Multiple sequence alignment - TraesCS4A01G214800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G214800 chr4A 100.000 2444 0 0 1 2444 513090859 513088416 0.000000e+00 4514
1 TraesCS4A01G214800 chr4B 93.083 1518 63 17 746 2242 106970038 106971534 0.000000e+00 2183
2 TraesCS4A01G214800 chr4B 90.066 151 10 3 202 347 106969893 106970043 8.920000e-45 191
3 TraesCS4A01G214800 chr4D 89.056 1727 91 32 748 2444 74605705 74607363 0.000000e+00 2052
4 TraesCS4A01G214800 chr4D 95.652 115 5 0 215 329 74605583 74605697 4.150000e-43 185
5 TraesCS4A01G214800 chr3A 94.924 394 18 1 348 741 1917926 1918317 1.240000e-172 616
6 TraesCS4A01G214800 chr3A 94.207 397 18 4 348 743 194702846 194702454 3.480000e-168 601
7 TraesCS4A01G214800 chr3A 93.199 397 24 3 345 741 608139908 608140301 4.530000e-162 580
8 TraesCS4A01G214800 chr1A 93.399 409 23 4 348 756 581867095 581866691 9.670000e-169 603
9 TraesCS4A01G214800 chr1A 93.955 397 17 4 348 744 376500666 376501055 5.820000e-166 593
10 TraesCS4A01G214800 chr7B 94.177 395 21 2 348 741 3362643 3362250 3.480000e-168 601
11 TraesCS4A01G214800 chr5B 94.177 395 21 2 347 741 34896307 34896699 3.480000e-168 601
12 TraesCS4A01G214800 chr5B 86.567 67 9 0 1138 1204 216392885 216392951 9.370000e-10 75
13 TraesCS4A01G214800 chr7A 94.162 394 21 2 348 740 579566145 579565753 1.250000e-167 599
14 TraesCS4A01G214800 chr5A 93.418 395 23 2 347 741 667931035 667930644 1.260000e-162 582
15 TraesCS4A01G214800 chr5A 86.567 67 9 0 1138 1204 248536608 248536542 9.370000e-10 75
16 TraesCS4A01G214800 chr5D 86.567 67 9 0 1138 1204 193507387 193507453 9.370000e-10 75


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G214800 chr4A 513088416 513090859 2443 True 4514.0 4514 100.0000 1 2444 1 chr4A.!!$R1 2443
1 TraesCS4A01G214800 chr4B 106969893 106971534 1641 False 1187.0 2183 91.5745 202 2242 2 chr4B.!!$F1 2040
2 TraesCS4A01G214800 chr4D 74605583 74607363 1780 False 1118.5 2052 92.3540 215 2444 2 chr4D.!!$F1 2229

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
487 493 0.028374 GTGTACGCGGCACAAAGTTT 59.972 50.0 24.34 0.0 36.88 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2375 2424 0.386113 GAGTAGGCCAGATCGTGACC 59.614 60.0 5.01 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 8.659925 CATTACTGCATCTCTCTGAGTATTTT 57.340 34.615 4.32 0.00 0.00 1.82
41 42 9.755804 CATTACTGCATCTCTCTGAGTATTTTA 57.244 33.333 4.32 0.00 0.00 1.52
130 131 9.677567 TTTGATTCTATGTAAACTTGTTCAAGC 57.322 29.630 11.79 0.00 0.00 4.01
131 132 8.621532 TGATTCTATGTAAACTTGTTCAAGCT 57.378 30.769 11.79 0.00 0.00 3.74
132 133 9.066892 TGATTCTATGTAAACTTGTTCAAGCTT 57.933 29.630 11.79 8.96 0.00 3.74
133 134 9.334693 GATTCTATGTAAACTTGTTCAAGCTTG 57.665 33.333 20.81 20.81 0.00 4.01
134 135 8.445275 TTCTATGTAAACTTGTTCAAGCTTGA 57.555 30.769 25.16 25.16 34.92 3.02
135 136 8.621532 TCTATGTAAACTTGTTCAAGCTTGAT 57.378 30.769 28.89 14.99 37.00 2.57
136 137 8.721478 TCTATGTAAACTTGTTCAAGCTTGATC 58.279 33.333 28.89 26.44 37.00 2.92
137 138 6.691754 TGTAAACTTGTTCAAGCTTGATCA 57.308 33.333 28.30 28.30 37.00 2.92
138 139 7.094508 TGTAAACTTGTTCAAGCTTGATCAA 57.905 32.000 34.35 34.35 41.80 2.57
139 140 6.972328 TGTAAACTTGTTCAAGCTTGATCAAC 59.028 34.615 33.79 27.43 40.19 3.18
140 141 5.841957 AACTTGTTCAAGCTTGATCAACT 57.158 34.783 33.79 26.12 40.19 3.16
141 142 5.841957 ACTTGTTCAAGCTTGATCAACTT 57.158 34.783 33.79 25.02 40.19 2.66
142 143 5.825507 ACTTGTTCAAGCTTGATCAACTTC 58.174 37.500 33.79 18.42 40.19 3.01
143 144 4.472691 TGTTCAAGCTTGATCAACTTCG 57.527 40.909 29.34 2.63 37.00 3.79
144 145 3.250762 TGTTCAAGCTTGATCAACTTCGG 59.749 43.478 29.34 2.14 37.00 4.30
145 146 3.126001 TCAAGCTTGATCAACTTCGGT 57.874 42.857 25.16 5.97 31.01 4.69
146 147 2.807967 TCAAGCTTGATCAACTTCGGTG 59.192 45.455 25.16 9.26 31.01 4.94
147 148 2.549754 CAAGCTTGATCAACTTCGGTGT 59.450 45.455 22.31 0.00 0.00 4.16
148 149 2.851195 AGCTTGATCAACTTCGGTGTT 58.149 42.857 3.38 0.00 0.00 3.32
149 150 3.214328 AGCTTGATCAACTTCGGTGTTT 58.786 40.909 3.38 0.00 0.00 2.83
150 151 3.003689 AGCTTGATCAACTTCGGTGTTTG 59.996 43.478 3.38 0.00 0.00 2.93
151 152 3.003275 GCTTGATCAACTTCGGTGTTTGA 59.997 43.478 3.38 0.00 0.00 2.69
152 153 4.320494 GCTTGATCAACTTCGGTGTTTGAT 60.320 41.667 3.38 0.00 0.00 2.57
153 154 5.762045 CTTGATCAACTTCGGTGTTTGATT 58.238 37.500 3.38 0.00 0.00 2.57
154 155 5.356882 TGATCAACTTCGGTGTTTGATTC 57.643 39.130 0.00 0.00 0.00 2.52
155 156 4.819088 TGATCAACTTCGGTGTTTGATTCA 59.181 37.500 0.00 0.00 0.00 2.57
156 157 5.298026 TGATCAACTTCGGTGTTTGATTCAA 59.702 36.000 0.00 0.00 0.00 2.69
157 158 4.915704 TCAACTTCGGTGTTTGATTCAAC 58.084 39.130 0.00 0.00 0.00 3.18
158 159 3.982576 ACTTCGGTGTTTGATTCAACC 57.017 42.857 0.00 0.00 0.00 3.77
159 160 2.621526 ACTTCGGTGTTTGATTCAACCC 59.378 45.455 0.00 0.00 0.00 4.11
160 161 2.350057 TCGGTGTTTGATTCAACCCA 57.650 45.000 0.00 0.00 0.00 4.51
161 162 1.950909 TCGGTGTTTGATTCAACCCAC 59.049 47.619 15.29 15.29 0.00 4.61
162 163 1.953686 CGGTGTTTGATTCAACCCACT 59.046 47.619 19.77 0.00 30.84 4.00
163 164 2.287547 CGGTGTTTGATTCAACCCACTG 60.288 50.000 19.77 18.26 30.84 3.66
164 165 2.955660 GGTGTTTGATTCAACCCACTGA 59.044 45.455 19.77 0.00 30.84 3.41
165 166 3.243401 GGTGTTTGATTCAACCCACTGAC 60.243 47.826 19.77 7.79 30.84 3.51
166 167 2.955660 TGTTTGATTCAACCCACTGACC 59.044 45.455 0.00 0.00 0.00 4.02
167 168 2.955660 GTTTGATTCAACCCACTGACCA 59.044 45.455 0.00 0.00 0.00 4.02
168 169 2.566833 TGATTCAACCCACTGACCAG 57.433 50.000 0.00 0.00 0.00 4.00
169 170 1.168714 GATTCAACCCACTGACCAGC 58.831 55.000 0.00 0.00 0.00 4.85
170 171 0.773644 ATTCAACCCACTGACCAGCT 59.226 50.000 0.00 0.00 0.00 4.24
171 172 0.550914 TTCAACCCACTGACCAGCTT 59.449 50.000 0.00 0.00 0.00 3.74
172 173 0.550914 TCAACCCACTGACCAGCTTT 59.449 50.000 0.00 0.00 0.00 3.51
173 174 1.064017 TCAACCCACTGACCAGCTTTT 60.064 47.619 0.00 0.00 0.00 2.27
174 175 1.338020 CAACCCACTGACCAGCTTTTC 59.662 52.381 0.00 0.00 0.00 2.29
175 176 0.178990 ACCCACTGACCAGCTTTTCC 60.179 55.000 0.00 0.00 0.00 3.13
176 177 0.895559 CCCACTGACCAGCTTTTCCC 60.896 60.000 0.00 0.00 0.00 3.97
177 178 0.178992 CCACTGACCAGCTTTTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
178 179 0.954452 CACTGACCAGCTTTTCCCAC 59.046 55.000 0.00 0.00 0.00 4.61
179 180 0.178990 ACTGACCAGCTTTTCCCACC 60.179 55.000 0.00 0.00 0.00 4.61
180 181 0.895559 CTGACCAGCTTTTCCCACCC 60.896 60.000 0.00 0.00 0.00 4.61
181 182 1.971695 GACCAGCTTTTCCCACCCG 60.972 63.158 0.00 0.00 0.00 5.28
182 183 3.373565 CCAGCTTTTCCCACCCGC 61.374 66.667 0.00 0.00 0.00 6.13
