Multiple sequence alignment - TraesCS4A01G189400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G189400 chr4A 100.000 2459 0 0 1 2459 468215691 468213233 0.000000e+00 4542
1 TraesCS4A01G189400 chr4A 95.833 120 3 1 1533 1652 176868189 176868306 2.500000e-45 193
2 TraesCS4A01G189400 chr4D 92.036 1444 69 21 135 1547 108044181 108045609 0.000000e+00 1988
3 TraesCS4A01G189400 chr4D 90.783 217 20 0 1031 1247 108182889 108183105 8.600000e-75 291
4 TraesCS4A01G189400 chr4D 83.333 276 41 3 2163 2438 397155911 397156181 1.460000e-62 250
5 TraesCS4A01G189400 chr4D 98.361 122 2 0 1655 1776 108045612 108045733 5.330000e-52 215
6 TraesCS4A01G189400 chr4D 89.809 157 16 0 1798 1954 108213782 108213938 4.150000e-48 202
7 TraesCS4A01G189400 chr4D 88.158 152 15 3 1942 2092 108214928 108215077 6.990000e-41 178
8 TraesCS4A01G189400 chr4D 88.800 125 6 2 2031 2155 108045750 108045866 1.970000e-31 147
9 TraesCS4A01G189400 chr4D 93.333 90 6 0 50 139 108042145 108042234 1.530000e-27 134
10 TraesCS4A01G189400 chr4B 89.381 1535 101 26 50 1547 168579167 168577658 0.000000e+00 1875
11 TraesCS4A01G189400 chr4B 89.963 269 25 2 1798 2066 168192863 168192597 1.810000e-91 346
12 TraesCS4A01G189400 chr4B 95.283 212 10 0 1655 1866 168577655 168577444 1.090000e-88 337
13 TraesCS4A01G189400 chr4B 90.455 220 11 3 1936 2155 168577432 168577223 5.180000e-72 281
14 TraesCS4A01G189400 chr4B 82.174 230 41 0 2230 2459 15912367 15912596 5.360000e-47 198
15 TraesCS4A01G189400 chr7B 81.879 298 46 4 2165 2459 313768955 313769247 6.790000e-61 244
16 TraesCS4A01G189400 chr6A 81.757 296 47 4 2163 2458 508855115 508854827 8.790000e-60 241
17 TraesCS4A01G189400 chr6A 98.131 107 2 0 1545 1651 52322113 52322219 1.160000e-43 187
18 TraesCS4A01G189400 chr5D 81.419 296 49 4 2163 2458 537651712 537651423 1.140000e-58 237
19 TraesCS4A01G189400 chr7D 81.145 297 51 3 2163 2459 54442735 54443026 1.470000e-57 233
20 TraesCS4A01G189400 chr7D 80.537 298 50 6 2163 2459 264773173 264773463 3.180000e-54 222
21 TraesCS4A01G189400 chr7D 79.730 296 54 4 2163 2458 159897748 159897459 2.480000e-50 209
22 TraesCS4A01G189400 chr2D 80.634 284 50 3 2169 2452 53759321 53759043 5.330000e-52 215
23 TraesCS4A01G189400 chr5B 99.091 110 1 0 1543 1652 598082856 598082965 5.360000e-47 198
24 TraesCS4A01G189400 chr5B 98.230 113 1 1 1541 1653 380324245 380324356 1.930000e-46 196
25 TraesCS4A01G189400 chr6B 99.083 109 1 0 1543 1651 447114664 447114556 1.930000e-46 196
26 TraesCS4A01G189400 chr3A 98.214 112 1 1 1541 1652 32195744 32195634 6.940000e-46 195
27 TraesCS4A01G189400 chr3B 98.131 107 2 0 1545 1651 86092798 86092692 1.160000e-43 187
28 TraesCS4A01G189400 chr3B 94.118 119 6 1 1541 1658 577429316 577429198 1.940000e-41 180
29 TraesCS4A01G189400 chr1B 94.783 115 6 0 1541 1655 491705799 491705685 1.940000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G189400 chr4A 468213233 468215691 2458 True 4542 4542 100.000000 1 2459 1 chr4A.!!$R1 2458
1 TraesCS4A01G189400 chr4D 108042145 108045866 3721 False 621 1988 93.132500 50 2155 4 chr4D.!!$F3 2105
