Multiple sequence alignment - TraesCS4A01G190200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G190200 chr4A 100.000 2627 0 0 1 2627 468756496 468759122 0.000000e+00 4852.0
1 TraesCS4A01G190200 chr4A 89.127 699 58 15 1031 1724 469101937 469102622 0.000000e+00 854.0
2 TraesCS4A01G190200 chr4D 94.238 1805 84 10 409 2208 107435883 107434094 0.000000e+00 2739.0
3 TraesCS4A01G190200 chr4D 89.459 702 59 12 1034 1731 106739280 106738590 0.000000e+00 872.0
4 TraesCS4A01G190200 chr4D 87.805 410 37 9 2 405 107436342 107435940 3.960000e-128 468.0
5 TraesCS4A01G190200 chr4D 89.008 373 20 12 2262 2616 107434089 107433720 2.400000e-120 442.0
6 TraesCS4A01G190200 chr4B 93.255 1868 80 26 409 2246 169596956 169598807 0.000000e+00 2710.0
7 TraesCS4A01G190200 chr4B 94.618 576 30 1 1031 1606 169792532 169793106 0.000000e+00 891.0
8 TraesCS4A01G190200 chr4B 84.521 407 42 10 1 406 169596517 169596903 1.480000e-102 383.0
9 TraesCS4A01G190200 chr4B 96.396 111 4 0 2426 2536 169598871 169598981 1.610000e-42 183.0
10 TraesCS4A01G190200 chr5B 89.632 299 31 0 1228 1526 704276900 704276602 5.310000e-102 381.0
11 TraesCS4A01G190200 chr5B 79.012 324 45 13 1107 1429 704272904 704272603 1.590000e-47 200.0
12 TraesCS4A01G190200 chr2D 88.542 96 9 2 1682 1776 381201042 381200948 5.940000e-22 115.0
13 TraesCS4A01G190200 chr2D 95.082 61 3 0 1682 1742 381301387 381301447 2.150000e-16 97.1
14 TraesCS4A01G190200 chr2B 95.238 63 3 0 1682 1744 795271347 795271285 1.660000e-17 100.0
15 TraesCS4A01G190200 chr2A 93.651 63 4 0 1682 1744 762156486 762156548 7.740000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G190200 chr4A 468756496 468759122 2626 False 4852.000000 4852 100.000000 1 2627 1 chr4A.!!$F1 2626
1 TraesCS4A01G190200 chr4A 469101937 469102622 685 False 854.000000 854 89.127000 1031 1724 1 chr4A.!!$F2 693
2 TraesCS4A01G190200 chr4D 107433720 107436342 2622 True 1216.333333 2739 90.350333 2 2616 3 chr4D.!!$R2 2614
3 TraesCS4A01G190200 chr4D 106738590 106739280 690 True 872.000000 872 89.459000 1034 1731 1 chr4D.!!$R1 697
4 TraesCS4A01G190200 chr4B 169596517 169598981 2464 False 1092.000000 2710 91.390667 1 2536 3 chr4B.!!$F2 2535
5 TraesCS4A01G190200 chr4B 169792532 169793106 574 False 891.000000 891 94.618000 1031 1606 1 chr4B.!!$F1 575