183 184 2.597217 CAGCTTTTCCCACCCGCA 60.597 61.111 0.00 0.00 0.00 5.69
184 185 2.197324 AGCTTTTCCCACCCGCAA 59.803 55.556 0.00 0.00 0.00 4.85
185 186 1.228862 AGCTTTTCCCACCCGCAAT 60.229 52.632 0.00 0.00 0.00 3.56
186 187 0.039035 AGCTTTTCCCACCCGCAATA 59.961 50.000 0.00 0.00 0.00 1.90
187 188 0.455815 GCTTTTCCCACCCGCAATAG 59.544 55.000 0.00 0.00 0.00 1.73
188 189 0.455815 CTTTTCCCACCCGCAATAGC 59.544 55.000 0.00 0.00 37.42 2.97
189 190 0.039035 TTTTCCCACCCGCAATAGCT 59.961 50.000 0.00 0.00 39.10 3.32
190 191 0.039035 TTTCCCACCCGCAATAGCTT 59.961 50.000 0.00 0.00 39.10 3.74
191 192 0.913205 TTCCCACCCGCAATAGCTTA 59.087 50.000 0.00 0.00 39.10 3.09
192 193 0.179468 TCCCACCCGCAATAGCTTAC 59.821 55.000 0.00 0.00 39.10 2.34
193 194 0.180406 CCCACCCGCAATAGCTTACT 59.820 55.000 0.00 0.00 39.10 2.24
194 195 1.299541 CCACCCGCAATAGCTTACTG 58.700 55.000 0.00 0.00 39.10 2.74
195 196 1.406887 CCACCCGCAATAGCTTACTGT 60.407 52.381 0.00 0.00 39.10 3.55
196 197 1.933853 CACCCGCAATAGCTTACTGTC 59.066 52.381 0.00 0.00 39.10 3.51
197 198 1.553248 ACCCGCAATAGCTTACTGTCA 59.447 47.619 0.00 0.00 39.10 3.58
198 199 2.027561 ACCCGCAATAGCTTACTGTCAA 60.028 45.455 0.00 0.00 39.10 3.18
199 200 2.351726 CCCGCAATAGCTTACTGTCAAC 59.648 50.000 0.00 0.00 39.10 3.18
200 201 3.262420 CCGCAATAGCTTACTGTCAACT 58.738 45.455 0.00 0.00 39.10 3.16
212 213 0.107831 TGTCAACTTTCGTCAGGGGG 59.892 55.000 0.00 0.00 0.00 5.40
256 262 1.277273 GGAAGCAAGTTACCCGTACCT 59.723 52.381 0.00 0.00 0.00 3.08
311 317 2.863137 CGTCCATCTCTTGAAGCTTAGC 59.137 50.000 0.00 0.00 0.00 3.09
331 337 1.303888 CTGGCCAACCACAGCAGAT 60.304 57.895 7.01 0.00 42.67 2.90
353 359 0.467384 CACCTATGCACCAGAGAGGG 59.533 60.000 0.00 0.00 43.89 4.30
354 360 1.341156 ACCTATGCACCAGAGAGGGC 61.341 60.000 0.00 0.00 43.89 5.19
355 361 1.340399 CCTATGCACCAGAGAGGGCA 61.340 60.000 0.00 0.00 44.23 5.36
356 362 0.179062 CTATGCACCAGAGAGGGCAC 60.179 60.000 0.00 0.00 43.36 5.01
370 376 2.496942 GGCACCATCTGAACCCATG 58.503 57.895 0.00 0.00 0.00 3.66
371 377 1.039233 GGCACCATCTGAACCCATGG 61.039 60.000 4.14 4.14 44.68 3.66
372 378 1.039233 GCACCATCTGAACCCATGGG 61.039 60.000 30.23 30.23 43.59 4.00
373 379 1.039233 CACCATCTGAACCCATGGGC 61.039 60.000 31.73 16.20 43.59 5.36
374 380 1.307309 CCATCTGAACCCATGGGCA 59.693 57.895 31.73 20.09 36.62 5.36
375 381 0.105862 CCATCTGAACCCATGGGCAT 60.106 55.000 31.73 20.35 36.62 4.40
376 382 1.145531 CCATCTGAACCCATGGGCATA 59.854 52.381 31.73 14.38 36.62 3.14
377 383 2.225192 CCATCTGAACCCATGGGCATAT 60.225 50.000 31.73 16.01 36.62 1.78
378 384 2.662535 TCTGAACCCATGGGCATATG 57.337 50.000 31.73 16.78 39.32 1.78
379 385 0.963962 CTGAACCCATGGGCATATGC 59.036 55.000 31.73 19.79 39.32 3.14
380 386 0.261109 TGAACCCATGGGCATATGCA 59.739 50.000 31.73 13.55 44.36 3.96
381 387 0.675633 GAACCCATGGGCATATGCAC 59.324 55.000 31.73 25.88 46.69 4.57
382 388 0.760189 AACCCATGGGCATATGCACC 60.760 55.000 31.73 23.82 45.73 5.01
383 389 1.909781 CCCATGGGCATATGCACCC 60.910 63.158 26.74 19.95 45.73 4.61
387 393 4.684623 GGGCATATGCACCCACTT 57.315 55.556 28.07 0.00 46.22 3.16
388 394 2.900547 GGGCATATGCACCCACTTT 58.099 52.632 28.07 0.00 46.22 2.66
389 395 1.194218 GGGCATATGCACCCACTTTT 58.806 50.000 28.07 0.00 46.22 2.27
390 396 1.136891 GGGCATATGCACCCACTTTTC 59.863 52.381 28.07 7.31 46.22 2.29
391 397 1.824230 GGCATATGCACCCACTTTTCA 59.176 47.619 28.07 0.00 44.36 2.69
392 398 2.431782 GGCATATGCACCCACTTTTCAT 59.568 45.455 28.07 0.00 44.36 2.57
393 399 3.636300 GGCATATGCACCCACTTTTCATA 59.364 43.478 28.07 0.00 44.36 2.15
394 400 4.099266 GGCATATGCACCCACTTTTCATAA 59.901 41.667 28.07 0.00 44.36 1.90
395 401 5.395103 GGCATATGCACCCACTTTTCATAAA 60.395 40.000 28.07 0.00 44.36 1.40
396 402 6.105333 GCATATGCACCCACTTTTCATAAAA 58.895 36.000 22.84 0.00 41.59 1.52
397 403 6.762661 GCATATGCACCCACTTTTCATAAAAT 59.237 34.615 22.84 0.00 41.59 1.82
398 404 7.254522 GCATATGCACCCACTTTTCATAAAATG 60.255 37.037 22.84 0.00 41.59 2.32
399 405 4.314121 TGCACCCACTTTTCATAAAATGC 58.686 39.130 0.00 0.00 33.96 3.56
400 406 4.202295 TGCACCCACTTTTCATAAAATGCA 60.202 37.500 6.35 6.35 38.38 3.96
401 407 4.937015 GCACCCACTTTTCATAAAATGCAT 59.063 37.500 0.00 0.00 33.71 3.96
402 408 5.412286 GCACCCACTTTTCATAAAATGCATT 59.588 36.000 5.99 5.99 33.71 3.56
403 409 6.072563 GCACCCACTTTTCATAAAATGCATTT 60.073 34.615 18.99 18.99 33.71 2.32
404 410 7.521910 GCACCCACTTTTCATAAAATGCATTTT 60.522 33.333 33.26 33.26 42.21 1.82
405 411 8.997323 CACCCACTTTTCATAAAATGCATTTTA 58.003 29.630 34.85 34.85 43.80 1.52
406 412 9.566432 ACCCACTTTTCATAAAATGCATTTTAA 57.434 25.926 35.79 24.51 43.16 1.52
408 414 9.545611 CCACTTTTCATAAAATGCATTTTAAGC 57.454 29.630 35.79 0.00 43.16 3.09
411 417 9.253275 CTTTTCATAAAATGCATTTTAAGCACG 57.747 29.630 35.79 24.47 45.95 5.34
412 418 7.881643 TTCATAAAATGCATTTTAAGCACGT 57.118 28.000 35.79 22.04 45.95 4.49
413 419 7.881643 TCATAAAATGCATTTTAAGCACGTT 57.118 28.000 35.79 21.46 45.95 3.99
414 420 8.304202 TCATAAAATGCATTTTAAGCACGTTT 57.696 26.923 35.79 20.89 45.95 3.60
415 421 8.768955 TCATAAAATGCATTTTAAGCACGTTTT 58.231 25.926 35.79 20.32 45.95 2.43
416 422 9.379811 CATAAAATGCATTTTAAGCACGTTTTT 57.620 25.926 35.79 19.75 45.95 1.94
419 425 9.774742 AAAATGCATTTTAAGCACGTTTTTAAA 57.225 22.222 31.00 8.97 45.95 1.52
420 426 9.943163 AAATGCATTTTAAGCACGTTTTTAAAT 57.057 22.222 18.99 7.42 45.95 1.40
421 427 8.931905 ATGCATTTTAAGCACGTTTTTAAATG 57.068 26.923 19.53 19.53 45.95 2.32
422 428 7.910304 TGCATTTTAAGCACGTTTTTAAATGT 58.090 26.923 22.06 11.31 38.61 2.71
423 429 8.391106 TGCATTTTAAGCACGTTTTTAAATGTT 58.609 25.926 22.06 9.10 36.05 2.71
424 430 9.851043 GCATTTTAAGCACGTTTTTAAATGTTA 57.149 25.926 22.06 9.18 36.05 2.41
450 456 9.474920 AAAGAAATCAAAAGAAAATATCACGCA 57.525 25.926 0.00 0.00 0.00 5.24
451 457 9.643693 AAGAAATCAAAAGAAAATATCACGCAT 57.356 25.926 0.00 0.00 0.00 4.73
454 460 9.853555 AAATCAAAAGAAAATATCACGCATACA 57.146 25.926 0.00 0.00 0.00 2.29
456 462 8.839947 TCAAAAGAAAATATCACGCATACATG 57.160 30.769 0.00 0.00 0.00 3.21
457 463 8.458052 TCAAAAGAAAATATCACGCATACATGT 58.542 29.630 2.69 2.69 0.00 3.21
458 464 9.075519 CAAAAGAAAATATCACGCATACATGTT 57.924 29.630 2.30 0.00 0.00 2.71
459 465 8.841444 AAAGAAAATATCACGCATACATGTTC 57.159 30.769 2.30 0.00 0.00 3.18
460 466 6.649436 AGAAAATATCACGCATACATGTTCG 58.351 36.000 2.30 8.45 0.00 3.95
461 467 4.389664 AATATCACGCATACATGTTCGC 57.610 40.909 2.30 6.37 0.00 4.70
462 468 1.650825 ATCACGCATACATGTTCGCA 58.349 45.000 2.30 0.00 0.00 5.10
463 469 1.433534 TCACGCATACATGTTCGCAA 58.566 45.000 2.30 0.00 0.00 4.85
464 470 1.801178 TCACGCATACATGTTCGCAAA 59.199 42.857 2.30 0.00 0.00 3.68
