4.00
2845 2986 0.682209 ATTCCACATGCTGCCCACTC 60.682 55.000 0.00 0.00 0.00 3.51
2846 2987 2.753043 CCACATGCTGCCCACTCC 60.753 66.667 0.00 0.00 0.00 3.85
2847 2988 2.753043 CACATGCTGCCCACTCCC 60.753 66.667 0.00 0.00 0.00 4.30
2849 2990 2.753043 CATGCTGCCCACTCCCAC 60.753 66.667 0.00 0.00 0.00 4.61
2851 2992 2.976490 ATGCTGCCCACTCCCACTC 61.976 63.158 0.00 0.00 0.00 3.51
2856 2997 4.354943 CCCACTCCCACTCCCCCT 62.355 72.222 0.00 0.00 0.00 4.79
2857 2998 2.689034 CCACTCCCACTCCCCCTC 60.689 72.222 0.00 0.00 0.00 4.30
2858 2999 2.452114 CACTCCCACTCCCCCTCT 59.548 66.667 0.00 0.00 0.00 3.69
2859 3000 1.687493 CACTCCCACTCCCCCTCTC 60.687 68.421 0.00 0.00 0.00 3.20
2860 3001 2.041405 CTCCCACTCCCCCTCTCC 60.041 72.222 0.00 0.00 0.00 3.71
2861 3002 2.540910 TCCCACTCCCCCTCTCCT 60.541 66.667 0.00 0.00 0.00 3.69
2862 3003 2.041405 CCCACTCCCCCTCTCCTC 60.041 72.222 0.00 0.00 0.00 3.71
2863 3004 2.641746 CCCACTCCCCCTCTCCTCT 61.642 68.421 0.00 0.00 0.00 3.69
2864 3005 1.075600 CCACTCCCCCTCTCCTCTC 60.076 68.421 0.00 0.00 0.00 3.20
2865 3006 1.589399 CCACTCCCCCTCTCCTCTCT 61.589 65.000 0.00 0.00 0.00 3.10
2866 3007 1.227249 CACTCCCCCTCTCCTCTCTA 58.773 60.000 0.00 0.00 0.00 2.43
2867 3008 1.133606 CACTCCCCCTCTCCTCTCTAC 60.134 61.905 0.00 0.00 0.00 2.59
2868 3009 1.275357 ACTCCCCCTCTCCTCTCTACT 60.275 57.143 0.00 0.00 0.00 2.57
2869 3010 2.020842 ACTCCCCCTCTCCTCTCTACTA 60.021 54.545 0.00 0.00 0.00 1.82
2871 3012 2.253214 TCCCCCTCTCCTCTCTACTAGA 59.747 54.545 0.00 0.00 0.00 2.43
2872 3013 2.374170 CCCCCTCTCCTCTCTACTAGAC 59.626 59.091 0.00 0.00 0.00 2.59
2873 3014 3.050089 CCCCTCTCCTCTCTACTAGACA 58.950 54.545 0.00 0.00 0.00 3.41
2874 3015 3.460340 CCCCTCTCCTCTCTACTAGACAA 59.540 52.174 0.00 0.00 0.00 3.18
2875 3016 4.079672 CCCCTCTCCTCTCTACTAGACAAA 60.080 50.000 0.00 0.00 0.00 2.83
2876 3017 4.885325 CCCTCTCCTCTCTACTAGACAAAC 59.115 50.000 0.00 0.00 0.00 2.93
2892 3448 6.029346 AGACAAACCCTTTTTCATGCATAG 57.971 37.500 0.00 0.00 0.00 2.23
2893 3449 5.774690 AGACAAACCCTTTTTCATGCATAGA 59.225 36.000 0.00 0.00 0.00 1.98
2894 3450 6.267471 AGACAAACCCTTTTTCATGCATAGAA 59.733 34.615 0.00 3.08 0.00 2.10
2895 3451 6.825610 ACAAACCCTTTTTCATGCATAGAAA 58.174 32.000 15.74 15.74 33.48 2.52
2896 3452 7.278875 ACAAACCCTTTTTCATGCATAGAAAA 58.721 30.769 22.25 22.25 41.66 2.29
2897 3453 7.226523 ACAAACCCTTTTTCATGCATAGAAAAC 59.773 33.333 24.24 0.00 42.68 2.43
2898 3454 6.670695 ACCCTTTTTCATGCATAGAAAACT 57.329 33.333 24.24 12.40 42.68 2.66
2899 3455 6.691508 ACCCTTTTTCATGCATAGAAAACTC 58.308 36.000 24.24 0.00 42.68 3.01
2900 3456 6.267471 ACCCTTTTTCATGCATAGAAAACTCA 59.733 34.615 24.24 15.37 42.68 3.41
2901 3457 7.153985 CCCTTTTTCATGCATAGAAAACTCAA 58.846 34.615 24.24 15.15 42.68 3.02
2902 3458 7.116805 CCCTTTTTCATGCATAGAAAACTCAAC 59.883 37.037 24.24 0.00 42.68 3.18
2903 3459 7.116805 CCTTTTTCATGCATAGAAAACTCAACC 59.883 37.037 24.24 0.00 42.68 3.77
2904 3460 6.647334 TTTCATGCATAGAAAACTCAACCA 57.353 33.333 16.77 0.00 32.47 3.67
2905 3461 6.839124 TTCATGCATAGAAAACTCAACCAT 57.161 33.333 0.00 0.00 0.00 3.55
2907 3463 4.439305 TGCATAGAAAACTCAACCATGC 57.561 40.909 0.00 0.00 38.19 4.06
2908 3464 3.825585 TGCATAGAAAACTCAACCATGCA 59.174 39.130 2.43 2.43 43.48 3.96
2910 3466 5.651576 TGCATAGAAAACTCAACCATGCATA 59.348 36.000 0.00 0.00 41.53 3.14
2911 3467 6.183360 TGCATAGAAAACTCAACCATGCATAG 60.183 38.462 0.00 0.00 41.53 2.23
2912 3468 6.038603 GCATAGAAAACTCAACCATGCATAGA 59.961 38.462 0.00 0.00 37.74 1.98
2913 3469 7.415541 GCATAGAAAACTCAACCATGCATAGAA 60.416 37.037 0.00 0.00 37.74 2.10
2914 3470 6.899393 AGAAAACTCAACCATGCATAGAAA 57.101 33.333 0.00 0.00 0.00 2.52
2915 3471 7.288810 AGAAAACTCAACCATGCATAGAAAA 57.711 32.000 0.00 0.00 0.00 2.29
2916 3472 7.147976 AGAAAACTCAACCATGCATAGAAAAC 58.852 34.615 0.00 0.00 0.00 2.43
2917 3473 6.655078 AAACTCAACCATGCATAGAAAACT 57.345 33.333 0.00 0.00 0.00 2.66