6 TraesCS4A01G190200 chr5B 704272603 704276900 4297 True 290.500000 381 84.322000 1107 1526 2 chr5B.!!$R1 419

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 861 1.071471 CCCATCGCGCCCTCTTATT 59.929 57.895 0.0 0.0 0.0 1.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1860 1949 0.798776 CATCAGGCGTTGTTCACCTC 59.201 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.012673 CACTAACAGGCTGAATCTGCC 58.987 52.381 23.66 21.49 46.61 4.85
156 157 2.357952 TCCAGGTCATGTATTCGTCTCG 59.642 50.000 0.00 0.00 0.00 4.04
169 170 4.572985 TTCGTCTCGAACAGGAAAACTA 57.427 40.909 0.40 0.00 41.05 2.24
173 174 4.056050 GTCTCGAACAGGAAAACTAGCAA 58.944 43.478 0.00 0.00 0.00 3.91
174 176 4.510340 GTCTCGAACAGGAAAACTAGCAAA 59.490 41.667 0.00 0.00 0.00 3.68
185 187 1.751437 ACTAGCAAATTCCCGCTTCC 58.249 50.000 2.72 0.00 39.70 3.46
203 205 4.398673 GCTTCCAAGAGAGCAATCAAAGAT 59.601 41.667 0.00 0.00 0.00 2.40
204 206 5.105837 GCTTCCAAGAGAGCAATCAAAGATT 60.106 40.000 0.00 0.00 0.00 2.40
206 208 5.563592 TCCAAGAGAGCAATCAAAGATTCA 58.436 37.500 0.00 0.00 0.00 2.57
207 209 6.005823 TCCAAGAGAGCAATCAAAGATTCAA 58.994 36.000 0.00 0.00 0.00 2.69
208 210 6.072286 TCCAAGAGAGCAATCAAAGATTCAAC 60.072 38.462 0.00 0.00 0.00 3.18
210 212 5.568392 AGAGAGCAATCAAAGATTCAACCT 58.432 37.500 0.00 0.00 0.00 3.50
212 214 4.082354 AGAGCAATCAAAGATTCAACCTGC 60.082 41.667 0.00 0.00 0.00 4.85
214 216 3.924686 GCAATCAAAGATTCAACCTGCAG 59.075 43.478 6.78 6.78 0.00 4.41
220 222 6.913170 TCAAAGATTCAACCTGCAGAATAAC 58.087 36.000 17.39 0.32 34.79 1.89
225 227 6.888632 AGATTCAACCTGCAGAATAACAATCT 59.111 34.615 17.39 15.54 34.79 2.40
236 238 7.175467 TGCAGAATAACAATCTGAATTCTGTGT 59.825 33.333 21.20 5.03 45.74 3.72
255 257 5.577835 TGTGTAAGTTCAGCAAATCAACAC 58.422 37.500 0.00 0.00 36.21 3.32
264 266 7.178274 AGTTCAGCAAATCAACACCCATAATAA 59.822 33.333 0.00 0.00 0.00 1.40
267 269 6.753279 CAGCAAATCAACACCCATAATAACAG 59.247 38.462 0.00 0.00 0.00 3.16
373 376 2.283298 ACTTGATATGCACTTCCGCAG 58.717 47.619 0.00 0.00 46.99 5.18
405 408 7.687941 ATCCTACTGAACCAAAAACATACTG 57.312 36.000 0.00 0.00 0.00 2.74
406 409 6.833041 TCCTACTGAACCAAAAACATACTGA 58.167 36.000 0.00 0.00 0.00 3.41
407 410 7.284074 TCCTACTGAACCAAAAACATACTGAA 58.716 34.615 0.00 0.00 0.00 3.02
