Multiple sequence alignment - TraesCS4A01G208200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G208200 chr4A 100.000 2465 0 0 1 2465 501242616 501245080 0.000000e+00 4553
1 TraesCS4A01G208200 chr4A 94.340 106 6 0 1987 2092 675518146 675518251 1.960000e-36 163
2 TraesCS4A01G208200 chr4A 94.340 106 6 0 1987 2092 724728163 724728268 1.960000e-36 163
3 TraesCS4A01G208200 chr4D 89.696 1252 71 30 409 1641 88471298 88472510 0.000000e+00 1544
4 TraesCS4A01G208200 chr4D 90.031 321 16 6 1674 1990 88472730 88473038 3.820000e-108 401
5 TraesCS4A01G208200 chr4B 90.980 1031 46 17 615 1623 125425220 125426225 0.000000e+00 1345
6 TraesCS4A01G208200 chr4B 86.620 284 18 12 2182 2465 125427079 125427342 1.850000e-76 296
7 TraesCS4A01G208200 chr4B 81.845 336 24 12 1669 1990 125426765 125427077 5.260000e-62 248
8 TraesCS4A01G208200 chr4B 85.556 180 19 6 432 604 125425001 125425180 5.420000e-42 182
9 TraesCS4A01G208200 chr7B 94.313 211 10 2 100 308 521120862 521121072 3.060000e-84 322
10 TraesCS4A01G208200 chr6A 95.545 202 8 1 107 307 511561220 511561421 3.060000e-84 322
11 TraesCS4A01G208200 chr3B 94.737 209 8 3 109 314 338601365 338601157 3.060000e-84 322
12 TraesCS4A01G208200 chr3B 95.349 86 3 1 2093 2177 68406252 68406337 4.280000e-28 135
13 TraesCS4A01G208200 chr7D 95.050 202 9 1 110 310 28070999 28071200 1.420000e-82 316
14 TraesCS4A01G208200 chr7D 93.636 110 7 0 1983 2092 554237146 554237037 5.450000e-37 165
15 TraesCS4A01G208200 chr5B 95.050 202 9 1 109 309 357161182 357160981 1.420000e-82 316
16 TraesCS4A01G208200 chr5B 95.025 201 9 1 109 308 21610243 21610443 5.120000e-82 315
17 TraesCS4A01G208200 chr3A 95.050 202 9 1 109 309 30752669 30752870 1.420000e-82 316
18 TraesCS4A01G208200 chr3A 88.265 196 14 6 1988 2177 515248510 515248702 2.470000e-55 226
19 TraesCS4A01G208200 chr2D 95.050 202 8 2 109 309 401289118 401288918 1.420000e-82 316
20 TraesCS4A01G208200 chr6B 95.025 201 9 1 109 308 335548071 335547871 5.120000e-82 315
21 TraesCS4A01G208200 chr6B 94.286 105 6 0 1988 2092 308302519 308302623 7.050000e-36 161
22 TraesCS4A01G208200 chr1D 93.519 108 7 0 1985 2092 4309042 4309149 7.050000e-36 161
23 TraesCS4A01G208200 chr1D 93.519 108 7 0 1985 2092 7179691 7179584 7.050000e-36 161
24 TraesCS4A01G208200 chr5D 93.396 106 7 0 1987 2092 368983606 368983501 9.130000e-35 158
25 TraesCS4A01G208200 chr2B 92.035 113 8 1 1981 2092 25948786 25948898 9.130000e-35 158
26 TraesCS4A01G208200 chr2B 82.320 181 19 8 1744 1915 247392843 247392667 7.100000e-31 145
27 TraesCS4A01G208200 chr2B 92.784 97 7 0 323 419 391962155 391962251 9.190000e-30 141
28 TraesCS4A01G208200 chr2B 95.455 88 3 1 2092 2178 146773126 146773039 3.310000e-29 139
29 TraesCS4A01G208200 chr2B 94.186 86 4 1 2093 2177 677014564 677014649 1.990000e-26 130
30 TraesCS4A01G208200 chr2A 94.253 87 4 1 2092 2177 18310336 18310422 5.530000e-27 132
31 TraesCS4A01G208200 chr6D 94.118 85 5 0 2093 2177 247794757 247794673 1.990000e-26 130
32 TraesCS4A01G208200 chr6D 94.118 85 5 0 2093 2177 302746371 302746455 1.990000e-26 130
33 TraesCS4A01G208200 chr6D 94.118 85 5 0 2093 2177 312264116 312264200 1.990000e-26 130
34 TraesCS4A01G208200 chr6D 94.118 85 5 0 2093 2177 323588807 323588891 1.990000e-26 130


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G208200 chr4A 501242616 501245080 2464 False 4553.00 4553 100.00000 1 2465 1 chr4A.!!$F1 2464
1 TraesCS4A01G208200 chr4D 88471298 88473038 1740 False 972.50 1544 89.86350 409 1990 2 chr4D.!!$F1 1581
2 TraesCS4A01G208200 chr4B 125425001 125427342 2341 False 517.75 1345 86.25025 432 2465 4 chr4B.!!$F1 2033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
142 143 0.178873 TGGGAGGTGCTTAGGGAAGT 60.179 55.0 0.0 0.0 34.9 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1863 2454 1.072173 TGCTCCCATGATACCAATCCG 59.928 52.381 0.0 0.0 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.257935 CGCCACATAGAAAACCCCA 57.742 52.632 0.00 0.00 0.00 4.96
19 20 1.094785 CGCCACATAGAAAACCCCAG 58.905 55.000 0.00 0.00 0.00 4.45
20 21 1.474330 GCCACATAGAAAACCCCAGG 58.526 55.000 0.00 0.00 0.00 4.45
21 22 1.272480 GCCACATAGAAAACCCCAGGT 60.272 52.381 0.00 0.00 37.65 4.00
36 37 2.509786 GGTTTGATACCGCGCCGA 60.510 61.111 0.00 0.00 37.12 5.54
37 38 1.885850 GGTTTGATACCGCGCCGAT 60.886 57.895 0.00 0.00 37.12 4.18
38 39 1.275657 GTTTGATACCGCGCCGATG 59.724 57.895 0.00 0.00 0.00 3.84
39 40 1.885388 TTTGATACCGCGCCGATGG 60.885 57.895 0.00 0.00 0.00 3.51
40 41 2.299503 TTTGATACCGCGCCGATGGA 62.300 55.000 0.00 0.00 0.00 3.41
41 42 2.733593 GATACCGCGCCGATGGAC 60.734 66.667 0.00 0.00 0.00 4.02
42 43 3.208884 GATACCGCGCCGATGGACT 62.209 63.158 0.00 0.00 0.00 3.85
43 44 2.694829 GATACCGCGCCGATGGACTT 62.695 60.000 0.00 0.00 0.00 3.01
44 45 2.694829 ATACCGCGCCGATGGACTTC 62.695 60.000 0.00 0.00 0.00 3.01
45 46 4.812476 CCGCGCCGATGGACTTCA 62.812 66.667 0.00 0.00 0.00 3.02
46 47 3.257561 CGCGCCGATGGACTTCAG 61.258 66.667 0.00 0.00 0.00 3.02
47 48 2.184322 GCGCCGATGGACTTCAGA 59.816 61.111 0.00 0.00 0.00 3.27
48 49 2.167861 GCGCCGATGGACTTCAGAC 61.168 63.158 0.00 0.00 0.00 3.51
49 50 1.519455 CGCCGATGGACTTCAGACC 60.519 63.158 0.00 0.00 0.00 3.85
50 51 1.153349 GCCGATGGACTTCAGACCC 60.153 63.158 0.00 0.00 0.00 4.46
51 52 1.899437 GCCGATGGACTTCAGACCCA 61.899 60.000 0.00 0.00 0.00 4.51
52 53 0.613260 CCGATGGACTTCAGACCCAA 59.387 55.000 0.00 0.00 33.15 4.12
53 54 1.210478 CCGATGGACTTCAGACCCAAT 59.790 52.381 0.00 0.00 33.15 3.16
54 55 2.434336 CCGATGGACTTCAGACCCAATA 59.566 50.000 0.00 0.00 33.15 1.90
55 56 3.493350 CCGATGGACTTCAGACCCAATAG 60.493 52.174 0.00 0.00 33.15 1.73
56 57 3.471680 GATGGACTTCAGACCCAATAGC 58.528 50.000 0.00 0.00 33.15 2.97
57 58 2.265367 TGGACTTCAGACCCAATAGCA 58.735 47.619 0.00 0.00 0.00 3.49
58 59 2.642311 TGGACTTCAGACCCAATAGCAA 59.358 45.455 0.00 0.00 0.00 3.91
59 60 3.274288 GGACTTCAGACCCAATAGCAAG 58.726 50.000 0.00 0.00 0.00 4.01
60 61 3.055094 GGACTTCAGACCCAATAGCAAGA 60.055 47.826 0.00 0.00 0.00 3.02
61 62 3.935828 GACTTCAGACCCAATAGCAAGAC 59.064 47.826 0.00 0.00 0.00 3.01
62 63 3.274288 CTTCAGACCCAATAGCAAGACC 58.726 50.000 0.00 0.00 0.00 3.85
63 64 2.265367 TCAGACCCAATAGCAAGACCA 58.735 47.619 0.00 0.00 0.00 4.02
64 65 2.846206 TCAGACCCAATAGCAAGACCAT 59.154 45.455 0.00 0.00 0.00 3.55
65 66 3.118261 TCAGACCCAATAGCAAGACCATC 60.118 47.826 0.00 0.00 0.00 3.51
66 67 3.118112 CAGACCCAATAGCAAGACCATCT 60.118 47.826 0.00 0.00 0.00 2.90
67 68 4.101585 CAGACCCAATAGCAAGACCATCTA 59.898 45.833 0.00 0.00 0.00 1.98
68 69 4.721776 AGACCCAATAGCAAGACCATCTAA 59.278 41.667 0.00 0.00 0.00 2.10
69 70 4.781934 ACCCAATAGCAAGACCATCTAAC 58.218 43.478 0.00 0.00 0.00 2.34
70 71 4.475016 ACCCAATAGCAAGACCATCTAACT 59.525 41.667 0.00 0.00 0.00 2.24
71 72 5.665812 ACCCAATAGCAAGACCATCTAACTA 59.334 40.000 0.00 0.00 0.00 2.24
72 73 6.157994 ACCCAATAGCAAGACCATCTAACTAA 59.842 38.462 0.00 0.00 0.00 2.24
73 74 6.483640 CCCAATAGCAAGACCATCTAACTAAC 59.516 42.308 0.00 0.00 0.00 2.34
74 75 7.047891 CCAATAGCAAGACCATCTAACTAACA 58.952 38.462 0.00 0.00 0.00 2.41
75 76 7.716998 CCAATAGCAAGACCATCTAACTAACAT 59.283 37.037 0.00 0.00 0.00 2.71
76 77 8.768955 CAATAGCAAGACCATCTAACTAACATC 58.231 37.037 0.00 0.00 0.00 3.06
77 78 5.675538 AGCAAGACCATCTAACTAACATCC 58.324 41.667 0.00 0.00 0.00 3.51
78 79 5.189736 AGCAAGACCATCTAACTAACATCCA 59.810 40.000 0.00 0.00 0.00 3.41
79 80 5.294552 GCAAGACCATCTAACTAACATCCAC 59.705 44.000 0.00 0.00 0.00 4.02
80 81 6.406370 CAAGACCATCTAACTAACATCCACA 58.594 40.000 0.00 0.00 0.00 4.17
81 82 6.814954 AGACCATCTAACTAACATCCACAT 57.185 37.500 0.00 0.00 0.00 3.21
82 83 7.914427 AGACCATCTAACTAACATCCACATA 57.086 36.000 0.00 0.00 0.00 2.29
83 84 8.497910 AGACCATCTAACTAACATCCACATAT 57.502 34.615 0.00 0.00 0.00 1.78
84 85 9.601810 AGACCATCTAACTAACATCCACATATA 57.398 33.333 0.00 0.00 0.00 0.86