2 TraesCS4A01G189400 chr4B 168577223 168579167 1944 True 831 1875 91.706333 50 2155 3 chr4B.!!$R2 2105

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
25 26 0.027194 TAGATTCCGACGTTCGCTCG 59.973 55.0 0.0 9.04 38.82 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1895 3889 0.038618 ACTTCAGCACACGCGTATGA 60.039 50.0 23.78 15.85 45.49 2.15 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.735181 GCAACCTAGATTCCGACGT 57.265 52.632 0.00 0.00 0.00 4.34
19 20 2.005971 GCAACCTAGATTCCGACGTT 57.994 50.000 0.00 0.00 0.00 3.99
20 21 1.925185 GCAACCTAGATTCCGACGTTC 59.075 52.381 0.00 0.00 0.00 3.95
21 22 2.182825 CAACCTAGATTCCGACGTTCG 58.817 52.381 0.00 0.00 40.07 3.95
22 23 0.100146 ACCTAGATTCCGACGTTCGC 59.900 55.000 0.00 0.00 38.82 4.70
23 24 0.381089 CCTAGATTCCGACGTTCGCT 59.619 55.000 0.00 0.00 38.82 4.93
24 25 1.597445 CCTAGATTCCGACGTTCGCTC 60.597 57.143 0.00 0.00 38.82 5.03
25 26 0.027194 TAGATTCCGACGTTCGCTCG 59.973 55.000 0.00 9.04 38.82 5.03
31 32 3.818787 GACGTTCGCTCGGGCCTA 61.819 66.667 0.00 0.00 34.44 3.93
32 33 3.135056 GACGTTCGCTCGGGCCTAT 62.135 63.158 0.00 0.00 34.44 2.57
33 34 2.354773 CGTTCGCTCGGGCCTATC 60.355 66.667 0.00 0.00 34.44 2.08
34 35 2.354773 GTTCGCTCGGGCCTATCG 60.355 66.667 0.00 0.00 34.44 2.92
35 36 2.517638 TTCGCTCGGGCCTATCGA 60.518 61.111 0.00 0.00 34.44 3.59
40 41 2.516405 TCGGGCCTATCGAGAGCT 59.484 61.111 0.84 0.00 32.51 4.09
41 42 1.601197 TCGGGCCTATCGAGAGCTC 60.601 63.158 5.27 5.27 32.51 4.09
109 110 3.606687 ACGGGATCGCTTTACAAAGAAT 58.393 40.909 8.28 0.00 40.63 2.40
141 2093 4.002906 ACATACCACGTGTGATTTGAGT 57.997 40.909 15.65 4.94 0.00 3.41
204 2156 1.195448 CTGTGGCAAGTTGCTCGTAAG 59.805 52.381 26.16 13.33 44.28 2.34
205 2157 1.226746 GTGGCAAGTTGCTCGTAAGT 58.773 50.000 26.16 0.00 44.28 2.24
206 2158 1.194772 GTGGCAAGTTGCTCGTAAGTC 59.805 52.381 26.16 8.50 44.28 3.01
207 2159 0.438830 GGCAAGTTGCTCGTAAGTCG 59.561 55.000 26.16 0.00 44.28 4.18
208 2160 1.137513 GCAAGTTGCTCGTAAGTCGT 58.862 50.000 20.71 0.00 40.96 4.34
209 2161 2.322161 GCAAGTTGCTCGTAAGTCGTA 58.678 47.619 20.71 0.00 40.96 3.43
210 2162 2.727798 GCAAGTTGCTCGTAAGTCGTAA 59.272 45.455 20.71 0.00 40.96 3.18
211 2163 3.421440 GCAAGTTGCTCGTAAGTCGTAAC 60.421 47.826 20.71 0.00 40.96 2.50
212 2164 3.911661 AGTTGCTCGTAAGTCGTAACT 57.088 42.857 0.00 0.00 40.80 2.24
213 2165 3.562505 AGTTGCTCGTAAGTCGTAACTG 58.437 45.455 0.00 0.00 37.62 3.16
248 2200 1.490490 ACCAAGTTCAGAAGAGGCACA 59.510 47.619 0.00 0.00 0.00 4.57
269 2221 2.669133 CCAGGGGACAGGAATCGCA 61.669 63.158 0.00 0.00 39.95 5.10
317 2270 4.685628 GCCACCATTTATTGTTCAAGTGTG 59.314 41.667 0.00 0.00 0.00 3.82
358 2311 0.743345 GCGCCCTCCGTGAAATAACT 60.743 55.000 0.00 0.00 39.71 2.24
367 2320 1.393539 CGTGAAATAACTGGAGGTGCG 59.606 52.381 0.00 0.00 0.00 5.34
451 2408 1.912763 GCATGGCTGGTTTTGGGGA 60.913 57.895 0.00 0.00 0.00 4.81
464 2421 4.041762 GGGGACATTGGCGTGGGA 62.042 66.667 0.00 0.00 0.00 4.37
507 2464 2.067013 GCGCGTATAGAGGGGATTTTC 58.933 52.381 8.43 0.00 0.00 2.29