447 503 4.800471 GGAATACAAATAGCAAGCACAAGC 59.200 41.667 0.00 0.00 42.56 4.01
448 504 5.389859 AATACAAATAGCAAGCACAAGCA 57.610 34.783 0.00 0.00 45.49 3.91
664 721 2.830370 CCTTCCCGCAAGCCCATC 60.830 66.667 0.00 0.00 0.00 3.51
700 757 4.593864 GCGGCCGATGGGAGAGAC 62.594 72.222 33.48 2.06 34.06 3.36
804 861 1.071471 CCCATCGCGCCCTCTTATT 59.929 57.895 0.00 0.00 0.00 1.40
823 880 2.203098 ACGACAACAACCCACCCG 60.203 61.111 0.00 0.00 0.00 5.28
854 911 2.945668 CCATAGAAAGCCCAGTACTTGC 59.054 50.000 6.10 6.10 0.00 4.01
868 925 1.256812 ACTTGCAGGCCCACATAAAC 58.743 50.000 0.00 0.00 0.00 2.01
924 981 1.202533 CGGTCCCACATGTCATAGGAC 60.203 57.143 18.95 18.95 45.15 3.85
936 993 3.350909 ATAGGACGTGCTGCGCGAA 62.351 57.895 37.92 21.17 46.11 4.70
1028 1085 1.343142 CCACCAAAAACCCTAACCTGC 59.657 52.381 0.00 0.00 0.00 4.85
1157 1218 2.671619 GCCGTGGCCTACTGCAAA 60.672 61.111 3.32 0.00 43.89 3.68
1247 1308 2.501610 GCCTTCGAGCCGATCCTT 59.498 61.111 0.00 0.00 35.23 3.36
1617 1678 6.316890 ACCGCTAGTAGTTTGTTTTCTTTTGA 59.683 34.615 0.00 0.00 0.00 2.69
1814 1887 7.750229 TTTAGAATCTGTGAATGATATGGCC 57.250 36.000 0.00 0.00 0.00 5.36
1815 1888 4.321718 AGAATCTGTGAATGATATGGCCG 58.678 43.478 0.00 0.00 0.00 6.13
1907 2074 8.573885 TGTGATCGTACCGATTCTTAGAATATT 58.426 33.333 7.52 0.00 47.00 1.28
1973 2145 4.892934 TCCTTCAGCTGTTGGTAATTGTTT 59.107 37.500 14.67 0.00 0.00 2.83
1974 2146 5.362430 TCCTTCAGCTGTTGGTAATTGTTTT 59.638 36.000 14.67 0.00 0.00 2.43
2050 2222 0.949397 CCTGTGATGCCGATTCATGG 59.051 55.000 0.00 0.00 0.00 3.66
2061 2233 4.589216 CCGATTCATGGCCATGTTTATT 57.411 40.909 38.18 22.20 39.72 1.40
2174 2347 0.243365 TTATGCCGCTGCCAGTTTTG 59.757 50.000 0.00 0.00 36.33 2.44
2218 2391 0.251341 ACCCCAGTGGCATGTTCTTC 60.251 55.000 2.61 0.00 37.83 2.87
2219 2392 1.308069 CCCCAGTGGCATGTTCTTCG 61.308 60.000 2.61 0.00 0.00 3.79
2233 2406 8.023128 GGCATGTTCTTCGCATTATTTATGTAT 58.977 33.333 0.00 0.00 36.57 2.29
2237 2410 9.337396 TGTTCTTCGCATTATTTATGTATTCCT 57.663 29.630 0.00 0.00 36.57 3.36
2246 2419 1.694844 TATGTATTCCTGCCGTCCGA 58.305 50.000 0.00 0.00 0.00 4.55
2249 2422 1.208535 TGTATTCCTGCCGTCCGAAAT 59.791 47.619 0.00 0.00 0.00 2.17
2252 2425 2.702592 TTCCTGCCGTCCGAAATTAT 57.297 45.000 0.00 0.00 0.00 1.28
2257 2430 3.119637 CCTGCCGTCCGAAATTATTTGTT 60.120 43.478 0.00 0.00 0.00 2.83
