Multiple sequence alignment - TraesCS4A01G217000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G217000 | chr4A | 100.000 | 2681 | 0 | 0 | 1 | 2681 | 516342042 | 516344722 | 0.000000e+00 | 4951.0 |
1 | TraesCS4A01G217000 | chr4A | 92.348 | 1738 | 88 | 20 | 712 | 2428 | 515750539 | 515748826 | 0.000000e+00 | 2431.0 |
2 | TraesCS4A01G217000 | chr4A | 91.843 | 331 | 24 | 2 | 15 | 342 | 515752358 | 515752028 | 2.430000e-125 | 459.0 |
3 | TraesCS4A01G217000 | chr4A | 91.275 | 149 | 13 | 0 | 573 | 721 | 515751992 | 515751844 | 1.260000e-48 | 204.0 |
4 | TraesCS4A01G217000 | chr4A | 86.842 | 152 | 20 | 0 | 2530 | 2681 | 515748736 | 515748585 | 1.280000e-38 | 171.0 |
5 | TraesCS4A01G217000 | chr4D | 91.150 | 1209 | 74 | 14 | 573 | 1754 | 66935769 | 66934567 | 0.000000e+00 | 1609.0 |
6 | TraesCS4A01G217000 | chr4D | 92.062 | 1096 | 54 | 13 | 674 | 1757 | 67238585 | 67239659 | 0.000000e+00 | 1511.0 |
7 | TraesCS4A01G217000 | chr4D | 86.900 | 229 | 20 | 5 | 362 | 582 | 96715853 | 96715627 | 5.730000e-62 | 248.0 |
8 | TraesCS4A01G217000 | chr4B | 88.108 | 1337 | 94 | 27 | 770 | 2067 | 99048680 | 99049990 | 0.000000e+00 | 1528.0 |
9 | TraesCS4A01G217000 | chr4B | 90.968 | 1085 | 81 | 13 | 612 | 1686 | 99040238 | 99041315 | 0.000000e+00 | 1445.0 |
10 | TraesCS4A01G217000 | chr4B | 89.755 | 937 | 67 | 17 | 851 | 1766 | 99077967 | 99078895 | 0.000000e+00 | 1171.0 |
11 | TraesCS4A01G217000 | chr4B | 87.963 | 324 | 25 | 6 | 1455 | 1766 | 99051859 | 99052180 | 1.170000e-98 | 370.0 |
12 | TraesCS4A01G217000 | chr4B | 85.816 | 282 | 26 | 6 | 1787 | 2067 | 99041560 | 99041828 | 1.210000e-73 | 287.0 |
13 | TraesCS4A01G217000 | chr4B | 87.168 | 226 | 19 | 6 | 362 | 579 | 516975456 | 516975679 | 5.730000e-62 | 248.0 |
14 | TraesCS4A01G217000 | chr4B | 90.000 | 90 | 8 | 1 | 584 | 673 | 99051404 | 99051492 | 6.070000e-22 | 115.0 |
15 | TraesCS4A01G217000 | chr1D | 90.256 | 195 | 17 | 1 | 361 | 555 | 64887444 | 64887636 | 1.230000e-63 | 254.0 |
16 | TraesCS4A01G217000 | chr2D | 87.330 | 221 | 20 | 4 | 360 | 574 | 347449508 | 347449726 | 2.060000e-61 | 246.0 |
17 | TraesCS4A01G217000 | chr3D | 87.215 | 219 | 20 | 4 | 362 | 574 | 2719882 | 2720098 | 2.670000e-60 | 243.0 |
18 | TraesCS4A01G217000 | chr2A | 86.937 | 222 | 21 | 5 | 360 | 575 | 333742409 | 333742190 | 2.670000e-60 | 243.0 |
19 | TraesCS4A01G217000 | chr6D | 86.878 | 221 | 21 | 4 | 360 | 574 | 3325790 | 3326008 | 9.590000e-60 | 241.0 |
20 | TraesCS4A01G217000 | chr6D | 86.878 | 221 | 21 | 4 | 360 | 574 | 3331666 | 3331884 | 9.590000e-60 | 241.0 |
21 | TraesCS4A01G217000 | chr6D | 86.878 | 221 | 21 | 4 | 360 | 574 | 3337546 | 3337764 | 9.590000e-60 | 241.0 |
22 | TraesCS4A01G217000 | chr3B | 90.541 | 74 | 7 | 0 | 280 | 353 | 785357217 | 785357290 | 6.110000e-17 | 99.0 |
23 | TraesCS4A01G217000 | chr7D | 94.737 | 57 | 1 | 2 | 280 | 336 | 593933627 | 593933681 | 1.320000e-13 | 87.9 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4A01G217000 | chr4A | 516342042 | 516344722 | 2680 | False | 4951.00 | 4951 | 100.000000 | 1 | 2681 | 1 | chr4A.!!$F1 | 2680 |
1 | TraesCS4A01G217000 | chr4A | 515748585 | 515752358 | 3773 | True | 816.25 | 2431 | 90.577000 | 15 | 2681 | 4 | chr4A.!!$R1 | 2666 |
2 | TraesCS4A01G217000 | chr4D | 66934567 | 66935769 | 1202 | True | 1609.00 | 1609 | 91.150000 | 573 | 1754 | 1 | chr4D.!!$R1 | 1181 |
3 | TraesCS4A01G217000 | chr4D | 67238585 | 67239659 | 1074 | False | 1511.00 | 1511 | 92.062000 | 674 | 1757 | 1 | chr4D.!!$F1 | 1083 |
4 | TraesCS4A01G217000 | chr4B | 99077967 | 99078895 | 928 | False | 1171.00 | 1171 | 89.755000 | 851 | 1766 | 1 | chr4B.!!$F1 | 915 |
5 | TraesCS4A01G217000 | chr4B | 99040238 | 99041828 | 1590 | False | 866.00 | 1445 | 88.392000 | 612 | 2067 | 2 | chr4B.!!$F3 | 1455 |
6 | TraesCS4A01G217000 | chr4B | 99048680 | 99052180 | 3500 | False | 671.00 | 1528 | 88.690333 | 584 | 2067 | 3 | chr4B.!!$F4 | 1483 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
564 | 568 | 0.099968 | GTACGCGCACACCTATGAGA | 59.9 | 55.0 | 5.73 | 0.0 | 0.0 | 3.27 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2169 | 6243 | 0.179 | GGAGACCGTGGATCAAGCAT | 59.821 | 55.0 | 0.0 | 0.0 | 0.0 | 3.79 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
68 | 69 | 7.307337 | CCACAAATAAAGAAAACACAAGGATGC | 60.307 | 37.037 | 0.00 | 0.00 | 0.00 | 3.91 |
129 | 130 | 1.209504 | ACAGGTGGGACCATAATCACG | 59.790 | 52.381 | 0.00 | 0.00 | 41.95 | 4.35 |
135 | 136 | 3.739300 | GTGGGACCATAATCACGAATACG | 59.261 | 47.826 | 0.00 | 0.00 | 45.75 | 3.06 |
167 | 168 | 5.411361 | ACGTATTTTGTGACTGTATGTGCAT | 59.589 | 36.000 | 0.00 | 0.00 | 0.00 | 3.96 |
186 | 187 | 4.142838 | TGCATGCTTGAATCGAGTTAAGTG | 60.143 | 41.667 | 20.33 | 10.44 | 0.00 | 3.16 |
191 | 192 | 5.862323 | TGCTTGAATCGAGTTAAGTGACTAC | 59.138 | 40.000 | 17.10 | 2.24 | 0.00 | 2.73 |
192 | 193 | 5.862323 | GCTTGAATCGAGTTAAGTGACTACA | 59.138 | 40.000 | 17.10 | 0.00 | 0.00 | 2.74 |
196 | 197 | 9.917129 | TTGAATCGAGTTAAGTGACTACAAATA | 57.083 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
249 | 250 | 3.741344 | ACATTGAGCACAAGTTCTACGAC | 59.259 | 43.478 | 2.37 | 0.00 | 39.46 | 4.34 |
251 | 252 | 3.728076 | TGAGCACAAGTTCTACGACTT | 57.272 | 42.857 | 0.00 | 0.00 | 40.37 | 3.01 |
260 | 261 | 3.705051 | AGTTCTACGACTTGGGGTGATA | 58.295 | 45.455 | 0.00 | 0.00 | 0.00 | 2.15 |
306 | 308 | 2.145397 | GGTTTCCCCCTCTGATTTCC | 57.855 | 55.000 | 0.00 | 0.00 | 0.00 | 3.13 |
342 | 346 | 1.961793 | AAACGAGCTACAAGCACCAA | 58.038 | 45.000 | 1.22 | 0.00 | 45.56 | 3.67 |
344 | 348 | 2.185004 | ACGAGCTACAAGCACCAATT | 57.815 | 45.000 | 1.22 | 0.00 | 45.56 | 2.32 |
345 | 349 | 2.076863 | ACGAGCTACAAGCACCAATTC | 58.923 | 47.619 | 1.22 | 0.00 | 45.56 | 2.17 |
346 | 350 | 2.289694 | ACGAGCTACAAGCACCAATTCT | 60.290 | 45.455 | 1.22 | 0.00 | 45.56 | 2.40 |