465 471 1.904412 CACGCATACATGTTCGCAAAC 59.096 47.619 2.30 0.00 35.85 2.93
466 472 1.171052 CGCATACATGTTCGCAAACG 58.829 50.000 2.30 0.00 38.28 3.60
467 473 1.463363 CGCATACATGTTCGCAAACGT 60.463 47.619 2.30 0.00 41.18 3.99
471 477 3.525059 CATGTTCGCAAACGTGTGT 57.475 47.368 7.72 0.00 44.13 3.72
472 478 2.654426 CATGTTCGCAAACGTGTGTA 57.346 45.000 7.72 0.00 44.13 2.90
473 479 2.294829 CATGTTCGCAAACGTGTGTAC 58.705 47.619 7.72 4.40 44.13 2.90
482 488 3.331630 CGTGTGTACGCGGCACAA 61.332 61.111 30.30 17.31 46.65 3.33
483 489 2.872515 CGTGTGTACGCGGCACAAA 61.873 57.895 30.30 18.27 46.65 2.83
484 490 1.083015 GTGTGTACGCGGCACAAAG 60.083 57.895 30.30 0.00 46.65 2.77
485 491 1.521906 TGTGTACGCGGCACAAAGT 60.522 52.632 27.88 1.76 42.96 2.66
486 492 1.090625 TGTGTACGCGGCACAAAGTT 61.091 50.000 27.88 1.05 42.96 2.66
487 493 0.028374 GTGTACGCGGCACAAAGTTT 59.972 50.000 24.34 0.00 36.88 2.66
488 494 0.733729 TGTACGCGGCACAAAGTTTT 59.266 45.000 12.47 0.00 0.00 2.43
489 495 1.938577 TGTACGCGGCACAAAGTTTTA 59.061 42.857 12.47 0.00 0.00 1.52
490 496 2.548904 TGTACGCGGCACAAAGTTTTAT 59.451 40.909 12.47 0.00 0.00 1.40
491 497 2.044888 ACGCGGCACAAAGTTTTATG 57.955 45.000 12.47 0.00 0.00 1.90
492 498 1.604755 ACGCGGCACAAAGTTTTATGA 59.395 42.857 12.47 0.00 0.00 2.15
493 499 2.033550 ACGCGGCACAAAGTTTTATGAA 59.966 40.909 12.47 0.00 0.00 2.57
494 500 3.046390 CGCGGCACAAAGTTTTATGAAA 58.954 40.909 0.00 0.00 0.00 2.69
495 501 3.487574 CGCGGCACAAAGTTTTATGAAAA 59.512 39.130 0.00 0.00 0.00 2.29
496 502 4.026475 CGCGGCACAAAGTTTTATGAAAAA 60.026 37.500 0.00 0.00 32.15 1.94
518 524 5.717038 AATGTCTTTTTGTTTTGCCTTCG 57.283 34.783 0.00 0.00 0.00 3.79
519 525 2.926838 TGTCTTTTTGTTTTGCCTTCGC 59.073 40.909 0.00 0.00 0.00 4.70
520 526 2.926838 GTCTTTTTGTTTTGCCTTCGCA 59.073 40.909 0.00 0.00 45.49 5.10
547 553 9.651913 AAAAAGACAAATTTCAGTGCTTCTAAA 57.348 25.926 0.00 0.00 0.00 1.85
548 554 9.822185 AAAAGACAAATTTCAGTGCTTCTAAAT 57.178 25.926 0.00 0.00 0.00 1.40
551 557 9.289782 AGACAAATTTCAGTGCTTCTAAATAGT 57.710 29.630 0.00 0.00 0.00 2.12
552 558 9.334693 GACAAATTTCAGTGCTTCTAAATAGTG 57.665 33.333 0.00 0.00 0.00 2.74
553 559 8.850156 ACAAATTTCAGTGCTTCTAAATAGTGT 58.150 29.630 0.00 0.00 0.00 3.55
554 560 9.683069 CAAATTTCAGTGCTTCTAAATAGTGTT 57.317 29.630 0.00 0.00 0.00 3.32
556 562 9.899226 AATTTCAGTGCTTCTAAATAGTGTTTC 57.101 29.630 0.00 0.00 0.00 2.78
557 563 8.445275 TTTCAGTGCTTCTAAATAGTGTTTCA 57.555 30.769 0.00 0.00 0.00 2.69
558 564 7.421530 TCAGTGCTTCTAAATAGTGTTTCAC 57.578 36.000 0.00 0.00 34.10 3.18
559 565 6.145534 TCAGTGCTTCTAAATAGTGTTTCACG 59.854 38.462 0.00 0.00 39.64 4.35
560 566 6.145534 CAGTGCTTCTAAATAGTGTTTCACGA 59.854 38.462 0.00 0.00 39.64 4.35
561 567 6.145696 AGTGCTTCTAAATAGTGTTTCACGAC 59.854 38.462 0.00 0.00 39.64 4.34
562 568 5.986741 TGCTTCTAAATAGTGTTTCACGACA 59.013 36.000 0.00 0.00 39.64 4.35
563 569 6.649141 TGCTTCTAAATAGTGTTTCACGACAT 59.351 34.615 0.00 0.00 39.64 3.06
564 570 7.815549 TGCTTCTAAATAGTGTTTCACGACATA 59.184 33.333 0.00 0.00 39.64 2.29
565 571 8.653338 GCTTCTAAATAGTGTTTCACGACATAA 58.347 33.333 0.00 0.00 39.64 1.90
597 603 4.537135 TTTTTGTACAGGCCACACAAAA 57.463 36.364 25.90 25.90 45.48 2.44
598 604 4.537135 TTTTGTACAGGCCACACAAAAA 57.463 36.364 26.78 16.30 44.68 1.94
599 605 3.791973 TTGTACAGGCCACACAAAAAG 57.208 42.857 5.01 0.00 0.00 2.27
600 606 2.729194 TGTACAGGCCACACAAAAAGT 58.271 42.857 5.01 0.00 0.00 2.66
601 607 3.093057 TGTACAGGCCACACAAAAAGTT 58.907 40.909 5.01 0.00 0.00 2.66
602 608 4.270834 TGTACAGGCCACACAAAAAGTTA 58.729 39.130 5.01 0.00 0.00 2.24
603 609 4.890581 TGTACAGGCCACACAAAAAGTTAT 59.109 37.500 5.01 0.00 0.00 1.89
604 610 5.361285 TGTACAGGCCACACAAAAAGTTATT 59.639 36.000 5.01 0.00 0.00 1.40
605 611 5.351948 ACAGGCCACACAAAAAGTTATTT 57.648 34.783 5.01 0.00 0.00 1.40
606 612 5.739959 ACAGGCCACACAAAAAGTTATTTT 58.260 33.333 5.01 0.00 40.37 1.82
607 613 6.176896 ACAGGCCACACAAAAAGTTATTTTT 58.823 32.000 5.01 0.00 46.97 1.94
608 614 6.315144 ACAGGCCACACAAAAAGTTATTTTTC 59.685 34.615 5.01 0.00 44.80 2.29
609 615 5.820423 AGGCCACACAAAAAGTTATTTTTCC 59.180 36.000 5.01 0.00 44.80 3.13
610 616 5.586643 GGCCACACAAAAAGTTATTTTTCCA 59.413 36.000 0.00 0.00 44.80 3.53
611 617 6.262049 GGCCACACAAAAAGTTATTTTTCCAT 59.738 34.615 0.00 0.00 44.80 3.41
612 618 7.131565 GCCACACAAAAAGTTATTTTTCCATG 58.868 34.615 0.00 0.00 44.80 3.66
613 619 7.011857 GCCACACAAAAAGTTATTTTTCCATGA 59.988 33.333 0.00 0.00 44.80 3.07
614 620 8.887717 CCACACAAAAAGTTATTTTTCCATGAA 58.112 29.630 0.00 0.00 44.80 2.57
624 630 9.995003 AGTTATTTTTCCATGAAACTTTATGCA 57.005 25.926 0.00 0.00 30.83 3.96
626 632 6.761731 TTTTTCCATGAAACTTTATGCACG 57.238 33.333 0.00 0.00 30.83 5.34
627 633 3.485947 TCCATGAAACTTTATGCACGC 57.514 42.857 0.00 0.00 0.00 5.34
628 634 2.816672 TCCATGAAACTTTATGCACGCA 59.183 40.909 0.00 0.00 0.00 5.24
629 635 2.916716 CCATGAAACTTTATGCACGCAC 59.083 45.455 0.00 0.00 0.00 5.34
630 636 3.563508 CATGAAACTTTATGCACGCACA 58.436 40.909 0.00 0.00 0.00 4.57
631 637 3.913548 TGAAACTTTATGCACGCACAT 57.086 38.095 0.00 0.00 0.00 3.21
632 638 5.331098 CATGAAACTTTATGCACGCACATA 58.669 37.500 0.00 0.00 0.00 2.29
633 639 4.968626 TGAAACTTTATGCACGCACATAG 58.031 39.130 0.00 0.00 34.15 2.23
634 640 4.693095 TGAAACTTTATGCACGCACATAGA 59.307 37.500 0.00 0.00 34.15 1.98
635 641 5.180304 TGAAACTTTATGCACGCACATAGAA 59.820 36.000 0.00 0.00 34.15 2.10
636 642 4.600012 ACTTTATGCACGCACATAGAAC 57.400 40.909 0.00 0.00 34.15 3.01
637 643 4.000325 ACTTTATGCACGCACATAGAACA 59.000 39.130 0.00 0.00 34.15 3.18
638 644 4.635765 ACTTTATGCACGCACATAGAACAT 59.364 37.500 0.00 0.00 34.15 2.71
639 645 4.534794 TTATGCACGCACATAGAACATG 57.465 40.909 0.00 0.00 34.15 3.21
640 646 2.091852 TGCACGCACATAGAACATGA 57.908 45.000 0.00 0.00 0.00 3.07
641 647 2.421619 TGCACGCACATAGAACATGAA 58.578 42.857 0.00 0.00 0.00 2.57
642 648 2.416202 TGCACGCACATAGAACATGAAG 59.584 45.455 0.00 0.00 0.00 3.02
643 649 2.672874 GCACGCACATAGAACATGAAGA 59.327 45.455 0.00 0.00 0.00 2.87
644 650 3.484229 GCACGCACATAGAACATGAAGAC 60.484 47.826 0.00 0.00 0.00 3.01
645 651 2.923655 ACGCACATAGAACATGAAGACG 59.076 45.455 0.00 0.00 0.00 4.18
646 652 2.923655 CGCACATAGAACATGAAGACGT 59.076 45.455 0.00 0.00 0.00 4.34
647 653 4.102649 CGCACATAGAACATGAAGACGTA 58.897 43.478 0.00 0.00 0.00 3.57
648 654 4.027621 CGCACATAGAACATGAAGACGTAC 60.028 45.833 0.00 0.00 0.00 3.67
649 655 4.027621 GCACATAGAACATGAAGACGTACG 60.028 45.833 15.01 15.01 0.00 3.67
650 656 4.027621 CACATAGAACATGAAGACGTACGC 60.028 45.833 16.72 8.42 0.00 4.42
