>input_sequence_80161
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----------------------------------------------------ATGGATGAGTTCACTTTCCCCACTGTCC
CGGGCGGGCAGTGCAAGCTCGCGCCGTTCCCTCCGCCGTGGTTCGTCGCCGCCGTCGCGGAGGAGGAGGACGA-------
-----CGGCAGCAGCGGCTCGCCGAGGGGCCGCGACGAGAGGATGGACATGCTGTGGGAGGACTTCAACGAAGAGCTCGC
GCGCGCGCCGCCGGTGTGCCCTCTCAGCCCCGTGAGCAAGGGGGGCGGGCTGATGGCGATGACGATGATGAAGGAGGCCG
AGTGGTTCTACAGCGACGGCGACGGCGAGGGCGACGACGGCGGTGTGGTCGAGGCGAGGAAGCGTAGTGGCAGTGGCAGG
CACATGGTGGTCCGGCGCCGGAGGTGGAGCCTGCTGCTGATGTTCAGGCTGCTCAAGAAGCTCTTCCTGGTCAAGAAATC
CAGGAGCGGAAGAACCGCGTCAATCTGA----------------------------------------------------
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>chr4A_1_TraesCS4A01G214800
TCTATTGATGGTTTGCATTACTGCATCTCTCTGAGTATTTTATAAAAATCAAAATGTTATATACTATTGTCAATAGAAAT
CAAATTTACTTTATGAACCCAAAATTTGATTCTATGTAAACTTGTTCAAGCTTGATCAACTTCGGTGTTTGATTCAACCC
ACTGACCAGCTTTTCCCACCCGCAATAGCTTACTGTCAACTTTCGTCAGGGGGGAGA-----GAGCTTGATCCCCTGGAA
CGGAAGCAAGTTACCCGTACCTGGCACATCATCACCGCATCATCACTTGCTTAGCCGTCCATCTCTTGAAGCTTAGCTCT
GGCCAACCACAGCAGATAGCACCTATGCACCAGAGAGGGCACCATCTGAACCCATGGGCATATGCACCCACTTTTCATAA
AATGCATTTTAAGCACGTTTTTAAATGTTAAAGAAATCAAAAGAAAATATCACGCATACATGTTCGCAAACGTGTGTACG
CGGCACAAAGTTTTATGAAAAAATGTCTTTTTGTTTTGCCTTCGCAAAAAAGACAAATTTCAGTGCTTCTAAATAGTGTT
TCACGACATAATTTTTTGCCTTTTTTGTACAGGCCACACAAAAAGTTATTTTTCCATGAAACTTTATGCACGCACATAGA
ACATGAAGACGTACGCGTGCAATTTTTTTTCCAGATTTTTTTAGCATTTAGAAATGTGTTTTTTAAAATGGGTTCATATG
TACCCGGATTCATTCATGCACTTCTCCTATGCACCATGCCTTTTCCCGGCACAGTTCAGTTTAGTACTGC-AAGATGAGG
ATGTTCCACCGTCCATGAAGGTGAAATTGATGGAACCTCCATTACCACTACCGCTCGCGATCGTACACGTACCTCATAGT
ACCAGACTA------CACCTCCATATATAAATGAATCGAGCGGTCGACAGATACATACACGCTAGCCACTACACCATAGG
GATTTGCAACTTTGCAAGCAAGCAAGAAAGCAGCTAGCTAGCGAGCTCGACCATGGATGAGTTCACTTTCCCCACTGTCC
CGGGCGGGCAGTGCAAGCTCGCGCCGTTCCCTCCGCCGTGGTTCGTCGCCGCCGTCGCGGAGGAGGAGGACGA-------
-----CGGCAGCAGCGGCTCGCCGAGGGGCCGCGACGAGAGGATGGACATGCTGTGGGAGGACTTCAACGAAGAGCTCGC
GCGCGCGCCGCCGGTGTGCCCTCTCAGCCCCGTGAGCAAGGGGGGCGGGCTGATGGCGATGACGATGATGAAGGAGGCCG
AGTGGTTCTACAGCGACGGCGACGGCGAGGGCGACGACGGCGGTGTGGTCGAGGCGAGGAAGCGTAGTGGCAGTGGCAGG
CACATGGTGGTCCGGCGCCGGAGGTGGAGCCTGCTGCTGATGTTCAGGCTGCTCAAGAAGCTCTTCCTGGTCAAGAAATC
CAGGAGCGGAAGAACCGCGTCAATCTGATCACACCAGATGAGCTCCAGAAGTCAATGCAGAAATTATTGGTGCGGTGCAT
CAGTCACTACTCAGTAGTGTGTGCATAGTTGATACTACGTATATCATATACTCTACATGTGTAATTTTGCTTTTTCTCAC
AAGACTTCTTTTTGGCTGAAGAGTGTATTCCTCTTCATCATCTTTCTCTTGTTTTGATCAACTTGTTCTTCTT---GGCA
TCAGTATATTCCCAACTACAAACAATAGTTTTTCCGTCAGAATCATCTAAATTTTGGCTTTGGATCAAGTGCATTACATG