529 2486 3.726557 TTCACCATCCAGCTGATCTTT 57.273 42.857 17.39 0.00 0.00 2.52
543 2500 8.253113 CCAGCTGATCTTTTATACAAAATGGTT 58.747 33.333 17.39 0.00 33.27 3.67
582 2539 3.446873 TGAAGCTTCTGGCAAAGTCAAAA 59.553 39.130 26.09 0.00 44.79 2.44
629 2586 2.014128 GCTAAAGATGCGGGCAAAGTA 58.986 47.619 0.00 0.00 0.00 2.24
642 2599 3.003378 GGGCAAAGTACACTGAACTTCAC 59.997 47.826 0.00 0.00 36.17 3.18
649 2606 0.874175 CACTGAACTTCACCGCGTCA 60.874 55.000 4.92 0.00 0.00 4.35
650 2607 0.033504 ACTGAACTTCACCGCGTCAT 59.966 50.000 4.92 0.00 0.00 3.06
674 2631 1.614850 GGAATTTGCTTCCGTGGGGTA 60.615 52.381 0.00 0.00 44.02 3.69
696 2653 5.011982 ACCATCCTTCCCGATATCTTCTA 57.988 43.478 0.34 0.00 0.00 2.10
698 2655 5.222358 ACCATCCTTCCCGATATCTTCTAGA 60.222 44.000 0.34 0.00 0.00 2.43
706 2663 4.143073 CCCGATATCTTCTAGAAGTCGTCG 60.143 50.000 28.10 28.30 39.38 5.12
708 2665 5.388682 CCGATATCTTCTAGAAGTCGTCGAC 60.389 48.000 32.43 17.70 37.92 4.20
709 2666 5.388682 CGATATCTTCTAGAAGTCGTCGACC 60.389 48.000 29.94 7.61 37.92 4.79
731 2706 1.399440 CGCTGCATTGCTGTTATCAGT 59.601 47.619 15.71 0.00 43.05 3.41
749 2726 2.345641 CAGTCGTTTCGGCTTGTATCTG 59.654 50.000 0.00 0.00 39.37 2.90
750 2727 2.029290 AGTCGTTTCGGCTTGTATCTGT 60.029 45.455 0.00 0.00 39.37 3.41
754 2731 3.924686 CGTTTCGGCTTGTATCTGTACTT 59.075 43.478 0.00 0.00 0.00 2.24
791 2768 8.519799 TCTGTTTCCATTTTGTTAGACTCTTT 57.480 30.769 0.00 0.00 0.00 2.52
805 2782 8.408601 TGTTAGACTCTTTTACGACTTTGTAGT 58.591 33.333 0.00 0.00 37.31 2.73
810 2787 5.362263 TCTTTTACGACTTTGTAGTGCCTT 58.638 37.500 0.00 0.00 33.84 4.35
833 2810 2.843912 ATTAAGGCCAGGCAAGCGCT 62.844 55.000 15.19 2.64 38.60 5.92
1008 2990 4.740822 GCCGGTCCAATGGCCACT 62.741 66.667 8.16 0.00 45.73 4.00
1019 3001 0.617413 ATGGCCACTGACTCTTCCTG 59.383 55.000 8.16 0.00 0.00 3.86
1136 3130 1.141019 CCCTCGTCATGTACACCGG 59.859 63.158 0.00 0.00 0.00 5.28
1257 3251 2.579684 AAGGCTCCGGCGATGAGTTC 62.580 60.000 9.30 4.66 39.81 3.01
1431 3425 4.435436 ATCGCTTGTCGGCTCGCA 62.435 61.111 2.37 0.00 39.05 5.10
1465 3459 4.740822 GCGGGCCATGAACTGGGT 62.741 66.667 4.39 0.00 46.06 4.51
1512 3506 6.152661 CCAGATCAAGTAGGTTTTTGCCATAA 59.847 38.462 0.00 0.00 0.00 1.90
1547 3541 8.812972 TGTTGGTTGAATCAACTCTATACTACT 58.187 33.333 23.30 0.00 43.14 2.57
1548 3542 9.303537 GTTGGTTGAATCAACTCTATACTACTC 57.696 37.037 23.30 5.13 43.14 2.59
1549 3543 8.589701 TGGTTGAATCAACTCTATACTACTCA 57.410 34.615 23.30 7.47 43.14 3.41
1550 3544 8.467598 TGGTTGAATCAACTCTATACTACTCAC 58.532 37.037 23.30 4.56 43.14 3.51
1551 3545 8.688151 GGTTGAATCAACTCTATACTACTCACT 58.312 37.037 23.30 0.00 43.14 3.41
1552 3546 9.724839 GTTGAATCAACTCTATACTACTCACTC 57.275 37.037 18.03 0.00 40.73 3.51
1553 3547 9.688091 TTGAATCAACTCTATACTACTCACTCT 57.312 33.333 0.00 0.00 0.00 3.24
1554 3548 9.114952 TGAATCAACTCTATACTACTCACTCTG 57.885 37.037 0.00 0.00 0.00 3.35
1555 3549 9.116067 GAATCAACTCTATACTACTCACTCTGT 57.884 37.037 0.00 0.00 0.00 3.41
1556 3550 9.469097 AATCAACTCTATACTACTCACTCTGTT 57.531 33.333 0.00 0.00 0.00 3.16