651 657 1.614385 AGAACATGAAGACGTACGCG 58.386 50.000 16.72 3.53 44.93 6.01
724 730 3.782656 GGGTTCATATGTACCCGGATT 57.217 47.619 28.62 0.00 44.05 3.01
725 731 3.671716 GGGTTCATATGTACCCGGATTC 58.328 50.000 28.62 10.23 44.05 2.52
726 732 3.071892 GGGTTCATATGTACCCGGATTCA 59.928 47.826 28.62 0.00 44.05 2.57
727 733 4.263331 GGGTTCATATGTACCCGGATTCAT 60.263 45.833 28.62 0.00 44.05 2.57
728 734 5.313712 GGTTCATATGTACCCGGATTCATT 58.686 41.667 18.28 0.00 30.30 2.57
729 735 5.411669 GGTTCATATGTACCCGGATTCATTC 59.588 44.000 18.28 0.00 30.30 2.67
730 736 5.816955 TCATATGTACCCGGATTCATTCA 57.183 39.130 0.73 0.00 0.00 2.57
731 737 6.373005 TCATATGTACCCGGATTCATTCAT 57.627 37.500 0.73 0.35 0.00 2.57
732 738 6.172630 TCATATGTACCCGGATTCATTCATG 58.827 40.000 0.73 0.00 0.00 3.07
733 739 2.571212 TGTACCCGGATTCATTCATGC 58.429 47.619 0.73 0.00 0.00 4.06
734 740 2.092699 TGTACCCGGATTCATTCATGCA 60.093 45.455 0.73 0.00 0.00 3.96
735 741 1.392589 ACCCGGATTCATTCATGCAC 58.607 50.000 0.73 0.00 0.00 4.57
736 742 1.064463 ACCCGGATTCATTCATGCACT 60.064 47.619 0.73 0.00 0.00 4.40
737 743 2.026641 CCCGGATTCATTCATGCACTT 58.973 47.619 0.73 0.00 0.00 3.16
738 744 2.033801 CCCGGATTCATTCATGCACTTC 59.966 50.000 0.73 0.00 0.00 3.01
739 745 2.947652 CCGGATTCATTCATGCACTTCT 59.052 45.455 0.00 0.00 0.00 2.85
740 746 3.003068 CCGGATTCATTCATGCACTTCTC 59.997 47.826 0.00 0.00 0.00 2.87
741 747 3.003068 CGGATTCATTCATGCACTTCTCC 59.997 47.826 0.00 0.00 0.00 3.71
742 748 4.205587 GGATTCATTCATGCACTTCTCCT 58.794 43.478 0.00 0.00 0.00 3.69
743 749 5.371526 GGATTCATTCATGCACTTCTCCTA 58.628 41.667 0.00 0.00 0.00 2.94
744 750 6.002704 GGATTCATTCATGCACTTCTCCTAT 58.997 40.000 0.00 0.00 0.00 2.57
826 833 4.439153 CGTCCATGAAGGTGAAATTGATGG 60.439 45.833 0.00 0.00 41.26 3.51
851 858 0.874607 CCATTACCACTACCGCTCGC 60.875 60.000 0.00 0.00 0.00 5.03
852 859 1.065273 ATTACCACTACCGCTCGCG 59.935 57.895 0.00 0.00 39.44 5.87
853 860 1.378882 ATTACCACTACCGCTCGCGA 61.379 55.000 9.26 9.26 42.83 5.87
854 861 1.378882 TTACCACTACCGCTCGCGAT 61.379 55.000 10.36 0.00 42.83 4.58
855 862 1.779025 TACCACTACCGCTCGCGATC 61.779 60.000 10.36 3.96 42.83 3.69
856 863 2.722548 CACTACCGCTCGCGATCG 60.723 66.667 24.17 24.17 42.83 3.69
878 885 4.025396 CGTACACGTACCTCATAGTACCAG 60.025 50.000 1.86 0.00 39.60 4.00
908 921 7.766278 ACACCTCCATATATAAATGAATCGAGC 59.234 37.037 0.00 0.00 0.00 5.03
978 991 3.277652 TGCAAGCAAGCAAGAAAGC 57.722 47.368 0.17 0.00 42.46 3.51
984 997 1.811359 AGCAAGCAAGAAAGCAGCTAG 59.189 47.619 0.00 0.00 43.25 3.42
1098 1111 3.519930 GTCGCGGAGGAGGAGGAC 61.520 72.222 6.13 0.00 0.00 3.85
1105 1130 4.361971 AGGAGGAGGACGACGGCA 62.362 66.667 1.63 0.00 0.00 5.69
1413 1438 3.392616 AGAAGCTCTTCCTGGTCAAGAAA 59.607 43.478 6.04 0.00 40.33 2.52
1425 1450 1.066143 GTCAAGAAATCCAGGAGCGGA 60.066 52.381 0.00 0.00 40.07 5.54
1449 1474 0.647410 CCGCGTCAATCTGATCACAC 59.353 55.000 4.92 0.00 0.00 3.82
1502 1527 2.680913 GGTGCGGTGCATCAGTCAC 61.681 63.158 0.00 1.49 41.91 3.67
1530 1555 6.330278 TCAGTAGTGTGTGCATAGTTGATAC 58.670 40.000 0.00 0.00 0.00 2.24
1531 1556 6.152831 TCAGTAGTGTGTGCATAGTTGATACT 59.847 38.462 0.00 0.00 38.44 2.12
1532 1557 7.338449 TCAGTAGTGTGTGCATAGTTGATACTA 59.662 37.037 0.00 0.00 40.96 1.82
1606 1631 5.473504 TCTTTTTGGCTGAAGAGTGTATTCC 59.526 40.000 0.00 0.00 0.00 3.01
1688 1716 6.639279 CCCAACTACAAACAATAGTTTTTCCG 59.361 38.462 0.00 0.00 45.32 4.30
1710 1738 5.973565 CCGTCAGAATCATCTAAATTTTGGC 59.026 40.000 0.00 0.00 33.50 4.52
1771 1799 4.720773 AGGATGACTGAGATCACAATTCCT 59.279 41.667 0.00 1.72 32.05 3.36
1787 1817 2.099141 TCCTTGGACATTGCTCTTCG 57.901 50.000 0.00 0.00 0.00 3.79
1788 1818 1.089920 CCTTGGACATTGCTCTTCGG 58.910 55.000 0.00 0.00 0.00 4.30
1791 1821 3.334691 CTTGGACATTGCTCTTCGGTTA 58.665 45.455 0.00 0.00 0.00 2.85
1843 1873 2.998670 TGTGTTGGCAATTGTGTTGTTG 59.001 40.909 1.92 0.00 0.00 3.33
1880 1910 0.675633 GCATGGCAAAGGTTGTCTGT 59.324 50.000 0.00 0.00 35.94 3.41
1921 1957 1.153086 GCATCGCCATCAGGAACCT 60.153 57.895 0.00 0.00 36.89 3.50
1972 2008 0.034756 CCGTCACCAACATCTCCACA 59.965 55.000 0.00 0.00 0.00 4.17
2028 2064 6.404074 CCAAAGTCTCCAGCTTCATAAATGTC 60.404 42.308 0.00 0.00 0.00 3.06
2052 2088 4.097714 CACTTAACAACACACTGCAACAG 58.902 43.478 0.00 0.00 37.52 3.16
2056 2093 0.170784 CAACACACTGCAACAGCACA 59.829 50.000 0.00 0.00 34.37 4.57
2057 2094 0.171007 AACACACTGCAACAGCACAC 59.829 50.000 0.00 0.00 34.37 3.82
2058 2095 0.677731 ACACACTGCAACAGCACACT 60.678 50.000 0.00 0.00 34.37 3.55
2059 2096 0.028505 CACACTGCAACAGCACACTC 59.971 55.000 0.00 0.00 34.37 3.51
2100 2137 4.078980 ACCATTCTGCCAATTAGGGATCTT 60.079 41.667 0.00 0.00 36.98 2.40
2101 2138 5.134339 ACCATTCTGCCAATTAGGGATCTTA 59.866 40.000 0.00 0.00 36.98 2.10
2102 2139 6.183361 ACCATTCTGCCAATTAGGGATCTTAT 60.183 38.462 0.00 0.00 36.98 1.73
2107 2144 8.868522 TCTGCCAATTAGGGATCTTATTATTG 57.131 34.615 0.00 0.00 36.98 1.90
2151 2198 1.379527 TGATCTTGCTCTGCATGCTG 58.620 50.000 20.33 18.97 38.76 4.41
2158 2205 3.997400 CTCTGCATGCTGCTGGCCT 62.997 63.158 20.33 0.00 45.31 5.19
2212 2259 5.282055 TGCTACCTATTGTCCTGATCAAG 57.718 43.478 0.00 0.00 0.00 3.02
2311 2358 9.710818 TCATAGTACATAACTCCCTTAGAAAGT 57.289 33.333 0.00 0.00 39.80 2.66
2313 2360 9.710818 ATAGTACATAACTCCCTTAGAAAGTCA 57.289 33.333 0.00 0.00 39.80 3.41
2331 2378 7.442666 AGAAAGTCACTTTGATCAAGACCTTAC 59.557 37.037 7.75 9.82 33.49 2.34
2345 2394 6.761714 TCAAGACCTTACAAGTGAGACTTTTC 59.238 38.462 0.00 0.00 36.03 2.29
2346 2395 6.487299 AGACCTTACAAGTGAGACTTTTCT 57.513 37.500 0.00 0.00 36.03 2.52
2349 2398 4.757149 CCTTACAAGTGAGACTTTTCTGGG 59.243 45.833 0.00 0.00 36.03 4.45
2393 2442 1.384989 CGGTCACGATCTGGCCTACT 61.385 60.000 3.32 0.00 43.39 2.57
2403 2452 0.251354 CTGGCCTACTCATGCAGTGT 59.749 55.000 3.32 0.00 36.43 3.55
2408 2457 2.783135 CCTACTCATGCAGTGTTGGTT 58.217 47.619 0.00 0.00 36.43 3.67
2411 2460 1.949525 ACTCATGCAGTGTTGGTTGTC 59.050 47.619 0.00 0.00 32.26 3.18
2412 2461 2.224606 CTCATGCAGTGTTGGTTGTCT 58.775 47.619 0.00 0.00 0.00 3.41
2413 2462 1.948834 TCATGCAGTGTTGGTTGTCTG 59.051 47.619 0.00 0.00 0.00 3.51
2414 2463 1.677576 CATGCAGTGTTGGTTGTCTGT 59.322 47.619 0.00 0.00 0.00 3.41
2415 2464 1.093972 TGCAGTGTTGGTTGTCTGTG 58.906 50.000 0.00 0.00 0.00 3.66
2416 2465 1.339535 TGCAGTGTTGGTTGTCTGTGA 60.340 47.619 0.00 0.00 0.00 3.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.651576 TGCAGTAATGCAAACCATCAATAGA 59.348 36.000 16.64 0.00 42.40 1.98
1 2 5.893687 TGCAGTAATGCAAACCATCAATAG 58.106 37.500 16.64 0.00 42.40 1.73
2 3 5.911378 TGCAGTAATGCAAACCATCAATA 57.089 34.783 16.64 0.00 42.40 1.90