2258 2431 3.827625 TGCCGTCCGAAATTATTTGTTG 58.172 40.909 0.00 0.00 0.00 3.33
2259 2432 2.596862 GCCGTCCGAAATTATTTGTTGC 59.403 45.455 0.00 0.00 0.00 4.17
2260 2433 2.843643 CCGTCCGAAATTATTTGTTGCG 59.156 45.455 0.00 0.00 0.00 4.85
2261 2434 2.843643 CGTCCGAAATTATTTGTTGCGG 59.156 45.455 8.61 8.61 38.68 5.69
2270 2443 6.907206 AATTATTTGTTGCGGAAATGGATG 57.093 33.333 0.00 0.00 0.00 3.51
2271 2444 3.959535 ATTTGTTGCGGAAATGGATGT 57.040 38.095 0.00 0.00 0.00 3.06
2280 2453 7.068103 TGTTGCGGAAATGGATGTATCTAAAAT 59.932 33.333 0.00 0.00 0.00 1.82
2328 2695 3.788227 ACATAACCAAACTCTCTGGCA 57.212 42.857 0.00 0.00 37.48 4.92
2329 2696 4.307032 ACATAACCAAACTCTCTGGCAT 57.693 40.909 0.00 0.00 37.48 4.40
2409 3907 9.612620 GTGGTCTTTGTATTTTCATTGACTTAG 57.387 33.333 0.00 0.00 0.00 2.18
2502 4229 2.790433 TGCGCTTCTTATTGGGAAGTT 58.210 42.857 9.73 0.00 41.36 2.66
2576 4755 3.004315 ACCTGCACAACTGTTATTTTCCG 59.996 43.478 0.00 0.00 0.00 4.30
2580 4759 4.279671 TGCACAACTGTTATTTTCCGGAAT 59.720 37.500 19.62 6.63 0.00 3.01
2581 4760 4.857037 GCACAACTGTTATTTTCCGGAATC 59.143 41.667 19.62 7.24 0.00 2.52
2582 4761 5.563867 GCACAACTGTTATTTTCCGGAATCA 60.564 40.000 19.62 8.50 0.00 2.57
2583 4762 5.856455 CACAACTGTTATTTTCCGGAATCAC 59.144 40.000 19.62 12.49 0.00 3.06
2584 4763 5.533154 ACAACTGTTATTTTCCGGAATCACA 59.467 36.000 19.62 16.17 0.00 3.58
2585 4764 6.039941 ACAACTGTTATTTTCCGGAATCACAA 59.960 34.615 19.62 9.79 0.00 3.33
2586 4765 6.254281 ACTGTTATTTTCCGGAATCACAAG 57.746 37.500 19.62 13.69 0.00 3.16
2593 4831 5.432885 TTTCCGGAATCACAAGAAGAAAC 57.567 39.130 19.62 0.00 0.00 2.78
2596 4834 4.285003 TCCGGAATCACAAGAAGAAACCTA 59.715 41.667 0.00 0.00 0.00 3.08
2597 4835 4.392138 CCGGAATCACAAGAAGAAACCTAC 59.608 45.833 0.00 0.00 0.00 3.18
2605 4843 8.974060 TCACAAGAAGAAACCTACTGTTATTT 57.026 30.769 0.00 0.00 35.67 1.40
2606 4844 9.052759 TCACAAGAAGAAACCTACTGTTATTTC 57.947 33.333 0.00 0.00 35.67 2.17
2607 4845 8.290325 CACAAGAAGAAACCTACTGTTATTTCC 58.710 37.037 7.21 0.00 35.67 3.13
2609 4847 7.086685 AGAAGAAACCTACTGTTATTTCCCA 57.913 36.000 7.21 0.00 35.67 4.37
2610 4848 7.168905 AGAAGAAACCTACTGTTATTTCCCAG 58.831 38.462 7.21 0.00 35.67 4.45
2611 4849 5.254115 AGAAACCTACTGTTATTTCCCAGC 58.746 41.667 7.21 0.00 35.67 4.85