2918 3474 5.886960 ACTCAACCATGCATAGAAAACTC 57.113 39.130 0.00 0.00 0.00 3.01
2920 3476 5.769662 ACTCAACCATGCATAGAAAACTCAA 59.230 36.000 0.00 0.00 0.00 3.02
2923 3479 4.406456 ACCATGCATAGAAAACTCAACCA 58.594 39.130 0.00 0.00 0.00 3.67
2924 3480 4.218417 ACCATGCATAGAAAACTCAACCAC 59.782 41.667 0.00 0.00 0.00 4.16
2925 3481 4.218200 CCATGCATAGAAAACTCAACCACA 59.782 41.667 0.00 0.00 0.00 4.17
2926 3482 5.105635 CCATGCATAGAAAACTCAACCACAT 60.106 40.000 0.00 0.00 0.00 3.21
2927 3483 5.375417 TGCATAGAAAACTCAACCACATG 57.625 39.130 0.00 0.00 0.00 3.21
2928 3484 4.168760 GCATAGAAAACTCAACCACATGC 58.831 43.478 0.00 0.00 0.00 4.06
2929 3485 4.082571 GCATAGAAAACTCAACCACATGCT 60.083 41.667 0.00 0.00 34.78 3.79
2930 3486 3.996150 AGAAAACTCAACCACATGCTG 57.004 42.857 0.00 0.00 0.00 4.41
2931 3487 3.290710 AGAAAACTCAACCACATGCTGT 58.709 40.909 0.00 0.00 0.00 4.40
2932 3488 3.316308 AGAAAACTCAACCACATGCTGTC 59.684 43.478 0.00 0.00 0.00 3.51
2933 3489 1.609208 AACTCAACCACATGCTGTCC 58.391 50.000 0.00 0.00 0.00 4.02
2934 3490 0.473755 ACTCAACCACATGCTGTCCA 59.526 50.000 0.00 0.00 0.00 4.02
2952 3665 1.894466 CCATGAGCAAATGTTGTCCCA 59.106 47.619 0.00 0.00 0.00 4.37
2967 3680 9.479549 AATGTTGTCCCAAAACATCTATCTTAT 57.520 29.630 2.53 0.00 45.25 1.73
3042 3755 5.940192 AATAAGTGAACAAGCACATTCGA 57.060 34.783 0.00 0.00 41.19 3.71
3046 3759 3.120546 AGTGAACAAGCACATTCGATTCG 60.121 43.478 0.00 0.00 41.19 3.34
3047 3760 2.159430 TGAACAAGCACATTCGATTCGG 59.841 45.455 6.18 0.00 0.00 4.30
3053 3766 4.083581 AGCACATTCGATTCGGAAAAAG 57.916 40.909 6.18 0.00 0.00 2.27
3054 3767 3.119849 AGCACATTCGATTCGGAAAAAGG 60.120 43.478 6.18 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.646427 TTTTTATTAAACAATGGCATACCTCAC 57.354 29.630 0.00 0.00 36.63 3.51
46 47 8.826765 TGGGCATAAACTTTAATTTGGGAATAA 58.173 29.630 0.00 0.00 0.00 1.40
53 54 8.614469 TTCCTTTGGGCATAAACTTTAATTTG 57.386 30.769 0.00 0.00 0.00 2.32
64 65 2.024080 AGGCAGATTCCTTTGGGCATAA 60.024 45.455 0.00 0.00 30.82 1.90
107 108 0.535335 ATTGATACGAGCGTGGTGGT 59.465 50.000 5.69 0.00 0.00 4.16
121 122 5.087323 AGAGATGGACGGTATGGTATTGAT 58.913 41.667 0.00 0.00 0.00 2.57
122 123 4.480115 AGAGATGGACGGTATGGTATTGA 58.520 43.478 0.00 0.00 0.00 2.57
123 124 4.616143 CGAGAGATGGACGGTATGGTATTG 60.616 50.000 0.00 0.00 0.00 1.90
124 125 3.506455 CGAGAGATGGACGGTATGGTATT 59.494 47.826 0.00 0.00 0.00 1.89
125 126 3.082548 CGAGAGATGGACGGTATGGTAT 58.917 50.000 0.00 0.00 0.00 2.73
126 127 2.158711 ACGAGAGATGGACGGTATGGTA 60.159 50.000 0.00 0.00 0.00 3.25
127 128 1.319541 CGAGAGATGGACGGTATGGT 58.680 55.000 0.00 0.00 0.00 3.55
135 136 1.565305 GTGATGCACGAGAGATGGAC 58.435 55.000 0.00 0.00 0.00 4.02
162 163 8.370940 TGTGTATGCCCTTCAAATTTTCAAATA 58.629 29.630 0.00 0.00 0.00 1.40
163 164 7.222872 TGTGTATGCCCTTCAAATTTTCAAAT 58.777 30.769 0.00 0.00 0.00 2.32
234 237 1.065418 CCGGGGCATAAGGATGATACC 60.065 57.143 0.00 0.00 34.73 2.73
240 243 1.342672 AACGACCGGGGCATAAGGAT 61.343 55.000 6.32 0.00 0.00 3.24
241 244 1.991167 AACGACCGGGGCATAAGGA 60.991 57.895 6.32 0.00 0.00 3.36
246 249 3.605749 CTGTCAACGACCGGGGCAT 62.606 63.158 6.32 0.00 0.00 4.40
249 252 1.605058 ATCTCTGTCAACGACCGGGG 61.605 60.000 6.32 0.00 0.00 5.73
258 261 5.530915 ACATTCGTTTTTCCATCTCTGTCAA 59.469 36.000 0.00 0.00 0.00 3.18
259 262 5.063204 ACATTCGTTTTTCCATCTCTGTCA 58.937 37.500 0.00 0.00 0.00 3.58
261 264 6.231211 ACTACATTCGTTTTTCCATCTCTGT 58.769 36.000 0.00 0.00 0.00 3.41
263 266 6.348540 GCAACTACATTCGTTTTTCCATCTCT 60.349 38.462 0.00 0.00 0.00 3.10
266 269 5.457140 TGCAACTACATTCGTTTTTCCATC 58.543 37.500 0.00 0.00 0.00 3.51
267 270 5.446143 TGCAACTACATTCGTTTTTCCAT 57.554 34.783 0.00 0.00 0.00 3.41
268 271 4.902443 TGCAACTACATTCGTTTTTCCA 57.098 36.364 0.00 0.00 0.00 3.53
269 272 6.128929 GGAAATGCAACTACATTCGTTTTTCC 60.129 38.462 0.00 0.00 39.32 3.13
271 274 6.512297 AGGAAATGCAACTACATTCGTTTTT 58.488 32.000 0.00 0.00 39.32 1.94