3 4 4.804868 TGCAGTAATGCAAACCATCAAT 57.195 36.364 16.64 0.00 42.40 2.57
10 11 7.564194 ACTCAGAGAGATGCAGTAATGCAAAC 61.564 42.308 22.94 18.03 39.56 2.93
11 12 5.570236 ACTCAGAGAGATGCAGTAATGCAAA 60.570 40.000 22.94 0.00 39.56 3.68
12 13 4.081254 ACTCAGAGAGATGCAGTAATGCAA 60.081 41.667 22.94 5.84 39.56 4.08
13 14 3.450096 ACTCAGAGAGATGCAGTAATGCA 59.550 43.478 21.35 21.35 40.03 3.96
14 15 4.057406 ACTCAGAGAGATGCAGTAATGC 57.943 45.455 8.51 8.51 33.32 3.56
15 16 8.659925 AAAATACTCAGAGAGATGCAGTAATG 57.340 34.615 3.79 0.00 33.32 1.90
104 105 9.677567 GCTTGAACAAGTTTACATAGAATCAAA 57.322 29.630 14.62 0.00 40.45 2.69
105 106 9.066892 AGCTTGAACAAGTTTACATAGAATCAA 57.933 29.630 14.62 0.00 40.45 2.57
106 107 8.621532 AGCTTGAACAAGTTTACATAGAATCA 57.378 30.769 14.62 0.00 40.45 2.57
107 108 9.334693 CAAGCTTGAACAAGTTTACATAGAATC 57.665 33.333 22.31 0.00 39.34 2.52
108 109 9.066892 TCAAGCTTGAACAAGTTTACATAGAAT 57.933 29.630 26.61 0.00 39.34 2.40
109 110 8.445275 TCAAGCTTGAACAAGTTTACATAGAA 57.555 30.769 26.61 0.00 39.34 2.10
110 111 8.621532 ATCAAGCTTGAACAAGTTTACATAGA 57.378 30.769 31.55 4.13 39.34 1.98
111 112 8.506437 TGATCAAGCTTGAACAAGTTTACATAG 58.494 33.333 30.39 0.00 39.34 2.23
112 113 8.389779 TGATCAAGCTTGAACAAGTTTACATA 57.610 30.769 30.39 8.97 39.34 2.29
113 114 7.275888 TGATCAAGCTTGAACAAGTTTACAT 57.724 32.000 30.39 12.81 39.34 2.29
114 115 6.691754 TGATCAAGCTTGAACAAGTTTACA 57.308 33.333 30.39 16.95 39.34 2.41
115 116 7.196331 AGTTGATCAAGCTTGAACAAGTTTAC 58.804 34.615 37.59 29.32 45.45 2.01
116 117 7.333528 AGTTGATCAAGCTTGAACAAGTTTA 57.666 32.000 37.59 22.44 45.45 2.01
117 118 6.212888 AGTTGATCAAGCTTGAACAAGTTT 57.787 33.333 37.59 27.05 45.45 2.66
118 119 5.841957 AGTTGATCAAGCTTGAACAAGTT 57.158 34.783 37.59 28.89 45.45 2.66
120 121 4.908156 CGAAGTTGATCAAGCTTGAACAAG 59.092 41.667 37.59 26.80 46.14 3.16
121 122 4.261155 CCGAAGTTGATCAAGCTTGAACAA 60.261 41.667 34.99 34.99 44.30 2.83
122 123 3.250762 CCGAAGTTGATCAAGCTTGAACA 59.749 43.478 31.55 30.32 41.13 3.18
123 124 3.251004 ACCGAAGTTGATCAAGCTTGAAC 59.749 43.478 31.55 28.15 41.13 3.18
124 125 3.250762 CACCGAAGTTGATCAAGCTTGAA 59.749 43.478 31.55 14.87 41.13 2.69
125 126 2.807967 CACCGAAGTTGATCAAGCTTGA 59.192 45.455 30.23 30.23 42.14 3.02
126 127 2.549754 ACACCGAAGTTGATCAAGCTTG 59.450 45.455 20.81 20.81 0.00 4.01
127 128 2.851195 ACACCGAAGTTGATCAAGCTT 58.149 42.857 8.80 14.50 0.00 3.74
128 129 2.550830 ACACCGAAGTTGATCAAGCT 57.449 45.000 8.80 6.56 0.00 3.74
129 130 3.003275 TCAAACACCGAAGTTGATCAAGC 59.997 43.478 8.80 4.22 0.00 4.01
130 131 4.811555 TCAAACACCGAAGTTGATCAAG 57.188 40.909 8.80 0.00 0.00 3.02
131 132 5.298026 TGAATCAAACACCGAAGTTGATCAA 59.702 36.000 3.38 3.38 0.00 2.57
132 133 4.819088 TGAATCAAACACCGAAGTTGATCA 59.181 37.500 0.00 0.00 0.00 2.92
133 134 5.356882 TGAATCAAACACCGAAGTTGATC 57.643 39.130 0.00 0.00 0.00 2.92
134 135 5.507315 GGTTGAATCAAACACCGAAGTTGAT 60.507 40.000 6.09 0.00 30.47 2.57
135 136 4.201970 GGTTGAATCAAACACCGAAGTTGA 60.202 41.667 6.09 0.00 30.47 3.18
136 137 4.041723 GGTTGAATCAAACACCGAAGTTG 58.958 43.478 6.09 0.00 30.47 3.16
137 138 3.067601 GGGTTGAATCAAACACCGAAGTT 59.932 43.478 13.49 0.00 31.89 2.66
138 139 2.621526 GGGTTGAATCAAACACCGAAGT 59.378 45.455 13.49 0.00 31.89 3.01
139 140 2.621055 TGGGTTGAATCAAACACCGAAG 59.379 45.455 13.49 0.00 31.89 3.79
140 141 2.359531 GTGGGTTGAATCAAACACCGAA 59.640 45.455 13.49 0.00 31.89 4.30
141 142 1.950909 GTGGGTTGAATCAAACACCGA 59.049 47.619 13.49 0.00 31.89 4.69
142 143 1.953686 AGTGGGTTGAATCAAACACCG 59.046 47.619 20.91 0.00 35.52 4.94
143 144 2.955660 TCAGTGGGTTGAATCAAACACC 59.044 45.455 20.91 14.01 35.52 4.16
144 145 3.243401 GGTCAGTGGGTTGAATCAAACAC 60.243 47.826 13.49 16.46 31.89 3.32
145 146 2.955660 GGTCAGTGGGTTGAATCAAACA 59.044 45.455 13.49 5.50 31.89 2.83
146 147 2.955660 TGGTCAGTGGGTTGAATCAAAC 59.044 45.455 1.70 1.70 0.00 2.93
147 148 3.221771 CTGGTCAGTGGGTTGAATCAAA 58.778 45.455 0.00 0.00 0.00 2.69
148 149 2.862541 CTGGTCAGTGGGTTGAATCAA 58.137 47.619 0.00 0.00 0.00 2.57
149 150 1.545428 GCTGGTCAGTGGGTTGAATCA 60.545 52.381 0.00 0.00 0.00 2.57
150 151 1.168714 GCTGGTCAGTGGGTTGAATC 58.831 55.000 0.00 0.00 0.00 2.52
151 152 0.773644 AGCTGGTCAGTGGGTTGAAT 59.226 50.000 0.00 0.00 0.00 2.57
152 153 0.550914 AAGCTGGTCAGTGGGTTGAA 59.449 50.000 0.00 0.00 0.00 2.69
153 154 0.550914 AAAGCTGGTCAGTGGGTTGA 59.449 50.000 0.00 0.00 0.00 3.18
154 155 1.338020 GAAAAGCTGGTCAGTGGGTTG 59.662 52.381 0.00 0.00 0.00 3.77
155 156 1.692411 GAAAAGCTGGTCAGTGGGTT 58.308 50.000 0.00 0.00 0.00 4.11
156 157 0.178990 GGAAAAGCTGGTCAGTGGGT 60.179 55.000 0.00 0.00 0.00 4.51
157 158 0.895559 GGGAAAAGCTGGTCAGTGGG 60.896 60.000 0.00 0.00 0.00 4.61
158 159 0.178992 TGGGAAAAGCTGGTCAGTGG 60.179 55.000 0.00 0.00 0.00 4.00
159 160 0.954452 GTGGGAAAAGCTGGTCAGTG 59.046 55.000 0.00 0.00 0.00 3.66
160 161 0.178990 GGTGGGAAAAGCTGGTCAGT 60.179 55.000 0.00 0.00 0.00 3.41
161 162 0.895559 GGGTGGGAAAAGCTGGTCAG 60.896 60.000 0.00 0.00 0.00 3.51
162 163 1.152830 GGGTGGGAAAAGCTGGTCA 59.847 57.895 0.00 0.00 0.00 4.02
163 164 1.971695 CGGGTGGGAAAAGCTGGTC 60.972 63.158 0.00 0.00 0.00 4.02
164 165 2.115266 CGGGTGGGAAAAGCTGGT 59.885 61.111 0.00 0.00 0.00 4.00
165 166 3.373565 GCGGGTGGGAAAAGCTGG 61.374 66.667 0.00 0.00 0.00 4.85
166 167 1.535204 ATTGCGGGTGGGAAAAGCTG 61.535 55.000 0.00 0.00 0.00 4.24
167 168 0.039035 TATTGCGGGTGGGAAAAGCT 59.961 50.000 0.00 0.00 0.00 3.74
168 169 0.455815 CTATTGCGGGTGGGAAAAGC 59.544 55.000 0.00 0.00 0.00 3.51
169 170 0.455815 GCTATTGCGGGTGGGAAAAG 59.544 55.000 0.00 0.00 0.00 2.27
170 171 0.039035 AGCTATTGCGGGTGGGAAAA 59.961 50.000 0.00 0.00 45.42 2.29
171 172 0.039035 AAGCTATTGCGGGTGGGAAA 59.961 50.000 0.00 0.00 45.42 3.13
172 173 0.913205 TAAGCTATTGCGGGTGGGAA 59.087 50.000 0.00 0.00 45.42 3.97
173 174 0.179468 GTAAGCTATTGCGGGTGGGA 59.821 55.000 0.00 0.00 45.42 4.37
174 175 0.180406 AGTAAGCTATTGCGGGTGGG 59.820 55.000 0.00 0.00 45.42 4.61
175 176 1.299541 CAGTAAGCTATTGCGGGTGG 58.700 55.000 0.00 0.00 45.42 4.61
176 177 1.933853 GACAGTAAGCTATTGCGGGTG 59.066 52.381 0.00 0.00 45.42 4.61
177 178 1.553248 TGACAGTAAGCTATTGCGGGT 59.447 47.619 0.00 0.00 45.42 5.28
178 179 2.309528 TGACAGTAAGCTATTGCGGG 57.690 50.000 0.00 0.00 45.42 6.13
179 180 3.262420 AGTTGACAGTAAGCTATTGCGG 58.738 45.455 0.00 0.00 45.42 5.69
180 181 4.928661 AAGTTGACAGTAAGCTATTGCG 57.071 40.909 0.00 0.00 45.42 4.85
181 182 5.107065 ACGAAAGTTGACAGTAAGCTATTGC 60.107 40.000 0.00 0.00 46.40 3.56
182 183 6.467723 ACGAAAGTTGACAGTAAGCTATTG 57.532 37.500 0.00 0.00 46.40 1.90