1557 3551 8.495361 TCAACTCTATACTACTCACTCTGTTC 57.505 38.462 0.00 0.00 0.00 3.18
1558 3552 7.553402 TCAACTCTATACTACTCACTCTGTTCC 59.447 40.741 0.00 0.00 0.00 3.62
1559 3553 6.050432 ACTCTATACTACTCACTCTGTTCCG 58.950 44.000 0.00 0.00 0.00 4.30
1560 3554 6.127111 ACTCTATACTACTCACTCTGTTCCGA 60.127 42.308 0.00 0.00 0.00 4.55
1561 3555 6.647229 TCTATACTACTCACTCTGTTCCGAA 58.353 40.000 0.00 0.00 0.00 4.30
1562 3556 7.281098 TCTATACTACTCACTCTGTTCCGAAT 58.719 38.462 0.00 0.00 0.00 3.34
1563 3557 6.777213 ATACTACTCACTCTGTTCCGAATT 57.223 37.500 0.00 0.00 0.00 2.17
1564 3558 7.876936 ATACTACTCACTCTGTTCCGAATTA 57.123 36.000 0.00 0.00 0.00 1.40
1565 3559 5.952033 ACTACTCACTCTGTTCCGAATTAC 58.048 41.667 0.00 0.00 0.00 1.89
1566 3560 5.711036 ACTACTCACTCTGTTCCGAATTACT 59.289 40.000 0.00 0.00 0.00 2.24
1567 3561 5.470047 ACTCACTCTGTTCCGAATTACTT 57.530 39.130 0.00 0.00 0.00 2.24
1568 3562 5.230942 ACTCACTCTGTTCCGAATTACTTG 58.769 41.667 0.00 0.00 0.00 3.16
1569 3563 5.209818 TCACTCTGTTCCGAATTACTTGT 57.790 39.130 0.00 0.00 0.00 3.16
1570 3564 5.227908 TCACTCTGTTCCGAATTACTTGTC 58.772 41.667 0.00 0.00 0.00 3.18
1571 3565 5.010719 TCACTCTGTTCCGAATTACTTGTCT 59.989 40.000 0.00 0.00 0.00 3.41
1572 3566 5.346281 CACTCTGTTCCGAATTACTTGTCTC 59.654 44.000 0.00 0.00 0.00 3.36
1573 3567 4.482386 TCTGTTCCGAATTACTTGTCTCG 58.518 43.478 0.00 0.00 0.00 4.04
1581 3575 5.769367 CGAATTACTTGTCTCGGATATGGA 58.231 41.667 0.00 0.00 0.00 3.41
1582 3576 6.390721 CGAATTACTTGTCTCGGATATGGAT 58.609 40.000 0.00 0.00 0.00 3.41
1583 3577 6.309009 CGAATTACTTGTCTCGGATATGGATG 59.691 42.308 0.00 0.00 0.00 3.51
1584 3578 6.672266 ATTACTTGTCTCGGATATGGATGT 57.328 37.500 0.00 0.00 0.00 3.06
1585 3579 7.776618 ATTACTTGTCTCGGATATGGATGTA 57.223 36.000 0.00 0.00 0.00 2.29
1586 3580 7.776618 TTACTTGTCTCGGATATGGATGTAT 57.223 36.000 0.00 0.00 0.00 2.29
1587 3581 6.274157 ACTTGTCTCGGATATGGATGTATC 57.726 41.667 0.00 0.00 0.00 2.24
1588 3582 6.013379 ACTTGTCTCGGATATGGATGTATCT 58.987 40.000 0.00 0.00 32.78 1.98
1589 3583 7.175797 ACTTGTCTCGGATATGGATGTATCTA 58.824 38.462 0.00 0.00 32.78 1.98
1590 3584 7.338196 ACTTGTCTCGGATATGGATGTATCTAG 59.662 40.741 0.00 0.00 32.78 2.43
1591 3585 6.958767 TGTCTCGGATATGGATGTATCTAGA 58.041 40.000 0.00 0.00 32.78 2.43
1592 3586 7.402862 TGTCTCGGATATGGATGTATCTAGAA 58.597 38.462 0.00 0.00 31.35 2.10
1593 3587 7.337184 TGTCTCGGATATGGATGTATCTAGAAC 59.663 40.741 0.00 0.00 31.35 3.01
1594 3588 7.554835 GTCTCGGATATGGATGTATCTAGAACT 59.445 40.741 0.00 0.00 31.35 3.01
1595 3589 8.769359 TCTCGGATATGGATGTATCTAGAACTA 58.231 37.037 0.00 0.00 32.78 2.24
1596 3590 9.397280 CTCGGATATGGATGTATCTAGAACTAA 57.603 37.037 0.00 0.00 32.78 2.24
1597 3591 9.175312 TCGGATATGGATGTATCTAGAACTAAC 57.825 37.037 0.00 0.00 32.78 2.34
1598 3592 8.957466 CGGATATGGATGTATCTAGAACTAACA 58.043 37.037 0.00 0.00 32.78 2.41
1625 3619 8.637196 ACATCTAGATACATCCATTTCTACGA 57.363 34.615 4.54 0.00 0.00 3.43
1626 3620 8.516234 ACATCTAGATACATCCATTTCTACGAC 58.484 37.037 4.54 0.00 0.00 4.34