348 | 352 | 3.932710 | CGAGCTACAAGCACCAATTCTTA | 59.067 | 43.478 | 1.22 | 0.00 | 45.56 | 2.10 |
349 | 353 | 4.201724 | CGAGCTACAAGCACCAATTCTTAC | 60.202 | 45.833 | 1.22 | 0.00 | 45.56 | 2.34 |
350 | 354 | 3.684788 | AGCTACAAGCACCAATTCTTACG | 59.315 | 43.478 | 1.22 | 0.00 | 45.56 | 3.18 |
351 | 355 | 3.682858 | GCTACAAGCACCAATTCTTACGA | 59.317 | 43.478 | 0.00 | 0.00 | 41.89 | 3.43 |
352 | 356 | 4.435651 | GCTACAAGCACCAATTCTTACGAC | 60.436 | 45.833 | 0.00 | 0.00 | 41.89 | 4.34 |
353 | 357 | 3.740115 | ACAAGCACCAATTCTTACGACT | 58.260 | 40.909 | 0.00 | 0.00 | 0.00 | 4.18 |
354 | 358 | 3.746492 | ACAAGCACCAATTCTTACGACTC | 59.254 | 43.478 | 0.00 | 0.00 | 0.00 | 3.36 |
355 | 359 | 3.678056 | AGCACCAATTCTTACGACTCA | 57.322 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
356 | 360 | 3.589988 | AGCACCAATTCTTACGACTCAG | 58.410 | 45.455 | 0.00 | 0.00 | 0.00 | 3.35 |
357 | 361 | 2.094417 | GCACCAATTCTTACGACTCAGC | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 4.26 |
358 | 362 | 3.589988 | CACCAATTCTTACGACTCAGCT | 58.410 | 45.455 | 0.00 | 0.00 | 0.00 | 4.24 |
360 | 364 | 4.563184 | CACCAATTCTTACGACTCAGCTAC | 59.437 | 45.833 | 0.00 | 0.00 | 0.00 | 3.58 |
361 | 365 | 4.463186 | ACCAATTCTTACGACTCAGCTACT | 59.537 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
363 | 367 | 5.972382 | CCAATTCTTACGACTCAGCTACTAC | 59.028 | 44.000 | 0.00 | 0.00 | 0.00 | 2.73 |
364 | 368 | 6.183360 | CCAATTCTTACGACTCAGCTACTACT | 60.183 | 42.308 | 0.00 | 0.00 | 0.00 | 2.57 |
365 | 369 | 7.251994 | CAATTCTTACGACTCAGCTACTACTT | 58.748 | 38.462 | 0.00 | 0.00 | 0.00 | 2.24 |
367 | 371 | 4.874966 | TCTTACGACTCAGCTACTACTTCC | 59.125 | 45.833 | 0.00 | 0.00 | 0.00 | 3.46 |
368 | 372 | 3.353370 | ACGACTCAGCTACTACTTCCT | 57.647 | 47.619 | 0.00 | 0.00 | 0.00 | 3.36 |
371 | 375 | 3.622630 | GACTCAGCTACTACTTCCTCCA | 58.377 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
372 | 376 | 4.211920 | GACTCAGCTACTACTTCCTCCAT | 58.788 | 47.826 | 0.00 | 0.00 | 0.00 | 3.41 |
373 | 377 | 4.615513 | ACTCAGCTACTACTTCCTCCATT | 58.384 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
374 | 378 | 5.026790 | ACTCAGCTACTACTTCCTCCATTT | 58.973 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
375 | 379 | 5.128008 | ACTCAGCTACTACTTCCTCCATTTC | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 2.17 |
376 | 380 | 5.023452 | TCAGCTACTACTTCCTCCATTTCA | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 2.69 |
377 | 381 | 5.483937 | TCAGCTACTACTTCCTCCATTTCAA | 59.516 | 40.000 | 0.00 | 0.00 | 0.00 | 2.69 |
378 | 382 | 6.156949 | TCAGCTACTACTTCCTCCATTTCAAT | 59.843 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
379 | 383 | 6.825721 | CAGCTACTACTTCCTCCATTTCAATT | 59.174 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
380 | 384 | 7.337942 | CAGCTACTACTTCCTCCATTTCAATTT | 59.662 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
381 | 385 | 8.548877 | AGCTACTACTTCCTCCATTTCAATTTA | 58.451 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
382 | 386 | 8.613482 | GCTACTACTTCCTCCATTTCAATTTAC | 58.387 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
383 | 387 | 9.667107 | CTACTACTTCCTCCATTTCAATTTACA | 57.333 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
384 | 388 | 8.934023 | ACTACTTCCTCCATTTCAATTTACAA | 57.066 | 30.769 | 0.00 | 0.00 | 0.00 | 2.41 |
385 | 389 | 9.362151 | ACTACTTCCTCCATTTCAATTTACAAA | 57.638 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
388 | 392 | 8.314021 | ACTTCCTCCATTTCAATTTACAAATCC | 58.686 | 33.333 | 0.00 | 0.00 | 0.00 | 3.01 |
389 | 393 | 8.434589 | TTCCTCCATTTCAATTTACAAATCCT | 57.565 | 30.769 | 0.00 | 0.00 | 0.00 | 3.24 |
390 | 394 | 9.540538 | TTCCTCCATTTCAATTTACAAATCCTA | 57.459 | 29.630 | 0.00 | 0.00 | 0.00 | 2.94 |
391 | 395 | 8.966868 | TCCTCCATTTCAATTTACAAATCCTAC | 58.033 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
392 | 396 | 7.915397 | CCTCCATTTCAATTTACAAATCCTACG | 59.085 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
393 | 397 | 7.254852 | TCCATTTCAATTTACAAATCCTACGC | 58.745 | 34.615 | 0.00 | 0.00 | 0.00 | 4.42 |
394 | 398 | 6.196353 | CCATTTCAATTTACAAATCCTACGCG | 59.804 | 38.462 | 3.53 | 3.53 | 0.00 | 6.01 |
395 | 399 | 5.866335 | TTCAATTTACAAATCCTACGCGT | 57.134 | 34.783 | 19.17 | 19.17 | 0.00 | 6.01 |
396 | 400 | 6.964741 | TTCAATTTACAAATCCTACGCGTA | 57.035 | 33.333 | 19.40 | 19.40 | 0.00 | 4.42 |
397 | 401 | 7.542534 | TTCAATTTACAAATCCTACGCGTAT | 57.457 | 32.000 | 20.91 | 2.73 | 0.00 | 3.06 |
398 | 402 | 8.645730 | TTCAATTTACAAATCCTACGCGTATA | 57.354 | 30.769 | 20.91 | 11.64 | 0.00 | 1.47 |
399 | 403 | 8.821147 | TCAATTTACAAATCCTACGCGTATAT | 57.179 | 30.769 | 20.91 | 13.50 | 0.00 | 0.86 |
400 | 404 | 8.918658 | TCAATTTACAAATCCTACGCGTATATC | 58.081 | 33.333 | 20.91 | 0.00 | 0.00 | 1.63 |
401 | 405 | 8.922676 | CAATTTACAAATCCTACGCGTATATCT | 58.077 | 33.333 | 20.91 | 0.34 | 0.00 | 1.98 |
403 | 407 | 9.784680 | ATTTACAAATCCTACGCGTATATCTAG | 57.215 | 33.333 | 20.91 | 8.56 | 0.00 | 2.43 |
404 | 408 | 6.192234 | ACAAATCCTACGCGTATATCTAGG | 57.808 | 41.667 | 20.91 | 18.03 | 0.00 | 3.02 |
405 | 409 | 5.709164 | ACAAATCCTACGCGTATATCTAGGT | 59.291 | 40.000 | 20.91 | 10.15 | 0.00 | 3.08 |
406 | 410 | 6.208204 | ACAAATCCTACGCGTATATCTAGGTT | 59.792 | 38.462 | 20.91 | 10.22 | 0.00 | 3.50 |
407 | 411 | 5.814764 | ATCCTACGCGTATATCTAGGTTG | 57.185 | 43.478 | 20.91 | 3.59 | 0.00 | 3.77 |
408 | 412 | 4.645535 | TCCTACGCGTATATCTAGGTTGT | 58.354 | 43.478 | 20.91 | 0.00 | 0.00 | 3.32 |
409 | 413 | 4.692625 | TCCTACGCGTATATCTAGGTTGTC | 59.307 | 45.833 | 20.91 | 0.00 | 0.00 | 3.18 |
410 | 414 | 4.453478 | CCTACGCGTATATCTAGGTTGTCA | 59.547 | 45.833 | 20.91 | 0.00 | 0.00 | 3.58 |
411 | 415 | 4.906065 | ACGCGTATATCTAGGTTGTCAA | 57.094 | 40.909 | 11.67 | 0.00 | 0.00 | 3.18 |
412 | 416 | 5.449107 | ACGCGTATATCTAGGTTGTCAAT | 57.551 | 39.130 | 11.67 | 0.00 | 0.00 | 2.57 |