94 95 9.730420 ACTAACATCCACATATAAATTTTTCGC 57.270 29.630 0.00 0.00 0.00 4.70
95 96 9.950680 CTAACATCCACATATAAATTTTTCGCT 57.049 29.630 0.00 0.00 0.00 4.93
97 98 9.651913 AACATCCACATATAAATTTTTCGCTTT 57.348 25.926 0.00 0.00 0.00 3.51
100 101 9.744468 ATCCACATATAAATTTTTCGCTTTACC 57.256 29.630 0.00 0.00 0.00 2.85
101 102 8.962679 TCCACATATAAATTTTTCGCTTTACCT 58.037 29.630 0.00 0.00 0.00 3.08
102 103 9.019764 CCACATATAAATTTTTCGCTTTACCTG 57.980 33.333 0.00 0.00 0.00 4.00
103 104 9.019764 CACATATAAATTTTTCGCTTTACCTGG 57.980 33.333 0.00 0.00 0.00 4.45
104 105 8.962679 ACATATAAATTTTTCGCTTTACCTGGA 58.037 29.630 0.00 0.00 0.00 3.86
105 106 9.450807 CATATAAATTTTTCGCTTTACCTGGAG 57.549 33.333 0.00 0.00 0.00 3.86
106 107 3.850122 ATTTTTCGCTTTACCTGGAGC 57.150 42.857 0.00 0.00 35.58 4.70
107 108 2.264005 TTTTCGCTTTACCTGGAGCA 57.736 45.000 0.00 0.00 38.81 4.26
108 109 2.489938 TTTCGCTTTACCTGGAGCAT 57.510 45.000 0.00 0.00 38.81 3.79
109 110 2.489938 TTCGCTTTACCTGGAGCATT 57.510 45.000 0.00 0.00 38.81 3.56
110 111 3.620427 TTCGCTTTACCTGGAGCATTA 57.380 42.857 0.00 0.00 38.81 1.90
111 112 3.179443 TCGCTTTACCTGGAGCATTAG 57.821 47.619 0.00 0.00 38.81 1.73
112 113 2.158957 TCGCTTTACCTGGAGCATTAGG 60.159 50.000 0.00 0.00 38.81 2.69
113 114 1.950216 GCTTTACCTGGAGCATTAGGC 59.050 52.381 0.00 0.00 45.30 3.93
114 115 2.576615 CTTTACCTGGAGCATTAGGCC 58.423 52.381 0.00 0.00 46.50 5.19
115 116 1.893315 TTACCTGGAGCATTAGGCCT 58.107 50.000 11.78 11.78 46.50 5.19
116 117 1.893315 TACCTGGAGCATTAGGCCTT 58.107 50.000 12.58 0.00 46.50 4.35
117 118 0.257039 ACCTGGAGCATTAGGCCTTG 59.743 55.000 12.58 5.00 46.50 3.61
118 119 0.257039 CCTGGAGCATTAGGCCTTGT 59.743 55.000 12.58 0.00 46.50 3.16
119 120 1.490490 CCTGGAGCATTAGGCCTTGTA 59.510 52.381 12.58 0.00 46.50 2.41
120 121 2.565841 CTGGAGCATTAGGCCTTGTAC 58.434 52.381 12.58 2.51 46.50 2.90
121 122 1.912731 TGGAGCATTAGGCCTTGTACA 59.087 47.619 12.58 2.09 46.50 2.90
122 123 2.307392 TGGAGCATTAGGCCTTGTACAA 59.693 45.455 12.58 8.28 46.50 2.41
123 124 3.053693 TGGAGCATTAGGCCTTGTACAAT 60.054 43.478 12.58 0.00 46.50 2.71
124 125 3.316308 GGAGCATTAGGCCTTGTACAATG 59.684 47.826 12.58 15.82 46.50 2.82
125 126 3.290710 AGCATTAGGCCTTGTACAATGG 58.709 45.455 21.36 13.26 46.50 3.16
126 127 2.362077 GCATTAGGCCTTGTACAATGGG 59.638 50.000 21.36 14.91 36.11 4.00
127 128 3.897239 CATTAGGCCTTGTACAATGGGA 58.103 45.455 12.58 0.00 0.00 4.37
128 129 3.644966 TTAGGCCTTGTACAATGGGAG 57.355 47.619 12.58 1.65 0.00 4.30
129 130 0.625849 AGGCCTTGTACAATGGGAGG 59.374 55.000 16.08 11.34 0.00 4.30
130 131 0.331616 GGCCTTGTACAATGGGAGGT 59.668 55.000 16.08 0.00 0.00 3.85
131 132 1.463674 GCCTTGTACAATGGGAGGTG 58.536 55.000 16.08 0.00 0.00 4.00
132 133 1.463674 CCTTGTACAATGGGAGGTGC 58.536 55.000 9.13 0.00 0.00 5.01
133 134 1.004745 CCTTGTACAATGGGAGGTGCT 59.995 52.381 9.13 0.00 0.00 4.40
134 135 2.555227 CCTTGTACAATGGGAGGTGCTT 60.555 50.000 9.13 0.00 0.00 3.91
135 136 3.308117 CCTTGTACAATGGGAGGTGCTTA 60.308 47.826 9.13 0.00 0.00 3.09
136 137 3.627395 TGTACAATGGGAGGTGCTTAG 57.373 47.619 0.00 0.00 0.00 2.18
137 138 2.238646 TGTACAATGGGAGGTGCTTAGG 59.761 50.000 0.00 0.00 0.00 2.69
138 139 0.625849 ACAATGGGAGGTGCTTAGGG 59.374 55.000 0.00 0.00 0.00 3.53
139 140 0.918983 CAATGGGAGGTGCTTAGGGA 59.081 55.000 0.00 0.00 0.00 4.20
140 141 1.284785 CAATGGGAGGTGCTTAGGGAA 59.715 52.381 0.00 0.00 0.00 3.97
141 142 1.216990 ATGGGAGGTGCTTAGGGAAG 58.783 55.000 0.00 0.00 35.60 3.46
142 143 0.178873 TGGGAGGTGCTTAGGGAAGT 60.179 55.000 0.00 0.00 34.90 3.01
143 144 0.253327 GGGAGGTGCTTAGGGAAGTG 59.747 60.000 0.00 0.00 34.90 3.16
144 145 0.393132 GGAGGTGCTTAGGGAAGTGC 60.393 60.000 0.00 0.00 34.90 4.40
145 146 0.615850 GAGGTGCTTAGGGAAGTGCT 59.384 55.000 0.00 0.00 34.90 4.40
146 147 1.003696 GAGGTGCTTAGGGAAGTGCTT 59.996 52.381 0.00 0.00 34.90 3.91
147 148 2.236395 GAGGTGCTTAGGGAAGTGCTTA 59.764 50.000 0.00 0.00 34.90 3.09
148 149 2.237392 AGGTGCTTAGGGAAGTGCTTAG 59.763 50.000 0.00 0.00 34.90 2.18
149 150 2.236395 GGTGCTTAGGGAAGTGCTTAGA 59.764 50.000 0.00 0.00 34.90 2.10
150 151 3.307480 GGTGCTTAGGGAAGTGCTTAGAA 60.307 47.826 0.00 0.00 34.90 2.10
151 152 4.324267 GTGCTTAGGGAAGTGCTTAGAAA 58.676 43.478 0.00 0.00 34.90 2.52
152 153 4.760204 GTGCTTAGGGAAGTGCTTAGAAAA 59.240 41.667 0.00 0.00 34.90 2.29
153 154 5.240844 GTGCTTAGGGAAGTGCTTAGAAAAA 59.759 40.000 0.00 0.00 34.90 1.94
154 155 6.010219 TGCTTAGGGAAGTGCTTAGAAAAAT 58.990 36.000 0.00 0.00 34.90 1.82
155 156 7.120726 GTGCTTAGGGAAGTGCTTAGAAAAATA 59.879 37.037 0.00 0.00 34.90 1.40
156 157 7.668052 TGCTTAGGGAAGTGCTTAGAAAAATAA 59.332 33.333 0.00 0.00 34.90 1.40
157 158 8.520351 GCTTAGGGAAGTGCTTAGAAAAATAAA 58.480 33.333 0.00 0.00 34.90 1.40
158 159 9.841880 CTTAGGGAAGTGCTTAGAAAAATAAAC 57.158 33.333 0.00 0.00 0.00 2.01
159 160 7.228314 AGGGAAGTGCTTAGAAAAATAAACC 57.772 36.000 0.00 0.00 0.00 3.27
160 161 6.780522 AGGGAAGTGCTTAGAAAAATAAACCA 59.219 34.615 0.00 0.00 0.00 3.67
161 162 7.039714 AGGGAAGTGCTTAGAAAAATAAACCAG 60.040 37.037 0.00 0.00 0.00 4.00
162 163 7.039993 GGGAAGTGCTTAGAAAAATAAACCAGA 60.040 37.037 0.00 0.00 0.00 3.86
163 164 7.808381 GGAAGTGCTTAGAAAAATAAACCAGAC 59.192 37.037 0.00 0.00 0.00 3.51
164 165 8.465273 AAGTGCTTAGAAAAATAAACCAGACT 57.535 30.769 0.00 0.00 0.00 3.24
165 166 8.465273 AGTGCTTAGAAAAATAAACCAGACTT 57.535 30.769 0.00 0.00 0.00 3.01
166 167 8.914011 AGTGCTTAGAAAAATAAACCAGACTTT 58.086 29.630 0.00 0.00 0.00 2.66
167 168 9.529325 GTGCTTAGAAAAATAAACCAGACTTTT 57.471 29.630 0.00 0.00 0.00 2.27
168 169 9.744468 TGCTTAGAAAAATAAACCAGACTTTTC 57.256 29.630 0.00 0.00 36.63 2.29
169 170 9.967346 GCTTAGAAAAATAAACCAGACTTTTCT 57.033 29.630 11.53 11.53 44.41 2.52
176 177 9.529325 AAAATAAACCAGACTTTTCTTAAGCAC 57.471 29.630 0.00 0.00 0.00 4.40
177 178 5.515797 AAACCAGACTTTTCTTAAGCACC 57.484 39.130 0.00 0.00 0.00 5.01
178 179 3.139077 ACCAGACTTTTCTTAAGCACCG 58.861 45.455 0.00 0.00 0.00 4.94
179 180 2.484264 CCAGACTTTTCTTAAGCACCGG 59.516 50.000 0.00 0.00 0.00 5.28
180 181 3.139077 CAGACTTTTCTTAAGCACCGGT 58.861 45.455 0.00 0.00 0.00 5.28
181 182 3.058914 CAGACTTTTCTTAAGCACCGGTG 60.059 47.826 30.66 30.66 0.00 4.94
194 195 3.740044 CACCGGTGCTTATTTGTACAG 57.260 47.619 24.02 0.00 0.00 2.74
195 196 2.418628 CACCGGTGCTTATTTGTACAGG 59.581 50.000 24.02 0.00 41.71 4.00
196 197 2.303600 ACCGGTGCTTATTTGTACAGGA 59.696 45.455 6.12 0.00 39.37 3.86
197 198 3.054655 ACCGGTGCTTATTTGTACAGGAT 60.055 43.478 6.12 0.00 39.37 3.24
198 199 4.162698 ACCGGTGCTTATTTGTACAGGATA 59.837 41.667 6.12 0.00 39.37 2.59
199 200 4.750098 CCGGTGCTTATTTGTACAGGATAG 59.250 45.833 0.00 0.00 39.37 2.08
200 201 5.452776 CCGGTGCTTATTTGTACAGGATAGA 60.453 44.000 0.00 0.00 39.37 1.98
201 202 5.462398 CGGTGCTTATTTGTACAGGATAGAC 59.538 44.000 0.00 0.00 0.00 2.59
202 203 5.462398 GGTGCTTATTTGTACAGGATAGACG 59.538 44.000 0.00 0.00 0.00 4.18
203 204 5.047847 TGCTTATTTGTACAGGATAGACGC 58.952 41.667 0.00 4.64 0.00 5.19
204 205 5.163447 TGCTTATTTGTACAGGATAGACGCT 60.163 40.000 0.00 0.00 0.00 5.07
205 206 5.753921 GCTTATTTGTACAGGATAGACGCTT 59.246 40.000 0.00 0.00 0.00 4.68
206 207 6.921857 GCTTATTTGTACAGGATAGACGCTTA 59.078 38.462 0.00 0.00 0.00 3.09
207 208 7.437267 GCTTATTTGTACAGGATAGACGCTTAA 59.563 37.037 0.00 0.00 0.00 1.85
208 209 8.638685 TTATTTGTACAGGATAGACGCTTAAC 57.361 34.615 0.00 0.00 0.00 2.01
209 210 5.909621 TTGTACAGGATAGACGCTTAACT 57.090 39.130 0.00 0.00 0.00 2.24
210 211 7.395190 TTTGTACAGGATAGACGCTTAACTA 57.605 36.000 0.00 0.00 0.00 2.24
211 212 7.395190 TTGTACAGGATAGACGCTTAACTAA 57.605 36.000 0.00 0.00 0.00 2.24
212 213 7.024340 TGTACAGGATAGACGCTTAACTAAG 57.976 40.000 0.00 0.00 36.40 2.18
226 227 6.872670 CTTAACTAAGCGTTTCTCCTGTAG 57.127 41.667 0.00 0.00 37.05 2.74
227 228 6.579666 TTAACTAAGCGTTTCTCCTGTAGA 57.420 37.500 0.00 0.00 37.05 2.59
228 229 5.464030 AACTAAGCGTTTCTCCTGTAGAA 57.536 39.130 0.00 0.00 42.62 2.10