277 280 8.494016 ACTACTTAGGAAATGCAACTACATTC 57.506 34.615 0.00 0.00 39.32 2.67
281 284 9.819267 ATCTTACTACTTAGGAAATGCAACTAC 57.181 33.333 0.00 0.00 0.00 2.73
314 317 3.634283 CAAAAATACTTGGCGGTTCGTT 58.366 40.909 0.00 0.00 0.00 3.85
317 320 1.982913 CGCAAAAATACTTGGCGGTTC 59.017 47.619 0.00 0.00 0.00 3.62
369 390 5.707298 AGGGTAGTTCAACATCAAATGACTG 59.293 40.000 0.00 0.00 0.00 3.51
396 417 2.693074 GTGAGGCTCTTGGTTTTTGGAA 59.307 45.455 16.72 0.00 0.00 3.53
559 593 4.570719 CCCCTCCCTTTCTTTTCTGCTTAT 60.571 45.833 0.00 0.00 0.00 1.73
563 597 1.075536 TCCCCTCCCTTTCTTTTCTGC 59.924 52.381 0.00 0.00 0.00 4.26
564 598 2.644798 TCTCCCCTCCCTTTCTTTTCTG 59.355 50.000 0.00 0.00 0.00 3.02
566 600 3.562393 CCTTCTCCCCTCCCTTTCTTTTC 60.562 52.174 0.00 0.00 0.00 2.29
576 610 0.253207 TTCCCTTCCTTCTCCCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
583 617 3.201045 GCTTGTCCTATTCCCTTCCTTCT 59.799 47.826 0.00 0.00 0.00 2.85
586 620 1.486726 CGCTTGTCCTATTCCCTTCCT 59.513 52.381 0.00 0.00 0.00 3.36
588 622 1.954927 CCGCTTGTCCTATTCCCTTC 58.045 55.000 0.00 0.00 0.00 3.46
590 624 1.271840 TGCCGCTTGTCCTATTCCCT 61.272 55.000 0.00 0.00 0.00 4.20
592 626 0.107654 ACTGCCGCTTGTCCTATTCC 60.108 55.000 0.00 0.00 0.00 3.01
826 888 4.605967 GAGAGCGAGCGAGCGAGG 62.606 72.222 1.41 0.00 43.00 4.63
827 889 2.857380 TTTGAGAGCGAGCGAGCGAG 62.857 60.000 1.41 0.00 43.00 5.03
828 890 2.472232 TTTTGAGAGCGAGCGAGCGA 62.472 55.000 1.41 0.00 43.00 4.93
829 891 1.617755 TTTTTGAGAGCGAGCGAGCG 61.618 55.000 0.00 0.00 43.00 5.03
830 892 0.094387 CTTTTTGAGAGCGAGCGAGC 59.906 55.000 0.00 0.00 37.41 5.03
959 1021 1.738099 CGTTGAAGACAGGAGCCGG 60.738 63.158 0.00 0.00 0.00 6.13
1172 1254 5.474189 TGCATACATACATCATTCACCCATG 59.526 40.000 0.00 0.00 0.00 3.66
1174 1256 5.046288 TGCATACATACATCATTCACCCA 57.954 39.130 0.00 0.00 0.00 4.51
1188 1282 0.394216 ACCACGCACCATGCATACAT 60.394 50.000 0.00 0.00 45.36 2.29
1375 1473 5.885352 ACCGATCTATCTATCTCCACTGATG 59.115 44.000 0.00 0.00 0.00 3.07
1398 1496 2.278401 GTACGCCCGTGGATCGAC 60.278 66.667 3.22 0.00 42.86 4.20
1634 1755 3.153270 TACTGGTGTTGGTGCGCGA 62.153 57.895 12.10 0.00 0.00 5.87
1839 1960 4.371417 TCGTCCGGCTGGTAGGGT 62.371 66.667 12.43 0.00 36.30 4.34
2034 2161 1.612469 CTAGCGGCGCGATGAATCTG 61.612 60.000 27.59 3.26 0.00 2.90
2188 2315 7.283329 AGTAGCTGTGAATTAATAGAAAGGGG 58.717 38.462 0.00 0.00 0.00 4.79
2209 2343 0.528470 GGCCCGATGCTAGCTAGTAG 59.472 60.000 21.62 6.85 40.92 2.57
2210 2344 0.178973 TGGCCCGATGCTAGCTAGTA 60.179 55.000 21.62 18.12 40.92 1.82
2211 2345 0.833834 ATGGCCCGATGCTAGCTAGT 60.834 55.000 21.62 2.88 40.92 2.57
2212 2346 0.390866 CATGGCCCGATGCTAGCTAG 60.391 60.000 16.84 16.84 40.92 3.42
2213 2347 1.673477 CATGGCCCGATGCTAGCTA 59.327 57.895 17.23 2.58 40.92 3.32
2323 2457 4.693283 TGAACTTCCTATGGCACGATTAG 58.307 43.478 0.00 0.00 0.00 1.73
2328 2462 2.905075 TGATGAACTTCCTATGGCACG 58.095 47.619 0.00 0.00 0.00 5.34
2329 2463 3.817647 GGATGATGAACTTCCTATGGCAC 59.182 47.826 0.00 0.00 39.04 5.01
2351 2485 8.196771 GGATATGCTTGATTAGATCTAGTGGAG 58.803 40.741 1.95 1.98 35.10 3.86
2383 2517 1.353091 GATGGGCCTAACTCCCCTAG 58.647 60.000 4.53 0.00 43.24 3.02
2397 2531 2.632028 CACTCACTCCCTAGATGATGGG 59.368 54.545 0.00 0.00 44.66 4.00
2398 2532 3.570540 TCACTCACTCCCTAGATGATGG 58.429 50.000 0.00 0.00 0.00 3.51
2426 2567 2.480416 CGCTCACTCCCACTCTCATTAC 60.480 54.545 0.00 0.00 0.00 1.89
2428 2569 0.534412 CGCTCACTCCCACTCTCATT 59.466 55.000 0.00 0.00 0.00 2.57
2489 2630 1.593750 GCTAGCCTGCAGACATCCG 60.594 63.158 17.39 0.00 0.00 4.18
2560 2701 4.039703 GCGTACAAGACAAACCCTTTTTC 58.960 43.478 0.00 0.00 0.00 2.29
2580 2721 1.569493 CCACTCCGTTCACAAAGCG 59.431 57.895 0.00 0.00 0.00 4.68
2582 2723 1.949257 GGCCACTCCGTTCACAAAG 59.051 57.895 0.00 0.00 0.00 2.77
2583 2724 4.150994 GGCCACTCCGTTCACAAA 57.849 55.556 0.00 0.00 0.00 2.83