413 | 417 | 5.839621 | ACGCGTATATCTAGGTTGTCAATT | 58.160 | 37.500 | 11.67 | 0.00 | 0.00 | 2.32 |
414 | 418 | 6.278363 | ACGCGTATATCTAGGTTGTCAATTT | 58.722 | 36.000 | 11.67 | 0.00 | 0.00 | 1.82 |
415 | 419 | 6.759827 | ACGCGTATATCTAGGTTGTCAATTTT | 59.240 | 34.615 | 11.67 | 0.00 | 0.00 | 1.82 |
416 | 420 | 7.922278 | ACGCGTATATCTAGGTTGTCAATTTTA | 59.078 | 33.333 | 11.67 | 0.00 | 0.00 | 1.52 |
417 | 421 | 8.212495 | CGCGTATATCTAGGTTGTCAATTTTAC | 58.788 | 37.037 | 0.00 | 0.00 | 0.00 | 2.01 |
418 | 422 | 8.493547 | GCGTATATCTAGGTTGTCAATTTTACC | 58.506 | 37.037 | 0.00 | 0.00 | 0.00 | 2.85 |
419 | 423 | 9.537192 | CGTATATCTAGGTTGTCAATTTTACCA | 57.463 | 33.333 | 0.00 | 0.00 | 33.02 | 3.25 |
422 | 426 | 7.923414 | ATCTAGGTTGTCAATTTTACCACTC | 57.077 | 36.000 | 0.00 | 0.00 | 33.02 | 3.51 |
423 | 427 | 7.074653 | TCTAGGTTGTCAATTTTACCACTCT | 57.925 | 36.000 | 0.00 | 0.00 | 33.02 | 3.24 |
424 | 428 | 8.197592 | TCTAGGTTGTCAATTTTACCACTCTA | 57.802 | 34.615 | 0.00 | 0.00 | 33.02 | 2.43 |
425 | 429 | 8.653191 | TCTAGGTTGTCAATTTTACCACTCTAA | 58.347 | 33.333 | 0.00 | 0.00 | 33.02 | 2.10 |
426 | 430 | 9.449719 | CTAGGTTGTCAATTTTACCACTCTAAT | 57.550 | 33.333 | 0.00 | 0.00 | 33.02 | 1.73 |
428 | 432 | 9.975218 | AGGTTGTCAATTTTACCACTCTAATAT | 57.025 | 29.630 | 0.00 | 0.00 | 33.02 | 1.28 |
463 | 467 | 8.853469 | AACACAAAAATTATACGGTTCGAAAA | 57.147 | 26.923 | 0.00 | 0.00 | 0.00 | 2.29 |
464 | 468 | 9.465985 | AACACAAAAATTATACGGTTCGAAAAT | 57.534 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
550 | 554 | 7.920908 | ATAAATTAACGACTTAGAGGTACGC | 57.079 | 36.000 | 0.00 | 0.00 | 0.00 | 4.42 |
551 | 555 | 3.389687 | TTAACGACTTAGAGGTACGCG | 57.610 | 47.619 | 3.53 | 3.53 | 0.00 | 6.01 |
552 | 556 | 0.179179 | AACGACTTAGAGGTACGCGC | 60.179 | 55.000 | 5.73 | 0.00 | 0.00 | 6.86 |
553 | 557 | 1.300971 | ACGACTTAGAGGTACGCGCA | 61.301 | 55.000 | 5.73 | 0.00 | 0.00 | 6.09 |
554 | 558 | 0.860618 | CGACTTAGAGGTACGCGCAC | 60.861 | 60.000 | 5.73 | 2.26 | 0.00 | 5.34 |
555 | 559 | 0.169672 | GACTTAGAGGTACGCGCACA | 59.830 | 55.000 | 12.27 | 0.00 | 0.00 | 4.57 |
556 | 560 | 0.109412 | ACTTAGAGGTACGCGCACAC | 60.109 | 55.000 | 12.27 | 3.64 | 0.00 | 3.82 |
557 | 561 | 0.801067 | CTTAGAGGTACGCGCACACC | 60.801 | 60.000 | 17.49 | 17.49 | 34.86 | 4.16 |
559 | 563 | 0.392863 | TAGAGGTACGCGCACACCTA | 60.393 | 55.000 | 25.30 | 14.50 | 45.32 | 3.08 |
560 | 564 | 1.035932 | AGAGGTACGCGCACACCTAT | 61.036 | 55.000 | 25.30 | 20.94 | 45.32 | 2.57 |
561 | 565 | 0.870307 | GAGGTACGCGCACACCTATG | 60.870 | 60.000 | 25.30 | 1.54 | 45.32 | 2.23 |
562 | 566 | 1.140161 | GGTACGCGCACACCTATGA | 59.860 | 57.895 | 17.82 | 0.00 | 0.00 | 2.15 |
563 | 567 | 0.870307 | GGTACGCGCACACCTATGAG | 60.870 | 60.000 | 17.82 | 0.00 | 0.00 | 2.90 |
564 | 568 | 0.099968 | GTACGCGCACACCTATGAGA | 59.900 | 55.000 | 5.73 | 0.00 | 0.00 | 3.27 |
565 | 569 | 0.380733 | TACGCGCACACCTATGAGAG | 59.619 | 55.000 | 5.73 | 0.00 | 0.00 | 3.20 |
568 | 572 | 0.249238 | GCGCACACCTATGAGAGAGG | 60.249 | 60.000 | 0.30 | 0.00 | 40.22 | 3.69 |
569 | 573 | 0.387202 | CGCACACCTATGAGAGAGGG | 59.613 | 60.000 | 0.00 | 0.00 | 38.52 | 4.30 |
571 | 575 | 1.686052 | GCACACCTATGAGAGAGGGAG | 59.314 | 57.143 | 0.00 | 0.00 | 38.52 | 4.30 |
577 | 581 | 5.613544 | ACACCTATGAGAGAGGGAGTACTAT | 59.386 | 44.000 | 0.00 | 0.00 | 38.52 | 2.12 |
588 | 592 | 4.808042 | AGGGAGTACTATTAAACCGCCTA | 58.192 | 43.478 | 0.00 | 0.00 | 0.00 | 3.93 |
651 | 655 | 2.903855 | CGCTGGCCATGATCACCC | 60.904 | 66.667 | 5.51 | 0.00 | 0.00 | 4.61 |
748 | 2100 | 4.560035 | CCTAAACCGTCAACTGTATGTACG | 59.440 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
750 | 2102 | 4.764679 | AACCGTCAACTGTATGTACGTA | 57.235 | 40.909 | 0.00 | 0.00 | 31.87 | 3.57 |
966 | 2356 | 3.175324 | CGTCGTTTTAGACATCGATCGAC | 59.825 | 47.826 | 22.06 | 17.20 | 40.98 | 4.20 |
971 | 2361 | 2.750301 | TAGACATCGATCGACAACGG | 57.250 | 50.000 | 22.06 | 10.18 | 40.21 | 4.44 |
1012 | 2402 | 3.224324 | CATGCATGGCAGCCCTCC | 61.224 | 66.667 | 19.40 | 0.00 | 43.65 | 4.30 |
1024 | 2414 | 2.584608 | CCCTCCACACGATCCACC | 59.415 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1319 | 2730 | 4.675029 | CGAGAACCCCAACCGCGT | 62.675 | 66.667 | 4.92 | 0.00 | 0.00 | 6.01 |
1688 | 5558 | 2.169769 | TGAAGTTATGGTGATCCGGACC | 59.830 | 50.000 | 6.12 | 4.73 | 36.30 | 4.46 |
1715 | 5601 | 2.126467 | TGCCGTTAAACGACACACTAC | 58.874 | 47.619 | 0.00 | 0.00 | 46.05 | 2.73 |
1722 | 5772 | 6.362686 | CGTTAAACGACACACTACTACTGTA | 58.637 | 40.000 | 0.00 | 0.00 | 46.05 | 2.74 |
1723 | 5773 | 7.017645 | CGTTAAACGACACACTACTACTGTAT | 58.982 | 38.462 | 0.00 | 0.00 | 46.05 | 2.29 |
1972 | 6034 | 3.386402 | GTCAATCGATTCTTCCTCCTCCT | 59.614 | 47.826 | 7.92 | 0.00 | 0.00 | 3.69 |
2001 | 6063 | 6.264970 | TCAACAGTCAAATGTCAATCCAATGA | 59.735 | 34.615 | 0.00 | 0.00 | 31.50 | 2.57 |
2086 | 6148 | 1.557371 | CCACCTTCTTCCTTCTCCCTC | 59.443 | 57.143 | 0.00 | 0.00 | 0.00 | 4.30 |
2126 | 6188 | 2.790791 | CCCTGCGTTGGCCAAACAA | 61.791 | 57.895 | 22.47 | 7.43 | 38.84 | 2.83 |
2132 | 6194 | 1.496934 | CGTTGGCCAAACAATTGTCC | 58.503 | 50.000 | 22.47 | 9.28 | 38.84 | 4.02 |
2134 | 6196 | 1.115467 | TTGGCCAAACAATTGTCCGT | 58.885 | 45.000 | 17.98 | 0.00 | 37.38 | 4.69 |
2141 | 6203 | 1.398692 | AACAATTGTCCGTTGCCACT | 58.601 | 45.000 | 12.39 | 0.00 | 0.00 | 4.00 |
2146 | 6208 | 0.393132 | TTGTCCGTTGCCACTCACAA | 60.393 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
2148 | 6210 | 1.525077 | TCCGTTGCCACTCACAACC | 60.525 | 57.895 | 0.00 | 0.00 | 43.57 | 3.77 |
2151 | 6213 | 1.525077 | GTTGCCACTCACAACCGGA | 60.525 | 57.895 | 9.46 | 0.00 | 41.22 | 5.14 |
2154 | 6216 | 2.738521 | CCACTCACAACCGGAGCG | 60.739 | 66.667 | 9.46 | 0.00 | 35.79 | 5.03 |
2155 | 6217 | 3.414700 | CACTCACAACCGGAGCGC | 61.415 | 66.667 | 9.46 | 0.00 | 35.79 | 5.92 |
2174 | 6248 | 2.203669 | TGCCACCTTGCCATGCTT | 60.204 | 55.556 | 0.00 | 0.00 | 0.00 | 3.91 |