TTTATCAACAGCACTAGGATGACTGAGATCACAATTCCT--TGGACATTGCTCTTCGGTTAATCTAATCTTTCTTTGTGA
CTGAAGCAAGTTGTGTTGGCAATTGTGTTGTTGGCATTGGGATGGGATGAGCATGGCAAAGGTTGTCTGTCACCAACCTC
GTAGATGCAG------GTGCATCGCCATCAGGAACCTACCTAAATCAAGGAGCCATTCAATTGCGGCACCGTCACCAACA
TCTCCACACAGCACGTGAAGCAGAAAACCAGACGCCTCCCAAAGTCTCCAGCTTCATAAATGTCGCACTTAACAACACAC
TGCAACAG-CACACTCCCTCTCACATCAGGGTCACCATTCTGCCAATTAGGGATCTTATTATTGATCCCATGCCTGATGA
TGCCC----------TAATGATCTTGCTCTGCATGCTGCTGGCCTAATCACAATAACCCCACCTAACATCTTCAGATGCT
ACCTATTGTCCTGATCAAGTAACATTAACCTGCTGGTGTTACTTTACTAATACTCCTACTATAGTACACTACTGGAGTAC
AAAGAAGTCAATCATAGTACATAACTCCCTTAGAAAGTCACTTTGATCAAGACCTTACAAGT--GAGACTTTTCTGGGCC
ACGCGAGGTGCCGACACATGTTCGGTCACGATCTGGCCTACTCATGCAGTGTTGGTTGTCTGTGACTGTAACCGACCAAG
TGAAGCAACCAG
>chr4B_202
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-----------------------------------------TTCGTCAGGGGAAGCGCAAGCGAGCTGGATCCCCTGGAA
CGGAAGCAAGTTACCCTTACCCGGCACATCATCACCGCATCATCACTTGCTTAGCCGTCCATCTGTTCAAGCTTAGTTCT
GGCCAACCACAGCAGACAGCACCCAA------------------------------------------------------
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------------------------------GCACCATGCCTTTTCCCGGCACAGTTCAGTTTAGTACTAGAAAGATGAGG
ATGTTCCACCGGCCATGAAGGTGAAATTGATGAAACCTCCATTACCACTACCGCTCG------TACACGTACCTCATAGT
ACCATACTCC---ACCACCTCCATATATAAATGAATCGAGTGGTCGACAGATACATACACGCTAGCCACTACACCATATG
GATTTGCAACTTTGCAAGCAAGCAAGCT---AGCTATCTAGCTAGCTCCACCATGGATGAGTTCACTTTCCCCACTGTCC
CGGGAGGGCAGTGCAAGCTCGCGCCGTTCCCTCCGCCGTGGTTCGTCGCCGCCGTCGCAGAGGAGGAGGAGGGGGACGAC
GGCAGCGGCGGCGGCGGCGCGCCGTGGGGTCGCGACGAGAAGATGGACATGCTGTGGGAGGACTTCAACGAAGAGCTGGC
GCGCGCGCCGCCGGTGTGCCCTCTGAGCCCCGTGAGCAAGGGGGGCGGGCTGATGGCGATGACGATGATGAAGGAGGCCG
AGTGGTTCTACAGCGACGGCGACGGCGACGGCGATGACGGTGGTGTCATCGAGGCGAGGAAGCGTACTGGCAGTGGCAGG
CACATGGTGGTCCGGCGCCGGAGGTGGAGCCTGCTGCTGATGCTCAGGTTGCTCAAGAAGCTCTTCCTGGTGAAGAAGTC
CAGGAACGGGAGAACCGCGCCAATCTGATCACCTCAGATGAGCTCCAGAAGTCAATGCAGAAATTATTGGTGCGGTGCAT
CAGTCAGTACTCAGTAGTGTGTGCATAGTTGATA---CGTATATCATATACTCTACATGTGTAATTTTGCTTTTTCTCAC
AAGACTTATTTTTGGCTGAAGAGTGTATTCTTCT---TCATCTTTCTCTTGTTTTGATCAACTTGTTCTTCTTCTTGGCA
TCAGTATATTCCCAACTACAAACAATTGTGTTTCCCTCAGAATCATCTAAATTTTGGTTTCGGATCAAGTGCATTACATG
TTTATCAACAGCACTAGGATGACTGAGATCACAATTCCGTATGGACATTGCTCTTCCATT-ATCTAATCGTTCTTTGTGA
CTGAAGCAAGTTGTGTTGGCAATTGTGTTGTTAGCATTGGGATGGGATGAACATGGCAAAGGTTGTCTGCCACCAACCTC
GTAGATGCAG------GTGCATCGCCGTCAGGAACCCACCTAAATCAAGGAGCCATTCAATTGCGGCACCGTCACCAACA
TCTCCACGCAGCACGTGAAGCAGAAAACCAGACGCCTCCCAAAGTCTCCAGCTTCATAAATGTTGCACTTAACAACACAC