2606 2747 9.930158 TGGTGGGCTAATTAGTAATTTAATCTT 57.070 29.630 13.20 0.00 32.38 2.40
2607 2748 9.930158 TTGGTGGGCTAATTAGTAATTTAATCT 57.070 29.630 13.20 0.00 32.38 2.40
2609 2750 9.709387 AGTTGGTGGGCTAATTAGTAATTTAAT 57.291 29.630 13.20 0.00 32.38 1.40
2610 2751 9.181061 GAGTTGGTGGGCTAATTAGTAATTTAA 57.819 33.333 13.20 0.00 32.38 1.52
2611 2752 7.776500 GGAGTTGGTGGGCTAATTAGTAATTTA 59.224 37.037 13.20 0.28 32.38 1.40
2612 2753 6.605995 GGAGTTGGTGGGCTAATTAGTAATTT 59.394 38.462 13.20 0.00 32.38 1.82
2613 2754 6.127101 GGAGTTGGTGGGCTAATTAGTAATT 58.873 40.000 13.91 12.61 34.90 1.40
2616 2757 3.133362 CGGAGTTGGTGGGCTAATTAGTA 59.867 47.826 13.91 0.00 0.00 1.82
2617 2758 2.093128 CGGAGTTGGTGGGCTAATTAGT 60.093 50.000 13.91 0.00 0.00 2.24
2618 2759 2.561569 CGGAGTTGGTGGGCTAATTAG 58.438 52.381 8.20 8.20 0.00 1.73
2619 2760 1.210967 CCGGAGTTGGTGGGCTAATTA 59.789 52.381 0.00 0.00 0.00 1.40
2620 2761 0.034477 CCGGAGTTGGTGGGCTAATT 60.034 55.000 0.00 0.00 0.00 1.40
2623 2764 3.712907 GCCGGAGTTGGTGGGCTA 61.713 66.667 5.05 0.00 42.29 3.93
2625 2766 4.740822 ATGCCGGAGTTGGTGGGC 62.741 66.667 5.05 0.00 45.76 5.36
2626 2767 2.438434 GATGCCGGAGTTGGTGGG 60.438 66.667 5.05 0.00 0.00 4.61
2627 2768 2.438434 GGATGCCGGAGTTGGTGG 60.438 66.667 5.05 0.00 0.00 4.61
2628 2769 2.040544 GTGGATGCCGGAGTTGGTG 61.041 63.158 5.05 0.00 0.00 4.17
2629 2770 2.063015 TTGTGGATGCCGGAGTTGGT 62.063 55.000 5.05 0.00 0.00 3.67
2630 2771 1.303236 TTGTGGATGCCGGAGTTGG 60.303 57.895 5.05 0.00 0.00 3.77
2631 2772 1.586154 GGTTGTGGATGCCGGAGTTG 61.586 60.000 5.05 0.00 0.00 3.16
2632 2773 1.303317 GGTTGTGGATGCCGGAGTT 60.303 57.895 5.05 0.00 0.00 3.01
2633 2774 2.351276 GGTTGTGGATGCCGGAGT 59.649 61.111 5.05 0.00 0.00 3.85
2634 2775 2.438434 GGGTTGTGGATGCCGGAG 60.438 66.667 5.05 0.00 0.00 4.63
2635 2776 4.041762 GGGGTTGTGGATGCCGGA 62.042 66.667 5.05 0.00 0.00 5.14
2636 2777 3.877344 TTGGGGTTGTGGATGCCGG 62.877 63.158 0.00 0.00 0.00 6.13
2637 2778 2.282816 TTGGGGTTGTGGATGCCG 60.283 61.111 0.00 0.00 0.00 5.69
2638 2779 2.282783 GGTTGGGGTTGTGGATGCC 61.283 63.158 0.00 0.00 0.00 4.40
2639 2780 2.282783 GGGTTGGGGTTGTGGATGC 61.283 63.158 0.00 0.00 0.00 3.91
2640 2781 1.609210 GGGGTTGGGGTTGTGGATG 60.609 63.158 0.00 0.00 0.00 3.51
2641 2782 1.669927 TTGGGGTTGGGGTTGTGGAT 61.670 55.000 0.00 0.00 0.00 3.41
2642 2783 2.305314 CTTGGGGTTGGGGTTGTGGA 62.305 60.000 0.00 0.00 0.00 4.02
2643 2784 1.836604 CTTGGGGTTGGGGTTGTGG 60.837 63.158 0.00 0.00 0.00 4.17
2644 2785 0.397816 TTCTTGGGGTTGGGGTTGTG 60.398 55.000 0.00 0.00 0.00 3.33
2645 2786 0.105709 CTTCTTGGGGTTGGGGTTGT 60.106 55.000 0.00 0.00 0.00 3.32
2646 2787 0.831711 CCTTCTTGGGGTTGGGGTTG 60.832 60.000 0.00 0.00 0.00 3.77
2647 2788 1.546738 CCTTCTTGGGGTTGGGGTT 59.453 57.895 0.00 0.00 0.00 4.11
2648 2789 3.160478 GCCTTCTTGGGGTTGGGGT 62.160 63.158 0.00 0.00 36.00 4.95
2649 2790 2.283894 GCCTTCTTGGGGTTGGGG 60.284 66.667 0.00 0.00 36.00 4.96
2650 2791 2.283894 GGCCTTCTTGGGGTTGGG 60.284 66.667 0.00 0.00 36.00 4.12
2651 2792 1.607467 CTGGCCTTCTTGGGGTTGG 60.607 63.158 3.32 0.00 36.00 3.77
2652 2793 0.895559 GTCTGGCCTTCTTGGGGTTG 60.896 60.000 3.32 0.00 36.00 3.77
2653 2794 1.360393 TGTCTGGCCTTCTTGGGGTT 61.360 55.000 3.32 0.00 36.00 4.11
2654 2795 1.774217 TGTCTGGCCTTCTTGGGGT 60.774 57.895 3.32 0.00 36.00 4.95
2655 2796 1.303643 GTGTCTGGCCTTCTTGGGG 60.304 63.158 3.32 0.00 36.00 4.96
2656 2797 0.607489 CTGTGTCTGGCCTTCTTGGG 60.607 60.000 3.32 0.00 36.00 4.12
2657 2798 1.239968 GCTGTGTCTGGCCTTCTTGG 61.240 60.000 3.32 0.00 39.35 3.61
2658 2799 0.535780 TGCTGTGTCTGGCCTTCTTG 60.536 55.000 3.32 0.00 0.00 3.02
2659 2800 0.536006 GTGCTGTGTCTGGCCTTCTT 60.536 55.000 3.32 0.00 0.00 2.52
2660 2801 1.072159 GTGCTGTGTCTGGCCTTCT 59.928 57.895 3.32 0.00 0.00 2.85
2661 2802 1.227943 TGTGCTGTGTCTGGCCTTC 60.228 57.895 3.32 0.00 0.00 3.46