2181 | 6255 | 0.458669 | CCTTGCCATGCTTGATCCAC | 59.541 | 55.000 | 0.22 | 0.00 | 0.00 | 4.02 |
2182 | 6256 | 0.099968 | CTTGCCATGCTTGATCCACG | 59.900 | 55.000 | 0.22 | 0.00 | 0.00 | 4.94 |
2184 | 6258 | 1.750399 | GCCATGCTTGATCCACGGT | 60.750 | 57.895 | 0.22 | 0.00 | 0.00 | 4.83 |
2199 | 6273 | 2.501610 | GGTCTCCGTCATGCCTCC | 59.498 | 66.667 | 0.00 | 0.00 | 0.00 | 4.30 |
2219 | 6293 | 1.377725 | CCGCACTCAGCCATCCTTT | 60.378 | 57.895 | 0.00 | 0.00 | 41.38 | 3.11 |
2230 | 6304 | 2.831526 | AGCCATCCTTTTAAAACCGCAT | 59.168 | 40.909 | 0.00 | 0.00 | 0.00 | 4.73 |
2232 | 6306 | 3.367910 | GCCATCCTTTTAAAACCGCATGA | 60.368 | 43.478 | 0.00 | 0.00 | 0.00 | 3.07 |
2258 | 6332 | 2.832733 | ACTAGAGGGACAAGCAACCTAC | 59.167 | 50.000 | 0.00 | 0.00 | 34.02 | 3.18 |
2261 | 6335 | 0.693049 | AGGGACAAGCAACCTACCAG | 59.307 | 55.000 | 0.00 | 0.00 | 31.53 | 4.00 |
2262 | 6336 | 0.400594 | GGGACAAGCAACCTACCAGT | 59.599 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2264 | 6338 | 1.071699 | GGACAAGCAACCTACCAGTGA | 59.928 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2305 | 6383 | 0.393808 | GATAGAAGGGGGCGCAACAA | 60.394 | 55.000 | 10.83 | 0.00 | 0.00 | 2.83 |
2307 | 6385 | 4.056125 | GAAGGGGGCGCAACAAGC | 62.056 | 66.667 | 10.83 | 0.00 | 40.87 | 4.01 |
2325 | 6403 | 2.680352 | GGGGAGAGTGCTCGACCA | 60.680 | 66.667 | 15.64 | 0.00 | 42.25 | 4.02 |
2332 | 6410 | 3.311110 | GTGCTCGACCAGGTGGGA | 61.311 | 66.667 | 0.00 | 0.00 | 41.15 | 4.37 |
2333 | 6411 | 2.525629 | TGCTCGACCAGGTGGGAA | 60.526 | 61.111 | 0.00 | 0.00 | 41.15 | 3.97 |
2334 | 6412 | 2.144078 | TGCTCGACCAGGTGGGAAA | 61.144 | 57.895 | 0.00 | 0.00 | 41.15 | 3.13 |
2340 | 6418 | 0.036875 | GACCAGGTGGGAAAGGTCTG | 59.963 | 60.000 | 0.00 | 0.00 | 45.46 | 3.51 |
2347 | 6425 | 2.355818 | GGTGGGAAAGGTCTGTGTATCC | 60.356 | 54.545 | 0.00 | 0.00 | 0.00 | 2.59 |
2352 | 6430 | 3.118592 | GGAAAGGTCTGTGTATCCTCCTG | 60.119 | 52.174 | 0.00 | 0.00 | 0.00 | 3.86 |
2353 | 6431 | 1.490574 | AGGTCTGTGTATCCTCCTGC | 58.509 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
2358 | 6436 | 2.012673 | CTGTGTATCCTCCTGCTTTGC | 58.987 | 52.381 | 0.00 | 0.00 | 0.00 | 3.68 |
2413 | 6491 | 4.326255 | CCTGCTAGGGTTGCCTTG | 57.674 | 61.111 | 0.00 | 0.00 | 0.00 | 3.61 |
2435 | 6513 | 2.672996 | CCAAACAGGGGGCTCGTG | 60.673 | 66.667 | 5.34 | 5.34 | 37.29 | 4.35 |
2436 | 6514 | 3.365265 | CAAACAGGGGGCTCGTGC | 61.365 | 66.667 | 7.04 | 0.00 | 34.84 | 5.34 |
2446 | 6524 | 3.300013 | GCTCGTGCCCCTAGAGTT | 58.700 | 61.111 | 0.00 | 0.00 | 34.69 | 3.01 |
2447 | 6525 | 1.153549 | GCTCGTGCCCCTAGAGTTG | 60.154 | 63.158 | 0.00 | 0.00 | 34.69 | 3.16 |
2448 | 6526 | 1.153549 | CTCGTGCCCCTAGAGTTGC | 60.154 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
2449 | 6527 | 2.125106 | CGTGCCCCTAGAGTTGCC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.52 |
2450 | 6528 | 2.660064 | CGTGCCCCTAGAGTTGCCT | 61.660 | 63.158 | 0.00 | 0.00 | 0.00 | 4.75 |
2451 | 6529 | 1.685820 | GTGCCCCTAGAGTTGCCTT | 59.314 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
2452 | 6530 | 0.678048 | GTGCCCCTAGAGTTGCCTTG | 60.678 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
2453 | 6531 | 1.750780 | GCCCCTAGAGTTGCCTTGC | 60.751 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
2454 | 6532 | 1.077429 | CCCCTAGAGTTGCCTTGCC | 60.077 | 63.158 | 0.00 | 0.00 | 0.00 | 4.52 |
2455 | 6533 | 1.077429 | CCCTAGAGTTGCCTTGCCC | 60.077 | 63.158 | 0.00 | 0.00 | 0.00 | 5.36 |
2456 | 6534 | 1.685224 | CCTAGAGTTGCCTTGCCCA | 59.315 | 57.895 | 0.00 | 0.00 | 0.00 | 5.36 |
2457 | 6535 | 0.257039 | CCTAGAGTTGCCTTGCCCAT | 59.743 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2458 | 6536 | 1.490490 | CCTAGAGTTGCCTTGCCCATA | 59.510 | 52.381 | 0.00 | 0.00 | 0.00 | 2.74 |
2459 | 6537 | 2.107204 | CCTAGAGTTGCCTTGCCCATAT | 59.893 | 50.000 | 0.00 | 0.00 | 0.00 | 1.78 |
2460 | 6538 | 2.062971 | AGAGTTGCCTTGCCCATATG | 57.937 | 50.000 | 0.00 | 0.00 | 0.00 | 1.78 |
2461 | 6539 | 0.386838 | GAGTTGCCTTGCCCATATGC | 59.613 | 55.000 | 0.00 | 0.00 | 0.00 | 3.14 |
2462 | 6540 | 0.324552 | AGTTGCCTTGCCCATATGCA | 60.325 | 50.000 | 0.00 | 0.00 | 40.07 | 3.96 |
2463 | 6541 | 0.754472 | GTTGCCTTGCCCATATGCAT | 59.246 | 50.000 | 3.79 | 3.79 | 41.70 | 3.96 |
2464 | 6542 | 0.753867 | TTGCCTTGCCCATATGCATG | 59.246 | 50.000 | 10.16 | 0.00 | 41.70 | 4.06 |
2465 | 6543 | 0.397394 | TGCCTTGCCCATATGCATGT | 60.397 | 50.000 | 10.16 | 0.00 | 41.70 | 3.21 |
2466 | 6544 | 0.032952 | GCCTTGCCCATATGCATGTG | 59.967 | 55.000 | 15.95 | 15.95 | 41.70 | 3.21 |
2467 | 6545 | 0.677288 | CCTTGCCCATATGCATGTGG | 59.323 | 55.000 | 30.11 | 30.11 | 41.70 | 4.17 |
2468 | 6546 | 1.405872 | CTTGCCCATATGCATGTGGT | 58.594 | 50.000 | 32.81 | 1.64 | 41.70 | 4.16 |
2469 | 6547 | 1.067974 | CTTGCCCATATGCATGTGGTG | 59.932 | 52.381 | 32.81 | 25.84 | 41.70 | 4.17 |
2484 | 6562 | 4.218686 | GTGCACCCCACCCCAACT | 62.219 | 66.667 | 5.22 | 0.00 | 38.55 | 3.16 |
2485 | 6563 | 3.897122 | TGCACCCCACCCCAACTC | 61.897 | 66.667 | 0.00 | 0.00 | 0.00 | 3.01 |
2486 | 6564 | 3.897122 | GCACCCCACCCCAACTCA | 61.897 | 66.667 | 0.00 | 0.00 | 0.00 | 3.41 |
2487 | 6565 | 2.931107 | CACCCCACCCCAACTCAA | 59.069 | 61.111 | 0.00 | 0.00 | 0.00 | 3.02 |
2490 | 6568 | 1.378514 | CCCCACCCCAACTCAATCG | 60.379 | 63.158 | 0.00 | 0.00 | 0.00 | 3.34 |
2495 | 6573 | 0.988832 | ACCCCAACTCAATCGCCTTA | 59.011 | 50.000 | 0.00 | 0.00 | 0.00 | 2.69 |
2508 | 6586 | 1.682344 | GCCTTACCCCCAAGCAAGG | 60.682 | 63.158 | 0.00 | 0.00 | 40.48 | 3.61 |
2517 | 6595 | 2.132996 | CCAAGCAAGGTTGGGTGCA | 61.133 | 57.895 | 20.37 | 0.00 | 43.02 | 4.57 |
2521 | 6599 | 1.607467 | GCAAGGTTGGGTGCATCCT | 60.607 | 57.895 | 18.94 | 4.63 | 40.58 | 3.24 |
2522 | 6600 | 1.598701 | GCAAGGTTGGGTGCATCCTC | 61.599 | 60.000 | 18.94 | 10.30 | 40.58 | 3.71 |