237 238 4.755266 TTCTCCTGTAGAAATAGGCACC 57.245 45.455 0.00 0.00 41.35 5.01
238 239 2.693591 TCTCCTGTAGAAATAGGCACCG 59.306 50.000 0.00 0.00 34.08 4.94
239 240 1.760613 TCCTGTAGAAATAGGCACCGG 59.239 52.381 0.00 0.00 34.08 5.28
240 241 1.485066 CCTGTAGAAATAGGCACCGGT 59.515 52.381 0.00 0.00 0.00 5.28
241 242 2.550978 CTGTAGAAATAGGCACCGGTG 58.449 52.381 30.66 30.66 0.00 4.94
255 256 3.833442 CACCGGTGCTTTAGAAAAATCC 58.167 45.455 24.02 0.00 0.00 3.01
256 257 2.486592 ACCGGTGCTTTAGAAAAATCCG 59.513 45.455 6.12 0.00 35.24 4.18
257 258 2.159435 CCGGTGCTTTAGAAAAATCCGG 60.159 50.000 0.00 0.00 41.83 5.14
258 259 2.486592 CGGTGCTTTAGAAAAATCCGGT 59.513 45.455 0.00 0.00 33.57 5.28
259 260 3.057806 CGGTGCTTTAGAAAAATCCGGTT 60.058 43.478 0.00 0.00 33.57 4.44
260 261 4.557895 CGGTGCTTTAGAAAAATCCGGTTT 60.558 41.667 0.00 0.00 33.57 3.27
261 262 5.335035 CGGTGCTTTAGAAAAATCCGGTTTA 60.335 40.000 0.00 0.00 33.57 2.01
262 263 6.624204 CGGTGCTTTAGAAAAATCCGGTTTAT 60.624 38.462 0.00 0.00 33.57 1.40
263 264 7.094631 GGTGCTTTAGAAAAATCCGGTTTATT 58.905 34.615 0.00 0.00 0.00 1.40
264 265 7.601130 GGTGCTTTAGAAAAATCCGGTTTATTT 59.399 33.333 0.00 0.00 0.00 1.40
265 266 8.984764 GTGCTTTAGAAAAATCCGGTTTATTTT 58.015 29.630 0.00 3.75 37.98 1.82
266 267 9.549078 TGCTTTAGAAAAATCCGGTTTATTTTT 57.451 25.926 19.49 19.49 44.88 1.94
274 275 9.719355 AAAAATCCGGTTTATTTTTCTAAGCAT 57.281 25.926 15.66 0.00 40.68 3.79
275 276 8.926715 AAATCCGGTTTATTTTTCTAAGCATC 57.073 30.769 0.00 0.00 0.00 3.91
276 277 7.881775 ATCCGGTTTATTTTTCTAAGCATCT 57.118 32.000 0.00 0.00 0.00 2.90
277 278 7.316544 TCCGGTTTATTTTTCTAAGCATCTC 57.683 36.000 0.00 0.00 0.00 2.75
278 279 7.110155 TCCGGTTTATTTTTCTAAGCATCTCT 58.890 34.615 0.00 0.00 0.00 3.10
279 280 7.280205 TCCGGTTTATTTTTCTAAGCATCTCTC 59.720 37.037 0.00 0.00 0.00 3.20
280 281 7.281100 CCGGTTTATTTTTCTAAGCATCTCTCT 59.719 37.037 0.00 0.00 0.00 3.10
281 282 9.314321 CGGTTTATTTTTCTAAGCATCTCTCTA 57.686 33.333 0.00 0.00 0.00 2.43
285 286 9.890629 TTATTTTTCTAAGCATCTCTCTAAGCA 57.109 29.630 0.00 0.00 0.00 3.91
286 287 7.602517 TTTTTCTAAGCATCTCTCTAAGCAC 57.397 36.000 0.00 0.00 0.00 4.40
287 288 4.927978 TCTAAGCATCTCTCTAAGCACC 57.072 45.455 0.00 0.00 0.00 5.01
288 289 4.541705 TCTAAGCATCTCTCTAAGCACCT 58.458 43.478 0.00 0.00 0.00 4.00
289 290 4.959210 TCTAAGCATCTCTCTAAGCACCTT 59.041 41.667 0.00 0.00 0.00 3.50
290 291 4.566426 AAGCATCTCTCTAAGCACCTTT 57.434 40.909 0.00 0.00 0.00 3.11
291 292 4.135747 AGCATCTCTCTAAGCACCTTTC 57.864 45.455 0.00 0.00 0.00 2.62
292 293 3.517100 AGCATCTCTCTAAGCACCTTTCA 59.483 43.478 0.00 0.00 0.00 2.69
293 294 4.163839 AGCATCTCTCTAAGCACCTTTCAT 59.836 41.667 0.00 0.00 0.00 2.57
294 295 4.880696 GCATCTCTCTAAGCACCTTTCATT 59.119 41.667 0.00 0.00 0.00 2.57
295 296 5.220815 GCATCTCTCTAAGCACCTTTCATTG 60.221 44.000 0.00 0.00 0.00 2.82
296 297 5.489792 TCTCTCTAAGCACCTTTCATTGT 57.510 39.130 0.00 0.00 0.00 2.71
297 298 6.605471 TCTCTCTAAGCACCTTTCATTGTA 57.395 37.500 0.00 0.00 0.00 2.41
298 299 6.398918 TCTCTCTAAGCACCTTTCATTGTAC 58.601 40.000 0.00 0.00 0.00 2.90
299 300 6.014584 TCTCTCTAAGCACCTTTCATTGTACA 60.015 38.462 0.00 0.00 0.00 2.90
300 301 6.530120 TCTCTAAGCACCTTTCATTGTACAA 58.470 36.000 11.41 11.41 0.00 2.41
301 302 6.650807 TCTCTAAGCACCTTTCATTGTACAAG 59.349 38.462 14.65 6.58 0.00 3.16
302 303 4.853924 AAGCACCTTTCATTGTACAAGG 57.146 40.909 13.96 13.96 42.59 3.61
303 304 2.558359 AGCACCTTTCATTGTACAAGGC 59.442 45.455 15.24 7.55 40.85 4.35
304 305 2.352715 GCACCTTTCATTGTACAAGGCC 60.353 50.000 15.24 0.00 40.85 5.19
305 306 3.157087 CACCTTTCATTGTACAAGGCCT 58.843 45.455 15.24 0.00 40.85 5.19
306 307 3.573967 CACCTTTCATTGTACAAGGCCTT 59.426 43.478 13.78 13.78 40.85 4.35
307 308 4.764823 CACCTTTCATTGTACAAGGCCTTA 59.235 41.667 20.00 1.64 40.85 2.69
308 309 5.010282 ACCTTTCATTGTACAAGGCCTTAG 58.990 41.667 20.00 15.05 40.85 2.18
309 310 5.010282 CCTTTCATTGTACAAGGCCTTAGT 58.990 41.667 20.00 19.91 30.94 2.24
310 311 5.106157 CCTTTCATTGTACAAGGCCTTAGTG 60.106 44.000 20.00 9.88 30.94 2.74
311 312 4.634012 TCATTGTACAAGGCCTTAGTGT 57.366 40.909 20.00 15.99 0.00 3.55
312 313 4.575885 TCATTGTACAAGGCCTTAGTGTC 58.424 43.478 20.00 15.13 0.00 3.67
313 314 3.412237 TTGTACAAGGCCTTAGTGTCC 57.588 47.619 20.00 4.51 0.00 4.02
314 315 1.626825 TGTACAAGGCCTTAGTGTCCC 59.373 52.381 20.00 8.07 0.00 4.46
315 316 1.626825 GTACAAGGCCTTAGTGTCCCA 59.373 52.381 20.00 0.78 0.00 4.37
316 317 1.145571 ACAAGGCCTTAGTGTCCCAA 58.854 50.000 20.00 0.00 0.00 4.12
317 318 1.497286 ACAAGGCCTTAGTGTCCCAAA 59.503 47.619 20.00 0.00 0.00 3.28
318 319 2.162681 CAAGGCCTTAGTGTCCCAAAG 58.837 52.381 20.00 0.00 0.00 2.77
319 320 1.742308 AGGCCTTAGTGTCCCAAAGA 58.258 50.000 0.00 0.00 0.00 2.52
320 321 1.630878 AGGCCTTAGTGTCCCAAAGAG 59.369 52.381 0.00 0.00 0.00 2.85
321 322 1.454201 GCCTTAGTGTCCCAAAGAGC 58.546 55.000 0.00 0.00 0.00 4.09
322 323 1.950954 GCCTTAGTGTCCCAAAGAGCC 60.951 57.143 0.00 0.00 0.00 4.70
323 324 1.676014 CCTTAGTGTCCCAAAGAGCCG 60.676 57.143 0.00 0.00 0.00 5.52
324 325 0.323629 TTAGTGTCCCAAAGAGCCGG 59.676 55.000 0.00 0.00 0.00 6.13
325 326 0.834687 TAGTGTCCCAAAGAGCCGGT 60.835 55.000 1.90 0.00 0.00 5.28
326 327 1.671379 GTGTCCCAAAGAGCCGGTC 60.671 63.158 1.90 0.00 0.00 4.79
327 328 2.144078 TGTCCCAAAGAGCCGGTCA 61.144 57.895 1.90 0.00 0.00 4.02
328 329 1.072505 GTCCCAAAGAGCCGGTCAA 59.927 57.895 1.90 0.00 0.00 3.18
329 330 0.322546 GTCCCAAAGAGCCGGTCAAT 60.323 55.000 1.90 0.00 0.00 2.57
330 331 1.065709 GTCCCAAAGAGCCGGTCAATA 60.066 52.381 1.90 0.00 0.00 1.90
331 332 1.209504 TCCCAAAGAGCCGGTCAATAG 59.790 52.381 1.90 0.00 0.00 1.73
332 333 1.209504 CCCAAAGAGCCGGTCAATAGA 59.790 52.381 1.90 0.00 0.00 1.98
333 334 2.355716 CCCAAAGAGCCGGTCAATAGAA 60.356 50.000 1.90 0.00 0.00 2.10
334 335 2.678336 CCAAAGAGCCGGTCAATAGAAC 59.322 50.000 1.90 0.00 0.00 3.01
335 336 3.600388 CAAAGAGCCGGTCAATAGAACT 58.400 45.455 1.90 0.00 0.00 3.01
336 337 3.983044 AAGAGCCGGTCAATAGAACTT 57.017 42.857 1.90 0.00 0.00 2.66
337 338 3.252974 AGAGCCGGTCAATAGAACTTG 57.747 47.619 1.90 0.00 0.00 3.16
338 339 2.832129 AGAGCCGGTCAATAGAACTTGA 59.168 45.455 1.90 0.00 32.84 3.02
339 340 3.118956 AGAGCCGGTCAATAGAACTTGAG 60.119 47.826 1.90 0.00 35.88 3.02
340 341 2.093447 AGCCGGTCAATAGAACTTGAGG 60.093 50.000 1.90 0.00 35.88 3.86
341 342 2.906354 CCGGTCAATAGAACTTGAGGG 58.094 52.381 0.00 0.00 35.88 4.30
342 343 2.280628 CGGTCAATAGAACTTGAGGGC 58.719 52.381 0.00 0.00 35.88 5.19
343 344 2.093447 CGGTCAATAGAACTTGAGGGCT 60.093 50.000 0.00 0.00 35.88 5.19
344 345 3.536570 GGTCAATAGAACTTGAGGGCTC 58.463 50.000 0.00 0.00 35.88 4.70
345 346 3.190874 GTCAATAGAACTTGAGGGCTCG 58.809 50.000 0.00 0.00 35.88 5.03
346 347 2.168521 TCAATAGAACTTGAGGGCTCGG 59.831 50.000 0.00 0.00 31.65 4.63
347 348 1.123928 ATAGAACTTGAGGGCTCGGG 58.876 55.000 0.00 0.00 0.00 5.14
348 349 1.614241 TAGAACTTGAGGGCTCGGGC 61.614 60.000 0.00 0.00 37.82 6.13
364 365 3.737172 GCCGGCTCAACGCACATT 61.737 61.111 22.15 0.00 41.67 2.71
365 366 2.953821 CCGGCTCAACGCACATTT 59.046 55.556 0.00 0.00 41.67 2.32
366 367 1.154225 CCGGCTCAACGCACATTTC 60.154 57.895 0.00 0.00 41.67 2.17
367 368 1.577328 CCGGCTCAACGCACATTTCT 61.577 55.000 0.00 0.00 41.67 2.52
368 369 0.238289 CGGCTCAACGCACATTTCTT 59.762 50.000 0.00 0.00 41.67 2.52
369 370 1.725931 CGGCTCAACGCACATTTCTTC 60.726 52.381 0.00 0.00 41.67 2.87
370 371 1.266718 GGCTCAACGCACATTTCTTCA 59.733 47.619 0.00 0.00 41.67 3.02
371 372 2.095059 GGCTCAACGCACATTTCTTCAT 60.095 45.455 0.00 0.00 41.67 2.57
372 373 3.166657 GCTCAACGCACATTTCTTCATC 58.833 45.455 0.00 0.00 38.92 2.92
373 374 3.410850 CTCAACGCACATTTCTTCATCG 58.589 45.455 0.00 0.00 0.00 3.84
374 375 3.063485 TCAACGCACATTTCTTCATCGA 58.937 40.909 0.00 0.00 0.00 3.59
375 376 3.120683 TCAACGCACATTTCTTCATCGAC 60.121 43.478 0.00 0.00 0.00 4.20
376 377 2.412870 ACGCACATTTCTTCATCGACA 58.587 42.857 0.00 0.00 0.00 4.35