2662 2803 1.526917 GTGTGCTGTGTCTGGCCTT 60.527 57.895 3.32 0.00 0.00 4.35
2663 2804 2.111878 GTGTGCTGTGTCTGGCCT 59.888 61.111 3.32 0.00 0.00 5.19
2664 2805 3.349006 CGTGTGCTGTGTCTGGCC 61.349 66.667 0.00 0.00 0.00 5.36
2665 2806 4.017877 GCGTGTGCTGTGTCTGGC 62.018 66.667 0.00 0.00 38.39 4.85
2666 2807 3.349006 GGCGTGTGCTGTGTCTGG 61.349 66.667 0.00 0.00 42.25 3.86
2667 2808 2.109538 CTTGGCGTGTGCTGTGTCTG 62.110 60.000 0.00 0.00 42.25 3.51
2668 2809 1.889105 CTTGGCGTGTGCTGTGTCT 60.889 57.895 0.00 0.00 42.25 3.41
2669 2810 2.633657 CTTGGCGTGTGCTGTGTC 59.366 61.111 0.00 0.00 42.25 3.67
2670 2811 3.585990 GCTTGGCGTGTGCTGTGT 61.586 61.111 0.00 0.00 42.25 3.72
2671 2812 3.245948 GAGCTTGGCGTGTGCTGTG 62.246 63.158 0.00 0.00 42.25 3.66
2672 2813 2.974698 GAGCTTGGCGTGTGCTGT 60.975 61.111 0.00 0.00 42.25 4.40
2673 2814 2.667536 AGAGCTTGGCGTGTGCTG 60.668 61.111 0.00 0.00 42.25 4.41
2674 2815 2.358003 GAGAGCTTGGCGTGTGCT 60.358 61.111 0.00 0.00 42.25 4.40
2675 2816 2.358003 AGAGAGCTTGGCGTGTGC 60.358 61.111 0.00 0.00 41.71 4.57
2676 2817 1.005748 TCAGAGAGCTTGGCGTGTG 60.006 57.895 0.00 0.00 0.00 3.82
2677 2818 1.005630 GTCAGAGAGCTTGGCGTGT 60.006 57.895 0.00 0.00 0.00 4.49
2678 2819 1.739562 GGTCAGAGAGCTTGGCGTG 60.740 63.158 0.00 0.00 0.00 5.34
2679 2820 1.548357 ATGGTCAGAGAGCTTGGCGT 61.548 55.000 0.00 0.00 0.00 5.68
2680 2821 0.392193 AATGGTCAGAGAGCTTGGCG 60.392 55.000 0.00 0.00 0.00 5.69
2681 2822 2.698855 TAATGGTCAGAGAGCTTGGC 57.301 50.000 0.00 0.00 0.00 4.52
2682 2823 4.187694 GACTTAATGGTCAGAGAGCTTGG 58.812 47.826 0.00 0.00 36.35 3.61
2683 2824 4.825422 TGACTTAATGGTCAGAGAGCTTG 58.175 43.478 0.00 0.00 40.72 4.01
2693 2834 7.859325 TTGGCTAGTTAATGACTTAATGGTC 57.141 36.000 0.00 0.00 39.86 4.02
2694 2835 8.644374 TTTTGGCTAGTTAATGACTTAATGGT 57.356 30.769 0.00 0.00 39.86 3.55
2695 2836 9.573133 CTTTTTGGCTAGTTAATGACTTAATGG 57.427 33.333 0.00 0.00 39.86 3.16
2696 2837 9.076596 GCTTTTTGGCTAGTTAATGACTTAATG 57.923 33.333 0.00 0.00 39.86 1.90
2697 2838 9.025041 AGCTTTTTGGCTAGTTAATGACTTAAT 57.975 29.630 0.00 0.00 41.16 1.40
2698 2839 8.404107 AGCTTTTTGGCTAGTTAATGACTTAA 57.596 30.769 0.00 0.00 41.16 1.85
2699 2840 7.120726 GGAGCTTTTTGGCTAGTTAATGACTTA 59.879 37.037 0.00 0.00 43.20 2.24
2700 2841 6.071896 GGAGCTTTTTGGCTAGTTAATGACTT 60.072 38.462 0.00 0.00 43.20 3.01
2701 2842 5.416013 GGAGCTTTTTGGCTAGTTAATGACT 59.584 40.000 0.00 0.00 43.20 3.41
2702 2843 5.416013 AGGAGCTTTTTGGCTAGTTAATGAC 59.584 40.000 0.00 0.00 43.20 3.06
2703 2844 5.570320 AGGAGCTTTTTGGCTAGTTAATGA 58.430 37.500 0.00 0.00 43.20 2.57
2704 2845 5.415701 TGAGGAGCTTTTTGGCTAGTTAATG 59.584 40.000 0.00 0.00 43.20 1.90
2705 2846 5.570320 TGAGGAGCTTTTTGGCTAGTTAAT 58.430 37.500 0.00 0.00 43.20 1.40
2706 2847 4.980573 TGAGGAGCTTTTTGGCTAGTTAA 58.019 39.130 0.00 0.00 43.20 2.01
2707 2848 4.041691 ACTGAGGAGCTTTTTGGCTAGTTA 59.958 41.667 0.00 0.00 43.20 2.24
2708 2849 3.181439 ACTGAGGAGCTTTTTGGCTAGTT 60.181 43.478 0.00 0.00 43.20 2.24
2709 2850 2.373502 ACTGAGGAGCTTTTTGGCTAGT 59.626 45.455 0.00 0.00 43.20 2.57
2710 2851 3.006247 GACTGAGGAGCTTTTTGGCTAG 58.994 50.000 0.00 0.00 43.20 3.42
2711 2852 2.290323 GGACTGAGGAGCTTTTTGGCTA 60.290 50.000 0.00 0.00 43.20 3.93
2712 2853 1.546548 GGACTGAGGAGCTTTTTGGCT 60.547 52.381 0.00 0.00 46.11 4.75
2713 2854 0.884514 GGACTGAGGAGCTTTTTGGC 59.115 55.000 0.00 0.00 0.00 4.52
2714 2855 2.276732 TGGACTGAGGAGCTTTTTGG 57.723 50.000 0.00 0.00 0.00 3.28
2715 2856 2.094854 GCATGGACTGAGGAGCTTTTTG 60.095 50.000 0.00 0.00 0.00 2.44
2716 2857 2.165998 GCATGGACTGAGGAGCTTTTT 58.834 47.619 0.00 0.00 0.00 1.94
2717 2858 1.615384 GGCATGGACTGAGGAGCTTTT 60.615 52.381 0.00 0.00 0.00 2.27
2718 2859 0.034670 GGCATGGACTGAGGAGCTTT 60.035 55.000 0.00 0.00 0.00 3.51
2719 2860 1.606531 GGCATGGACTGAGGAGCTT 59.393 57.895 0.00 0.00 0.00 3.74
2720 2861 2.373707 GGGCATGGACTGAGGAGCT 61.374 63.158 0.00 0.00 0.00 4.09