2523 | 6601 | 1.002134 | AAGGTTGGGTGCATCCTCG | 60.002 | 57.895 | 18.94 | 0.00 | 36.25 | 4.63 |
2524 | 6602 | 1.488705 | AAGGTTGGGTGCATCCTCGA | 61.489 | 55.000 | 18.94 | 0.00 | 36.25 | 4.04 |
2525 | 6603 | 1.224592 | GGTTGGGTGCATCCTCGAT | 59.775 | 57.895 | 18.94 | 0.00 | 36.25 | 3.59 |
2528 | 6654 | 0.982852 | TTGGGTGCATCCTCGATCCT | 60.983 | 55.000 | 18.94 | 0.00 | 36.25 | 3.24 |
2536 | 6662 | 3.258372 | TGCATCCTCGATCCTTACATACC | 59.742 | 47.826 | 0.00 | 0.00 | 0.00 | 2.73 |
2537 | 6663 | 3.258372 | GCATCCTCGATCCTTACATACCA | 59.742 | 47.826 | 0.00 | 0.00 | 0.00 | 3.25 |
2538 | 6664 | 4.262463 | GCATCCTCGATCCTTACATACCAA | 60.262 | 45.833 | 0.00 | 0.00 | 0.00 | 3.67 |
2560 | 6686 | 7.037873 | ACCAAAACACTCCATGGTATAACTAGA | 60.038 | 37.037 | 12.58 | 0.00 | 44.11 | 2.43 |
2567 | 6693 | 3.838903 | CCATGGTATAACTAGACCCTCCC | 59.161 | 52.174 | 2.57 | 0.00 | 36.76 | 4.30 |
2569 | 6695 | 4.845530 | TGGTATAACTAGACCCTCCCAT | 57.154 | 45.455 | 0.00 | 0.00 | 36.76 | 4.00 |
2578 | 6704 | 6.997942 | ACTAGACCCTCCCATAATACTTTC | 57.002 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
2609 | 6735 | 3.336138 | GAAAGACATTCGGAACCCTCT | 57.664 | 47.619 | 0.00 | 0.00 | 0.00 | 3.69 |
2613 | 6739 | 2.104170 | GACATTCGGAACCCTCTCTCT | 58.896 | 52.381 | 0.00 | 0.00 | 0.00 | 3.10 |
2619 | 6745 | 1.410882 | CGGAACCCTCTCTCTCATTCC | 59.589 | 57.143 | 0.00 | 0.00 | 33.67 | 3.01 |
2622 | 6748 | 0.719015 | ACCCTCTCTCTCATTCCCCA | 59.281 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2640 | 6766 | 6.078456 | TCCCCATTATCTCATGTTTCAAGT | 57.922 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
2642 | 6768 | 6.603201 | TCCCCATTATCTCATGTTTCAAGTTC | 59.397 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
2644 | 6770 | 6.458751 | CCCATTATCTCATGTTTCAAGTTCGG | 60.459 | 42.308 | 0.00 | 0.00 | 0.00 | 4.30 |
2645 | 6771 | 5.545658 | TTATCTCATGTTTCAAGTTCGGC | 57.454 | 39.130 | 0.00 | 0.00 | 0.00 | 5.54 |
2674 | 6800 | 1.975680 | ACCATGTACGGAACACCTTCT | 59.024 | 47.619 | 0.00 | 0.00 | 42.09 | 2.85 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
15 | 16 | 2.014128 | CAGACCACCGTCACACTTTTT | 58.986 | 47.619 | 0.00 | 0.00 | 41.87 | 1.94 |
16 | 17 | 1.663695 | CAGACCACCGTCACACTTTT | 58.336 | 50.000 | 0.00 | 0.00 | 41.87 | 2.27 |
17 | 18 | 0.814010 | GCAGACCACCGTCACACTTT | 60.814 | 55.000 | 0.00 | 0.00 | 41.87 | 2.66 |
18 | 19 | 1.227556 | GCAGACCACCGTCACACTT | 60.228 | 57.895 | 0.00 | 0.00 | 41.87 | 3.16 |
19 | 20 | 1.686325 | AAGCAGACCACCGTCACACT | 61.686 | 55.000 | 0.00 | 0.00 | 41.87 | 3.55 |
25 | 26 | 0.106918 | TGGAAAAAGCAGACCACCGT | 60.107 | 50.000 | 0.00 | 0.00 | 0.00 | 4.83 |
68 | 69 | 2.533942 | GCCGGCGTATTTTTGCATAAAG | 59.466 | 45.455 | 12.58 | 0.00 | 0.00 | 1.85 |
73 | 74 | 1.131504 | CTTAGCCGGCGTATTTTTGCA | 59.868 | 47.619 | 23.20 | 0.00 | 0.00 | 4.08 |
100 | 101 | 1.629043 | GTCCCACCTGTCAGTGACTA | 58.371 | 55.000 | 23.29 | 9.59 | 40.34 | 2.59 |
135 | 136 | 5.924825 | ACAGTCACAAAATACGTAAGAGGAC | 59.075 | 40.000 | 0.00 | 3.58 | 43.62 | 3.85 |
143 | 144 | 4.752604 | TGCACATACAGTCACAAAATACGT | 59.247 | 37.500 | 0.00 | 0.00 | 0.00 | 3.57 |
154 | 155 | 4.595116 | GATTCAAGCATGCACATACAGTC | 58.405 | 43.478 | 21.98 | 3.68 | 0.00 | 3.51 |
167 | 168 | 4.883083 | AGTCACTTAACTCGATTCAAGCA | 58.117 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
209 | 210 | 7.798982 | GCTCAATGTTCAGTTTAGTGTTAGAAC | 59.201 | 37.037 | 0.00 | 0.00 | 36.73 | 3.01 |
216 | 217 | 5.422666 | TGTGCTCAATGTTCAGTTTAGTG | 57.577 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
223 | 224 | 4.825546 | AGAACTTGTGCTCAATGTTCAG | 57.174 | 40.909 | 26.75 | 11.54 | 40.19 | 3.02 |
306 | 308 | 6.033966 | GCTCGTTTATTGGTTTCCCTTAATG | 58.966 | 40.000 | 0.00 | 0.00 | 0.00 | 1.90 |
325 | 327 | 2.076863 | GAATTGGTGCTTGTAGCTCGT | 58.923 | 47.619 | 0.00 | 0.00 | 42.97 | 4.18 |
345 | 349 | 4.877251 | AGGAAGTAGTAGCTGAGTCGTAAG | 59.123 | 45.833 | 0.00 | 0.00 | 0.00 | 2.34 |
346 | 350 | 4.841422 | AGGAAGTAGTAGCTGAGTCGTAA | 58.159 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
348 | 352 | 3.272581 | GAGGAAGTAGTAGCTGAGTCGT | 58.727 | 50.000 | 0.00 | 0.00 | 0.00 | 4.34 |
349 | 353 | 2.614983 | GGAGGAAGTAGTAGCTGAGTCG | 59.385 | 54.545 | 0.00 | 0.00 | 0.00 | 4.18 |
350 | 354 | 3.622630 | TGGAGGAAGTAGTAGCTGAGTC | 58.377 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
351 | 355 | 3.741245 | TGGAGGAAGTAGTAGCTGAGT | 57.259 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
352 | 356 | 5.127845 | TGAAATGGAGGAAGTAGTAGCTGAG | 59.872 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
353 | 357 | 5.023452 | TGAAATGGAGGAAGTAGTAGCTGA | 58.977 | 41.667 | 0.00 | 0.00 | 0.00 | 4.26 |
354 | 358 | 5.344743 | TGAAATGGAGGAAGTAGTAGCTG | 57.655 | 43.478 | 0.00 | 0.00 | 0.00 | 4.24 |
355 | 359 | 6.567602 | ATTGAAATGGAGGAAGTAGTAGCT | 57.432 | 37.500 | 0.00 | 0.00 | 0.00 | 3.32 |
356 | 360 | 7.631717 | AAATTGAAATGGAGGAAGTAGTAGC | 57.368 | 36.000 | 0.00 | 0.00 | 0.00 | 3.58 |
357 | 361 | 9.667107 | TGTAAATTGAAATGGAGGAAGTAGTAG | 57.333 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
363 | 367 | 8.534496 | AGGATTTGTAAATTGAAATGGAGGAAG | 58.466 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
364 | 368 | 8.434589 | AGGATTTGTAAATTGAAATGGAGGAA | 57.565 | 30.769 | 0.00 | 0.00 | 0.00 | 3.36 |
365 | 369 | 8.966868 | GTAGGATTTGTAAATTGAAATGGAGGA | 58.033 | 33.333 | 0.00 | 0.00 | 0.00 | 3.71 |
367 | 371 | 7.432252 | GCGTAGGATTTGTAAATTGAAATGGAG | 59.568 | 37.037 | 0.00 | 0.00 | 0.00 | 3.86 |
368 | 372 | 7.254852 | GCGTAGGATTTGTAAATTGAAATGGA | 58.745 | 34.615 | 0.00 | 0.00 | 0.00 | 3.41 |
371 | 375 | 6.848451 | ACGCGTAGGATTTGTAAATTGAAAT | 58.152 | 32.000 | 11.67 | 0.00 | 0.00 | 2.17 |
372 | 376 | 6.243811 | ACGCGTAGGATTTGTAAATTGAAA | 57.756 | 33.333 | 11.67 | 0.00 | 0.00 | 2.69 |
373 | 377 | 5.866335 | ACGCGTAGGATTTGTAAATTGAA | 57.134 | 34.783 | 11.67 | 0.00 | 0.00 | 2.69 |