212 213 0.758123 CAGGGGATCAAGCTCTCTCC 59.242 60.000 2.30 2.30 0.00 3.71
213 214 0.758123 CCAGGGGATCAAGCTCTCTC 59.242 60.000 0.00 0.00 0.00 3.20
214 215 0.341258 TCCAGGGGATCAAGCTCTCT 59.659 55.000 0.00 0.00 0.00 3.10
215 216 1.134250 GTTCCAGGGGATCAAGCTCTC 60.134 57.143 0.00 0.00 0.00 3.20
216 217 0.915364 GTTCCAGGGGATCAAGCTCT 59.085 55.000 0.00 0.00 0.00 4.09
222 228 1.910580 GCTTCCGTTCCAGGGGATCA 61.911 60.000 0.00 0.00 31.11 2.92
256 262 1.077572 ATGCGGTGATGATGTGCCA 60.078 52.632 0.00 0.00 0.00 4.92
338 344 1.626356 GGTGCCCTCTCTGGTGCATA 61.626 60.000 0.00 0.00 41.58 3.14
340 346 3.640407 GGTGCCCTCTCTGGTGCA 61.640 66.667 0.00 0.00 38.87 4.57
341 347 2.883267 GATGGTGCCCTCTCTGGTGC 62.883 65.000 0.00 0.00 34.13 5.01
342 348 1.222936 GATGGTGCCCTCTCTGGTG 59.777 63.158 0.00 0.00 0.00 4.17
343 349 1.081833 AGATGGTGCCCTCTCTGGT 59.918 57.895 0.00 0.00 0.00 4.00
344 350 0.979709 TCAGATGGTGCCCTCTCTGG 60.980 60.000 16.56 0.00 35.90 3.86
345 351 0.907486 TTCAGATGGTGCCCTCTCTG 59.093 55.000 13.31 13.31 36.25 3.35
346 352 0.908198 GTTCAGATGGTGCCCTCTCT 59.092 55.000 0.00 0.00 0.00 3.10
347 353 0.107459 GGTTCAGATGGTGCCCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
348 354 1.566298 GGGTTCAGATGGTGCCCTCT 61.566 60.000 0.00 0.00 36.49 3.69
349 355 1.077429 GGGTTCAGATGGTGCCCTC 60.077 63.158 0.00 0.00 36.49 4.30
350 356 1.217057 ATGGGTTCAGATGGTGCCCT 61.217 55.000 0.00 0.00 39.97 5.19
351 357 1.039233 CATGGGTTCAGATGGTGCCC 61.039 60.000 0.00 0.00 39.73 5.36
352 358 1.039233 CCATGGGTTCAGATGGTGCC 61.039 60.000 2.85 0.00 35.33 5.01
353 359 1.039233 CCCATGGGTTCAGATGGTGC 61.039 60.000 23.93 0.00 37.96 5.01
354 360 1.039233 GCCCATGGGTTCAGATGGTG 61.039 60.000 31.58 2.09 37.96 4.17
355 361 1.307647 GCCCATGGGTTCAGATGGT 59.692 57.895 31.58 0.00 37.96 3.55
356 362 0.105862 ATGCCCATGGGTTCAGATGG 60.106 55.000 31.58 3.44 39.18 3.51
357 363 2.662535 TATGCCCATGGGTTCAGATG 57.337 50.000 31.58 4.22 37.65 2.90
358 364 2.820485 GCATATGCCCATGGGTTCAGAT 60.820 50.000 31.58 20.71 37.65 2.90
359 365 1.479205 GCATATGCCCATGGGTTCAGA 60.479 52.381 31.58 19.37 37.65 3.27
360 366 0.963962 GCATATGCCCATGGGTTCAG 59.036 55.000 31.58 18.29 37.65 3.02
361 367 0.261109 TGCATATGCCCATGGGTTCA 59.739 50.000 31.58 21.99 41.18 3.18
362 368 0.675633 GTGCATATGCCCATGGGTTC 59.324 55.000 31.58 16.76 41.18 3.62
363 369 0.760189 GGTGCATATGCCCATGGGTT 60.760 55.000 31.58 21.23 41.18 4.11
364 370 1.152483 GGTGCATATGCCCATGGGT 60.152 57.895 31.58 15.92 41.18 4.51
365 371 1.909781 GGGTGCATATGCCCATGGG 60.910 63.158 27.87 27.87 44.23 4.00
366 372 3.781760 GGGTGCATATGCCCATGG 58.218 61.111 26.58 4.14 44.23 3.66
370 376 1.136891 GAAAAGTGGGTGCATATGCCC 59.863 52.381 24.54 22.41 45.04 5.36
371 377 1.824230 TGAAAAGTGGGTGCATATGCC 59.176 47.619 24.54 15.25 41.18 4.40
372 378 3.806625 ATGAAAAGTGGGTGCATATGC 57.193 42.857 21.09 21.09 42.50 3.14
373 379 7.254522 GCATTTTATGAAAAGTGGGTGCATATG 60.255 37.037 0.00 0.00 34.00 1.78
374 380 6.762661 GCATTTTATGAAAAGTGGGTGCATAT 59.237 34.615 0.00 0.00 34.00 1.78
375 381 6.105333 GCATTTTATGAAAAGTGGGTGCATA 58.895 36.000 0.00 0.00 34.00 3.14
376 382 4.937015 GCATTTTATGAAAAGTGGGTGCAT 59.063 37.500 0.00 0.00 34.00 3.96
377 383 4.202295 TGCATTTTATGAAAAGTGGGTGCA 60.202 37.500 3.38 3.38 34.00 4.57
378 384 4.314121 TGCATTTTATGAAAAGTGGGTGC 58.686 39.130 0.00 0.00 34.00 5.01
379 385 7.437793 AAATGCATTTTATGAAAAGTGGGTG 57.562 32.000 18.99 0.00 34.00 4.61
380 386 9.566432 TTAAAATGCATTTTATGAAAAGTGGGT 57.434 25.926 33.89 14.58 40.65 4.51
382 388 9.545611 GCTTAAAATGCATTTTATGAAAAGTGG 57.454 29.630 37.21 22.71 40.65 4.00
385 391 9.253275 CGTGCTTAAAATGCATTTTATGAAAAG 57.747 29.630 37.21 31.79 40.65 2.27
386 392 8.768955 ACGTGCTTAAAATGCATTTTATGAAAA 58.231 25.926 37.21 26.65 40.65 2.29
387 393 8.304202 ACGTGCTTAAAATGCATTTTATGAAA 57.696 26.923 37.21 28.04 40.65 2.69
388 394 7.881643 ACGTGCTTAAAATGCATTTTATGAA 57.118 28.000 37.21 31.35 40.65 2.57
389 395 7.881643 AACGTGCTTAAAATGCATTTTATGA 57.118 28.000 37.21 26.54 40.65 2.15
390 396 8.931905 AAAACGTGCTTAAAATGCATTTTATG 57.068 26.923 33.89 33.38 40.65 1.90
393 399 9.774742 TTTAAAAACGTGCTTAAAATGCATTTT 57.225 22.222 33.26 33.26 42.69 1.82
394 400 9.943163 ATTTAAAAACGTGCTTAAAATGCATTT 57.057 22.222 18.99 18.99 42.69 2.32
395 401 9.379811 CATTTAAAAACGTGCTTAAAATGCATT 57.620 25.926 5.99 5.99 42.69 3.56
396 402 8.555361 ACATTTAAAAACGTGCTTAAAATGCAT 58.445 25.926 15.20 0.00 42.69 3.96
397 403 7.910304 ACATTTAAAAACGTGCTTAAAATGCA 58.090 26.923 15.20 0.00 38.19 3.96
398 404 8.760703 AACATTTAAAAACGTGCTTAAAATGC 57.239 26.923 15.20 0.00 32.37 3.56
424 430 9.474920 TGCGTGATATTTTCTTTTGATTTCTTT 57.525 25.926 0.00 0.00 0.00 2.52
425 431 9.643693 ATGCGTGATATTTTCTTTTGATTTCTT 57.356 25.926 0.00 0.00 0.00 2.52
428 434 9.853555 TGTATGCGTGATATTTTCTTTTGATTT 57.146 25.926 0.00 0.00 0.00 2.17
430 436 9.454585 CATGTATGCGTGATATTTTCTTTTGAT 57.545 29.630 0.00 0.00 33.58 2.57
431 437 8.458052 ACATGTATGCGTGATATTTTCTTTTGA 58.542 29.630 10.22 0.00 35.65 2.69
432 438 8.619146 ACATGTATGCGTGATATTTTCTTTTG 57.381 30.769 10.22 0.00 35.65 2.44
433 439 9.289303 GAACATGTATGCGTGATATTTTCTTTT 57.711 29.630 10.22 0.00 35.65 2.27
434 440 7.639850 CGAACATGTATGCGTGATATTTTCTTT 59.360 33.333 10.22 0.00 35.65 2.52
435 441 7.125755 CGAACATGTATGCGTGATATTTTCTT 58.874 34.615 10.22 0.00 35.65 2.52
436 442 6.649436 CGAACATGTATGCGTGATATTTTCT 58.351 36.000 10.22 0.00 35.65 2.52
437 443 5.336990 GCGAACATGTATGCGTGATATTTTC 59.663 40.000 10.22 2.14 35.65 2.29
438 444 5.204833 GCGAACATGTATGCGTGATATTTT 58.795 37.500 10.22 0.00 35.65 1.82
439 445 4.272261 TGCGAACATGTATGCGTGATATTT 59.728 37.500 10.22 0.00 35.65 1.40
440 446 3.807071 TGCGAACATGTATGCGTGATATT 59.193 39.130 10.22 0.00 35.65 1.28
441 447 3.389221 TGCGAACATGTATGCGTGATAT 58.611 40.909 10.22 0.00 35.65 1.63
442 448 2.815478 TGCGAACATGTATGCGTGATA 58.185 42.857 10.22 0.00 35.65 2.15
443 449 1.650825 TGCGAACATGTATGCGTGAT 58.349 45.000 10.22 0.00 35.65 3.06
444 450 1.433534 TTGCGAACATGTATGCGTGA 58.566 45.000 10.22 4.03 35.65 4.35
445 451 1.904412 GTTTGCGAACATGTATGCGTG 59.096 47.619 12.16 0.95 35.79 5.34
446 452 1.463363 CGTTTGCGAACATGTATGCGT 60.463 47.619 16.98 0.00 41.33 5.24
447 453 1.171052 CGTTTGCGAACATGTATGCG 58.829 50.000 16.98 12.72 41.33 4.73
448 454 1.904412 CACGTTTGCGAACATGTATGC 59.096 47.619 16.98 13.70 42.00 3.14
449 455 2.901873 CACACGTTTGCGAACATGTATG 59.098 45.455 17.58 3.87 39.90 2.39
450 456 2.546368 ACACACGTTTGCGAACATGTAT 59.454 40.909 17.58 4.48 39.90 2.29
451 457 1.934525 ACACACGTTTGCGAACATGTA 59.065 42.857 17.58 0.00 39.90 2.29