377 378 3.002791 ACGCACATTTCTTCATCGACAT 58.997 40.909 0.00 0.00 0.00 3.06
378 379 3.062639 ACGCACATTTCTTCATCGACATC 59.937 43.478 0.00 0.00 0.00 3.06
379 380 3.544834 CGCACATTTCTTCATCGACATCC 60.545 47.826 0.00 0.00 0.00 3.51
380 381 3.624861 GCACATTTCTTCATCGACATCCT 59.375 43.478 0.00 0.00 0.00 3.24
381 382 4.495349 GCACATTTCTTCATCGACATCCTG 60.495 45.833 0.00 0.00 0.00 3.86
382 383 4.872124 CACATTTCTTCATCGACATCCTGA 59.128 41.667 0.00 0.00 0.00 3.86
383 384 5.006455 CACATTTCTTCATCGACATCCTGAG 59.994 44.000 0.00 0.00 0.00 3.35
384 385 5.105187 ACATTTCTTCATCGACATCCTGAGA 60.105 40.000 0.00 0.00 0.00 3.27
385 386 5.604758 TTTCTTCATCGACATCCTGAGAT 57.395 39.130 0.00 0.00 0.00 2.75
398 399 4.198028 TCCTGAGATGATATGCGGATTG 57.802 45.455 0.00 0.00 0.00 2.67
399 400 3.834231 TCCTGAGATGATATGCGGATTGA 59.166 43.478 0.00 0.00 0.00 2.57
400 401 4.284234 TCCTGAGATGATATGCGGATTGAA 59.716 41.667 0.00 0.00 0.00 2.69
401 402 4.391216 CCTGAGATGATATGCGGATTGAAC 59.609 45.833 0.00 0.00 0.00 3.18
402 403 4.959723 TGAGATGATATGCGGATTGAACA 58.040 39.130 0.00 0.00 0.00 3.18
403 404 5.554070 TGAGATGATATGCGGATTGAACAT 58.446 37.500 0.00 0.00 0.00 2.71
404 405 5.999600 TGAGATGATATGCGGATTGAACATT 59.000 36.000 0.00 0.00 0.00 2.71
405 406 6.072893 TGAGATGATATGCGGATTGAACATTG 60.073 38.462 0.00 0.00 0.00 2.82
406 407 5.999600 AGATGATATGCGGATTGAACATTGA 59.000 36.000 0.00 0.00 0.00 2.57
407 408 6.487668 AGATGATATGCGGATTGAACATTGAA 59.512 34.615 0.00 0.00 0.00 2.69
410 411 2.513753 TGCGGATTGAACATTGAAGGT 58.486 42.857 0.00 0.00 0.00 3.50
436 437 2.802719 TCTGGCCTTGTTAACATTCCC 58.197 47.619 9.56 10.08 0.00 3.97
441 442 2.161609 GCCTTGTTAACATTCCCAGTCG 59.838 50.000 9.56 0.00 0.00 4.18
442 443 3.408634 CCTTGTTAACATTCCCAGTCGT 58.591 45.455 9.56 0.00 0.00 4.34
443 444 3.188460 CCTTGTTAACATTCCCAGTCGTG 59.812 47.826 9.56 0.00 0.00 4.35
444 445 2.147958 TGTTAACATTCCCAGTCGTGC 58.852 47.619 3.59 0.00 0.00 5.34
445 446 2.147958 GTTAACATTCCCAGTCGTGCA 58.852 47.619 0.00 0.00 0.00 4.57
446 447 2.093306 TAACATTCCCAGTCGTGCAG 57.907 50.000 0.00 0.00 0.00 4.41
447 448 1.237285 AACATTCCCAGTCGTGCAGC 61.237 55.000 0.00 0.00 0.00 5.25
489 491 8.832735 TCTTGAGTAATACATTTCCTTTACCCT 58.167 33.333 0.00 0.00 0.00 4.34
490 492 8.801882 TTGAGTAATACATTTCCTTTACCCTG 57.198 34.615 0.00 0.00 0.00 4.45
491 493 7.924541 TGAGTAATACATTTCCTTTACCCTGT 58.075 34.615 0.00 0.00 0.00 4.00
532 537 4.868116 AAGGCAACGTGGCACGGT 62.868 61.111 39.03 33.96 45.77 4.83
537 542 2.015382 CAACGTGGCACGGTTAACA 58.985 52.632 39.03 0.00 39.21 2.41
543 548 2.690786 GTGGCACGGTTAACATACTCA 58.309 47.619 8.10 0.00 0.00 3.41
569 577 4.861552 AACGTGGCACGGTTAACT 57.138 50.000 39.03 18.22 39.21 2.24
604 612 1.807742 CCCTTTTACATTCGTTCCGCA 59.192 47.619 0.00 0.00 0.00 5.69
605 613 2.413634 CCCTTTTACATTCGTTCCGCAC 60.414 50.000 0.00 0.00 0.00 5.34
625 662 4.385748 GCACGCAATCTCGATGTTCATATA 59.614 41.667 0.00 0.00 0.00 0.86
627 664 6.464311 CACGCAATCTCGATGTTCATATATG 58.536 40.000 6.36 6.36 0.00 1.78
628 665 6.089954 CACGCAATCTCGATGTTCATATATGT 59.910 38.462 12.42 0.00 0.00 2.29
629 666 7.273381 CACGCAATCTCGATGTTCATATATGTA 59.727 37.037 12.42 0.00 0.00 2.29
759 801 3.154473 TTCGCTAGCGGGGCATCT 61.154 61.111 34.76 0.00 40.25 2.90
937 996 4.583866 TGCAGAGCACGCACACGA 62.584 61.111 0.00 0.00 44.16 4.35
947 1006 0.601576 ACGCACACGACCTTGCATTA 60.602 50.000 0.00 0.00 43.93 1.90
950 1009 2.343101 GCACACGACCTTGCATTACTA 58.657 47.619 0.00 0.00 38.68 1.82
951 1010 2.348666 GCACACGACCTTGCATTACTAG 59.651 50.000 0.00 0.00 38.68 2.57
961 1020 5.163395 ACCTTGCATTACTAGAGCTACCTTC 60.163 44.000 0.00 0.00 0.00 3.46
1044 1106 4.785453 GCCGCCCTGCTAGTGCTT 62.785 66.667 0.00 0.00 40.48 3.91
1538 1613 7.989416 ATAACACGACCTTGAGGAAATAAAA 57.011 32.000 3.59 0.00 38.94 1.52
1547 1622 3.207778 TGAGGAAATAAAATACGGGCCG 58.792 45.455 27.06 27.06 0.00 6.13
1598 1673 8.147058 TCATTTTGCTTGGTTGTGTTAATATGT 58.853 29.630 0.00 0.00 0.00 2.29
1631 2025 6.935741 TCATATTTGGACCTGTTAATTCGG 57.064 37.500 0.00 0.00 0.00 4.30
1633 2027 6.887545 TCATATTTGGACCTGTTAATTCGGTT 59.112 34.615 0.00 0.00 0.00 4.44
1635 2029 3.062122 TGGACCTGTTAATTCGGTTCC 57.938 47.619 0.00 0.00 0.00 3.62
1638 2131 2.928116 GACCTGTTAATTCGGTTCCTCG 59.072 50.000 0.00 0.00 0.00 4.63
1640 2133 2.928116 CCTGTTAATTCGGTTCCTCGAC 59.072 50.000 0.00 0.00 39.01 4.20
1655 2148 2.921754 CCTCGACTGACGGAACATAAAC 59.078 50.000 0.00 0.00 42.82 2.01
1704 2288 3.503748 AGCATAGTGTCAAGACAAAAGCC 59.496 43.478 4.20 0.00 43.77 4.35
1715 2299 8.855110 TGTCAAGACAAAAGCCTGAATAATTTA 58.145 29.630 0.00 0.00 38.56 1.40
1740 2324 6.377327 AAAACTACACCATTCACAACAGAG 57.623 37.500 0.00 0.00 0.00 3.35
1742 2326 5.801531 ACTACACCATTCACAACAGAGTA 57.198 39.130 0.00 0.00 0.00 2.59
1780 2365 9.330063 TGTCAATGTGTATCTAATTTGGATCTC 57.670 33.333 0.00 0.00 0.00 2.75
1886 2477 4.384537 CGGATTGGTATCATGGGAGCATAT 60.385 45.833 0.00 0.00 32.09 1.78
1891 2482 7.806680 TTGGTATCATGGGAGCATATAAGTA 57.193 36.000 0.00 0.00 0.00 2.24
1895 2486 8.486210 GGTATCATGGGAGCATATAAGTATTGA 58.514 37.037 0.00 0.00 0.00 2.57
1947 2539 4.088634 AGCTCCATGGCTCACAAAATTAA 58.911 39.130 6.96 0.00 38.24 1.40
1990 2588 6.437793 GTGATAACCTCCAGGCAGTATATACT 59.562 42.308 9.71 9.71 39.32 2.12
1992 2590 5.810080 AACCTCCAGGCAGTATATACTTC 57.190 43.478 12.87 8.30 39.32 3.01
1993 2591 4.161102 ACCTCCAGGCAGTATATACTTCC 58.839 47.826 20.34 20.34 39.49 3.46
1995 2593 4.464597 CCTCCAGGCAGTATATACTTCCTC 59.535 50.000 25.78 10.86 44.89 3.71
1996 2594 4.417437 TCCAGGCAGTATATACTTCCTCC 58.583 47.826 25.78 17.27 44.89 4.30
1997 2595 3.193691 CCAGGCAGTATATACTTCCTCCG 59.806 52.174 25.78 17.51 44.89 4.63
1998 2596 3.827302 CAGGCAGTATATACTTCCTCCGT 59.173 47.826 25.78 7.91 44.89 4.69
1999 2597 4.080687 AGGCAGTATATACTTCCTCCGTC 58.919 47.826 23.69 9.56 44.89 4.79
2000 2598 4.080687 GGCAGTATATACTTCCTCCGTCT 58.919 47.826 20.56 0.00 36.79 4.18
2001 2599 4.082679 GGCAGTATATACTTCCTCCGTCTG 60.083 50.000 20.56 5.87 36.79 3.51
2002 2600 4.760715 GCAGTATATACTTCCTCCGTCTGA 59.239 45.833 12.87 0.00 33.46 3.27
2003 2601 5.241064 GCAGTATATACTTCCTCCGTCTGAA 59.759 44.000 12.87 0.00 33.46 3.02
2004 2602 6.238953 GCAGTATATACTTCCTCCGTCTGAAA 60.239 42.308 12.87 0.00 33.46 2.69
2005 2603 7.683704 GCAGTATATACTTCCTCCGTCTGAAAA 60.684 40.741 12.87 0.00 33.46 2.29
2006 2604 8.361139 CAGTATATACTTCCTCCGTCTGAAAAT 58.639 37.037 12.87 0.00 33.46 1.82
2007 2605 9.584008 AGTATATACTTCCTCCGTCTGAAAATA 57.416 33.333 9.71 0.00 31.13 1.40
2008 2606 9.623350 GTATATACTTCCTCCGTCTGAAAATAC 57.377 37.037 5.58 0.00 0.00 1.89
2009 2607 6.793505 ATACTTCCTCCGTCTGAAAATACT 57.206 37.500 0.00 0.00 0.00 2.12
2010 2608 5.485209 ACTTCCTCCGTCTGAAAATACTT 57.515 39.130 0.00 0.00 0.00 2.24
2011 2609 6.600882 ACTTCCTCCGTCTGAAAATACTTA 57.399 37.500 0.00 0.00 0.00 2.24
2012 2610 7.184067 ACTTCCTCCGTCTGAAAATACTTAT 57.816 36.000 0.00 0.00 0.00 1.73
2013 2611 7.266400 ACTTCCTCCGTCTGAAAATACTTATC 58.734 38.462 0.00 0.00 0.00 1.75
2014 2612 6.785337 TCCTCCGTCTGAAAATACTTATCA 57.215 37.500 0.00 0.00 0.00 2.15
2015 2613 7.361457 TCCTCCGTCTGAAAATACTTATCAT 57.639 36.000 0.00 0.00 0.00 2.45
2016 2614 7.434492 TCCTCCGTCTGAAAATACTTATCATC 58.566 38.462 0.00 0.00 0.00 2.92
2017 2615 7.069455 TCCTCCGTCTGAAAATACTTATCATCA 59.931 37.037 0.00 0.00 0.00 3.07
2018 2616 7.710907 CCTCCGTCTGAAAATACTTATCATCAA 59.289 37.037 0.00 0.00 0.00 2.57
2019 2617 9.098355 CTCCGTCTGAAAATACTTATCATCAAA 57.902 33.333 0.00 0.00 0.00 2.69
2020 2618 9.443323 TCCGTCTGAAAATACTTATCATCAAAA 57.557 29.630 0.00 0.00 0.00 2.44
2171 2769 9.834628 TCATTTTGATAACAAGTATTTTCGGAC 57.165 29.630 0.00 0.00 37.32 4.79
2172 2770 8.785101 CATTTTGATAACAAGTATTTTCGGACG 58.215 33.333 0.00 0.00 37.32 4.79
2173 2771 6.411630 TTGATAACAAGTATTTTCGGACGG 57.588 37.500 0.00 0.00 0.00 4.79
2174 2772 5.722263 TGATAACAAGTATTTTCGGACGGA 58.278 37.500 0.00 0.00 0.00 4.69