374 | 378 | 8.821147 | ATATACGCGTAGGATTTGTAAATTGA | 57.179 | 30.769 | 24.78 | 0.00 | 0.00 | 2.57 |
375 | 379 | 8.922676 | AGATATACGCGTAGGATTTGTAAATTG | 58.077 | 33.333 | 24.78 | 0.00 | 0.00 | 2.32 |
377 | 381 | 9.784680 | CTAGATATACGCGTAGGATTTGTAAAT | 57.215 | 33.333 | 24.78 | 6.54 | 0.00 | 1.40 |
378 | 382 | 8.239314 | CCTAGATATACGCGTAGGATTTGTAAA | 58.761 | 37.037 | 24.78 | 0.00 | 34.99 | 2.01 |
379 | 383 | 7.391554 | ACCTAGATATACGCGTAGGATTTGTAA | 59.608 | 37.037 | 25.95 | 1.90 | 36.34 | 2.41 |
380 | 384 | 6.881065 | ACCTAGATATACGCGTAGGATTTGTA | 59.119 | 38.462 | 25.95 | 12.32 | 36.34 | 2.41 |
381 | 385 | 5.709164 | ACCTAGATATACGCGTAGGATTTGT | 59.291 | 40.000 | 25.95 | 14.24 | 36.34 | 2.83 |
382 | 386 | 6.192234 | ACCTAGATATACGCGTAGGATTTG | 57.808 | 41.667 | 25.95 | 14.10 | 36.34 | 2.32 |
383 | 387 | 6.208204 | ACAACCTAGATATACGCGTAGGATTT | 59.792 | 38.462 | 25.95 | 17.70 | 36.34 | 2.17 |
384 | 388 | 5.709164 | ACAACCTAGATATACGCGTAGGATT | 59.291 | 40.000 | 25.95 | 12.28 | 36.34 | 3.01 |
385 | 389 | 5.251764 | ACAACCTAGATATACGCGTAGGAT | 58.748 | 41.667 | 25.95 | 20.20 | 36.34 | 3.24 |
386 | 390 | 4.645535 | ACAACCTAGATATACGCGTAGGA | 58.354 | 43.478 | 25.95 | 16.64 | 36.34 | 2.94 |
387 | 391 | 4.453478 | TGACAACCTAGATATACGCGTAGG | 59.547 | 45.833 | 24.78 | 21.85 | 38.45 | 3.18 |
388 | 392 | 5.602458 | TGACAACCTAGATATACGCGTAG | 57.398 | 43.478 | 24.78 | 11.28 | 0.00 | 3.51 |
389 | 393 | 6.564709 | ATTGACAACCTAGATATACGCGTA | 57.435 | 37.500 | 22.94 | 22.94 | 0.00 | 4.42 |
390 | 394 | 4.906065 | TTGACAACCTAGATATACGCGT | 57.094 | 40.909 | 19.17 | 19.17 | 0.00 | 6.01 |
391 | 395 | 6.764877 | AAATTGACAACCTAGATATACGCG | 57.235 | 37.500 | 3.53 | 3.53 | 0.00 | 6.01 |
392 | 396 | 8.493547 | GGTAAAATTGACAACCTAGATATACGC | 58.506 | 37.037 | 0.00 | 0.00 | 0.00 | 4.42 |
393 | 397 | 9.537192 | TGGTAAAATTGACAACCTAGATATACG | 57.463 | 33.333 | 0.00 | 0.00 | 32.99 | 3.06 |
396 | 400 | 9.614792 | GAGTGGTAAAATTGACAACCTAGATAT | 57.385 | 33.333 | 0.00 | 0.00 | 32.99 | 1.63 |
397 | 401 | 8.822805 | AGAGTGGTAAAATTGACAACCTAGATA | 58.177 | 33.333 | 0.00 | 0.00 | 32.99 | 1.98 |
398 | 402 | 7.690256 | AGAGTGGTAAAATTGACAACCTAGAT | 58.310 | 34.615 | 0.00 | 0.00 | 32.99 | 1.98 |
399 | 403 | 7.074653 | AGAGTGGTAAAATTGACAACCTAGA | 57.925 | 36.000 | 0.00 | 0.00 | 32.99 | 2.43 |
400 | 404 | 8.842358 | TTAGAGTGGTAAAATTGACAACCTAG | 57.158 | 34.615 | 0.00 | 0.00 | 32.99 | 3.02 |
402 | 406 | 9.975218 | ATATTAGAGTGGTAAAATTGACAACCT | 57.025 | 29.630 | 0.00 | 0.00 | 32.99 | 3.50 |
437 | 441 | 9.941664 | TTTTCGAACCGTATAATTTTTGTGTTA | 57.058 | 25.926 | 0.00 | 0.00 | 0.00 | 2.41 |
438 | 442 | 8.853469 | TTTTCGAACCGTATAATTTTTGTGTT | 57.147 | 26.923 | 0.00 | 0.00 | 0.00 | 3.32 |
448 | 452 | 9.976255 | CAAATGTTCTATTTTCGAACCGTATAA | 57.024 | 29.630 | 0.00 | 0.00 | 39.92 | 0.98 |
449 | 453 | 9.368674 | TCAAATGTTCTATTTTCGAACCGTATA | 57.631 | 29.630 | 0.00 | 0.00 | 39.92 | 1.47 |
450 | 454 | 8.259049 | TCAAATGTTCTATTTTCGAACCGTAT | 57.741 | 30.769 | 0.00 | 0.00 | 39.92 | 3.06 |
451 | 455 | 7.655236 | TCAAATGTTCTATTTTCGAACCGTA | 57.345 | 32.000 | 0.00 | 0.00 | 39.92 | 4.02 |
452 | 456 | 6.548441 | TCAAATGTTCTATTTTCGAACCGT | 57.452 | 33.333 | 0.00 | 0.00 | 39.92 | 4.83 |
453 | 457 | 7.075741 | ACTTCAAATGTTCTATTTTCGAACCG | 58.924 | 34.615 | 0.00 | 0.00 | 39.92 | 4.44 |
454 | 458 | 8.797266 | AACTTCAAATGTTCTATTTTCGAACC | 57.203 | 30.769 | 0.00 | 0.00 | 39.92 | 3.62 |
524 | 528 | 9.450807 | GCGTACCTCTAAGTCGTTAATTTATAA | 57.549 | 33.333 | 0.00 | 0.00 | 0.00 | 0.98 |
525 | 529 | 7.798516 | CGCGTACCTCTAAGTCGTTAATTTATA | 59.201 | 37.037 | 0.00 | 0.00 | 0.00 | 0.98 |
526 | 530 | 6.634436 | CGCGTACCTCTAAGTCGTTAATTTAT | 59.366 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
527 | 531 | 5.965334 | CGCGTACCTCTAAGTCGTTAATTTA | 59.035 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
528 | 532 | 4.795278 | CGCGTACCTCTAAGTCGTTAATTT | 59.205 | 41.667 | 0.00 | 0.00 | 0.00 | 1.82 |
529 | 533 | 4.346129 | CGCGTACCTCTAAGTCGTTAATT | 58.654 | 43.478 | 0.00 | 0.00 | 0.00 | 1.40 |
530 | 534 | 3.790123 | GCGCGTACCTCTAAGTCGTTAAT | 60.790 | 47.826 | 8.43 | 0.00 | 0.00 | 1.40 |
531 | 535 | 2.476185 | GCGCGTACCTCTAAGTCGTTAA | 60.476 | 50.000 | 8.43 | 0.00 | 0.00 | 2.01 |
532 | 536 | 1.062587 | GCGCGTACCTCTAAGTCGTTA | 59.937 | 52.381 | 8.43 | 0.00 | 0.00 | 3.18 |
533 | 537 | 0.179179 | GCGCGTACCTCTAAGTCGTT | 60.179 | 55.000 | 8.43 | 0.00 | 0.00 | 3.85 |
534 | 538 | 1.300971 | TGCGCGTACCTCTAAGTCGT | 61.301 | 55.000 | 8.43 | 0.00 | 0.00 | 4.34 |
535 | 539 | 0.860618 | GTGCGCGTACCTCTAAGTCG | 60.861 | 60.000 | 17.10 | 0.00 | 0.00 | 4.18 |
536 | 540 | 0.169672 | TGTGCGCGTACCTCTAAGTC | 59.830 | 55.000 | 24.54 | 0.00 | 0.00 | 3.01 |
537 | 541 | 0.109412 | GTGTGCGCGTACCTCTAAGT | 60.109 | 55.000 | 24.54 | 0.00 | 0.00 | 2.24 |
538 | 542 | 0.801067 | GGTGTGCGCGTACCTCTAAG | 60.801 | 60.000 | 24.54 | 0.00 | 34.11 | 2.18 |
539 | 543 | 1.213537 | GGTGTGCGCGTACCTCTAA | 59.786 | 57.895 | 24.54 | 2.18 | 34.11 | 2.10 |
540 | 544 | 0.392863 | TAGGTGTGCGCGTACCTCTA | 60.393 | 55.000 | 30.99 | 22.18 | 43.69 | 2.43 |
541 | 545 | 1.035932 | ATAGGTGTGCGCGTACCTCT | 61.036 | 55.000 | 30.99 | 21.92 | 43.69 | 3.69 |
542 | 546 | 0.870307 | CATAGGTGTGCGCGTACCTC | 60.870 | 60.000 | 30.99 | 18.90 | 43.69 | 3.85 |
544 | 548 | 0.870307 | CTCATAGGTGTGCGCGTACC | 60.870 | 60.000 | 24.54 | 21.36 | 37.23 | 3.34 |
545 | 549 | 0.099968 | TCTCATAGGTGTGCGCGTAC | 59.900 | 55.000 | 21.02 | 21.02 | 0.00 | 3.67 |
546 | 550 | 0.380733 | CTCTCATAGGTGTGCGCGTA | 59.619 | 55.000 | 8.43 | 0.00 | 0.00 | 4.42 |
547 | 551 | 1.139734 | CTCTCATAGGTGTGCGCGT | 59.860 | 57.895 | 8.43 | 0.00 | 0.00 | 6.01 |
548 | 552 | 0.593518 | CTCTCTCATAGGTGTGCGCG | 60.594 | 60.000 | 0.00 | 0.00 | 0.00 | 6.86 |
549 | 553 | 0.249238 | CCTCTCTCATAGGTGTGCGC | 60.249 | 60.000 | 0.00 | 0.00 | 0.00 | 6.09 |