2612 4850 4.650972 AACCTACTGTTATTTCCCAGCA 57.349 40.909 0.00 0.00 34.69 4.41
2613 4851 4.650972 ACCTACTGTTATTTCCCAGCAA 57.349 40.909 0.00 0.00 31.76 3.91
2614 4852 4.993028 ACCTACTGTTATTTCCCAGCAAA 58.007 39.130 0.00 0.00 31.76 3.68
2615 4853 5.580022 ACCTACTGTTATTTCCCAGCAAAT 58.420 37.500 0.00 0.00 31.76 2.32
2617 4855 7.179269 ACCTACTGTTATTTCCCAGCAAATTA 58.821 34.615 0.00 0.00 31.76 1.40
2618 4856 7.122204 ACCTACTGTTATTTCCCAGCAAATTAC 59.878 37.037 0.00 0.00 31.76 1.89
2619 4857 6.909550 ACTGTTATTTCCCAGCAAATTACA 57.090 33.333 0.00 0.00 34.50 2.41
2620 4858 7.296628 ACTGTTATTTCCCAGCAAATTACAA 57.703 32.000 2.16 0.00 35.78 2.41
2621 4859 7.731054 ACTGTTATTTCCCAGCAAATTACAAA 58.269 30.769 2.16 0.00 35.78 2.83
2623 4861 7.957002 TGTTATTTCCCAGCAAATTACAAAGA 58.043 30.769 0.00 0.00 34.15 2.52
2624 4862 8.424918 TGTTATTTCCCAGCAAATTACAAAGAA 58.575 29.630 0.00 0.00 34.15 2.52
2625 4863 8.925700 GTTATTTCCCAGCAAATTACAAAGAAG 58.074 33.333 0.00 0.00 29.54 2.85
2626 4864 6.723298 TTTCCCAGCAAATTACAAAGAAGA 57.277 33.333 0.00 0.00 0.00 2.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.833630 CAGCCTGTTAGTGGAGGATCA 59.166 52.381 0.00 0.00 36.25 2.92
52 53 7.475840 GCTGTAATCTTTCTCTTATTGGTTGG 58.524 38.462 0.00 0.00 0.00 3.77
61 62 1.661112 GCGCGCTGTAATCTTTCTCTT 59.339 47.619 26.67 0.00 0.00 2.85
122 123 5.127845 ACATGACCTGGAGACTGTTATAGTG 59.872 44.000 0.00 0.00 40.53 2.74
128 129 4.382040 CGAATACATGACCTGGAGACTGTT 60.382 45.833 0.00 0.00 0.00 3.16
156 157 5.470368 GGGAATTTGCTAGTTTTCCTGTTC 58.530 41.667 12.01 0.00 38.15 3.18
169 170 0.890683 CTTGGAAGCGGGAATTTGCT 59.109 50.000 0.00 0.00 44.97 3.91
173 174 1.680249 GCTCTCTTGGAAGCGGGAATT 60.680 52.381 0.00 0.00 0.00 2.17
174 176 0.107459 GCTCTCTTGGAAGCGGGAAT 60.107 55.000 0.00 0.00 0.00 3.01
185 187 6.072064 AGGTTGAATCTTTGATTGCTCTCTTG 60.072 38.462 0.00 0.00 0.00 3.02
203 205 6.003326 TCAGATTGTTATTCTGCAGGTTGAA 58.997 36.000 15.13 0.50 40.35 2.69
204 206 5.559770 TCAGATTGTTATTCTGCAGGTTGA 58.440 37.500 15.13 0.00 40.35 3.18
206 208 7.395489 AGAATTCAGATTGTTATTCTGCAGGTT 59.605 33.333 15.13 4.12 40.35 3.50
207 209 6.888632 AGAATTCAGATTGTTATTCTGCAGGT 59.111 34.615 15.13 5.80 40.35 4.00
208 210 7.194278 CAGAATTCAGATTGTTATTCTGCAGG 58.806 38.462 15.13 0.00 43.82 4.85