2721 2862 2.191641 GGGCATGGACTGAGGAGC 59.808 66.667 0.00 0.00 0.00 4.70
2722 2863 1.692042 AGGGGCATGGACTGAGGAG 60.692 63.158 0.00 0.00 0.00 3.69
2723 2864 1.690633 GAGGGGCATGGACTGAGGA 60.691 63.158 0.00 0.00 0.00 3.71
2724 2865 2.750657 GGAGGGGCATGGACTGAGG 61.751 68.421 0.00 0.00 0.00 3.86
2725 2866 2.750657 GGGAGGGGCATGGACTGAG 61.751 68.421 0.00 0.00 0.00 3.35
2726 2867 2.692368 GGGAGGGGCATGGACTGA 60.692 66.667 0.00 0.00 0.00 3.41
2727 2868 3.813724 GGGGAGGGGCATGGACTG 61.814 72.222 0.00 0.00 0.00 3.51
2728 2869 4.044390 AGGGGAGGGGCATGGACT 62.044 66.667 0.00 0.00 0.00 3.85
2729 2870 3.493303 GAGGGGAGGGGCATGGAC 61.493 72.222 0.00 0.00 0.00 4.02
2730 2871 4.843331 GGAGGGGAGGGGCATGGA 62.843 72.222 0.00 0.00 0.00 3.41
2731 2872 4.851252 AGGAGGGGAGGGGCATGG 62.851 72.222 0.00 0.00 0.00 3.66
2732 2873 3.174265 GAGGAGGGGAGGGGCATG 61.174 72.222 0.00 0.00 0.00 4.06
2733 2874 4.523282 GGAGGAGGGGAGGGGCAT 62.523 72.222 0.00 0.00 0.00 4.40
2735 2876 4.890306 GAGGAGGAGGGGAGGGGC 62.890 77.778 0.00 0.00 0.00 5.80
2736 2877 4.179599 GGAGGAGGAGGGGAGGGG 62.180 77.778 0.00 0.00 0.00 4.79
2737 2878 2.731461 ATGGAGGAGGAGGGGAGGG 61.731 68.421 0.00 0.00 0.00 4.30
2738 2879 1.461075 CATGGAGGAGGAGGGGAGG 60.461 68.421 0.00 0.00 0.00 4.30
2739 2880 1.461075 CCATGGAGGAGGAGGGGAG 60.461 68.421 5.56 0.00 41.22 4.30
2740 2881 2.705410 CCATGGAGGAGGAGGGGA 59.295 66.667 5.56 0.00 41.22 4.81
2741 2882 3.174265 GCCATGGAGGAGGAGGGG 61.174 72.222 18.40 0.00 41.22 4.79
2742 2883 2.367377 TGCCATGGAGGAGGAGGG 60.367 66.667 18.40 0.00 41.22 4.30
2743 2884 1.277580 AAGTGCCATGGAGGAGGAGG 61.278 60.000 18.40 0.00 41.22 4.30
2744 2885 0.622665 AAAGTGCCATGGAGGAGGAG 59.377 55.000 18.40 0.00 41.22 3.69
2745 2886 1.965414 TAAAGTGCCATGGAGGAGGA 58.035 50.000 18.40 0.00 41.22 3.71
2746 2887 2.487986 GGATAAAGTGCCATGGAGGAGG 60.488 54.545 18.40 0.00 41.22 4.30
2747 2888 2.487986 GGGATAAAGTGCCATGGAGGAG 60.488 54.545 18.40 0.00 41.22 3.69
2748 2889 1.494721 GGGATAAAGTGCCATGGAGGA 59.505 52.381 18.40 0.00 41.22 3.71
2749 2890 1.479389 GGGGATAAAGTGCCATGGAGG 60.479 57.143 18.40 0.00 40.78 4.30
2750 2891 1.496429 AGGGGATAAAGTGCCATGGAG 59.504 52.381 18.40 0.00 40.78 3.86
2751 2892 1.607225 AGGGGATAAAGTGCCATGGA 58.393 50.000 18.40 0.00 40.78 3.41
2752 2893 2.310538 GAAGGGGATAAAGTGCCATGG 58.689 52.381 7.63 7.63 40.78 3.66
2753 2894 3.017048 TGAAGGGGATAAAGTGCCATG 57.983 47.619 0.00 0.00 40.78 3.66
2754 2895 3.979501 ATGAAGGGGATAAAGTGCCAT 57.020 42.857 0.00 0.00 40.78 4.40
2755 2896 3.756082 AATGAAGGGGATAAAGTGCCA 57.244 42.857 0.00 0.00 40.78 4.92
2756 2897 4.953579 TGTTAATGAAGGGGATAAAGTGCC 59.046 41.667 0.00 0.00 37.65 5.01
2757 2898 5.163550 GGTGTTAATGAAGGGGATAAAGTGC 60.164 44.000 0.00 0.00 0.00 4.40
2758 2899 6.187682 AGGTGTTAATGAAGGGGATAAAGTG 58.812 40.000 0.00 0.00 0.00 3.16
2759 2900 6.217693 AGAGGTGTTAATGAAGGGGATAAAGT 59.782 38.462 0.00 0.00 0.00 2.66
2760 2901 6.663734 AGAGGTGTTAATGAAGGGGATAAAG 58.336 40.000 0.00 0.00 0.00 1.85
2761 2902 6.353602 GGAGAGGTGTTAATGAAGGGGATAAA 60.354 42.308 0.00 0.00 0.00 1.40
2762 2903 5.132144 GGAGAGGTGTTAATGAAGGGGATAA 59.868 44.000 0.00 0.00 0.00 1.75
2763 2904 4.658901 GGAGAGGTGTTAATGAAGGGGATA 59.341 45.833 0.00 0.00 0.00 2.59
2764 2905 3.459969 GGAGAGGTGTTAATGAAGGGGAT 59.540 47.826 0.00 0.00 0.00 3.85
2765 2906 2.844348 GGAGAGGTGTTAATGAAGGGGA 59.156 50.000 0.00 0.00 0.00 4.81
2766 2907 2.092375 GGGAGAGGTGTTAATGAAGGGG 60.092 54.545 0.00 0.00 0.00 4.79
2767 2908 2.576191 TGGGAGAGGTGTTAATGAAGGG 59.424 50.000 0.00 0.00 0.00 3.95
2768 2909 4.510167 ATGGGAGAGGTGTTAATGAAGG 57.490 45.455 0.00 0.00 0.00 3.46
2769 2910 5.131142 AGGTATGGGAGAGGTGTTAATGAAG 59.869 44.000 0.00 0.00 0.00 3.02
2770 2911 5.036916 AGGTATGGGAGAGGTGTTAATGAA 58.963 41.667 0.00 0.00 0.00 2.57
2771 2912 4.631234 AGGTATGGGAGAGGTGTTAATGA 58.369 43.478 0.00 0.00 0.00 2.57