2175 2773 5.808540 TGATAACAAGTATTTTCGGACGGAG 59.191 40.000 0.00 0.00 0.00 4.63
2176 2774 2.968675 ACAAGTATTTTCGGACGGAGG 58.031 47.619 0.00 0.00 0.00 4.30
2177 2775 2.564062 ACAAGTATTTTCGGACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
2178 2776 3.197116 ACAAGTATTTTCGGACGGAGGAT 59.803 43.478 0.00 0.00 0.00 3.24
2179 2777 3.729862 AGTATTTTCGGACGGAGGATC 57.270 47.619 0.00 0.00 0.00 3.36
2180 2778 3.028850 AGTATTTTCGGACGGAGGATCA 58.971 45.455 0.00 0.00 36.25 2.92
2181 2779 3.641906 AGTATTTTCGGACGGAGGATCAT 59.358 43.478 0.00 0.00 36.25 2.45
2182 2780 4.831155 AGTATTTTCGGACGGAGGATCATA 59.169 41.667 0.00 0.00 36.25 2.15
2183 2781 4.682778 ATTTTCGGACGGAGGATCATAA 57.317 40.909 0.00 0.00 36.25 1.90
2184 2782 4.475051 TTTTCGGACGGAGGATCATAAA 57.525 40.909 0.00 0.00 36.25 1.40
2185 2783 4.475051 TTTCGGACGGAGGATCATAAAA 57.525 40.909 0.00 0.00 36.25 1.52
2186 2784 3.728076 TCGGACGGAGGATCATAAAAG 57.272 47.619 0.00 0.00 36.25 2.27
2211 2809 5.718649 TTTGTAGCATTAAGATCAGACGC 57.281 39.130 0.00 0.00 0.00 5.19
2213 2811 1.858091 AGCATTAAGATCAGACGCCG 58.142 50.000 0.00 0.00 0.00 6.46
2237 2835 4.551388 GGATAGAGCTTCACTAATCACCG 58.449 47.826 0.00 0.00 0.00 4.94
2255 2853 1.087501 CGTTGCCTCTAAAGCTTCCC 58.912 55.000 0.00 0.00 0.00 3.97
2265 2863 4.510571 TCTAAAGCTTCCCGGTTTGTATC 58.489 43.478 0.00 0.00 42.79 2.24
2266 2864 2.871096 AAGCTTCCCGGTTTGTATCA 57.129 45.000 0.00 0.00 0.00 2.15
2267 2865 3.366052 AAGCTTCCCGGTTTGTATCAT 57.634 42.857 0.00 0.00 0.00 2.45
2269 2867 2.238646 AGCTTCCCGGTTTGTATCATGA 59.761 45.455 0.00 0.00 0.00 3.07
2270 2868 2.614057 GCTTCCCGGTTTGTATCATGAG 59.386 50.000 0.00 0.00 0.00 2.90
2271 2869 3.681594 GCTTCCCGGTTTGTATCATGAGA 60.682 47.826 0.00 0.00 0.00 3.27
2272 2870 4.708177 CTTCCCGGTTTGTATCATGAGAT 58.292 43.478 0.00 0.00 38.29 2.75
2273 2871 5.741964 GCTTCCCGGTTTGTATCATGAGATA 60.742 44.000 0.00 0.00 35.67 1.98
2274 2872 6.433847 TTCCCGGTTTGTATCATGAGATAT 57.566 37.500 0.00 0.00 38.88 1.63
2275 2873 7.547697 TTCCCGGTTTGTATCATGAGATATA 57.452 36.000 0.00 0.00 38.88 0.86
2276 2874 7.733773 TCCCGGTTTGTATCATGAGATATAT 57.266 36.000 0.00 0.00 38.88 0.86
2277 2875 7.555965 TCCCGGTTTGTATCATGAGATATATG 58.444 38.462 0.00 0.00 38.88 1.78
2278 2876 6.763135 CCCGGTTTGTATCATGAGATATATGG 59.237 42.308 0.00 0.00 38.88 2.74
2279 2877 6.258727 CCGGTTTGTATCATGAGATATATGGC 59.741 42.308 0.09 0.00 38.88 4.40
2320 2918 4.468643 TGCGTTAAATAGAAGGCAAAACG 58.531 39.130 1.38 0.00 44.67 3.60
2330 2928 2.594048 GGCAAAACGCAAAAGCGGG 61.594 57.895 14.62 2.30 45.17 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.094785 CTGGGGTTTTCTATGTGGCG 58.905 55.000 0.00 0.00 0.00 5.69
1 2 1.272480 ACCTGGGGTTTTCTATGTGGC 60.272 52.381 0.00 0.00 27.29 5.01
2 3 2.899303 ACCTGGGGTTTTCTATGTGG 57.101 50.000 0.00 0.00 27.29 4.17
19 20 1.885850 ATCGGCGCGGTATCAAACC 60.886 57.895 15.06 0.00 45.77 3.27
20 21 1.275657 CATCGGCGCGGTATCAAAC 59.724 57.895 15.06 0.00 0.00 2.93
21 22 1.885388 CCATCGGCGCGGTATCAAA 60.885 57.895 15.06 0.00 0.00 2.69
22 23 2.279851 CCATCGGCGCGGTATCAA 60.280 61.111 15.06 0.00 0.00 2.57
23 24 3.220658 TCCATCGGCGCGGTATCA 61.221 61.111 15.06 0.00 0.00 2.15
24 25 2.694829 AAGTCCATCGGCGCGGTATC 62.695 60.000 15.06 7.17 0.00 2.24
25 26 2.694829 GAAGTCCATCGGCGCGGTAT 62.695 60.000 15.06 4.64 0.00 2.73
26 27 3.420214 GAAGTCCATCGGCGCGGTA 62.420 63.158 15.06 2.33 0.00 4.02
27 28 4.814294 GAAGTCCATCGGCGCGGT 62.814 66.667 15.06 0.00 0.00 5.68
28 29 4.812476 TGAAGTCCATCGGCGCGG 62.812 66.667 8.83 8.94 0.00 6.46
29 30 3.257561 CTGAAGTCCATCGGCGCG 61.258 66.667 0.00 0.00 0.00 6.86
30 31 2.167861 GTCTGAAGTCCATCGGCGC 61.168 63.158 0.00 0.00 0.00 6.53
31 32 1.519455 GGTCTGAAGTCCATCGGCG 60.519 63.158 0.00 0.00 0.00 6.46
32 33 1.153349 GGGTCTGAAGTCCATCGGC 60.153 63.158 0.00 0.00 0.00 5.54
33 34 0.613260 TTGGGTCTGAAGTCCATCGG 59.387 55.000 0.00 0.00 0.00 4.18
34 35 2.698855 ATTGGGTCTGAAGTCCATCG 57.301 50.000 0.00 0.00 0.00 3.84
35 36 3.118261 TGCTATTGGGTCTGAAGTCCATC 60.118 47.826 0.00 0.00 0.00 3.51
36 37 2.846206 TGCTATTGGGTCTGAAGTCCAT 59.154 45.455 0.00 0.00 0.00 3.41
37 38 2.265367 TGCTATTGGGTCTGAAGTCCA 58.735 47.619 0.00 0.00 0.00 4.02
38 39 3.055094 TCTTGCTATTGGGTCTGAAGTCC 60.055 47.826 0.00 0.00 0.00 3.85
39 40 3.935828 GTCTTGCTATTGGGTCTGAAGTC 59.064 47.826 0.00 0.00 0.00 3.01
40 41 3.307762 GGTCTTGCTATTGGGTCTGAAGT 60.308 47.826 0.00 0.00 0.00 3.01
41 42 3.274288 GGTCTTGCTATTGGGTCTGAAG 58.726 50.000 0.00 0.00 0.00 3.02
42 43 2.642311 TGGTCTTGCTATTGGGTCTGAA 59.358 45.455 0.00 0.00 0.00 3.02
43 44 2.265367 TGGTCTTGCTATTGGGTCTGA 58.735 47.619 0.00 0.00 0.00 3.27
44 45 2.787473 TGGTCTTGCTATTGGGTCTG 57.213 50.000 0.00 0.00 0.00 3.51
45 46 3.118531 AGATGGTCTTGCTATTGGGTCT 58.881 45.455 0.00 0.00 0.00 3.85
46 47 3.567478 AGATGGTCTTGCTATTGGGTC 57.433 47.619 0.00 0.00 0.00 4.46
47 48 4.475016 AGTTAGATGGTCTTGCTATTGGGT 59.525 41.667 0.00 0.00 0.00 4.51
48 49 5.041191 AGTTAGATGGTCTTGCTATTGGG 57.959 43.478 0.00 0.00 0.00 4.12
49 50 7.047891 TGTTAGTTAGATGGTCTTGCTATTGG 58.952 38.462 0.00 0.00 0.00 3.16
50 51 8.668510 ATGTTAGTTAGATGGTCTTGCTATTG 57.331 34.615 0.00 0.00 0.00 1.90
51 52 7.934120 GGATGTTAGTTAGATGGTCTTGCTATT 59.066 37.037 0.00 0.00 0.00 1.73
52 53 7.071196 TGGATGTTAGTTAGATGGTCTTGCTAT 59.929 37.037 0.00 0.00 0.00 2.97
53 54 6.382859 TGGATGTTAGTTAGATGGTCTTGCTA 59.617 38.462 0.00 0.00 0.00 3.49
54 55 5.189736 TGGATGTTAGTTAGATGGTCTTGCT 59.810 40.000 0.00 0.00 0.00 3.91
55 56 5.294552 GTGGATGTTAGTTAGATGGTCTTGC 59.705 44.000 0.00 0.00 0.00 4.01
56 57 6.406370 TGTGGATGTTAGTTAGATGGTCTTG 58.594 40.000 0.00 0.00 0.00 3.02
57 58 6.620877 TGTGGATGTTAGTTAGATGGTCTT 57.379 37.500 0.00 0.00 0.00 3.01
58 59 6.814954 ATGTGGATGTTAGTTAGATGGTCT 57.185 37.500 0.00 0.00 0.00 3.85
68 69 9.730420 GCGAAAAATTTATATGTGGATGTTAGT 57.270 29.630 0.00 0.00 0.00 2.24
69 70 9.950680 AGCGAAAAATTTATATGTGGATGTTAG 57.049 29.630 0.00 0.00 0.00 2.34
71 72 9.651913 AAAGCGAAAAATTTATATGTGGATGTT 57.348 25.926 0.00 0.00 0.00 2.71
74 75 9.744468 GGTAAAGCGAAAAATTTATATGTGGAT 57.256 29.630 0.00 0.00 0.00 3.41
75 76 8.962679 AGGTAAAGCGAAAAATTTATATGTGGA 58.037 29.630 0.00 0.00 0.00 4.02
76 77 9.019764 CAGGTAAAGCGAAAAATTTATATGTGG 57.980 33.333 0.00 0.00 0.00 4.17
77 78 9.019764 CCAGGTAAAGCGAAAAATTTATATGTG 57.980 33.333 0.00 0.00 0.00 3.21
78 79 8.962679 TCCAGGTAAAGCGAAAAATTTATATGT 58.037 29.630 0.00 0.00 0.00 2.29
79 80 9.450807 CTCCAGGTAAAGCGAAAAATTTATATG 57.549 33.333 0.00 0.00 0.00 1.78
80 81 8.135529 GCTCCAGGTAAAGCGAAAAATTTATAT 58.864 33.333 0.00 0.00 0.00 0.86
81 82 7.121463 TGCTCCAGGTAAAGCGAAAAATTTATA 59.879 33.333 0.00 0.00 41.51 0.98
82 83 6.071616 TGCTCCAGGTAAAGCGAAAAATTTAT 60.072 34.615 0.00 0.00 41.51 1.40
83 84 5.241949 TGCTCCAGGTAAAGCGAAAAATTTA 59.758 36.000 0.00 0.00 41.51 1.40
84 85 4.038642 TGCTCCAGGTAAAGCGAAAAATTT 59.961 37.500 0.00 0.00 41.51 1.82
85 86 3.572255 TGCTCCAGGTAAAGCGAAAAATT 59.428 39.130 0.00 0.00 41.51 1.82
86 87 3.153919 TGCTCCAGGTAAAGCGAAAAAT 58.846 40.909 0.00 0.00 41.51 1.82
87 88 2.577700 TGCTCCAGGTAAAGCGAAAAA 58.422 42.857 0.00 0.00 41.51 1.94
88 89 2.264005 TGCTCCAGGTAAAGCGAAAA 57.736 45.000 0.00 0.00 41.51 2.29
89 90 2.489938 ATGCTCCAGGTAAAGCGAAA 57.510 45.000 0.00 0.00 41.51 3.46
90 91 2.489938 AATGCTCCAGGTAAAGCGAA 57.510 45.000 0.00 0.00 41.51 4.70
91 92 2.158957 CCTAATGCTCCAGGTAAAGCGA 60.159 50.000 0.00 0.00 41.51 4.93
92 93 2.213499 CCTAATGCTCCAGGTAAAGCG 58.787 52.381 0.00 0.00 41.51 4.68
93 94 1.950216 GCCTAATGCTCCAGGTAAAGC 59.050 52.381 0.00 0.00 39.02 3.51
94 95 2.173569 AGGCCTAATGCTCCAGGTAAAG 59.826 50.000 1.29 0.00 40.92 1.85
95 96 2.205342 AGGCCTAATGCTCCAGGTAAA 58.795 47.619 1.29 0.00 40.92 2.01
96 97 1.893315 AGGCCTAATGCTCCAGGTAA 58.107 50.000 1.29 0.00 40.92 2.85
97 98 1.490490 CAAGGCCTAATGCTCCAGGTA 59.510 52.381 5.16 0.00 40.92 3.08
98 99 0.257039 CAAGGCCTAATGCTCCAGGT 59.743 55.000 5.16 0.00 40.92 4.00