1627 3621 8.515414 CATCTAGATACATCCATTTCTACGACA 58.485 37.037 4.54 0.00 0.00 4.35
1628 3622 8.459911 TCTAGATACATCCATTTCTACGACAA 57.540 34.615 0.00 0.00 0.00 3.18
1629 3623 8.568794 TCTAGATACATCCATTTCTACGACAAG 58.431 37.037 0.00 0.00 0.00 3.16
1630 3624 7.113658 AGATACATCCATTTCTACGACAAGT 57.886 36.000 0.00 0.00 0.00 3.16
1631 3625 8.234136 AGATACATCCATTTCTACGACAAGTA 57.766 34.615 0.00 0.00 0.00 2.24
1632 3626 8.692710 AGATACATCCATTTCTACGACAAGTAA 58.307 33.333 0.00 0.00 34.45 2.24
1633 3627 9.477484 GATACATCCATTTCTACGACAAGTAAT 57.523 33.333 0.00 0.00 34.45 1.89
1634 3628 9.832445 ATACATCCATTTCTACGACAAGTAATT 57.168 29.630 0.00 0.00 34.45 1.40
1635 3629 8.197988 ACATCCATTTCTACGACAAGTAATTC 57.802 34.615 0.00 0.00 34.45 2.17
1636 3630 7.280205 ACATCCATTTCTACGACAAGTAATTCC 59.720 37.037 0.00 0.00 34.45 3.01
1637 3631 5.808540 TCCATTTCTACGACAAGTAATTCCG 59.191 40.000 0.00 0.00 34.45 4.30
1638 3632 5.808540 CCATTTCTACGACAAGTAATTCCGA 59.191 40.000 0.00 0.00 34.45 4.55
1639 3633 6.311935 CCATTTCTACGACAAGTAATTCCGAA 59.688 38.462 0.00 0.00 34.45 4.30
1640 3634 6.695292 TTTCTACGACAAGTAATTCCGAAC 57.305 37.500 0.00 0.00 34.45 3.95
1641 3635 4.406069 TCTACGACAAGTAATTCCGAACG 58.594 43.478 0.00 0.00 34.45 3.95
1642 3636 2.331194 ACGACAAGTAATTCCGAACGG 58.669 47.619 6.94 6.94 0.00 4.44
1643 3637 2.030007 ACGACAAGTAATTCCGAACGGA 60.030 45.455 12.04 12.04 43.52 4.69
1644 3638 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
1645 3639 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1646 3640 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1647 3641 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1648 3642 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1649 3643 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1650 3644 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1651 3645 1.400737 ATTCCGAACGGAGGGAGTAG 58.599 55.000 15.34 0.00 46.06 2.57
1652 3646 0.038744 TTCCGAACGGAGGGAGTAGT 59.961 55.000 15.34 0.00 46.06 2.73
1653 3647 0.911769 TCCGAACGGAGGGAGTAGTA 59.088 55.000 12.04 0.00 39.76 1.82
1757 3751 2.366590 TGCAGACTATGATGCCCAGTAG 59.633 50.000 0.00 0.00 41.85 2.57
1777 3771 8.150296 CCAGTAGGGAATTTCTTTTGAATTTGT 58.850 33.333 0.00 0.00 40.01 2.83
1787 3781 5.852827 TCTTTTGAATTTGTGTGGAATCCC 58.147 37.500 0.00 0.00 0.00 3.85
1796 3790 2.180204 GTGGAATCCCATCGTGCGG 61.180 63.158 0.00 0.00 45.68 5.69
1830 3824 4.183865 TCACGGAGCAGAGACATATTTTG 58.816 43.478 0.00 0.00 0.00 2.44
1852 3846 0.947660 CTCACGCACATCACAGCAGT 60.948 55.000 0.00 0.00 0.00 4.40
1861 3855 0.466007 ATCACAGCAGTGCAACACCA 60.466 50.000 19.20 0.00 45.49 4.17
1866 3860 1.111116 AGCAGTGCAACACCATGCTT 61.111 50.000 19.20 0.00 41.04 3.91
1867 3861 0.942410 GCAGTGCAACACCATGCTTG 60.942 55.000 11.09 0.00 46.54 4.01
1868 3862 0.386476 CAGTGCAACACCATGCTTGT 59.614 50.000 0.00 0.00 46.54 3.16
1869 3863 1.113788 AGTGCAACACCATGCTTGTT 58.886 45.000 5.36 5.36 46.54 2.83
1870 3864 2.034432 CAGTGCAACACCATGCTTGTTA 59.966 45.455 9.81 0.00 46.54 2.41
1873 3867 4.522405 AGTGCAACACCATGCTTGTTATTA 59.478 37.500 9.81 0.00 46.54 0.98