452 458 0.730265 ACACACGTTTGCGAACATGT 59.270 45.000 12.67 12.67 42.36 3.21
453 459 2.294829 GTACACACGTTTGCGAACATG 58.705 47.619 16.98 14.19 42.00 3.21
454 460 1.071107 CGTACACACGTTTGCGAACAT 60.071 47.619 16.98 0.00 43.31 2.71
455 461 0.298115 CGTACACACGTTTGCGAACA 59.702 50.000 16.98 0.00 43.31 3.18
456 462 3.032828 CGTACACACGTTTGCGAAC 57.967 52.632 6.77 6.77 43.31 3.95
467 473 1.090625 AACTTTGTGCCGCGTACACA 61.091 50.000 23.40 23.40 45.90 3.72
468 474 0.028374 AAACTTTGTGCCGCGTACAC 59.972 50.000 19.30 19.30 38.55 2.90
469 475 0.733729 AAAACTTTGTGCCGCGTACA 59.266 45.000 4.92 7.41 0.00 2.90
470 476 2.666836 TAAAACTTTGTGCCGCGTAC 57.333 45.000 4.92 4.39 0.00 3.67
471 477 2.806818 TCATAAAACTTTGTGCCGCGTA 59.193 40.909 4.92 0.00 30.49 4.42
472 478 1.604755 TCATAAAACTTTGTGCCGCGT 59.395 42.857 4.92 0.00 30.49 6.01
473 479 2.323939 TCATAAAACTTTGTGCCGCG 57.676 45.000 0.00 0.00 30.49 6.46
474 480 5.396750 TTTTTCATAAAACTTTGTGCCGC 57.603 34.783 0.00 0.00 30.49 6.53
493 499 7.020602 CGAAGGCAAAACAAAAAGACATTTTT 58.979 30.769 0.00 0.00 46.97 1.94
494 500 6.541969 CGAAGGCAAAACAAAAAGACATTTT 58.458 32.000 0.00 0.00 41.93 1.82
495 501 5.447144 GCGAAGGCAAAACAAAAAGACATTT 60.447 36.000 0.00 0.00 39.62 2.32
496 502 4.033932 GCGAAGGCAAAACAAAAAGACATT 59.966 37.500 0.00 0.00 39.62 2.71
497 503 3.555547 GCGAAGGCAAAACAAAAAGACAT 59.444 39.130 0.00 0.00 39.62 3.06
498 504 2.926838 GCGAAGGCAAAACAAAAAGACA 59.073 40.909 0.00 0.00 39.62 3.41
499 505 3.569304 GCGAAGGCAAAACAAAAAGAC 57.431 42.857 0.00 0.00 39.62 3.01
521 527 9.651913 TTTAGAAGCACTGAAATTTGTCTTTTT 57.348 25.926 0.00 0.00 0.00 1.94
522 528 9.822185 ATTTAGAAGCACTGAAATTTGTCTTTT 57.178 25.926 0.00 0.00 0.00 2.27
525 531 9.289782 ACTATTTAGAAGCACTGAAATTTGTCT 57.710 29.630 0.00 0.00 0.00 3.41
526 532 9.334693 CACTATTTAGAAGCACTGAAATTTGTC 57.665 33.333 0.00 0.00 0.00 3.18
527 533 8.850156 ACACTATTTAGAAGCACTGAAATTTGT 58.150 29.630 0.00 0.00 0.00 2.83
528 534 9.683069 AACACTATTTAGAAGCACTGAAATTTG 57.317 29.630 0.00 0.00 0.00 2.32
530 536 9.899226 GAAACACTATTTAGAAGCACTGAAATT 57.101 29.630 0.00 0.00 0.00 1.82
531 537 9.066892 TGAAACACTATTTAGAAGCACTGAAAT 57.933 29.630 0.00 0.00 0.00 2.17
532 538 8.342634 GTGAAACACTATTTAGAAGCACTGAAA 58.657 33.333 0.00 0.00 36.32 2.69
533 539 7.307160 CGTGAAACACTATTTAGAAGCACTGAA 60.307 37.037 0.00 0.00 35.74 3.02
534 540 6.145534 CGTGAAACACTATTTAGAAGCACTGA 59.854 38.462 0.00 0.00 35.74 3.41
535 541 6.145534 TCGTGAAACACTATTTAGAAGCACTG 59.854 38.462 0.00 0.00 35.74 3.66
536 542 6.145696 GTCGTGAAACACTATTTAGAAGCACT 59.854 38.462 0.00 0.00 35.74 4.40
537 543 6.073980 TGTCGTGAAACACTATTTAGAAGCAC 60.074 38.462 0.00 0.00 35.74 4.40
538 544 5.986741 TGTCGTGAAACACTATTTAGAAGCA 59.013 36.000 0.00 0.00 35.74 3.91
539 545 6.462073 TGTCGTGAAACACTATTTAGAAGC 57.538 37.500 0.00 0.00 35.74 3.86
576 582 4.537135 TTTTGTGTGGCCTGTACAAAAA 57.463 36.364 27.56 18.89 45.71 1.94
577 583 4.021016 ACTTTTTGTGTGGCCTGTACAAAA 60.021 37.500 26.73 26.73 46.49 2.44
578 584 3.511934 ACTTTTTGTGTGGCCTGTACAAA 59.488 39.130 20.98 20.98 41.12 2.83
579 585 3.093057 ACTTTTTGTGTGGCCTGTACAA 58.907 40.909 3.32 10.04 32.93 2.41
580 586 2.729194 ACTTTTTGTGTGGCCTGTACA 58.271 42.857 3.32 3.52 0.00 2.90
581 587 3.793797 AACTTTTTGTGTGGCCTGTAC 57.206 42.857 3.32 0.44 0.00 2.90
582 588 6.472686 AAATAACTTTTTGTGTGGCCTGTA 57.527 33.333 3.32 0.00 0.00 2.74
583 589 5.351948 AAATAACTTTTTGTGTGGCCTGT 57.648 34.783 3.32 0.00 0.00 4.00
584 590 6.238347 GGAAAAATAACTTTTTGTGTGGCCTG 60.238 38.462 3.32 0.00 43.02 4.85
585 591 5.820423 GGAAAAATAACTTTTTGTGTGGCCT 59.180 36.000 3.32 0.00 43.02 5.19
586 592 5.586643 TGGAAAAATAACTTTTTGTGTGGCC 59.413 36.000 0.00 0.00 43.02 5.36
587 593 6.670077 TGGAAAAATAACTTTTTGTGTGGC 57.330 33.333 1.11 0.00 43.02 5.01
588 594 8.430801 TCATGGAAAAATAACTTTTTGTGTGG 57.569 30.769 1.11 0.00 43.02 4.17
598 604 9.995003 TGCATAAAGTTTCATGGAAAAATAACT 57.005 25.926 0.00 0.00 33.14 2.24
600 606 8.920665 CGTGCATAAAGTTTCATGGAAAAATAA 58.079 29.630 0.00 0.00 33.14 1.40
601 607 7.062839 GCGTGCATAAAGTTTCATGGAAAAATA 59.937 33.333 0.00 0.00 33.14 1.40
602 608 6.128580 GCGTGCATAAAGTTTCATGGAAAAAT 60.129 34.615 0.00 0.00 33.14 1.82
603 609 5.176590 GCGTGCATAAAGTTTCATGGAAAAA 59.823 36.000 0.00 0.00 33.14 1.94
604 610 4.683781 GCGTGCATAAAGTTTCATGGAAAA 59.316 37.500 0.00 0.00 33.14 2.29
605 611 4.233789 GCGTGCATAAAGTTTCATGGAAA 58.766 39.130 0.00 0.00 0.00 3.13
606 612 3.254411 TGCGTGCATAAAGTTTCATGGAA 59.746 39.130 0.00 0.00 0.00 3.53
607 613 2.816672 TGCGTGCATAAAGTTTCATGGA 59.183 40.909 0.00 0.00 0.00 3.41
608 614 2.916716 GTGCGTGCATAAAGTTTCATGG 59.083 45.455 0.00 0.00 0.00 3.66
609 615 3.563508 TGTGCGTGCATAAAGTTTCATG 58.436 40.909 0.00 0.00 0.00 3.07
610 616 3.913548 TGTGCGTGCATAAAGTTTCAT 57.086 38.095 0.00 0.00 0.00 2.57
611 617 3.913548 ATGTGCGTGCATAAAGTTTCA 57.086 38.095 0.00 0.00 0.00 2.69
612 618 5.216566 TCTATGTGCGTGCATAAAGTTTC 57.783 39.130 0.00 0.00 31.76 2.78
613 619 5.049060 TGTTCTATGTGCGTGCATAAAGTTT 60.049 36.000 0.00 0.00 31.76 2.66
614 620 4.454161 TGTTCTATGTGCGTGCATAAAGTT 59.546 37.500 0.00 0.00 31.76 2.66
615 621 4.000325 TGTTCTATGTGCGTGCATAAAGT 59.000 39.130 0.00 0.00 31.76 2.66
616 622 4.598406 TGTTCTATGTGCGTGCATAAAG 57.402 40.909 0.00 0.00 31.76 1.85
617 623 4.633565 TCATGTTCTATGTGCGTGCATAAA 59.366 37.500 0.00 0.00 31.76 1.40
618 624 4.187694 TCATGTTCTATGTGCGTGCATAA 58.812 39.130 0.00 0.00 31.76 1.90
619 625 3.791245 TCATGTTCTATGTGCGTGCATA 58.209 40.909 0.00 0.00 0.00 3.14
620 626 2.631267 TCATGTTCTATGTGCGTGCAT 58.369 42.857 0.00 0.12 0.00 3.96
621 627 2.091852 TCATGTTCTATGTGCGTGCA 57.908 45.000 0.00 0.00 0.00 4.57
622 628 2.672874 TCTTCATGTTCTATGTGCGTGC 59.327 45.455 0.00 0.00 0.00 5.34
623 629 3.241773 CGTCTTCATGTTCTATGTGCGTG 60.242 47.826 0.00 0.00 0.00 5.34
624 630 2.923655 CGTCTTCATGTTCTATGTGCGT 59.076 45.455 0.00 0.00 0.00 5.24
625 631 2.923655 ACGTCTTCATGTTCTATGTGCG 59.076 45.455 0.00 0.00 0.00 5.34
626 632 4.027621 CGTACGTCTTCATGTTCTATGTGC 60.028 45.833 7.22 0.00 0.00 4.57
627 633 4.027621 GCGTACGTCTTCATGTTCTATGTG 60.028 45.833 17.90 0.00 0.00 3.21
628 634 4.103357 GCGTACGTCTTCATGTTCTATGT 58.897 43.478 17.90 0.00 0.00 2.29
629 635 3.177838 CGCGTACGTCTTCATGTTCTATG 59.822 47.826 17.90 0.00 33.53 2.23
630 636 3.360533 CGCGTACGTCTTCATGTTCTAT 58.639 45.455 17.90 0.00 33.53 1.98
631 637 2.777494 CGCGTACGTCTTCATGTTCTA 58.223 47.619 17.90 0.00 33.53 2.10
632 638 1.614385 CGCGTACGTCTTCATGTTCT 58.386 50.000 17.90 0.00 33.53 3.01
705 711 4.345859 TGAATCCGGGTACATATGAACC 57.654 45.455 10.38 7.31 34.85 3.62
