>input_sequence_79406
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------------------ATGGCGCCCGTCGTCAAGTTCGTCGTCGCCGC---CCTGCTAGTGCTTGCGGCCATCGCTGG
CCCTGGAGGCGTCGGCGTCGCCTCGGCCACCACCGGCGCTGCTGGCCCCGCGGCGGCGCCATCGCCGGCCCCACTCGTCG
CTCGCCTCCGCCTCGCGCTCTCGGGCATGGCGGAGGAGCAGCAGGGCGGCGGGTGGATGATGGAGTGCTGGGGCGCGGTG
ACGGAGCTGCGGT-----------CGTGCACCAGCGAGATCGTGCTCTTCTTCCTCAACGGCGAGTCCTACCTGGGCCGC
GACTGCTGCATCGCCATCCGCACCGTCACGCTCCACTGCTGGCCCTCCATGCTCGCCTCCATAGGCTTGACCGCCCAGGA
GGCCGACATCCTCCGCGGCTTCTGCGACGCTGAGATCCCACACGCTCCTCCCCCGCCGGCGCCGGCCGCCGTGCCGGCGC
CTGCTGCGCAGCCATGA---------------------------------------------------------------
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>chr4A_1_TraesCS4A01G208200
CGCCACATAGAAAACCCCAGGTTTGATACCGCGCCGATGGACTTCAGACCCAATAGCAAGACCATCTAACTAACATCCAC
ATATAAATTTTTCGCTTTACCTGGAGCATTAGGCCTTGTACAATGGGAGGTGCTTAGGGAAGTGCTTAGAAAAATAAACC
AGACTTTTCTTAAGCACCGGTGCTTATTTGTACAGGATAGACGCTTAACTAAGCGTTTCTCCTGTAGAAATAGGCACCGG
TGCTTTAGAAAAATCCGGTTTATTTTTCTAAGCATCTCTCTAAGCACCTTTCATTGTACAAGGCCTTAGTGTCCCAAAGA
GCCGGTCAATAGAACTTGAGGGCTCGGGCCGGCTCAACGCACATTTCTTCATCGACATCCTGAGATGATATGCGGATTGA
ACATTGAAGGTTCCATTCTGGCCTTGTTAACATTCCCAGTCGTGCAGC-GATGCATTCCTTTGCTCTTGAGTAATACATT
TCCTTTACCCTGT---AAAAAAAACTTTAGTATTTGTAAAAGGCAACGTGGCACGGTTAACATACTCACAAAATAAAACG
TGGCACGGTT---AACTGTCAGTTTATGGCGCCCTTTTACATTCGTTCCGCACGCAATCTC-------------------
----------GATGTTCATATATGTA-GTACTACGTGTGTACGTGCACGT-GGATCGTGATCCATGCAACATGATCAGAC
GCTGCAGGCGCTAATCATCAGTGAGCCGATCGGCTACCGCCGTTCCCGCGATCA---ATCGAGTTCGCTAGCGGGGCATC
TATACGCACAATCAAGCTAGGCAC----CATGCATGCATGCATGCATGGCGCAGCAACGCCCGC----CCGTGCGTCTCC
CCCGCGGCATTCC------TGAAACGTACGCGCGCCTCCTCCACTTCGCCTTCCAGGCACGTCG---ATCCACTATATAA
ACACGCCGCTAGTGCGTCTGCAGAGCACGCACACGACCTTGCATTACTAGAGCTACCTTCCAGCCACAAATCGCCGGGCA
TCTCTCGCCGGTCGATCGATGGCGCCCGTCGTCAAGTTCGTCGTCGCCGC---CCTGCTAGTGCTTGCGGCCATCGCTGG
CCCTGGAGGCGTCGGCGTCGCCTCGGCCACCACCGGCGCTGCTGGCCCCGCGGCGGCGCCATCGCCGGCCCCACTCGTCG
CTCGCCTCCGCCTCGCGCTCTCGGGCATGGCGGAGGAGCAGCAGGGCGGCGGGTGGATGATGGAGTGCTGGGGCGCGGTG
ACGGAGCTGCGGT-----------CGTGCACCAGCGAGATCGTGCTCTTCTTCCTCAACGGCGAGTCCTACCTGGGCCGC
GACTGCTGCATCGCCATCCGCACCGTCACGCTCCACTGCTGGCCCTCCATGCTCGCCTCCATAGGCTTGACCGCCCAGGA
GGCCGACATCCTCCGCGGCTTCTGCGACGCTGAGATCCCACACGCTCCTCCCCCGCCGGCGCCGGCCGCCGTGCCGGCGC
CTGCTGCGCAGCCATGAGCACGCACGTAGTAGTG--CACGTGTAATGTGCACACGCAAATGCGATGTAATAACACGACCT
TGAGGAAATAAAATACGGGCCGGCGCTCGTGCGTGCGCACGTGCACTCATTTTGCTTGGTTGTGTTAATATGTAGTTTGC
AATCATATTTGGACCTG---------------------------------------------------------------
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----------------TTAATTCGGTTCC---------------------------------------------------
------------------------------------------------TCGACTGACGGAACATAAACAAGAAGAGAGAG
AAG-----------------------------------------------------------------------------