2772 2913 5.131142 AGAAGGTATGGGAGAGGTGTTAATG 59.869 44.000 0.00 0.00 0.00 1.90
2773 2914 5.289510 AGAAGGTATGGGAGAGGTGTTAAT 58.710 41.667 0.00 0.00 0.00 1.40
2774 2915 4.695606 AGAAGGTATGGGAGAGGTGTTAA 58.304 43.478 0.00 0.00 0.00 2.01
2775 2916 4.348020 AGAAGGTATGGGAGAGGTGTTA 57.652 45.455 0.00 0.00 0.00 2.41
2776 2917 3.207044 AGAAGGTATGGGAGAGGTGTT 57.793 47.619 0.00 0.00 0.00 3.32
2777 2918 2.950990 AGAAGGTATGGGAGAGGTGT 57.049 50.000 0.00 0.00 0.00 4.16
2778 2919 2.966516 GGTAGAAGGTATGGGAGAGGTG 59.033 54.545 0.00 0.00 0.00 4.00
2779 2920 2.866454 AGGTAGAAGGTATGGGAGAGGT 59.134 50.000 0.00 0.00 0.00 3.85
2780 2921 3.621682 AGGTAGAAGGTATGGGAGAGG 57.378 52.381 0.00 0.00 0.00 3.69
2781 2922 4.106663 AGGTAGGTAGAAGGTATGGGAGAG 59.893 50.000 0.00 0.00 0.00 3.20
2782 2923 4.060192 AGGTAGGTAGAAGGTATGGGAGA 58.940 47.826 0.00 0.00 0.00 3.71
2783 2924 4.472690 AGGTAGGTAGAAGGTATGGGAG 57.527 50.000 0.00 0.00 0.00 4.30
2784 2925 4.106987 GGTAGGTAGGTAGAAGGTATGGGA 59.893 50.000 0.00 0.00 0.00 4.37
2791 2932 5.103771 TCTGGTTAGGTAGGTAGGTAGAAGG 60.104 48.000 0.00 0.00 0.00 3.46
2792 2933 6.011122 TCTGGTTAGGTAGGTAGGTAGAAG 57.989 45.833 0.00 0.00 0.00 2.85
2797 2938 7.072076 CCATATTTTCTGGTTAGGTAGGTAGGT 59.928 40.741 0.00 0.00 0.00 3.08
2798 2939 7.450903 CCATATTTTCTGGTTAGGTAGGTAGG 58.549 42.308 0.00 0.00 0.00 3.18
2799 2940 7.450903 CCCATATTTTCTGGTTAGGTAGGTAG 58.549 42.308 0.00 0.00 31.44 3.18
2802 2943 5.070685 GCCCATATTTTCTGGTTAGGTAGG 58.929 45.833 0.00 0.00 31.44 3.18
2803 2944 5.690865 TGCCCATATTTTCTGGTTAGGTAG 58.309 41.667 0.00 0.00 31.44 3.18
2805 2946 4.601406 TGCCCATATTTTCTGGTTAGGT 57.399 40.909 0.00 0.00 31.44 3.08
2806 2947 5.011023 GGAATGCCCATATTTTCTGGTTAGG 59.989 44.000 0.00 0.00 34.14 2.69
2807 2948 5.598005 TGGAATGCCCATATTTTCTGGTTAG 59.402 40.000 0.00 0.00 40.82 2.34
2810 2951 3.992999 TGGAATGCCCATATTTTCTGGT 58.007 40.909 0.00 0.00 40.82 4.00
2825 2966 0.968901 AGTGGGCAGCATGTGGAATG 60.969 55.000 0.00 0.00 39.31 2.67
2826 2967 0.682209 GAGTGGGCAGCATGTGGAAT 60.682 55.000 0.00 0.00 39.31 3.01
2827 2968 1.303561 GAGTGGGCAGCATGTGGAA 60.304 57.895 0.00 0.00 39.31 3.53
2828 2969 2.352422 GAGTGGGCAGCATGTGGA 59.648 61.111 0.00 0.00 39.31 4.02
2829 2970 2.753043 GGAGTGGGCAGCATGTGG 60.753 66.667 0.00 0.00 39.31 4.17
2830 2971 2.753043 GGGAGTGGGCAGCATGTG 60.753 66.667 0.00 0.00 39.31 3.21
2831 2972 3.259314 TGGGAGTGGGCAGCATGT 61.259 61.111 0.00 0.00 39.31 3.21
2832 2973 2.753043 GTGGGAGTGGGCAGCATG 60.753 66.667 0.00 0.00 40.87 4.06
2833 2974 2.937689 AGTGGGAGTGGGCAGCAT 60.938 61.111 0.00 0.00 0.00 3.79
2834 2975 3.640407 GAGTGGGAGTGGGCAGCA 61.640 66.667 0.00 0.00 0.00 4.41
2835 2976 4.416738 GGAGTGGGAGTGGGCAGC 62.417 72.222 0.00 0.00 0.00 5.25
2836 2977 3.721706 GGGAGTGGGAGTGGGCAG 61.722 72.222 0.00 0.00 0.00 4.85
2839 2980 4.354943 AGGGGGAGTGGGAGTGGG 62.355 72.222 0.00 0.00 0.00 4.61
2840 2981 2.689034 GAGGGGGAGTGGGAGTGG 60.689 72.222 0.00 0.00 0.00 4.00
2841 2982 1.687493 GAGAGGGGGAGTGGGAGTG 60.687 68.421 0.00 0.00 0.00 3.51
2842 2983 2.781406 GAGAGGGGGAGTGGGAGT 59.219 66.667 0.00 0.00 0.00 3.85
2843 2984 2.041405 GGAGAGGGGGAGTGGGAG 60.041 72.222 0.00 0.00 0.00 4.30
2844 2985 2.540910 AGGAGAGGGGGAGTGGGA 60.541 66.667 0.00 0.00 0.00 4.37
2845 2986 2.041405 GAGGAGAGGGGGAGTGGG 60.041 72.222 0.00 0.00 0.00 4.61
2846 2987 1.075600 GAGAGGAGAGGGGGAGTGG 60.076 68.421 0.00 0.00 0.00 4.00
2847 2988 1.133606 GTAGAGAGGAGAGGGGGAGTG 60.134 61.905 0.00 0.00 0.00 3.51
2849 2990 1.529744 AGTAGAGAGGAGAGGGGGAG 58.470 60.000 0.00 0.00 0.00 4.30
2851 2992 2.374170 GTCTAGTAGAGAGGAGAGGGGG 59.626 59.091 0.00 0.00 33.72 5.40
2854 2995 4.885325 GGTTTGTCTAGTAGAGAGGAGAGG 59.115 50.000 0.00 0.00 33.72 3.69
2855 2996 4.885325 GGGTTTGTCTAGTAGAGAGGAGAG 59.115 50.000 0.00 0.00 33.72 3.20
2856 2997 4.540906 AGGGTTTGTCTAGTAGAGAGGAGA 59.459 45.833 0.00 0.00 33.72 3.71
2857 2998 4.862371 AGGGTTTGTCTAGTAGAGAGGAG 58.138 47.826 0.00 0.00 33.72 3.69