1874 3868 4.621034 GTGCAACACCATGCTTGTTATTAC 59.379 41.667 9.81 6.78 46.54 1.89
1875 3869 4.279420 TGCAACACCATGCTTGTTATTACA 59.721 37.500 9.81 5.20 46.54 2.41
1876 3870 4.858692 GCAACACCATGCTTGTTATTACAG 59.141 41.667 9.81 0.69 43.06 2.74
1877 3871 5.335583 GCAACACCATGCTTGTTATTACAGA 60.336 40.000 9.81 0.00 43.06 3.41
1878 3872 6.676950 CAACACCATGCTTGTTATTACAGAA 58.323 36.000 9.81 0.00 35.38 3.02
1879 3873 6.892658 ACACCATGCTTGTTATTACAGAAA 57.107 33.333 0.00 0.00 35.28 2.52
1880 3874 7.283625 ACACCATGCTTGTTATTACAGAAAA 57.716 32.000 0.00 0.00 35.28 2.29
1881 3875 7.721402 ACACCATGCTTGTTATTACAGAAAAA 58.279 30.769 0.00 0.00 35.28 1.94
1902 3896 6.704512 AAAATGACCAAACAAATCATACGC 57.295 33.333 0.00 0.00 32.74 4.42
1903 3897 3.463533 TGACCAAACAAATCATACGCG 57.536 42.857 3.53 3.53 0.00 6.01
1904 3898 2.809119 TGACCAAACAAATCATACGCGT 59.191 40.909 19.17 19.17 0.00 6.01
1905 3899 3.160545 GACCAAACAAATCATACGCGTG 58.839 45.455 24.59 6.12 0.00 5.34
1906 3900 2.550606 ACCAAACAAATCATACGCGTGT 59.449 40.909 24.59 13.76 0.00 4.49
1907 3901 2.908009 CCAAACAAATCATACGCGTGTG 59.092 45.455 27.64 27.64 0.00 3.82
1908 3902 2.241259 AACAAATCATACGCGTGTGC 57.759 45.000 28.53 0.00 37.91 4.57
1909 3903 1.438651 ACAAATCATACGCGTGTGCT 58.561 45.000 28.53 18.38 39.65 4.40
1910 3904 1.128507 ACAAATCATACGCGTGTGCTG 59.871 47.619 28.53 24.51 39.65 4.41
1911 3905 1.393196 CAAATCATACGCGTGTGCTGA 59.607 47.619 28.53 20.94 39.65 4.26
1912 3906 1.720805 AATCATACGCGTGTGCTGAA 58.279 45.000 28.53 13.76 39.65 3.02
1913 3907 1.280982 ATCATACGCGTGTGCTGAAG 58.719 50.000 28.53 6.76 39.65 3.02
1914 3908 0.038618 TCATACGCGTGTGCTGAAGT 60.039 50.000 28.53 0.00 39.65 3.01
1915 3909 1.200484 TCATACGCGTGTGCTGAAGTA 59.800 47.619 28.53 9.02 39.65 2.24
1916 3910 1.583856 CATACGCGTGTGCTGAAGTAG 59.416 52.381 22.99 0.00 39.65 2.57
1917 3911 0.594602 TACGCGTGTGCTGAAGTAGT 59.405 50.000 24.59 0.00 39.65 2.73
1918 3912 0.249322 ACGCGTGTGCTGAAGTAGTT 60.249 50.000 12.93 0.00 39.65 2.24
1919 3913 0.859232 CGCGTGTGCTGAAGTAGTTT 59.141 50.000 0.00 0.00 39.65 2.66
1920 3914 1.397190 CGCGTGTGCTGAAGTAGTTTG 60.397 52.381 0.00 0.00 39.65 2.93
1921 3915 1.597663 GCGTGTGCTGAAGTAGTTTGT 59.402 47.619 0.00 0.00 38.39 2.83
1922 3916 2.599848 GCGTGTGCTGAAGTAGTTTGTG 60.600 50.000 0.00 0.00 38.39 3.33
1923 3917 2.599848 CGTGTGCTGAAGTAGTTTGTGC 60.600 50.000 0.00 0.00 0.00 4.57
1924 3918 1.946768 TGTGCTGAAGTAGTTTGTGCC 59.053 47.619 0.00 0.00 0.00 5.01
1925 3919 1.946768 GTGCTGAAGTAGTTTGTGCCA 59.053 47.619 0.00 0.00 0.00 4.92
1926 3920 2.357637 GTGCTGAAGTAGTTTGTGCCAA 59.642 45.455 0.00 0.00 0.00 4.52
1927 3921 3.004734 GTGCTGAAGTAGTTTGTGCCAAT 59.995 43.478 0.00 0.00 0.00 3.16
1928 3922 3.636300 TGCTGAAGTAGTTTGTGCCAATT 59.364 39.130 0.00 0.00 0.00 2.32
1929 3923 4.099266 TGCTGAAGTAGTTTGTGCCAATTT 59.901 37.500 0.00 0.00 0.00 1.82
1930 3924 4.445385 GCTGAAGTAGTTTGTGCCAATTTG 59.555 41.667 0.00 0.00 0.00 2.32
1931 3925 5.590530 TGAAGTAGTTTGTGCCAATTTGT 57.409 34.783 0.00 0.00 0.00 2.83