99 100 0.257039 ACAAGGCCTAATGCTCCAGG 59.743 55.000 5.16 0.00 40.92 4.45
100 101 2.092968 TGTACAAGGCCTAATGCTCCAG 60.093 50.000 5.16 0.00 40.92 3.86
101 102 1.912731 TGTACAAGGCCTAATGCTCCA 59.087 47.619 5.16 0.00 40.92 3.86
102 103 2.710096 TGTACAAGGCCTAATGCTCC 57.290 50.000 5.16 0.00 40.92 4.70
103 104 3.316308 CCATTGTACAAGGCCTAATGCTC 59.684 47.826 14.66 6.21 40.92 4.26
104 105 3.290710 CCATTGTACAAGGCCTAATGCT 58.709 45.455 14.66 3.12 40.92 3.79
105 106 2.362077 CCCATTGTACAAGGCCTAATGC 59.638 50.000 14.66 8.20 40.16 3.56
106 107 3.885297 CTCCCATTGTACAAGGCCTAATG 59.115 47.826 14.66 12.13 0.00 1.90
107 108 3.117512 CCTCCCATTGTACAAGGCCTAAT 60.118 47.826 14.66 0.00 0.00 1.73
108 109 2.241176 CCTCCCATTGTACAAGGCCTAA 59.759 50.000 14.66 0.00 0.00 2.69
109 110 1.843851 CCTCCCATTGTACAAGGCCTA 59.156 52.381 14.66 1.57 0.00 3.93
110 111 0.625849 CCTCCCATTGTACAAGGCCT 59.374 55.000 14.66 0.00 0.00 5.19
111 112 0.331616 ACCTCCCATTGTACAAGGCC 59.668 55.000 14.66 0.00 0.00 5.19
112 113 1.463674 CACCTCCCATTGTACAAGGC 58.536 55.000 14.66 0.00 0.00 4.35
113 114 1.004745 AGCACCTCCCATTGTACAAGG 59.995 52.381 14.65 13.92 0.00 3.61
114 115 2.496899 AGCACCTCCCATTGTACAAG 57.503 50.000 14.65 6.30 0.00 3.16
115 116 2.969821 AAGCACCTCCCATTGTACAA 57.030 45.000 11.41 11.41 0.00 2.41
116 117 2.238646 CCTAAGCACCTCCCATTGTACA 59.761 50.000 0.00 0.00 0.00 2.90
117 118 2.421529 CCCTAAGCACCTCCCATTGTAC 60.422 54.545 0.00 0.00 0.00 2.90
118 119 1.843851 CCCTAAGCACCTCCCATTGTA 59.156 52.381 0.00 0.00 0.00 2.41
119 120 0.625849 CCCTAAGCACCTCCCATTGT 59.374 55.000 0.00 0.00 0.00 2.71
120 121 0.918983 TCCCTAAGCACCTCCCATTG 59.081 55.000 0.00 0.00 0.00 2.82
121 122 1.566231 CTTCCCTAAGCACCTCCCATT 59.434 52.381 0.00 0.00 0.00 3.16
122 123 1.216990 CTTCCCTAAGCACCTCCCAT 58.783 55.000 0.00 0.00 0.00 4.00
123 124 0.178873 ACTTCCCTAAGCACCTCCCA 60.179 55.000 0.00 0.00 36.05 4.37
124 125 0.253327 CACTTCCCTAAGCACCTCCC 59.747 60.000 0.00 0.00 36.05 4.30
125 126 0.393132 GCACTTCCCTAAGCACCTCC 60.393 60.000 0.00 0.00 36.05 4.30
126 127 0.615850 AGCACTTCCCTAAGCACCTC 59.384 55.000 0.00 0.00 36.05 3.85
127 128 1.068121 AAGCACTTCCCTAAGCACCT 58.932 50.000 0.00 0.00 36.05 4.00
128 129 2.236395 TCTAAGCACTTCCCTAAGCACC 59.764 50.000 0.00 0.00 36.05 5.01
129 130 3.611766 TCTAAGCACTTCCCTAAGCAC 57.388 47.619 0.00 0.00 36.05 4.40
130 131 4.634012 TTTCTAAGCACTTCCCTAAGCA 57.366 40.909 0.00 0.00 36.05 3.91
131 132 5.959618 TTTTTCTAAGCACTTCCCTAAGC 57.040 39.130 0.00 0.00 36.05 3.09
132 133 9.841880 GTTTATTTTTCTAAGCACTTCCCTAAG 57.158 33.333 0.00 0.00 38.77 2.18
133 134 8.799367 GGTTTATTTTTCTAAGCACTTCCCTAA 58.201 33.333 0.00 0.00 0.00 2.69
134 135 7.945664 TGGTTTATTTTTCTAAGCACTTCCCTA 59.054 33.333 0.00 0.00 0.00 3.53
135 136 6.780522 TGGTTTATTTTTCTAAGCACTTCCCT 59.219 34.615 0.00 0.00 0.00 4.20
136 137 6.988522 TGGTTTATTTTTCTAAGCACTTCCC 58.011 36.000 0.00 0.00 0.00 3.97
137 138 7.808381 GTCTGGTTTATTTTTCTAAGCACTTCC 59.192 37.037 0.00 0.00 0.00 3.46
138 139 8.568794 AGTCTGGTTTATTTTTCTAAGCACTTC 58.431 33.333 0.00 0.00 0.00 3.01
139 140 8.465273 AGTCTGGTTTATTTTTCTAAGCACTT 57.535 30.769 0.00 0.00 0.00 3.16
140 141 8.465273 AAGTCTGGTTTATTTTTCTAAGCACT 57.535 30.769 0.00 0.00 0.00 4.40
141 142 9.529325 AAAAGTCTGGTTTATTTTTCTAAGCAC 57.471 29.630 0.00 0.00 0.00 4.40
142 143 9.744468 GAAAAGTCTGGTTTATTTTTCTAAGCA 57.256 29.630 0.00 0.00 35.77 3.91
143 144 9.967346 AGAAAAGTCTGGTTTATTTTTCTAAGC 57.033 29.630 8.32 0.00 42.84 3.09
150 151 9.529325 GTGCTTAAGAAAAGTCTGGTTTATTTT 57.471 29.630 6.67 0.00 33.05 1.82
151 152 8.141909 GGTGCTTAAGAAAAGTCTGGTTTATTT 58.858 33.333 6.67 0.00 33.05 1.40
152 153 7.521585 CGGTGCTTAAGAAAAGTCTGGTTTATT 60.522 37.037 6.67 0.00 33.05 1.40
153 154 6.072673 CGGTGCTTAAGAAAAGTCTGGTTTAT 60.073 38.462 6.67 0.00 33.05 1.40
154 155 5.237779 CGGTGCTTAAGAAAAGTCTGGTTTA 59.762 40.000 6.67 0.00 33.05 2.01
155 156 4.036380 CGGTGCTTAAGAAAAGTCTGGTTT 59.964 41.667 6.67 0.00 33.05 3.27
156 157 3.564225 CGGTGCTTAAGAAAAGTCTGGTT 59.436 43.478 6.67 0.00 33.05 3.67
157 158 3.139077 CGGTGCTTAAGAAAAGTCTGGT 58.861 45.455 6.67 0.00 33.05 4.00
158 159 2.484264 CCGGTGCTTAAGAAAAGTCTGG 59.516 50.000 6.67 0.00 33.05 3.86
159 160 3.058914 CACCGGTGCTTAAGAAAAGTCTG 60.059 47.826 24.02 0.00 33.05 3.51
160 161 3.139077 CACCGGTGCTTAAGAAAAGTCT 58.861 45.455 24.02 0.00 34.72 3.24
161 162 3.537793 CACCGGTGCTTAAGAAAAGTC 57.462 47.619 24.02 0.00 0.00 3.01
174 175 2.418628 CCTGTACAAATAAGCACCGGTG 59.581 50.000 30.66 30.66 0.00 4.94
175 176 2.303600 TCCTGTACAAATAAGCACCGGT 59.696 45.455 0.00 0.00 0.00 5.28
176 177 2.980568 TCCTGTACAAATAAGCACCGG 58.019 47.619 0.00 0.00 0.00 5.28
177 178 5.462398 GTCTATCCTGTACAAATAAGCACCG 59.538 44.000 0.00 0.00 0.00 4.94
178 179 5.462398 CGTCTATCCTGTACAAATAAGCACC 59.538 44.000 0.00 0.00 0.00 5.01
179 180 5.050972 GCGTCTATCCTGTACAAATAAGCAC 60.051 44.000 0.00 0.00 0.00 4.40
180 181 5.047847 GCGTCTATCCTGTACAAATAAGCA 58.952 41.667 0.00 0.00 0.00 3.91
181 182 5.290386 AGCGTCTATCCTGTACAAATAAGC 58.710 41.667 0.00 4.79 0.00 3.09
182 183 8.753175 GTTAAGCGTCTATCCTGTACAAATAAG 58.247 37.037 0.00 0.00 0.00 1.73
183 184 8.472413 AGTTAAGCGTCTATCCTGTACAAATAA 58.528 33.333 0.00 0.00 0.00 1.40
184 185 8.004087 AGTTAAGCGTCTATCCTGTACAAATA 57.996 34.615 0.00 0.00 0.00 1.40
185 186 6.875076 AGTTAAGCGTCTATCCTGTACAAAT 58.125 36.000 0.00 0.00 0.00 2.32
186 187 6.276832 AGTTAAGCGTCTATCCTGTACAAA 57.723 37.500 0.00 0.00 0.00 2.83
187 188 5.909621 AGTTAAGCGTCTATCCTGTACAA 57.090 39.130 0.00 0.00 0.00 2.41
188 189 7.024340 CTTAGTTAAGCGTCTATCCTGTACA 57.976 40.000 0.00 0.00 0.00 2.90
202 203 8.263734 TTCTACAGGAGAAACGCTTAGTTAAGC 61.264 40.741 12.72 12.72 46.02 3.09
203 204 6.618811 TCTACAGGAGAAACGCTTAGTTAAG 58.381 40.000 0.00 0.00 43.37 1.85
204 205 6.579666 TCTACAGGAGAAACGCTTAGTTAA 57.420 37.500 0.00 0.00 43.37 2.01
205 206 6.579666 TTCTACAGGAGAAACGCTTAGTTA 57.420 37.500 0.00 0.00 43.37 2.24
206 207 5.464030 TTCTACAGGAGAAACGCTTAGTT 57.536 39.130 0.00 0.00 46.76 2.24
216 217 3.132289 CGGTGCCTATTTCTACAGGAGAA 59.868 47.826 0.00 0.00 42.69 2.87
217 218 2.693591 CGGTGCCTATTTCTACAGGAGA 59.306 50.000 0.00 0.00 33.42 3.71
218 219 2.224066 CCGGTGCCTATTTCTACAGGAG 60.224 54.545 0.00 0.00 33.42 3.69
219 220 1.760613 CCGGTGCCTATTTCTACAGGA 59.239 52.381 0.00 0.00 33.42 3.86
220 221 1.485066 ACCGGTGCCTATTTCTACAGG 59.515 52.381 6.12 0.00 35.04 4.00
221 222 2.550978 CACCGGTGCCTATTTCTACAG 58.449 52.381 24.02 0.00 0.00 2.74
222 223 2.684001 CACCGGTGCCTATTTCTACA 57.316 50.000 24.02 0.00 0.00 2.74
234 235 3.669557 CGGATTTTTCTAAAGCACCGGTG 60.670 47.826 30.66 30.66 36.11 4.94
235 236 2.486592 CGGATTTTTCTAAAGCACCGGT 59.513 45.455 0.00 0.00 36.11 5.28
236 237 2.159435 CCGGATTTTTCTAAAGCACCGG 60.159 50.000 0.00 0.00 44.08 5.28
237 238 2.486592 ACCGGATTTTTCTAAAGCACCG 59.513 45.455 9.46 0.00 37.73 4.94
238 239 4.514781 AACCGGATTTTTCTAAAGCACC 57.485 40.909 9.46 0.00 31.34 5.01
239 240 8.528917 AAATAAACCGGATTTTTCTAAAGCAC 57.471 30.769 9.46 0.00 31.34 4.40
240 241 9.549078 AAAAATAAACCGGATTTTTCTAAAGCA 57.451 25.926 9.46 0.00 40.70 3.91
248 249 9.719355 ATGCTTAGAAAAATAAACCGGATTTTT 57.281 25.926 19.49 19.49 44.95 1.94
249 250 9.366216 GATGCTTAGAAAAATAAACCGGATTTT 57.634 29.630 9.46 7.56 37.96 1.82
250 251 8.749354 AGATGCTTAGAAAAATAAACCGGATTT 58.251 29.630 9.46 7.90 0.00 2.17
251 252 8.293699 AGATGCTTAGAAAAATAAACCGGATT 57.706 30.769 9.46 4.89 0.00 3.01
252 253 7.775561 AGAGATGCTTAGAAAAATAAACCGGAT 59.224 33.333 9.46 0.00 0.00 4.18
253 254 7.110155 AGAGATGCTTAGAAAAATAAACCGGA 58.890 34.615 9.46 0.00 0.00 5.14
254 255 7.281100 AGAGAGATGCTTAGAAAAATAAACCGG 59.719 37.037 0.00 0.00 0.00 5.28
255 256 8.202745 AGAGAGATGCTTAGAAAAATAAACCG 57.797 34.615 0.00 0.00 0.00 4.44
259 260 9.890629 TGCTTAGAGAGATGCTTAGAAAAATAA 57.109 29.630 0.00 0.00 0.00 1.40
260 261 9.319143 GTGCTTAGAGAGATGCTTAGAAAAATA 57.681 33.333 0.00 0.00 0.00 1.40