550 | 554 | 0.387202 | CCCTCTCTCATAGGTGTGCG | 59.613 | 60.000 | 0.00 | 0.00 | 31.70 | 5.34 |
551 | 555 | 1.686052 | CTCCCTCTCTCATAGGTGTGC | 59.314 | 57.143 | 0.00 | 0.00 | 31.70 | 4.57 |
552 | 556 | 3.025322 | ACTCCCTCTCTCATAGGTGTG | 57.975 | 52.381 | 0.00 | 0.00 | 31.70 | 3.82 |
553 | 557 | 3.789274 | AGTACTCCCTCTCTCATAGGTGT | 59.211 | 47.826 | 0.00 | 0.00 | 31.70 | 4.16 |
554 | 558 | 4.447138 | AGTACTCCCTCTCTCATAGGTG | 57.553 | 50.000 | 0.00 | 0.00 | 31.70 | 4.00 |
555 | 559 | 6.790177 | AATAGTACTCCCTCTCTCATAGGT | 57.210 | 41.667 | 0.00 | 0.00 | 31.70 | 3.08 |
556 | 560 | 9.016438 | GTTTAATAGTACTCCCTCTCTCATAGG | 57.984 | 40.741 | 0.00 | 0.00 | 0.00 | 2.57 |
557 | 561 | 9.016438 | GGTTTAATAGTACTCCCTCTCTCATAG | 57.984 | 40.741 | 0.00 | 0.00 | 0.00 | 2.23 |
558 | 562 | 7.664731 | CGGTTTAATAGTACTCCCTCTCTCATA | 59.335 | 40.741 | 0.00 | 0.00 | 0.00 | 2.15 |
559 | 563 | 6.490721 | CGGTTTAATAGTACTCCCTCTCTCAT | 59.509 | 42.308 | 0.00 | 0.00 | 0.00 | 2.90 |
560 | 564 | 5.826737 | CGGTTTAATAGTACTCCCTCTCTCA | 59.173 | 44.000 | 0.00 | 0.00 | 0.00 | 3.27 |
561 | 565 | 5.278414 | GCGGTTTAATAGTACTCCCTCTCTC | 60.278 | 48.000 | 0.00 | 0.00 | 0.00 | 3.20 |
562 | 566 | 4.583907 | GCGGTTTAATAGTACTCCCTCTCT | 59.416 | 45.833 | 0.00 | 0.00 | 0.00 | 3.10 |
563 | 567 | 4.261952 | GGCGGTTTAATAGTACTCCCTCTC | 60.262 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
564 | 568 | 3.640498 | GGCGGTTTAATAGTACTCCCTCT | 59.360 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
565 | 569 | 3.640498 | AGGCGGTTTAATAGTACTCCCTC | 59.360 | 47.826 | 0.00 | 0.00 | 0.00 | 4.30 |
568 | 572 | 5.781210 | ACTAGGCGGTTTAATAGTACTCC | 57.219 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
569 | 573 | 6.699204 | GGAAACTAGGCGGTTTAATAGTACTC | 59.301 | 42.308 | 0.00 | 0.00 | 39.20 | 2.59 |
571 | 575 | 5.755375 | GGGAAACTAGGCGGTTTAATAGTAC | 59.245 | 44.000 | 10.55 | 0.00 | 39.20 | 2.73 |
577 | 581 | 3.505480 | TTGGGAAACTAGGCGGTTTAA | 57.495 | 42.857 | 10.55 | 1.78 | 39.20 | 1.52 |
651 | 655 | 3.600388 | GTGCAAGATATCCCCGGATTAG | 58.400 | 50.000 | 0.73 | 0.00 | 36.17 | 1.73 |
748 | 2100 | 1.409427 | AGCGAACCATGCTAGGAGTAC | 59.591 | 52.381 | 1.88 | 0.00 | 41.87 | 2.73 |
750 | 2102 | 0.176680 | CAGCGAACCATGCTAGGAGT | 59.823 | 55.000 | 1.88 | 0.00 | 41.72 | 3.85 |
971 | 2361 | 3.672255 | TACACAGCGCGCGGTACTC | 62.672 | 63.158 | 34.97 | 15.77 | 0.00 | 2.59 |
1012 | 2402 | 0.884259 | TTGTGCTGGTGGATCGTGTG | 60.884 | 55.000 | 0.00 | 0.00 | 0.00 | 3.82 |
1024 | 2414 | 0.952497 | AGGTCACGCTCATTGTGCTG | 60.952 | 55.000 | 8.87 | 6.51 | 37.26 | 4.41 |
1169 | 2580 | 2.718073 | TAAAGAGCCCCGAGGACGC | 61.718 | 63.158 | 0.00 | 0.00 | 38.29 | 5.19 |
1319 | 2730 | 0.586802 | CTCGTACGAGATGCCGATGA | 59.413 | 55.000 | 36.12 | 1.92 | 44.53 | 2.92 |
1401 | 2812 | 2.584608 | CGGTGGCCCTGGTAGAAG | 59.415 | 66.667 | 0.00 | 0.00 | 0.00 | 2.85 |
1638 | 5508 | 2.670479 | CTCATCGTCTTGATCCGGATG | 58.330 | 52.381 | 24.82 | 7.94 | 34.13 | 3.51 |
1645 | 5515 | 2.005451 | GTTGCAGCTCATCGTCTTGAT | 58.995 | 47.619 | 0.00 | 0.00 | 38.01 | 2.57 |
1688 | 5558 | 3.943858 | GTCGTTTAACGGCAAAGCCCG | 62.944 | 57.143 | 17.44 | 0.00 | 46.84 | 6.13 |
1715 | 5601 | 7.860872 | TCATTGTACGCTTCACATATACAGTAG | 59.139 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
1722 | 5772 | 7.710907 | ACATAACTCATTGTACGCTTCACATAT | 59.289 | 33.333 | 0.00 | 0.00 | 0.00 | 1.78 |
1723 | 5773 | 7.039270 | ACATAACTCATTGTACGCTTCACATA | 58.961 | 34.615 | 0.00 | 0.00 | 0.00 | 2.29 |
1850 | 5912 | 7.731882 | TGAACTATCGATACAAACAAACCAA | 57.268 | 32.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1972 | 6034 | 5.241506 | GGATTGACATTTGACTGTTGAGGAA | 59.758 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2009 | 6071 | 7.657354 | GGAGAAAGAAAATAAACAATGCACCTT | 59.343 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
2106 | 6168 | 3.222855 | TTTGGCCAACGCAGGGTG | 61.223 | 61.111 | 20.35 | 0.00 | 36.38 | 4.61 |
2107 | 6169 | 3.223589 | GTTTGGCCAACGCAGGGT | 61.224 | 61.111 | 20.35 | 0.00 | 36.38 | 4.34 |
2126 | 6188 | 0.179032 | TGTGAGTGGCAACGGACAAT | 60.179 | 50.000 | 0.00 | 0.00 | 42.51 | 2.71 |
2132 | 6194 | 2.631428 | CGGTTGTGAGTGGCAACG | 59.369 | 61.111 | 0.00 | 0.00 | 45.01 | 4.10 |
2134 | 6196 | 1.227823 | CTCCGGTTGTGAGTGGCAA | 60.228 | 57.895 | 0.00 | 0.00 | 0.00 | 4.52 |
2141 | 6203 | 4.680237 | CAGGCGCTCCGGTTGTGA | 62.680 | 66.667 | 7.64 | 0.00 | 37.47 | 3.58 |
2164 | 6238 | 1.314534 | CCGTGGATCAAGCATGGCAA | 61.315 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2165 | 6239 | 1.750018 | CCGTGGATCAAGCATGGCA | 60.750 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
2169 | 6243 | 0.179000 | GGAGACCGTGGATCAAGCAT | 59.821 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
2182 | 6256 | 2.501610 | GGAGGCATGACGGAGACC | 59.498 | 66.667 | 0.00 | 0.00 | 0.00 | 3.85 |
2184 | 6258 | 3.838271 | GCGGAGGCATGACGGAGA | 61.838 | 66.667 | 0.00 | 0.00 | 39.62 | 3.71 |
2241 | 6315 | 0.690762 | TGGTAGGTTGCTTGTCCCTC | 59.309 | 55.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2247 | 6321 | 3.340814 | AGATCACTGGTAGGTTGCTTG | 57.659 | 47.619 | 0.00 | 0.00 | 0.00 | 4.01 |
2253 | 6327 | 5.654901 | TCTCATCTAGATCACTGGTAGGT | 57.345 | 43.478 | 1.03 | 0.00 | 0.00 | 3.08 |
2280 | 6358 | 1.400530 | CGCCCCCTTCTATCTCGGTT | 61.401 | 60.000 | 0.00 | 0.00 | 0.00 | 4.44 |
2305 | 6383 | 4.742649 | TCGAGCACTCTCCCCGCT | 62.743 | 66.667 | 0.00 | 0.00 | 39.12 | 5.52 |
2307 | 6385 | 3.827898 | GGTCGAGCACTCTCCCCG | 61.828 | 72.222 | 10.30 | 0.00 | 35.94 | 5.73 |
2308 | 6386 | 2.680352 | TGGTCGAGCACTCTCCCC | 60.680 | 66.667 | 14.39 | 0.00 | 35.94 | 4.81 |
2325 | 6403 | 2.112279 | TACACAGACCTTTCCCACCT | 57.888 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
2332 | 6410 | 2.237392 | GCAGGAGGATACACAGACCTTT | 59.763 | 50.000 | 0.00 | 0.00 | 41.41 | 3.11 |