1932 3926 5.971763 TGAAGTAGTTTGTGCCAATTTGTT 58.028 33.333 0.00 0.00 0.00 2.83
1933 3927 6.039616 TGAAGTAGTTTGTGCCAATTTGTTC 58.960 36.000 0.00 0.00 0.00 3.18
1934 3928 4.944048 AGTAGTTTGTGCCAATTTGTTCC 58.056 39.130 0.00 0.00 0.00 3.62
1960 3954 3.423539 TGCTGGTAGAAGTGCTGAATT 57.576 42.857 0.00 0.00 0.00 2.17
1998 3992 1.401905 GGGCTATTTTCCAGCTGAACG 59.598 52.381 17.39 0.00 39.09 3.95
2011 4005 2.046313 GCTGAACGTTGCAATCTTGTG 58.954 47.619 5.00 0.00 0.00 3.33
2019 4013 1.795768 TGCAATCTTGTGTCCTCGTC 58.204 50.000 0.00 0.00 0.00 4.20
2028 4022 0.892755 GTGTCCTCGTCCATGTACCA 59.107 55.000 0.00 0.00 0.00 3.25
2029 4023 1.480954 GTGTCCTCGTCCATGTACCAT 59.519 52.381 0.00 0.00 0.00 3.55
2038 4032 3.119814 CGTCCATGTACCATATCTCTCCG 60.120 52.174 0.00 0.00 0.00 4.63
2071 4065 4.298332 AGCAATCTTTACCTGCAAAAACG 58.702 39.130 0.00 0.00 38.58 3.60
2078 4072 1.247567 ACCTGCAAAAACGAGATGGG 58.752 50.000 0.00 0.00 0.00 4.00
2100 4094 1.732259 CTGAAACACACATAGGGCGTC 59.268 52.381 0.00 0.00 0.00 5.19
2101 4095 1.070914 TGAAACACACATAGGGCGTCA 59.929 47.619 0.00 0.00 0.00 4.35
2102 4096 1.732259 GAAACACACATAGGGCGTCAG 59.268 52.381 0.00 0.00 0.00 3.51
2103 4097 0.036388 AACACACATAGGGCGTCAGG 60.036 55.000 0.00 0.00 0.00 3.86
2104 4098 1.153369 CACACATAGGGCGTCAGGG 60.153 63.158 0.00 0.00 0.00 4.45
2105 4099 2.203070 CACATAGGGCGTCAGGGC 60.203 66.667 0.00 0.00 41.35 5.19
2106 4100 3.849951 ACATAGGGCGTCAGGGCG 61.850 66.667 0.00 0.00 43.46 6.13
2107 4101 3.849951 CATAGGGCGTCAGGGCGT 61.850 66.667 0.00 0.00 43.46 5.68
2135 4129 2.413837 CCCTTAACAGACTCACGTTGG 58.586 52.381 0.00 0.00 0.00 3.77
2150 4144 3.881089 CACGTTGGGAATATTAGGAACCC 59.119 47.826 2.77 2.77 40.79 4.11
2155 4149 2.289257 GGGAATATTAGGAACCCGTCGG 60.289 54.545 3.60 3.60 0.00 4.79
2156 4150 2.410939 GAATATTAGGAACCCGTCGGC 58.589 52.381 5.50 0.00 0.00 5.54
2157 4151 0.683412 ATATTAGGAACCCGTCGGCC 59.317 55.000 5.50 1.47 0.00 6.13
2158 4152 0.397535 TATTAGGAACCCGTCGGCCT 60.398 55.000 5.50 9.98 34.56 5.19
2159 4153 1.968050 ATTAGGAACCCGTCGGCCTG 61.968 60.000 16.66 2.16 32.04 4.85
2162 4156 4.754667 GAACCCGTCGGCCTGGAC 62.755 72.222 5.50 0.02 0.00 4.02
2185 4179 3.006728 GGTGGATCCGGTGGTGGA 61.007 66.667 7.39 0.00 43.58 4.02
2186 4180 2.267961 GTGGATCCGGTGGTGGAC 59.732 66.667 7.39 0.00 41.85 4.02
2187 4181 3.006728 TGGATCCGGTGGTGGACC 61.007 66.667 7.39 0.00 41.85 4.46
2188 4182 3.793888 GGATCCGGTGGTGGACCC 61.794 72.222 0.00 0.00 42.62 4.46
2189 4183 3.793888 GATCCGGTGGTGGACCCC 61.794 72.222 0.00 0.00 42.62 4.95
2190 4184 4.348495 ATCCGGTGGTGGACCCCT 62.348 66.667 0.00 0.00 42.62 4.79
2194 4188 3.703127 GGTGGTGGACCCCTCGTC 61.703 72.222 0.00 0.00 39.10 4.20
2195 4189 2.920912 GTGGTGGACCCCTCGTCA 60.921 66.667 0.00 0.00 43.95 4.35
2196 4190 2.603473 TGGTGGACCCCTCGTCAG 60.603 66.667 0.00 0.00 43.95 3.51
2197 4191 4.083862 GGTGGACCCCTCGTCAGC 62.084 72.222 0.00 0.00 43.95 4.26
2198 4192 4.436998 GTGGACCCCTCGTCAGCG 62.437 72.222 0.00 0.00 43.95 5.18
2217 4211 4.070552 GGCGAGGAGGTTCTGCGT 62.071 66.667 0.00 0.00 0.00 5.24