-----------AAGACAAATTCAGC---ATAGTGTCAAGACAAAAGCCTGAATAATTTAAAAAACTACACCATTCACAAC
AGAGTA-TCTTTTTTGTTTGTCAATGTGTATCTAATTTGGATCTCAA-TTTTTTTTGGGTTTGTAGACACAT-----GAG
AACATCCATGATTTTTTCGGAATTTTATGAAACATTTAAATTTGATTATTTTTCGGATTGGTATCATGGGAGCATATAAG
TATTGATATCACCTGATATTCTC-CCTCTTTACCATAGCTCCATGGCTCACAAAATTAATCTCCT------TTTTTTTAT
TTGTGATAACCTCCAGGCAGTATATACTTCCTCCGTCTGAAAATACTTATCATCAAAATAAATAAAAGAGGATGTATCTA
GATGTATATTAGTTCTAGATACATCCATTTTTATCCATTTTAATGACAAAATAAAATGAGATGTATCTAGATGTATATTA
GTTCTAGATACATCATTTTTATTCATTTTGATAACAAGTATTTTCGGACGGAGGATCATAAAAGCTTTTGTAGCATTAAG
ATCAGACGCCGGGGATAGAGCTTCACTAATCACCGTTGCCTCTAAAGCTTCCCGGTTTGTATCATGAGATATATGGCCTC
CTATTTCACACTTAGTGCGTTAAATAGAAGGCAAAACGCAAAAGCGGGTGCTGATCGGTCGGCCCACTAGCATTTTTTTC
TTGAATTGTTTATCTTTTAATTTTGTTTCATATTTTTCATTTTTCAAATTGGTTCCAGTTTATGAAAAAATGTTCAAAAT
TTCATAAACTTTTTCATAGTTT
>chr4D_409
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--------GGATCCATTCTGGCCTTGTTAACATTCCTAGTTTGTATAGGGATGCATTCCTTTGCTCTTGAGTAATACATT
TCCCTTACCCGCCAGAAAAAAAAACTTTTAC---------------------------AACTTACTCGCAAAATAAAATG
TGGCACGGTT---AACAGTGAGTTTATGGCGCCCTTTTACATTCGTTCCG------ATCAC-------------------
----------GATGTTCATATGTACG-----TACCTGTGTACGTGCACGT-GGATCGTGATCCATGCAACATGATCAAAC
GCTGCAGGCGCAAATCATCACTGAGCCGATCGGTTACCGCCGTTCCCGCGATCAATTATCAAGTTAGCTAGCGGGGCATC
AATACGCATAATCAAGCTAAGGCACCTGCATGCATGCATGCATGCATGGCGCAGCAACGCCCGCGCGCCCGTGCGTCTCC
CCCGCATC---CCTAACAGTGAAACGTACGCGCGCCTTCTCCACTTCGCCTTCCAGGCACGTCG---ATCCACTGTATAA
ACACGCCGCTGGTGCGTACGCAGAGCACGCACACGGCCTTGCATTGCT--AGCTACCTTGCGACCACAAATCGCCGGGCT
TCTCTCGCCGGTCGATCCATGGCGCCCGTCGTCAAGTTCGTCGTCGCCGC---TCTGCTAGTGTTCGTCGCCATCGCGGG
CCCCGGAGGCGTCGGCGTCGCCTCGGCCACCACCGGCGCTGCTGGCCCCGCGGCCGCGCCATCGCCGGCCCCACTCGTCG
CTCGCCTCCACCTCGCGCTCTCGGGCATGGAGGCGGAGCAGCAGGGCGGCGGGTGGATGATGGAGTGCTGGGGCGCGGTG
ACGGAGCTGCGGT-----------CGTGCACCAGCGAGATCGTGCTCTTCTTCCTCAACGGCGAGTCCTACCTGGGCCAC
GACTGCTGCATCGCCATCCGCACCGTCACGCTCCACTGCTGGCCCTCCATGCTCGCCTCCATAGGCTTGACCGCCCAGGA
GGCCGACATCCTCCGCGGCTTCTGCGACGCTGAGATTCCACACGCTCCTCCCCCGCCGGCGCCGGCCGCCGTGCCGGCGC
CTGCTGCGCAACCATGATCATGTATGCAGTAGTGTGCACCTGTACTGTGCACACGCACATGCGATGCAATAACACGACCT
TGAGGAAATAAATTACGGGCCAGCGCTCGTGCGTGCGTATGTGCACTCATTTTGTTTGGTTGTGTTAATATGCAGTTTGC
AATCATATTTGGACCTG---------------------------------------------------------------
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----------------TTAATTCGTTCCTCGACAACGTACATACATTCAGTTTTTTTCCCTGTCGAGATGGTATTTACTT
TACGGGTATGGCTACATCTCAGATGTCTAAGATTTAACCAAATCTTAGTCAAGTGGCGGAACATAAAAAAGAAGAGAGAG
AAATTTAAAATAAAATTTTGCACGGATCTTTACGTAGAATTAGATTAGCTGAATTCAGATCCAAATTCAATTTGTGCAAT
GGGAAAC-AAAAGGACAAATTCAGCATGAAAGTGTCAAGACAAAAGCATGAATAATTTCAAAAACTACACCATTCACAAC
AGATTTTCCTTTTTTGTTTGTCAAAGTGTATCTAATTTGGATCTAAA-T-TTTTTAGGGTTTGTAGACACAT-----GAG