220 222 7.020010 GCTGAACTTACACAGAATTCAGATTG 58.980 38.462 14.72 0.00 45.96 2.67
225 227 6.691754 TTTGCTGAACTTACACAGAATTCA 57.308 33.333 8.44 0.00 36.38 2.57
236 238 4.211125 TGGGTGTTGATTTGCTGAACTTA 58.789 39.130 0.00 0.00 0.00 2.24
239 241 3.665745 ATGGGTGTTGATTTGCTGAAC 57.334 42.857 0.00 0.00 0.00 3.18
307 310 6.037098 CGGATTCGAGTTAAATCTCTTGTCT 58.963 40.000 0.96 0.00 39.00 3.41
345 348 6.183360 CGGAAGTGCATATCAAGTATGGTTTT 60.183 38.462 0.00 0.00 40.48 2.43
346 349 5.296780 CGGAAGTGCATATCAAGTATGGTTT 59.703 40.000 0.00 0.00 40.48 3.27
347 350 4.816385 CGGAAGTGCATATCAAGTATGGTT 59.184 41.667 0.00 0.00 40.48 3.67
349 352 3.187227 GCGGAAGTGCATATCAAGTATGG 59.813 47.826 0.00 0.00 40.48 2.74
350 353 3.809279 TGCGGAAGTGCATATCAAGTATG 59.191 43.478 0.00 0.00 40.62 2.39
351 354 4.060900 CTGCGGAAGTGCATATCAAGTAT 58.939 43.478 0.00 0.00 45.26 2.12
373 376 9.419297 GTTTTTGGTTCAGTAGGATATTTTTCC 57.581 33.333 0.00 0.00 35.90 3.13
405 408 5.695851 TTCCTGAGCAAATTGTTCTCTTC 57.304 39.130 10.96 0.00 0.00 2.87
406 409 6.716628 TGTATTCCTGAGCAAATTGTTCTCTT 59.283 34.615 10.96 0.00 0.00 2.85
407 410 6.240894 TGTATTCCTGAGCAAATTGTTCTCT 58.759 36.000 10.96 0.00 0.00 3.10
496 552 9.339492 CAATCTCATTACTTTCTTGCTTTCTTC 57.661 33.333 0.00 0.00 0.00 2.87
804 861 1.153127 GGGTGGGTTGTTGTCGTCA 60.153 57.895 0.00 0.00 0.00 4.35
823 880 3.559384 GGGCTTTCTATGGTATGGCCTAC 60.559 52.174 3.32 3.96 38.31 3.18
828 885 3.864789 ACTGGGCTTTCTATGGTATGG 57.135 47.619 0.00 0.00 0.00 2.74
829 886 5.552870 AGTACTGGGCTTTCTATGGTATG 57.447 43.478 0.00 0.00 0.00 2.39
830 887 5.687706 GCAAGTACTGGGCTTTCTATGGTAT 60.688 44.000 11.47 0.00 0.00 2.73
831 888 4.383770 GCAAGTACTGGGCTTTCTATGGTA 60.384 45.833 11.47 0.00 0.00 3.25
832 889 3.622455 GCAAGTACTGGGCTTTCTATGGT 60.622 47.826 11.47 0.00 0.00 3.55
854 911 2.214376 TTGGAGTTTATGTGGGCCTG 57.786 50.000 4.53 0.00 0.00 4.85
868 925 0.942962 GCCGAGCTGATCAATTGGAG 59.057 55.000 15.28 0.88 0.00 3.86
936 993 0.107848 CGTTAGGGTTTCGGCCTCAT 60.108 55.000 0.00 0.00 0.00 2.90
1013 1070 1.520600 CGGCGCAGGTTAGGGTTTTT 61.521 55.000 10.83 0.00 0.00 1.94
1346 1407 1.371595 AGTAGGCGACGAGAGACTTC 58.628 55.000 0.00 0.00 0.00 3.01
1812 1885 3.522553 ACTTGCTACTAGAAATGACGGC 58.477 45.455 0.00 0.00 0.00 5.68