2333 | 6411 | 1.834263 | GCAGGAGGATACACAGACCTT | 59.166 | 52.381 | 0.00 | 0.00 | 41.41 | 3.50 |
2334 | 6412 | 1.007721 | AGCAGGAGGATACACAGACCT | 59.992 | 52.381 | 0.00 | 0.00 | 41.41 | 3.85 |
2340 | 6418 | 1.383523 | GGCAAAGCAGGAGGATACAC | 58.616 | 55.000 | 0.00 | 0.00 | 41.41 | 2.90 |
2372 | 6450 | 4.527427 | GTCAACCCTCCTCCACCTATATAC | 59.473 | 50.000 | 0.00 | 0.00 | 0.00 | 1.47 |
2429 | 6507 | 1.153549 | CAACTCTAGGGGCACGAGC | 60.154 | 63.158 | 0.00 | 0.00 | 41.10 | 5.03 |
2430 | 6508 | 1.153549 | GCAACTCTAGGGGCACGAG | 60.154 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
2431 | 6509 | 2.656069 | GGCAACTCTAGGGGCACGA | 61.656 | 63.158 | 0.00 | 0.00 | 0.00 | 4.35 |
2432 | 6510 | 2.125106 | GGCAACTCTAGGGGCACG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
2444 | 6522 | 2.200989 | TGCATATGGGCAAGGCAAC | 58.799 | 52.632 | 4.56 | 0.00 | 41.65 | 4.17 |
2445 | 6523 | 4.781264 | TGCATATGGGCAAGGCAA | 57.219 | 50.000 | 4.56 | 0.00 | 41.65 | 4.52 |
2467 | 6545 | 4.218686 | AGTTGGGGTGGGGTGCAC | 62.219 | 66.667 | 8.80 | 8.80 | 0.00 | 4.57 |
2468 | 6546 | 3.897122 | GAGTTGGGGTGGGGTGCA | 61.897 | 66.667 | 0.00 | 0.00 | 0.00 | 4.57 |
2469 | 6547 | 2.730129 | ATTGAGTTGGGGTGGGGTGC | 62.730 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
2470 | 6548 | 0.611896 | GATTGAGTTGGGGTGGGGTG | 60.612 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2471 | 6549 | 1.774300 | GATTGAGTTGGGGTGGGGT | 59.226 | 57.895 | 0.00 | 0.00 | 0.00 | 4.95 |
2472 | 6550 | 1.378514 | CGATTGAGTTGGGGTGGGG | 60.379 | 63.158 | 0.00 | 0.00 | 0.00 | 4.96 |
2473 | 6551 | 2.046285 | GCGATTGAGTTGGGGTGGG | 61.046 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
2474 | 6552 | 2.046285 | GGCGATTGAGTTGGGGTGG | 61.046 | 63.158 | 0.00 | 0.00 | 0.00 | 4.61 |
2475 | 6553 | 0.609131 | AAGGCGATTGAGTTGGGGTG | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
2476 | 6554 | 0.988832 | TAAGGCGATTGAGTTGGGGT | 59.011 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
2477 | 6555 | 1.379527 | GTAAGGCGATTGAGTTGGGG | 58.620 | 55.000 | 0.00 | 0.00 | 0.00 | 4.96 |
2478 | 6556 | 1.379527 | GGTAAGGCGATTGAGTTGGG | 58.620 | 55.000 | 0.00 | 0.00 | 0.00 | 4.12 |
2479 | 6557 | 1.379527 | GGGTAAGGCGATTGAGTTGG | 58.620 | 55.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2480 | 6558 | 1.379527 | GGGGTAAGGCGATTGAGTTG | 58.620 | 55.000 | 0.00 | 0.00 | 0.00 | 3.16 |
2481 | 6559 | 0.255033 | GGGGGTAAGGCGATTGAGTT | 59.745 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
2482 | 6560 | 0.912487 | TGGGGGTAAGGCGATTGAGT | 60.912 | 55.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2483 | 6561 | 0.254747 | TTGGGGGTAAGGCGATTGAG | 59.745 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2484 | 6562 | 0.254747 | CTTGGGGGTAAGGCGATTGA | 59.745 | 55.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2485 | 6563 | 1.384222 | GCTTGGGGGTAAGGCGATTG | 61.384 | 60.000 | 0.00 | 0.00 | 0.00 | 2.67 |
2486 | 6564 | 1.076995 | GCTTGGGGGTAAGGCGATT | 60.077 | 57.895 | 0.00 | 0.00 | 0.00 | 3.34 |
2487 | 6565 | 1.858739 | TTGCTTGGGGGTAAGGCGAT | 61.859 | 55.000 | 0.00 | 0.00 | 0.00 | 4.58 |
2490 | 6568 | 1.682344 | CCTTGCTTGGGGGTAAGGC | 60.682 | 63.158 | 0.00 | 0.00 | 40.88 | 4.35 |
2495 | 6573 | 2.201210 | CCAACCTTGCTTGGGGGT | 59.799 | 61.111 | 0.00 | 0.00 | 37.62 | 4.95 |
2508 | 6586 | 0.815615 | GGATCGAGGATGCACCCAAC | 60.816 | 60.000 | 0.00 | 0.00 | 40.05 | 3.77 |
2513 | 6591 | 2.890808 | TGTAAGGATCGAGGATGCAC | 57.109 | 50.000 | 0.00 | 0.00 | 32.78 | 4.57 |
2517 | 6595 | 6.126883 | TGTTTTGGTATGTAAGGATCGAGGAT | 60.127 | 38.462 | 0.00 | 0.00 | 0.00 | 3.24 |
2521 | 6599 | 6.045072 | AGTGTTTTGGTATGTAAGGATCGA | 57.955 | 37.500 | 0.00 | 0.00 | 0.00 | 3.59 |
2522 | 6600 | 5.293569 | GGAGTGTTTTGGTATGTAAGGATCG | 59.706 | 44.000 | 0.00 | 0.00 | 0.00 | 3.69 |
2523 | 6601 | 6.177610 | TGGAGTGTTTTGGTATGTAAGGATC | 58.822 | 40.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2524 | 6602 | 6.134535 | TGGAGTGTTTTGGTATGTAAGGAT | 57.865 | 37.500 | 0.00 | 0.00 | 0.00 | 3.24 |
2525 | 6603 | 5.570205 | TGGAGTGTTTTGGTATGTAAGGA | 57.430 | 39.130 | 0.00 | 0.00 | 0.00 | 3.36 |
2528 | 6654 | 5.636123 | ACCATGGAGTGTTTTGGTATGTAA | 58.364 | 37.500 | 21.47 | 0.00 | 40.62 | 2.41 |
2536 | 6662 | 7.280205 | GGTCTAGTTATACCATGGAGTGTTTTG | 59.720 | 40.741 | 21.47 | 3.01 | 35.73 | 2.44 |
2537 | 6663 | 7.336396 | GGTCTAGTTATACCATGGAGTGTTTT | 58.664 | 38.462 | 21.47 | 0.00 | 35.73 | 2.43 |
2538 | 6664 | 6.126854 | GGGTCTAGTTATACCATGGAGTGTTT | 60.127 | 42.308 | 21.47 | 0.00 | 37.51 | 2.83 |
2554 | 6680 | 6.041751 | CGAAAGTATTATGGGAGGGTCTAGTT | 59.958 | 42.308 | 0.00 | 0.00 | 0.00 | 2.24 |
2560 | 6686 | 2.709397 | CCCGAAAGTATTATGGGAGGGT | 59.291 | 50.000 | 0.00 | 0.00 | 42.77 | 4.34 |
2589 | 6715 | 3.055747 | AGAGAGGGTTCCGAATGTCTTTC | 60.056 | 47.826 | 0.00 | 0.00 | 0.00 | 2.62 |
2593 | 6719 | 2.100087 | GAGAGAGAGGGTTCCGAATGTC | 59.900 | 54.545 | 0.00 | 0.00 | 0.00 | 3.06 |
2601 | 6727 | 1.765904 | GGGGAATGAGAGAGAGGGTTC | 59.234 | 57.143 | 0.00 | 0.00 | 0.00 | 3.62 |
2609 | 6735 | 5.848369 | ACATGAGATAATGGGGAATGAGAGA | 59.152 | 40.000 | 0.00 | 0.00 | 31.46 | 3.10 |
2613 | 6739 | 6.671605 | TGAAACATGAGATAATGGGGAATGA | 58.328 | 36.000 | 0.00 | 0.00 | 31.46 | 2.57 |
2619 | 6745 | 6.458751 | CCGAACTTGAAACATGAGATAATGGG | 60.459 | 42.308 | 0.00 | 0.00 | 31.46 | 4.00 |
2622 | 6748 | 5.647658 | TGCCGAACTTGAAACATGAGATAAT | 59.352 | 36.000 | 0.00 | 0.00 | 0.00 | 1.28 |
2640 | 6766 | 2.098614 | ACATGGTTGCATATTGCCGAA | 58.901 | 42.857 | 0.00 | 0.00 | 44.23 | 4.30 |
2642 | 6768 | 2.601979 | CGTACATGGTTGCATATTGCCG | 60.602 | 50.000 | 0.00 | 0.00 | 44.23 | 5.69 |
2644 | 6770 | 2.616376 | TCCGTACATGGTTGCATATTGC | 59.384 | 45.455 | 0.00 | 0.00 | 45.29 | 3.56 |
2645 | 6771 | 4.095632 | TGTTCCGTACATGGTTGCATATTG | 59.904 | 41.667 | 0.00 | 0.00 | 0.00 | 1.90 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.