TGCAACAA-CACCT--CCTCTCACATCACGGTCACCGTTCTGCCAATTAGGGATCT---TACTAATCCCATGCCTGATGA
TGCCC----------TAATGATCTTGCTCTGCATGCTACTGGCCCAATCACAATAACCCCACCTAACATCTTCAGATGCT
ACCTATTGTCCCGATCAATTAACATTAACCTCCTGGTGCTACTTCACT--------------------------------
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>chr4D_215
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-----------------------------------------------------------AGCGAGCTGGATCCCCTGGAA
CGGAAGCAAGTTACCCGTACCCGGCACATCATCACCGCATCATCACTTGCTTAGCCATCCATCTCTTGAAGCTTAGTTCT
GGCCAACCACAGCACCCAGGT-----------------------------------------------------------
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--------------------------------ACCATGCCTTTTCCCCGCACAGTTCAGTTTAGTACTAGAAAGATGAGG
ATGTTCCACCGTCCATGAAGGTGAAATTTATGAGACCTACATTACCACCACTGCTGG------TACACGTACCTCATAGT
ACTGTACTAGACTACCACCTCCATATAAATATGAATCTAGTGGTCGACAGATACATACTACA----CACTACACCATAGG
GATTTGCAACTTTGCAAGCAAGCAAG---------------CTAGCTCCACCATGGATGAGTTCACTTTCCCCACTGTCC
CAGGCGGGCAGTGCAAGCTCGCGCCGTTCCCTCCGCCGTGGTTCGTCGCCGCCGTCGCGGAGGAGGAGGAGGAGGA----
--------CGGCGGCGGCGCGCCGTGGGGCCGCGACGAGAAGATGGACATGCTGTGGGAGGACTTCAACGAAGAGCTCGC
GCGCGCGCCGCCGGTGTGCCCTCTCAGCCCCGTGAGCAAGGGGGGCGGGCTGATGGCGATGACGATGATGAAGGAGGCCG
AGTGGTTTTACAGCGACGGCGACGGCGAGGGCGATGACGGCGGTGTCATCGAGGCGAGGAAGCGTAGCGGCAGTGGCAGG
CACATGGTGGTCCGGCGCCGGAGATGGAGCCTGCTGCTGATGCTCAGGCTGCTCAAGAAGCTCTTCCTGGTCAAGAAGTC
CAGGAATGGGAGAACCGCGCCAATCTGATGAAATCAGATGAGCTGCAGAAGTTAATGCAGAAATTATTGGTGCG------
--------ACTCAGTAGTGTGTGCATAGTTGATA---CGTATATCATATACTCTACATGTGTAATTTTGCTTTTTCTCGC
AAGACTTCTTTTTGGCTGAAGAGTGTACTCTTCT---TCATCTTTCTCTTGTTTTGATCAACTTGTTCTTCTTCTTGGCA
TCAGTATATTCCCAACTACAAACAATTGTTTTTCCCTCTGAATCATCTAATTTTTGGTTTTGTATGGAATGCATGACAAG
TTTATCAACAACACTAGGATGAGTGAGATCACAATTCCGTATGGACATTGCTCTTCCATT-ATCTGATCTTTCTTTGTGA
CTGAAGCAAGTTGTGTTGGCAATTGTGTTGTTAGCATTGGGATGGGATGAGCATGGCAAAGGTTGTCTGCCACCAACCTC
GTAGATGCAGATGCAGGTGCATCGCCATCAGGAACCCACCTAAATCAAGGAGCCATTCAATTGCGGCACCGTCACCAACA
CCTCCAAGCAGCACGTGAAGCAGAAAACCAGACGCCAAAGTCTT----CAGCTTCATAAATGTTGCACTTAACAACACAC
TGCAACAATCACTT--CCTCTCACATCAGGGTCACCATTCTGCCAATTAGGGATCT---TATTAATCCCCTGCCTGATGA
TGCCCGGGAGAGGCCTAATGATCTTGCTGAGCATGCTACTAATCCAATCACAATAACCCCACCTAACATCTTCAGATGCC
ACCTATTGTCCTGATCA------ATTAACCTGCTGGTGTTACTTTACTAATACTCCTACTACAGT--ACTACTGGAGTAC
AAAGAAGTCAATCATAGTACAGAACTCCCTTAGAAAGCCTCTTTGATCAAGACCTTAGAAGTGAGAGACTTTTTCGGACC
ACGCGAGGTGCGGACACGTGTTCTGTCACGATCTGGCCTACGCATGCAGTGCTGGTCGT------CTGTAACCGACCAAG
TGAAGCAACCAG