706 712 5.995282 TGAATGAATCCGGGTACATATGAAC 59.005 40.000 10.38 0.00 0.00 3.18
707 713 6.181206 TGAATGAATCCGGGTACATATGAA 57.819 37.500 10.38 0.00 0.00 2.57
708 714 5.816955 TGAATGAATCCGGGTACATATGA 57.183 39.130 10.38 0.00 0.00 2.15
709 715 5.163723 GCATGAATGAATCCGGGTACATATG 60.164 44.000 0.00 0.00 0.00 1.78
710 716 4.943705 GCATGAATGAATCCGGGTACATAT 59.056 41.667 0.00 0.00 0.00 1.78
711 717 4.202409 TGCATGAATGAATCCGGGTACATA 60.202 41.667 0.00 0.00 0.00 2.29
712 718 3.149196 GCATGAATGAATCCGGGTACAT 58.851 45.455 0.00 1.73 0.00 2.29
713 719 2.092699 TGCATGAATGAATCCGGGTACA 60.093 45.455 0.00 0.00 0.00 2.90
714 720 2.290641 GTGCATGAATGAATCCGGGTAC 59.709 50.000 0.00 0.00 0.00 3.34
715 721 2.172505 AGTGCATGAATGAATCCGGGTA 59.827 45.455 0.00 0.00 0.00 3.69
716 722 1.064463 AGTGCATGAATGAATCCGGGT 60.064 47.619 0.00 0.00 0.00 5.28
717 723 1.683943 AGTGCATGAATGAATCCGGG 58.316 50.000 0.00 0.00 0.00 5.73
718 724 2.947652 AGAAGTGCATGAATGAATCCGG 59.052 45.455 0.00 0.00 0.00 5.14
719 725 3.003068 GGAGAAGTGCATGAATGAATCCG 59.997 47.826 0.00 0.00 0.00 4.18
720 726 4.205587 AGGAGAAGTGCATGAATGAATCC 58.794 43.478 0.00 0.00 0.00 3.01
721 727 6.568081 GCATAGGAGAAGTGCATGAATGAATC 60.568 42.308 0.00 0.00 38.68 2.52
722 728 5.241064 GCATAGGAGAAGTGCATGAATGAAT 59.759 40.000 0.00 0.00 38.68 2.57
723 729 4.577693 GCATAGGAGAAGTGCATGAATGAA 59.422 41.667 0.00 0.00 38.68 2.57
724 730 4.132336 GCATAGGAGAAGTGCATGAATGA 58.868 43.478 0.00 0.00 38.68 2.57
725 731 3.881089 TGCATAGGAGAAGTGCATGAATG 59.119 43.478 0.00 0.00 43.30 2.67
726 732 4.160642 TGCATAGGAGAAGTGCATGAAT 57.839 40.909 0.00 0.00 43.30 2.57
727 733 3.632643 TGCATAGGAGAAGTGCATGAA 57.367 42.857 0.00 0.00 43.30 2.57
731 737 0.983467 TGGTGCATAGGAGAAGTGCA 59.017 50.000 0.00 0.00 45.69 4.57
732 738 1.945394 CATGGTGCATAGGAGAAGTGC 59.055 52.381 0.00 0.00 39.26 4.40
733 739 1.945394 GCATGGTGCATAGGAGAAGTG 59.055 52.381 0.00 0.00 44.26 3.16
734 740 2.338577 GCATGGTGCATAGGAGAAGT 57.661 50.000 0.00 0.00 44.26 3.01
783 789 2.019984 GGTGGAACATCCTCATCTTGC 58.980 52.381 0.00 0.00 44.52 4.01
784 790 2.283298 CGGTGGAACATCCTCATCTTG 58.717 52.381 0.00 0.00 44.52 3.02
826 833 2.740904 GCGGTAGTGGTAATGGAGGTTC 60.741 54.545 0.00 0.00 0.00 3.62
851 858 3.492383 ACTATGAGGTACGTGTACGATCG 59.508 47.826 14.88 14.88 43.02 3.69
852 859 5.107298 GGTACTATGAGGTACGTGTACGATC 60.107 48.000 11.79 5.77 41.91 3.69
853 860 4.752101 GGTACTATGAGGTACGTGTACGAT 59.248 45.833 11.79 0.00 41.91 3.73
854 861 4.119862 GGTACTATGAGGTACGTGTACGA 58.880 47.826 11.79 0.00 41.91 3.43
855 862 3.871006 TGGTACTATGAGGTACGTGTACG 59.129 47.826 0.00 2.43 41.91 3.67
856 863 5.007136 GTCTGGTACTATGAGGTACGTGTAC 59.993 48.000 0.00 1.49 41.91 2.90
908 921 2.636519 CGTGTATGTATCTGTCGACCG 58.363 52.381 14.12 6.91 0.00 4.79
990 1003 0.749649 ACTCATCCATGGTCGAGCTC 59.250 55.000 24.31 2.73 0.00 4.09
996 1009 3.691609 GGAAAGTGAACTCATCCATGGTC 59.308 47.826 12.58 0.75 34.10 4.02
1302 1327 4.856607 CGCTTCCTCGCCTCGACC 62.857 72.222 0.00 0.00 0.00 4.79
1303 1328 2.649843 CTACGCTTCCTCGCCTCGAC 62.650 65.000 0.00 0.00 0.00 4.20
1413 1438 1.908483 GGTTCTTCCGCTCCTGGAT 59.092 57.895 0.00 0.00 38.00 3.41
1425 1450 2.271800 GATCAGATTGACGCGGTTCTT 58.728 47.619 12.47 0.00 0.00 2.52
1435 1460 4.682589 GCTCATCTGGTGTGATCAGATTGA 60.683 45.833 0.00 0.00 46.33 2.57
1449 1474 1.829849 TGACTTCTGGAGCTCATCTGG 59.170 52.381 17.19 4.94 0.00 3.86
1502 1527 5.568685 ACTATGCACACACTACTGAGTAG 57.431 43.478 17.61 17.61 41.43 2.57
1606 1631 8.781196 TCAAAACAAGAGAAAGATGATGAAGAG 58.219 33.333 0.00 0.00 0.00 2.85
1610 1635 8.625786 TGATCAAAACAAGAGAAAGATGATGA 57.374 30.769 0.00 0.00 0.00 2.92
1611 1636 9.125906 GTTGATCAAAACAAGAGAAAGATGATG 57.874 33.333 10.35 0.00 0.00 3.07
1612 1637 9.075678 AGTTGATCAAAACAAGAGAAAGATGAT 57.924 29.630 10.35 0.00 32.21 2.45
1679 1707 7.979444 TTTAGATGATTCTGACGGAAAAACT 57.021 32.000 0.00 0.23 37.49 2.66
1688 1716 8.866956 CAAAGCCAAAATTTAGATGATTCTGAC 58.133 33.333 0.00 0.00 33.17 3.51
1771 1799 2.270352 AACCGAAGAGCAATGTCCAA 57.730 45.000 0.00 0.00 0.00 3.53
1791 1821 8.510505 GCTTCAGTCACAAAGAAAGATTAGATT 58.489 33.333 0.00 0.00 0.00 2.40
1843 1873 1.183676 GCTCATCCCATCCCAATGCC 61.184 60.000 0.00 0.00 0.00 4.40
1880 1910 1.204704 CTGCATCTACGAGGTTGGTGA 59.795 52.381 0.00 0.00 0.00 4.02
1921 1957 5.708736 TGAATGGCTCCTTGATTTAGGTA 57.291 39.130 0.00 0.00 36.63 3.08
1972 2008 1.064060 GTTTTCTGCTTCACGTGCTGT 59.936 47.619 11.67 0.00 0.00 4.40
2028 2064 1.063321 TGCAGTGTGTTGTTAAGTGCG 59.937 47.619 0.00 0.00 42.05 5.34
2052 2088 0.610174 TGATGTGAGAGGGAGTGTGC 59.390 55.000 0.00 0.00 0.00 4.57
2100 2137 6.391479 TCATCAGGCATGGGATCAATAATA 57.609 37.500 0.00 0.00 32.64 0.98
2101 2138 5.265290 TCATCAGGCATGGGATCAATAAT 57.735 39.130 0.00 0.00 32.64 1.28
2102 2139 4.727792 TCATCAGGCATGGGATCAATAA 57.272 40.909 0.00 0.00 32.64 1.40
2107 2144 1.174783 GCATCATCAGGCATGGGATC 58.825 55.000 0.00 0.00 32.64 3.36
2151 2198 2.623416 GGGTTATTGTGATTAGGCCAGC 59.377 50.000 5.01 0.00 0.00 4.85
2158 2205 6.390048 TGTTAGGTGGGGTTATTGTGATTA 57.610 37.500 0.00 0.00 0.00 1.75
2255 2302 7.941238 ACTTCTTTGTACTCCAGTAGTGTACTA 59.059 37.037 0.00 0.00 43.05 1.82
2259 2306 5.597182 TGACTTCTTTGTACTCCAGTAGTGT 59.403 40.000 0.00 0.00 39.39 3.55
2260 2307 6.085555 TGACTTCTTTGTACTCCAGTAGTG 57.914 41.667 0.00 0.00 39.39 2.74
2295 2342 7.369551 TCAAAGTGACTTTCTAAGGGAGTTA 57.630 36.000 7.75 0.00 30.60 2.24
2311 2358 6.483307 CACTTGTAAGGTCTTGATCAAAGTGA 59.517 38.462 19.38 8.16 37.18 3.41
2313 2360 6.591935 TCACTTGTAAGGTCTTGATCAAAGT 58.408 36.000 9.88 3.83 37.18 2.66
2331 2378 1.882623 GGCCCAGAAAAGTCTCACTTG 59.117 52.381 0.00 0.00 38.66 3.16
2363 2412 0.662077 TCGTGACCGAACATGTGTCG 60.662 55.000 17.84 17.84 40.86 4.35
2375 2424 0.386113 GAGTAGGCCAGATCGTGACC 59.614 60.000 5.01 0.00 0.00 4.02
2393 2442 1.948834 CAGACAACCAACACTGCATGA 59.051 47.619 0.00 0.00 0.00 3.07
2403 2452 3.537580 GGTTACAGTCACAGACAACCAA 58.462 45.455 11.00 0.00 36.65 3.67
2408 2457 1.338973 GGTCGGTTACAGTCACAGACA 59.661 52.381 16.83 0.00 40.08 3.41
2411 2460 2.223971 ACTTGGTCGGTTACAGTCACAG 60.224 50.000 0.00 0.00 0.00 3.66
2412 2461 1.758280 ACTTGGTCGGTTACAGTCACA 59.242 47.619 0.00 0.00 0.00 3.58
2413 2462 2.132762 CACTTGGTCGGTTACAGTCAC 58.867 52.381 0.00 0.00 0.00 3.67
2414 2463 2.033372 TCACTTGGTCGGTTACAGTCA 58.967 47.619 0.00 0.00 0.00 3.41
2415 2464 2.806608 TCACTTGGTCGGTTACAGTC 57.193 50.000 0.00 0.00 0.00 3.51
2416 2465 2.805657 GCTTCACTTGGTCGGTTACAGT 60.806 50.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.