261 262 7.281999 GGTGCTTAGAGAGATGCTTAGAAAAAT 59.718 37.037 0.00 0.00 0.00 1.82
262 263 6.595716 GGTGCTTAGAGAGATGCTTAGAAAAA 59.404 38.462 0.00 0.00 0.00 1.94
263 264 6.070538 AGGTGCTTAGAGAGATGCTTAGAAAA 60.071 38.462 0.00 0.00 0.00 2.29
264 265 5.423610 AGGTGCTTAGAGAGATGCTTAGAAA 59.576 40.000 0.00 0.00 0.00 2.52
265 266 4.959210 AGGTGCTTAGAGAGATGCTTAGAA 59.041 41.667 0.00 0.00 0.00 2.10
266 267 4.541705 AGGTGCTTAGAGAGATGCTTAGA 58.458 43.478 0.00 0.00 0.00 2.10
267 268 4.935352 AGGTGCTTAGAGAGATGCTTAG 57.065 45.455 0.00 0.00 0.00 2.18
268 269 5.187772 TGAAAGGTGCTTAGAGAGATGCTTA 59.812 40.000 0.00 0.00 0.00 3.09
269 270 4.019860 TGAAAGGTGCTTAGAGAGATGCTT 60.020 41.667 0.00 0.00 0.00 3.91
270 271 3.517100 TGAAAGGTGCTTAGAGAGATGCT 59.483 43.478 0.00 0.00 0.00 3.79
271 272 3.866651 TGAAAGGTGCTTAGAGAGATGC 58.133 45.455 0.00 0.00 0.00 3.91
272 273 5.879223 ACAATGAAAGGTGCTTAGAGAGATG 59.121 40.000 0.00 0.00 0.00 2.90
273 274 6.059787 ACAATGAAAGGTGCTTAGAGAGAT 57.940 37.500 0.00 0.00 0.00 2.75
274 275 5.489792 ACAATGAAAGGTGCTTAGAGAGA 57.510 39.130 0.00 0.00 0.00 3.10
275 276 6.166279 TGTACAATGAAAGGTGCTTAGAGAG 58.834 40.000 0.00 0.00 0.00 3.20
276 277 6.109156 TGTACAATGAAAGGTGCTTAGAGA 57.891 37.500 0.00 0.00 0.00 3.10
277 278 6.128172 CCTTGTACAATGAAAGGTGCTTAGAG 60.128 42.308 9.13 0.00 36.50 2.43
278 279 5.705441 CCTTGTACAATGAAAGGTGCTTAGA 59.295 40.000 9.13 0.00 36.50 2.10
279 280 5.619981 GCCTTGTACAATGAAAGGTGCTTAG 60.620 44.000 14.26 0.00 42.13 2.18
280 281 4.217550 GCCTTGTACAATGAAAGGTGCTTA 59.782 41.667 14.26 0.00 42.13 3.09
281 282 3.005791 GCCTTGTACAATGAAAGGTGCTT 59.994 43.478 14.26 0.00 42.13 3.91
282 283 2.558359 GCCTTGTACAATGAAAGGTGCT 59.442 45.455 14.26 0.00 42.13 4.40
283 284 2.352715 GGCCTTGTACAATGAAAGGTGC 60.353 50.000 14.26 5.47 42.13 5.01
284 285 3.157087 AGGCCTTGTACAATGAAAGGTG 58.843 45.455 14.26 0.00 42.13 4.00
285 286 3.525800 AGGCCTTGTACAATGAAAGGT 57.474 42.857 14.26 0.00 42.13 3.50
286 287 5.010282 ACTAAGGCCTTGTACAATGAAAGG 58.990 41.667 28.77 10.22 42.86 3.11
287 288 5.473504 ACACTAAGGCCTTGTACAATGAAAG 59.526 40.000 28.77 15.03 0.00 2.62
288 289 5.381757 ACACTAAGGCCTTGTACAATGAAA 58.618 37.500 28.77 2.40 0.00 2.69
289 290 4.980573 ACACTAAGGCCTTGTACAATGAA 58.019 39.130 28.77 3.22 0.00 2.57
290 291 4.564821 GGACACTAAGGCCTTGTACAATGA 60.565 45.833 28.77 4.02 44.70 2.57
291 292 3.689649 GGACACTAAGGCCTTGTACAATG 59.310 47.826 28.77 17.23 44.70 2.82
292 293 3.951663 GGACACTAAGGCCTTGTACAAT 58.048 45.455 28.77 8.35 44.70 2.71
293 294 3.412237 GGACACTAAGGCCTTGTACAA 57.588 47.619 28.77 8.28 44.70 2.41
302 303 1.454201 GCTCTTTGGGACACTAAGGC 58.546 55.000 0.00 0.00 39.29 4.35
303 304 1.676014 CGGCTCTTTGGGACACTAAGG 60.676 57.143 0.00 0.00 39.29 2.69
304 305 1.676014 CCGGCTCTTTGGGACACTAAG 60.676 57.143 0.00 0.00 39.29 2.18
305 306 0.323629 CCGGCTCTTTGGGACACTAA 59.676 55.000 0.00 0.00 39.29 2.24
306 307 0.834687 ACCGGCTCTTTGGGACACTA 60.835 55.000 0.00 0.00 39.29 2.74
307 308 2.113243 GACCGGCTCTTTGGGACACT 62.113 60.000 0.00 0.00 39.29 3.55
308 309 1.671379 GACCGGCTCTTTGGGACAC 60.671 63.158 0.00 0.00 39.29 3.67
309 310 1.701031 TTGACCGGCTCTTTGGGACA 61.701 55.000 0.00 0.00 0.00 4.02
310 311 0.322546 ATTGACCGGCTCTTTGGGAC 60.323 55.000 0.00 0.00 0.00 4.46
311 312 1.209504 CTATTGACCGGCTCTTTGGGA 59.790 52.381 0.00 0.00 0.00 4.37
312 313 1.209504 TCTATTGACCGGCTCTTTGGG 59.790 52.381 0.00 0.00 0.00 4.12
313 314 2.678336 GTTCTATTGACCGGCTCTTTGG 59.322 50.000 0.00 0.00 0.00 3.28
314 315 3.600388 AGTTCTATTGACCGGCTCTTTG 58.400 45.455 0.00 0.00 0.00 2.77
315 316 3.983044 AGTTCTATTGACCGGCTCTTT 57.017 42.857 0.00 0.00 0.00 2.52
316 317 3.260884 TCAAGTTCTATTGACCGGCTCTT 59.739 43.478 0.00 0.00 34.31 2.85
317 318 2.832129 TCAAGTTCTATTGACCGGCTCT 59.168 45.455 0.00 0.00 34.31 4.09
318 319 3.190874 CTCAAGTTCTATTGACCGGCTC 58.809 50.000 0.00 0.00 35.40 4.70
319 320 2.093447 CCTCAAGTTCTATTGACCGGCT 60.093 50.000 0.00 0.00 35.40 5.52
320 321 2.280628 CCTCAAGTTCTATTGACCGGC 58.719 52.381 0.00 0.00 35.40 6.13
321 322 2.906354 CCCTCAAGTTCTATTGACCGG 58.094 52.381 0.00 0.00 35.40 5.28
322 323 2.093447 AGCCCTCAAGTTCTATTGACCG 60.093 50.000 0.00 0.00 35.40 4.79
323 324 3.536570 GAGCCCTCAAGTTCTATTGACC 58.463 50.000 0.00 0.00 35.40 4.02
324 325 3.190874 CGAGCCCTCAAGTTCTATTGAC 58.809 50.000 0.00 0.00 35.40 3.18
325 326 2.168521 CCGAGCCCTCAAGTTCTATTGA 59.831 50.000 0.00 0.00 37.60 2.57
326 327 2.555199 CCGAGCCCTCAAGTTCTATTG 58.445 52.381 0.00 0.00 0.00 1.90
327 328 1.486726 CCCGAGCCCTCAAGTTCTATT 59.513 52.381 0.00 0.00 0.00 1.73
328 329 1.123928 CCCGAGCCCTCAAGTTCTAT 58.876 55.000 0.00 0.00 0.00 1.98
329 330 1.614241 GCCCGAGCCCTCAAGTTCTA 61.614 60.000 0.00 0.00 0.00 2.10
330 331 2.960688 GCCCGAGCCCTCAAGTTCT 61.961 63.158 0.00 0.00 0.00 3.01
331 332 2.436824 GCCCGAGCCCTCAAGTTC 60.437 66.667 0.00 0.00 0.00 3.01
352 353 3.123453 TCGATGAAGAAATGTGCGTTGAG 59.877 43.478 0.00 0.00 0.00 3.02
353 354 3.063485 TCGATGAAGAAATGTGCGTTGA 58.937 40.909 0.00 0.00 0.00 3.18
354 355 3.155998 GTCGATGAAGAAATGTGCGTTG 58.844 45.455 0.00 0.00 0.00 4.10
355 356 2.805671 TGTCGATGAAGAAATGTGCGTT 59.194 40.909 0.00 0.00 0.00 4.84
356 357 2.412870 TGTCGATGAAGAAATGTGCGT 58.587 42.857 0.00 0.00 0.00 5.24
357 358 3.544834 GGATGTCGATGAAGAAATGTGCG 60.545 47.826 0.00 0.00 0.00 5.34
358 359 3.624861 AGGATGTCGATGAAGAAATGTGC 59.375 43.478 0.00 0.00 0.00 4.57
359 360 4.872124 TCAGGATGTCGATGAAGAAATGTG 59.128 41.667 0.00 0.00 37.40 3.21
360 361 5.089970 TCAGGATGTCGATGAAGAAATGT 57.910 39.130 0.00 0.00 37.40 2.71
361 362 5.354767 TCTCAGGATGTCGATGAAGAAATG 58.645 41.667 0.00 0.00 37.40 2.32
362 363 5.604758 TCTCAGGATGTCGATGAAGAAAT 57.395 39.130 0.00 0.00 37.40 2.17
363 364 5.127682 TCATCTCAGGATGTCGATGAAGAAA 59.872 40.000 5.99 0.00 44.46 2.52
364 365 4.646492 TCATCTCAGGATGTCGATGAAGAA 59.354 41.667 5.99 0.00 44.46 2.52
365 366 4.210331 TCATCTCAGGATGTCGATGAAGA 58.790 43.478 5.99 0.00 44.46 2.87
366 367 4.581077 TCATCTCAGGATGTCGATGAAG 57.419 45.455 5.99 0.00 44.46 3.02
369 370 4.804665 GCATATCATCTCAGGATGTCGATG 59.195 45.833 5.99 8.56 46.74 3.84
370 371 4.439837 CGCATATCATCTCAGGATGTCGAT 60.440 45.833 5.99 0.00 46.74 3.59
371 372 3.119708 CGCATATCATCTCAGGATGTCGA 60.120 47.826 5.99 0.00 46.74 4.20
372 373 3.177487 CGCATATCATCTCAGGATGTCG 58.823 50.000 5.99 0.00 46.74 4.35
373 374 3.194329 TCCGCATATCATCTCAGGATGTC 59.806 47.826 5.99 0.00 46.74 3.06
374 375 3.168292 TCCGCATATCATCTCAGGATGT 58.832 45.455 5.99 0.00 46.74 3.06
376 377 4.468868 TCAATCCGCATATCATCTCAGGAT 59.531 41.667 0.00 0.00 38.52 3.24
377 378 3.834231 TCAATCCGCATATCATCTCAGGA 59.166 43.478 0.00 0.00 0.00 3.86
378 379 4.198028 TCAATCCGCATATCATCTCAGG 57.802 45.455 0.00 0.00 0.00 3.86
379 380 4.992951 TGTTCAATCCGCATATCATCTCAG 59.007 41.667 0.00 0.00 0.00 3.35
380 381 4.959723 TGTTCAATCCGCATATCATCTCA 58.040 39.130 0.00 0.00 0.00 3.27
381 382 6.148315 TCAATGTTCAATCCGCATATCATCTC 59.852 38.462 0.00 0.00 0.00 2.75
382 383 5.999600 TCAATGTTCAATCCGCATATCATCT 59.000 36.000 0.00 0.00 0.00 2.90
383 384 6.245115 TCAATGTTCAATCCGCATATCATC 57.755 37.500 0.00 0.00 0.00 2.92
384 385 6.294342 CCTTCAATGTTCAATCCGCATATCAT 60.294 38.462 0.00 0.00 0.00 2.45
385 386 5.008911 CCTTCAATGTTCAATCCGCATATCA 59.991 40.000 0.00 0.00 0.00 2.15
386 387 5.009010 ACCTTCAATGTTCAATCCGCATATC 59.991 40.000 0.00 0.00 0.00 1.63
387 388 4.889409 ACCTTCAATGTTCAATCCGCATAT 59.111 37.500 0.00 0.00 0.00 1.78
388 389 4.269183 ACCTTCAATGTTCAATCCGCATA 58.731 39.130 0.00 0.00 0.00 3.14
389 390 3.091545 ACCTTCAATGTTCAATCCGCAT 58.908 40.909 0.00 0.00 0.00 4.73
390 391 2.513753 ACCTTCAATGTTCAATCCGCA 58.486 42.857 0.00 0.00 0.00 5.69
391 392 3.501950 GAACCTTCAATGTTCAATCCGC 58.498 45.455 0.98 0.00 41.35 5.54
392 393 3.505680 TGGAACCTTCAATGTTCAATCCG 59.494 43.478 7.72 0.00 43.05 4.18
393 394 5.665916 ATGGAACCTTCAATGTTCAATCC 57.334 39.130 7.72 0.00 43.05 3.01