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------SSSSS----------S------------
---------------------S------------------------------------------------------S---
----------------S------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------------------SS----------
--------------------------------S------------------------SSSSSS-----------------
----S-----------------------------------S---------------------------------------
--------------------------SSSSS-----S-----S-----S-------------------------------
----------------------------------------------------------------------S---------
---------S--S-----S-----S---------------S---------------------------------------
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----------------------------------S-----------SS--------------------------------
------------------------------------------S----------------------------------S--
-----S---S---------S-------------S----------------------------------------------
------S---------------------------SSS-------------------------------------------
------------------------------S---SSS-------------------------------------------
--------------------------S--------S---------------------S----------------------
--------------------------------------S-----------------SS--S-------------------
--------------------------------S------------------------------------S----------
------------------------------------S-------------------------------------------
-------S-------------------------------------------------------S----------------
-------S----SSSS----------------------------------------SSS----S----------------
-------------------------------------S------S-----------------------------------
------------------S------------------------------------------S---SS-------------
---------------------S---------------S-S-----------------S---------------SS--S--
-----------S-----S-----S-----------------S---------S----S--SSSSSS---------------
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>forward_493
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-------------------------------------------------------------------------GTGTACG
CGGCACAAAGTTT-------------------------------------------------------------------
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>reverse_2424
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-----------------------GGTCACGATCTGGCCTACTC-------------------------------------
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