1813 1886 7.166628 CAATACTTGCTACTAGAAATGACGG 57.833 40.000 0.00 0.00 0.00 4.79
1860 1949 0.798776 CATCAGGCGTTGTTCACCTC 59.201 55.000 0.00 0.00 0.00 3.85
1907 2074 7.399191 AGTGGAAGTACACATAGATAAGGAACA 59.601 37.037 0.00 0.00 43.72 3.18
2050 2222 3.163630 ACAATGGCGAATAAACATGGC 57.836 42.857 0.00 0.00 0.00 4.40
2218 2391 5.106712 ACGGCAGGAATACATAAATAATGCG 60.107 40.000 0.00 0.00 39.39 4.73
2219 2392 6.254281 ACGGCAGGAATACATAAATAATGC 57.746 37.500 0.00 0.00 39.39 3.56
2233 2406 2.702592 ATAATTTCGGACGGCAGGAA 57.297 45.000 0.00 0.00 0.00 3.36
2237 2410 3.827625 CAACAAATAATTTCGGACGGCA 58.172 40.909 0.00 0.00 0.00 5.69
2246 2419 6.878389 ACATCCATTTCCGCAACAAATAATTT 59.122 30.769 0.00 0.00 0.00 1.82
2249 2422 5.398603 ACATCCATTTCCGCAACAAATAA 57.601 34.783 0.00 0.00 0.00 1.40
2252 2425 4.704540 AGATACATCCATTTCCGCAACAAA 59.295 37.500 0.00 0.00 0.00 2.83
2257 2430 6.545666 ACATTTTAGATACATCCATTTCCGCA 59.454 34.615 0.00 0.00 0.00 5.69
2258 2431 6.970484 ACATTTTAGATACATCCATTTCCGC 58.030 36.000 0.00 0.00 0.00 5.54
2328 2695 8.782137 ACAAGGGCATAACTTCCATATAAAAT 57.218 30.769 0.00 0.00 0.00 1.82
2329 2696 8.602472 AACAAGGGCATAACTTCCATATAAAA 57.398 30.769 0.00 0.00 0.00 1.52
2409 3907 3.375782 AATTACGAGCCCACCGTATAC 57.624 47.619 0.00 0.00 41.36 1.47
2502 4229 2.812499 GCTCGGCCGGATAGAACA 59.188 61.111 27.83 1.15 0.00 3.18
2576 4755 5.998363 ACAGTAGGTTTCTTCTTGTGATTCC 59.002 40.000 0.00 0.00 0.00 3.01
2580 4759 8.974060 AAATAACAGTAGGTTTCTTCTTGTGA 57.026 30.769 0.00 0.00 40.96 3.58
2581 4760 8.290325 GGAAATAACAGTAGGTTTCTTCTTGTG 58.710 37.037 0.00 0.00 40.96 3.33
2582 4761 7.447545 GGGAAATAACAGTAGGTTTCTTCTTGT 59.552 37.037 0.00 0.00 40.96 3.16
2583 4762 7.447238 TGGGAAATAACAGTAGGTTTCTTCTTG 59.553 37.037 0.00 0.00 40.96 3.02
2584 4763 7.523415 TGGGAAATAACAGTAGGTTTCTTCTT 58.477 34.615 0.00 0.00 40.96 2.52
2585 4764 7.086685 TGGGAAATAACAGTAGGTTTCTTCT 57.913 36.000 0.00 0.00 40.96 2.85
2586 4765 6.127980 GCTGGGAAATAACAGTAGGTTTCTTC 60.128 42.308 0.00 0.00 40.96 2.87
2593 4831 6.530019 AATTTGCTGGGAAATAACAGTAGG 57.470 37.500 0.83 0.00 37.07 3.18
2596 4834 6.909550 TGTAATTTGCTGGGAAATAACAGT 57.090 33.333 0.83 0.00 37.07 3.55
2597 4835 8.087750 TCTTTGTAATTTGCTGGGAAATAACAG 58.912 33.333 0.83 0.00 37.76 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.