394 395 6.810182 CAGAATGGAACCTTCAATGTTCAATC 59.190 38.462 7.72 3.17 43.05 2.67
395 396 6.694447 CAGAATGGAACCTTCAATGTTCAAT 58.306 36.000 7.72 0.00 43.05 2.57
396 397 6.088016 CAGAATGGAACCTTCAATGTTCAA 57.912 37.500 7.72 0.00 43.05 2.69
397 398 5.710513 CAGAATGGAACCTTCAATGTTCA 57.289 39.130 7.72 0.00 43.05 3.18
444 445 2.953669 GCAAAGGAATGCATCGCTG 58.046 52.632 0.00 0.00 45.70 5.18
504 509 4.557895 GCCACGTTGCCTTTTACAAATACT 60.558 41.667 0.00 0.00 0.00 2.12
505 510 3.671459 GCCACGTTGCCTTTTACAAATAC 59.329 43.478 0.00 0.00 0.00 1.89
510 515 0.382515 GTGCCACGTTGCCTTTTACA 59.617 50.000 9.38 0.00 0.00 2.41
532 537 9.666626 CCACGTTTTATTTTGTGAGTATGTTAA 57.333 29.630 0.00 0.00 34.29 2.01
537 542 6.146898 GTGCCACGTTTTATTTTGTGAGTAT 58.853 36.000 0.00 0.00 34.29 2.12
543 548 2.099427 ACCGTGCCACGTTTTATTTTGT 59.901 40.909 16.99 0.14 40.58 2.83
569 577 0.037590 AAGGGCGCCATAAACTGACA 59.962 50.000 30.85 0.00 0.00 3.58
604 612 6.159293 ACATATATGAACATCGAGATTGCGT 58.841 36.000 19.63 0.00 0.00 5.24
605 613 6.638168 ACATATATGAACATCGAGATTGCG 57.362 37.500 19.63 0.00 0.00 4.85
606 614 8.694975 ACTACATATATGAACATCGAGATTGC 57.305 34.615 19.63 0.00 0.00 3.56
612 620 9.428097 ACGTAGTACTACATATATGAACATCGA 57.572 33.333 28.03 0.00 41.94 3.59
693 732 2.029918 CCGATCGGCTCACTGATGATTA 60.030 50.000 23.37 0.00 42.19 1.75
759 801 3.181470 TGCCTAGCTTGATTGTGCGTATA 60.181 43.478 0.00 0.00 0.00 1.47
836 886 0.096454 GCGTACGTTTCAGGAATGCC 59.904 55.000 17.90 0.00 0.00 4.40
837 887 0.247145 CGCGTACGTTTCAGGAATGC 60.247 55.000 17.90 0.00 33.53 3.56
839 889 1.680105 CGCGCGTACGTTTCAGGAAT 61.680 55.000 24.19 0.00 42.83 3.01
840 890 2.366584 CGCGCGTACGTTTCAGGAA 61.367 57.895 24.19 0.00 42.83 3.36
841 891 2.801996 CGCGCGTACGTTTCAGGA 60.802 61.111 24.19 0.00 42.83 3.86
919 978 4.068282 CGTGTGCGTGCTCTGCAG 62.068 66.667 7.63 7.63 44.21 4.41
937 996 4.290942 AGGTAGCTCTAGTAATGCAAGGT 58.709 43.478 0.00 0.00 0.00 3.50
947 1006 1.007238 TGGCTGGAAGGTAGCTCTAGT 59.993 52.381 0.00 0.00 40.92 2.57
950 1009 0.545309 TGTGGCTGGAAGGTAGCTCT 60.545 55.000 0.00 0.00 40.92 4.09
951 1010 0.324943 TTGTGGCTGGAAGGTAGCTC 59.675 55.000 0.00 0.00 40.92 4.09
1458 1531 2.802667 CTACGTGCGTGCTCATGGC 61.803 63.158 7.55 0.00 42.22 4.40
1563 1638 1.782569 CAAGCAAAATGAGTGCACGTG 59.217 47.619 12.28 12.28 44.74 4.49
1598 1673 6.663093 ACAGGTCCAAATATGATTGCAAACTA 59.337 34.615 1.71 0.00 0.00 2.24
1633 2027 2.118313 TATGTTCCGTCAGTCGAGGA 57.882 50.000 0.00 0.00 42.86 3.71
1635 2029 3.571571 TGTTTATGTTCCGTCAGTCGAG 58.428 45.455 0.00 0.00 42.86 4.04
1638 2131 5.694910 TCTTCTTGTTTATGTTCCGTCAGTC 59.305 40.000 0.00 0.00 0.00 3.51
1640 2133 5.926542 TCTCTTCTTGTTTATGTTCCGTCAG 59.073 40.000 0.00 0.00 0.00 3.51
1655 2148 8.606040 AATTTGTCTTCTTCTCTCTCTTCTTG 57.394 34.615 0.00 0.00 0.00 3.02
1790 2376 4.141597 TGTTCTCATGTGTCTACAAACCCA 60.142 41.667 0.00 0.00 40.84 4.51
1857 2448 5.454062 TCCCATGATACCAATCCGAAAAAT 58.546 37.500 0.00 0.00 0.00 1.82
1863 2454 1.072173 TGCTCCCATGATACCAATCCG 59.928 52.381 0.00 0.00 0.00 4.18
1864 2455 2.957402 TGCTCCCATGATACCAATCC 57.043 50.000 0.00 0.00 0.00 3.01
1865 2456 7.341805 ACTTATATGCTCCCATGATACCAATC 58.658 38.462 0.00 0.00 32.85 2.67
1891 2482 7.905649 AGAGGGAGAATATCAGGTGATATCAAT 59.094 37.037 7.07 0.00 44.51 2.57
1895 2486 9.041354 GTAAAGAGGGAGAATATCAGGTGATAT 57.959 37.037 6.66 6.66 46.54 1.63
1960 2558 4.227300 ACTGCCTGGAGGTTATCACAAATA 59.773 41.667 0.00 0.00 37.57 1.40
1961 2559 3.010584 ACTGCCTGGAGGTTATCACAAAT 59.989 43.478 0.00 0.00 37.57 2.32
1962 2560 2.375174 ACTGCCTGGAGGTTATCACAAA 59.625 45.455 0.00 0.00 37.57 2.83
1963 2561 1.985159 ACTGCCTGGAGGTTATCACAA 59.015 47.619 0.00 0.00 37.57 3.33
1990 2588 7.177832 TGATAAGTATTTTCAGACGGAGGAA 57.822 36.000 0.00 0.00 31.09 3.36
1992 2590 7.210174 TGATGATAAGTATTTTCAGACGGAGG 58.790 38.462 0.00 0.00 39.34 4.30
1993 2591 8.648557 TTGATGATAAGTATTTTCAGACGGAG 57.351 34.615 0.00 0.00 39.34 4.63
1994 2592 9.443323 TTTTGATGATAAGTATTTTCAGACGGA 57.557 29.630 0.00 0.00 39.34 4.69
2145 2743 9.834628 GTCCGAAAATACTTGTTATCAAAATGA 57.165 29.630 0.00 0.00 32.87 2.57
2146 2744 8.785101 CGTCCGAAAATACTTGTTATCAAAATG 58.215 33.333 0.00 0.00 32.87 2.32
2147 2745 7.966204 CCGTCCGAAAATACTTGTTATCAAAAT 59.034 33.333 0.00 0.00 32.87 1.82
2148 2746 7.172875 TCCGTCCGAAAATACTTGTTATCAAAA 59.827 33.333 0.00 0.00 32.87 2.44
2149 2747 6.649973 TCCGTCCGAAAATACTTGTTATCAAA 59.350 34.615 0.00 0.00 32.87 2.69
2150 2748 6.164876 TCCGTCCGAAAATACTTGTTATCAA 58.835 36.000 0.00 0.00 0.00 2.57
2151 2749 5.722263 TCCGTCCGAAAATACTTGTTATCA 58.278 37.500 0.00 0.00 0.00 2.15
2152 2750 5.233689 CCTCCGTCCGAAAATACTTGTTATC 59.766 44.000 0.00 0.00 0.00 1.75
2153 2751 5.105228 TCCTCCGTCCGAAAATACTTGTTAT 60.105 40.000 0.00 0.00 0.00 1.89
2154 2752 4.220382 TCCTCCGTCCGAAAATACTTGTTA 59.780 41.667 0.00 0.00 0.00 2.41
2155 2753 3.007182 TCCTCCGTCCGAAAATACTTGTT 59.993 43.478 0.00 0.00 0.00 2.83
2156 2754 2.564062 TCCTCCGTCCGAAAATACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
2157 2755 3.241067 TCCTCCGTCCGAAAATACTTG 57.759 47.619 0.00 0.00 0.00 3.16
2158 2756 3.449737 TGATCCTCCGTCCGAAAATACTT 59.550 43.478 0.00 0.00 0.00 2.24
2159 2757 3.028850 TGATCCTCCGTCCGAAAATACT 58.971 45.455 0.00 0.00 0.00 2.12
2160 2758 3.447918 TGATCCTCCGTCCGAAAATAC 57.552 47.619 0.00 0.00 0.00 1.89
2161 2759 5.794726 TTATGATCCTCCGTCCGAAAATA 57.205 39.130 0.00 0.00 0.00 1.40
2162 2760 4.682778 TTATGATCCTCCGTCCGAAAAT 57.317 40.909 0.00 0.00 0.00 1.82
2163 2761 4.475051 TTTATGATCCTCCGTCCGAAAA 57.525 40.909 0.00 0.00 0.00 2.29
2164 2762 4.439057 CTTTTATGATCCTCCGTCCGAAA 58.561 43.478 0.00 0.00 0.00 3.46
2165 2763 3.740141 GCTTTTATGATCCTCCGTCCGAA 60.740 47.826 0.00 0.00 0.00 4.30
2166 2764 2.223971 GCTTTTATGATCCTCCGTCCGA 60.224 50.000 0.00 0.00 0.00 4.55
2167 2765 2.135933 GCTTTTATGATCCTCCGTCCG 58.864 52.381 0.00 0.00 0.00 4.79
2168 2766 3.477210 AGCTTTTATGATCCTCCGTCC 57.523 47.619 0.00 0.00 0.00 4.79
2169 2767 5.123979 ACAAAAGCTTTTATGATCCTCCGTC 59.876 40.000 23.44 0.00 0.00 4.79
2170 2768 5.010282 ACAAAAGCTTTTATGATCCTCCGT 58.990 37.500 23.44 10.67 0.00 4.69
2171 2769 5.567138 ACAAAAGCTTTTATGATCCTCCG 57.433 39.130 23.44 10.06 0.00 4.63
2205 2803 3.043419 CTCTATCCCCGGCGTCTG 58.957 66.667 6.01 0.00 0.00 3.51
2208 2806 2.444140 AAGCTCTATCCCCGGCGT 60.444 61.111 6.01 0.00 0.00 5.68
2211 2809 1.996798 TAGTGAAGCTCTATCCCCGG 58.003 55.000 0.00 0.00 0.00 5.73
2213 2811 4.262678 GGTGATTAGTGAAGCTCTATCCCC 60.263 50.000 0.00 0.00 0.00 4.81
2237 2835 1.087501 CGGGAAGCTTTAGAGGCAAC 58.912 55.000 0.00 0.00 0.00 4.17
2255 2853 6.258727 GGCCATATATCTCATGATACAAACCG 59.741 42.308 0.00 0.00 37.92 4.44
2265 2863 7.714377 GTGAAATAGGAGGCCATATATCTCATG 59.286 40.741 5.01 0.00 0.00 3.07
2266 2864 7.404104 TGTGAAATAGGAGGCCATATATCTCAT 59.596 37.037 5.01 0.00 0.00 2.90
2267 2865 6.730507 TGTGAAATAGGAGGCCATATATCTCA 59.269 38.462 5.01 0.00 0.00 3.27
2269 2867 6.732862 AGTGTGAAATAGGAGGCCATATATCT 59.267 38.462 5.01 0.00 0.00 1.98
2270 2868 6.951971 AGTGTGAAATAGGAGGCCATATATC 58.048 40.000 5.01 0.00 0.00 1.63
2271 2869 6.959606 AGTGTGAAATAGGAGGCCATATAT 57.040 37.500 5.01 0.00 0.00 0.86
2272 2870 6.763715 AAGTGTGAAATAGGAGGCCATATA 57.236 37.500 5.01 0.00 0.00 0.86
2273 2871 5.653255 AAGTGTGAAATAGGAGGCCATAT 57.347 39.130 5.01 0.00 0.00 1.78
2274 2872 5.665812 ACTAAGTGTGAAATAGGAGGCCATA 59.334 40.000 5.01 0.00 0.00 2.74
2275 2873 4.475016 ACTAAGTGTGAAATAGGAGGCCAT 59.525 41.667 5.01 0.00 0.00 4.40
2276 2874 3.844211 ACTAAGTGTGAAATAGGAGGCCA 59.156 43.478 5.01 0.00 0.00 5.36
2277 2875 4.489306 ACTAAGTGTGAAATAGGAGGCC 57.511 45.455 0.00 0.00 0.00 5.19
2340 2938 1.173913 AAAAATGCTAGTGGGCCGAC 58.826 50.000 10.38 10.38 0.00 4.79
2402 3000 9.672673 TTCATAAACTGGAACCAATTTGAAAAA 57.327 25.926 9.98 0.00 0.00 1.94


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.