2858 2999 4.949966 AGGGTTTGTCTAGTAGAGAGGA 57.050 45.455 0.00 0.00 33.72 3.71
2859 3000 6.361768 AAAAGGGTTTGTCTAGTAGAGAGG 57.638 41.667 0.00 0.00 33.72 3.69
2860 3001 7.442656 TGAAAAAGGGTTTGTCTAGTAGAGAG 58.557 38.462 0.00 0.00 33.72 3.20
2861 3002 7.369551 TGAAAAAGGGTTTGTCTAGTAGAGA 57.630 36.000 0.00 0.00 0.00 3.10
2862 3003 7.361286 GCATGAAAAAGGGTTTGTCTAGTAGAG 60.361 40.741 0.00 0.00 0.00 2.43
2863 3004 6.430000 GCATGAAAAAGGGTTTGTCTAGTAGA 59.570 38.462 0.00 0.00 0.00 2.59
2864 3005 6.206634 TGCATGAAAAAGGGTTTGTCTAGTAG 59.793 38.462 0.00 0.00 0.00 2.57
2865 3006 6.065374 TGCATGAAAAAGGGTTTGTCTAGTA 58.935 36.000 0.00 0.00 0.00 1.82
2866 3007 4.892934 TGCATGAAAAAGGGTTTGTCTAGT 59.107 37.500 0.00 0.00 0.00 2.57
2867 3008 5.452078 TGCATGAAAAAGGGTTTGTCTAG 57.548 39.130 0.00 0.00 0.00 2.43
2868 3009 6.945435 TCTATGCATGAAAAAGGGTTTGTCTA 59.055 34.615 10.16 0.00 0.00 2.59
2869 3010 4.961438 ATGCATGAAAAAGGGTTTGTCT 57.039 36.364 0.00 0.00 0.00 3.41
2871 3012 6.418057 TTCTATGCATGAAAAAGGGTTTGT 57.582 33.333 10.16 0.00 0.00 2.83
2872 3013 7.442062 AGTTTTCTATGCATGAAAAAGGGTTTG 59.558 33.333 25.21 0.00 42.59 2.93
2873 3014 7.508687 AGTTTTCTATGCATGAAAAAGGGTTT 58.491 30.769 25.21 12.66 42.59 3.27
2874 3015 7.066307 AGTTTTCTATGCATGAAAAAGGGTT 57.934 32.000 25.21 13.72 42.59 4.11
2875 3016 6.267471 TGAGTTTTCTATGCATGAAAAAGGGT 59.733 34.615 25.21 16.26 42.59 4.34
2876 3017 6.690530 TGAGTTTTCTATGCATGAAAAAGGG 58.309 36.000 25.21 4.49 42.59 3.95
2892 3448 7.147976 AGTTTTCTATGCATGGTTGAGTTTTC 58.852 34.615 10.16 0.00 0.00 2.29
2893 3449 7.054491 AGTTTTCTATGCATGGTTGAGTTTT 57.946 32.000 10.16 0.00 0.00 2.43
2894 3450 6.265196 TGAGTTTTCTATGCATGGTTGAGTTT 59.735 34.615 10.16 0.00 0.00 2.66
2895 3451 5.769662 TGAGTTTTCTATGCATGGTTGAGTT 59.230 36.000 10.16 0.00 0.00 3.01
2896 3452 5.316167 TGAGTTTTCTATGCATGGTTGAGT 58.684 37.500 10.16 0.00 0.00 3.41
2897 3453 5.885230 TGAGTTTTCTATGCATGGTTGAG 57.115 39.130 10.16 0.00 0.00 3.02
2898 3454 5.048083 GGTTGAGTTTTCTATGCATGGTTGA 60.048 40.000 10.16 0.00 0.00 3.18
2899 3455 5.163513 GGTTGAGTTTTCTATGCATGGTTG 58.836 41.667 10.16 0.00 0.00 3.77
2900 3456 4.832266 TGGTTGAGTTTTCTATGCATGGTT 59.168 37.500 10.16 0.00 0.00 3.67
2901 3457 4.218417 GTGGTTGAGTTTTCTATGCATGGT 59.782 41.667 10.16 0.00 0.00 3.55
2902 3458 4.218200 TGTGGTTGAGTTTTCTATGCATGG 59.782 41.667 10.16 6.58 0.00 3.66
2903 3459 5.375417 TGTGGTTGAGTTTTCTATGCATG 57.625 39.130 10.16 0.00 0.00 4.06
2904 3460 5.622914 GCATGTGGTTGAGTTTTCTATGCAT 60.623 40.000 3.79 3.79 38.50 3.96
2905 3461 4.321156 GCATGTGGTTGAGTTTTCTATGCA 60.321 41.667 0.00 0.00 38.50 3.96
2907 3463 5.396484 CAGCATGTGGTTGAGTTTTCTATG 58.604 41.667 0.00 0.00 0.00 2.23
2908 3464 5.633830 CAGCATGTGGTTGAGTTTTCTAT 57.366 39.130 0.00 0.00 0.00 1.98
2910 3466 3.996150 CAGCATGTGGTTGAGTTTTCT 57.004 42.857 0.00 0.00 0.00 2.52
2924 3480 2.165641 ACATTTGCTCATGGACAGCATG 59.834 45.455 8.26 7.46 46.24 4.06
2925 3481 2.453521 ACATTTGCTCATGGACAGCAT 58.546 42.857 8.26 0.00 46.24 3.79
2926 3482 1.913778 ACATTTGCTCATGGACAGCA 58.086 45.000 3.57 3.57 45.32 4.41
2927 3483 2.029649 ACAACATTTGCTCATGGACAGC 60.030 45.455 0.00 0.00 37.40 4.40
2928 3484 3.366679 GGACAACATTTGCTCATGGACAG 60.367 47.826 0.00 0.00 0.00 3.51
2929 3485 2.557924 GGACAACATTTGCTCATGGACA 59.442 45.455 0.00 0.00 0.00 4.02
2930 3486 2.094545 GGGACAACATTTGCTCATGGAC 60.095 50.000 0.00 0.00 0.00 4.02
2931 3487 2.170166 GGGACAACATTTGCTCATGGA 58.830 47.619 0.00 0.00 0.00 3.41
2932 3488 1.894466 TGGGACAACATTTGCTCATGG 59.106 47.619 0.00 0.00 31.92 3.66
2990 3703 8.846607 GTTCGTATATTGAAACATCCAAAACAC 58.153 33.333 0.00 0.00 0.00 3.32
3033 3746 3.171277 CCTTTTTCCGAATCGAATGTGC 58.829 45.455 3.36 0.00 0.00 4.57
3042 3755 4.652679 AGGGAGTAACCTTTTTCCGAAT 57.347 40.909 0.00 0.00 37.69 3.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.