AACATCGATGATTTTTTCAGAATTTTATGAAACATTTAAATTTGATTTTTTTTA--ATTGGTATCATGGGAG-----AAG
TGTTGGTATCACCTGATATTCTC-CCTCTTCACCATAGCTCCATGGCTCACAAAATTATTCTCCT------TTTTTT---
-TGTGATAACCTCCAGGCAGTTTATAC-----------------------------------------------------
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>chr4B_432
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-------------------------------ATTCCTAGTCTGTGTAGGGATGCATTCCTTTGCTTTTGGGTAATACATT
TCCTTTACCCCTCAAAAAAAATCTTTTATATATTCGTAAAAGGCAACGTGGCACGGGTAGCTTACTCGCAAAATAAAACG
TGGCAAAAGAAAAAACAGTCAGTTTATGGCGCCCTTTTACATTCGTTCCGCGATCATATGTACTTTCGTATGTACTTTCT
TTTGCGGGGAGATGTTCATATGTACTGGTACTACGTGTGTACGTGCACGTTGGACCGTGATCCATGCGACATGATCAGAC
GCTGCAGGCGCGAATCATCAGTGAGCCGATCGGCTACCGCCGTTCCCGTGATCAATTATCGAGTTCGCTAGCGGGGCATC
AATACGCACAATCAAGTTAGGCAC------------CATGCATGCATGGCGCAGCAACGCCCGC----CCGTGCGTCTCC
CCCGCATC---CC------TGAAACGTACGCGCGCCTCCTCCACTTCGCCTTCCGGGCACGTCGATCATCCACTATATAA
ACACGCCGCTAGTGCGTATGCAGAGCATGCACACGGCCTTGCATTGCT--AGCTACCTTGCAGCCACAAATCGCCGGGCA
TCTCTCGCCTGTCGATCGATGGCGCCCATCGTGAAGTTCGTCGTCGCCGCCGCCCTGATAGTGCTCGCGGCCGTCGCTGG
CCCCGGAGGCGTCGGCGTCGCCTCGGCCACCACCGGCGCTGCTGGCCCCGCGGCTGCGCCATCGCCGGCCCCACTCGTCG
CTCCCCTCCACCTCGCGCTCTCGGGCATGGCGGCGGAGCAGCAGGGCGGCGGGTGGATGATGGAGTGCTGGGGCGCGGTG
ACGGAGGCCCTATACAAACCGGGCCGTGCACCAACGAGATCGTGCTCTTCTTCCTCAACGGCGAGTCCTACCTGGGCCGC
GACTGCTGCATCGCCATCCGCACCATCACGCTCCACTGCTGGCCCTCCATGCTCGCCTCCATAGGCTTGACCGCCCACGA
GGCCGACATCCTCCGTGGCTTCTGCGACGCCGAGATCCCACACGCTCCTCCCCCGCCAGCGCCGGCCGTCGTGCCGGCGC
CTGCTGCGCAACCATGATCACGCACATAGTA--GTGCACTTGTACTGTGCACACGCAAATGCGATGTAATAACACGACCT
TGAGGAAATAAATTACGGGCCAGCGC------------ACGTGCACTAATTTTGCTTCGTTGTGTTAATATGCAGTTTGC
AATCATATTTGGACCTGCGAATCAACCTGTGGTTGAGTTGGTTAGGTGTACAGTGGTATCCTCAACCCACCAGGGTTCAA
ATCCTGGTGCTCGTATTATTTCTGGATTTATGTCAGGATTTCTGGCGATGCGATTTCAGTGGGAGGAGACGTTCCCGTCG
ACGACGAGGCGCCCACGGTGACTTCATAAATTTCAAGATGATATGCCGGCTCAGTCTTTCGGAGGTGCTCATAGGGGTAG
GGTGTGCGTGCGTGTGTTTATAGGGGTGAGTGTATGCACGTGTATATGATCGCTTGTGTCTATACTGGTGCTCAAAAAAA
ATTATATTTGGACCTGTTAATTCGTTCCTAGACAACGTACGTACATTCAGTTTTTTCCCTA-TCGACATGGTATTTACGT
TATGGGTATGGCTAGATCTCGGATG-----------ACCAAATCTTAGTCAAGTGACGGAACACAAAAAAGAAGAGAGGG
AAGTTTAAAACAAAATTTTGCACGGATCTTCACATAGAATTAGATTAGCTGAATTCAGATCCAAATTCAATTTGTGCAAT
GAGAAACAAAAAAGAGAAATTCAACATGATAGTGTCAAGACAAAAGCATGAATAATTTCAAAAACTGCAGCATTCACTAC
AGATTTCTCTTTTTTGTTTGTCAATGTGTATCTAATGGATCTGAATTTT-TTTTCAGGGTTTGTAGACACATATGATGAG
AACATCCATGATTTTT-CGTAATTTTATAAAACCTTTTTCT--------------------TATCATGGGAGCATACAAA
TGTTGGTATCACCTGATATTTCTGCCTCTTTACCATAGCTCGGTGGCTCACAAAATTATTCTTGTTTTTTATTTATT---
-TGTGATAACCTCCAGGCAGTATATACGTAAAAA----------------------------------------------
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----------------------------------------------------------------CTTTTGTAGCATTAAG
ATTAGCCGTCAGGGATAGAGCTTCACTAATCACCATTGCCTCTAAAGCTTCCGGGTTTGTATAGGGT----------CTC
CTATTTCACACTTAGTGCGTTAAATAGAAGGCAAAACACAAAAGCGGTTGCTGATCGCTCGGCCC-CTAGCATTTTTTCT
TTTTGTTTTGTTTTCGT--------TTTCATATTTTTCAGTTTTCAAATTGGTTCCTGTTTATGAAAAAATGTTCAAAAT
TTCAGAAATTTTTCATAGTTT-
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS--S-------------------------S----SSSSSSS--------------------------------
----------SSS---------------SS----S---------------------S----S-----S------------
----------------S----------------------------------SSS-----S--------------------
---------------------S-SSS------------------------------------------------------
-----------S--------------------------------------------------------------------
S-------------------------------------------------------------------------------
-----SS-SSS---------------------------------------------------------------------
-----------------S-----------------S---------S--SS---------S--------------------
-----------------------------------------------------------------S--------------
---S--------------------------------------------------S-------------------------
---------S-----------------------S----------------------------------------------
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----------S------S---------------------S----S-----------------------------------
------------S--------S---------------S----------------------------------S-------
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------------------------S-S-S---------------------------------------------------
--------------------------------------------------S-S--------------S------------
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-----------------------------------------------S----------S---------------------
---S-S--------------------------------------S----S-----S------------------------
-----------------------------------------------S-----SSS--------------------S---
-S---S----------------------------------------------------S------------------SSS
S--------------------------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
--S--S--S-S-----------------------S-----------------S---------SSS-SSSSSSSSSSS---
-------------------------------------S---------S---------S-------S------------SS
--SSS--S-S-S-SSS-SSSSSSSS--------------S----------------S-----------------------
----S---S----SSSSSS--S
>forward_143
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-------------------------------------------TGGGAGGTGCTTAGGGAAGT-----------------
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>reverse_2454
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-----------------------------------------------------CGGATTGGTATCATGGGAGCA------
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