2218 4212 2.811317 GCGAGGAGGTTCTGCGTG 60.811 66.667 0.00 0.00 0.00 5.34
2219 4213 2.125912 CGAGGAGGTTCTGCGTGG 60.126 66.667 0.00 0.00 0.00 4.94
2220 4214 2.435059 GAGGAGGTTCTGCGTGGC 60.435 66.667 0.00 0.00 0.00 5.01
2221 4215 2.925170 AGGAGGTTCTGCGTGGCT 60.925 61.111 0.00 0.00 0.00 4.75
2222 4216 2.743928 GGAGGTTCTGCGTGGCTG 60.744 66.667 0.00 0.00 0.00 4.85
2223 4217 2.343758 GAGGTTCTGCGTGGCTGA 59.656 61.111 0.00 0.00 34.87 4.26
2224 4218 2.029844 GAGGTTCTGCGTGGCTGAC 61.030 63.158 0.00 0.00 36.32 3.51
2225 4219 3.050275 GGTTCTGCGTGGCTGACC 61.050 66.667 0.00 0.00 36.32 4.02
2226 4220 3.414700 GTTCTGCGTGGCTGACCG 61.415 66.667 0.00 0.00 39.70 4.79
2227 4221 4.680237 TTCTGCGTGGCTGACCGG 62.680 66.667 0.00 0.00 39.70 5.28
2239 4233 3.458163 GACCGGGGTCGAGCATGA 61.458 66.667 17.59 0.00 39.00 3.07
2240 4234 3.432051 GACCGGGGTCGAGCATGAG 62.432 68.421 17.59 4.36 39.00 2.90
2241 4235 4.227134 CCGGGGTCGAGCATGAGG 62.227 72.222 17.59 9.47 39.00 3.86
2242 4236 4.227134 CGGGGTCGAGCATGAGGG 62.227 72.222 17.59 0.00 39.00 4.30
2243 4237 2.764128 GGGGTCGAGCATGAGGGA 60.764 66.667 17.59 0.00 0.00 4.20
2244 4238 2.143419 GGGGTCGAGCATGAGGGAT 61.143 63.158 17.59 0.00 0.00 3.85
2245 4239 1.700042 GGGGTCGAGCATGAGGGATT 61.700 60.000 17.59 0.00 0.00 3.01
2246 4240 0.250081 GGGTCGAGCATGAGGGATTC 60.250 60.000 17.59 0.00 0.00 2.52
2247 4241 0.598680 GGTCGAGCATGAGGGATTCG 60.599 60.000 10.30 0.00 0.00 3.34
2248 4242 0.598680 GTCGAGCATGAGGGATTCGG 60.599 60.000 0.00 0.00 32.52 4.30
2249 4243 1.301244 CGAGCATGAGGGATTCGGG 60.301 63.158 0.00 0.00 0.00 5.14
2250 4244 1.599240 GAGCATGAGGGATTCGGGC 60.599 63.158 0.00 0.00 0.00 6.13
2251 4245 2.595754 GCATGAGGGATTCGGGCC 60.596 66.667 0.00 0.00 0.00 5.80
2252 4246 3.125376 GCATGAGGGATTCGGGCCT 62.125 63.158 0.84 0.00 0.00 5.19
2253 4247 1.533711 CATGAGGGATTCGGGCCTT 59.466 57.895 0.84 0.00 0.00 4.35
2254 4248 0.820891 CATGAGGGATTCGGGCCTTG 60.821 60.000 0.84 0.00 0.00 3.61
2255 4249 1.281925 ATGAGGGATTCGGGCCTTGT 61.282 55.000 0.84 0.00 0.00 3.16
2256 4250 1.303282 GAGGGATTCGGGCCTTGTT 59.697 57.895 0.84 0.00 0.00 2.83
2257 4251 1.000896 AGGGATTCGGGCCTTGTTG 60.001 57.895 0.84 0.00 0.00 3.33
2258 4252 2.710902 GGGATTCGGGCCTTGTTGC 61.711 63.158 0.84 0.00 0.00 4.17
2265 4259 3.140814 GGCCTTGTTGCCCGGATC 61.141 66.667 0.73 0.00 46.11 3.36
2266 4260 3.508840 GCCTTGTTGCCCGGATCG 61.509 66.667 0.73 0.00 0.00 3.69
2267 4261 2.267642 CCTTGTTGCCCGGATCGA 59.732 61.111 0.73 0.00 0.00 3.59
2268 4262 1.153168 CCTTGTTGCCCGGATCGAT 60.153 57.895 0.73 0.00 0.00 3.59
2269 4263 1.160329 CCTTGTTGCCCGGATCGATC 61.160 60.000 17.36 17.36 0.00 3.69
2270 4264 0.179073 CTTGTTGCCCGGATCGATCT 60.179 55.000 23.96 0.00 0.00 2.75
2271 4265 0.179084 TTGTTGCCCGGATCGATCTC 60.179 55.000 23.96 13.47 0.00 2.75
2272 4266 1.301009 GTTGCCCGGATCGATCTCC 60.301 63.158 23.96 10.17 0.00 3.71
2273 4267 2.507854 TTGCCCGGATCGATCTCCC 61.508 63.158 23.96 8.41 31.04 4.30
2274 4268 4.057428 GCCCGGATCGATCTCCCG 62.057 72.222 23.96 19.32 42.64 5.14
2275 4269 2.282251 CCCGGATCGATCTCCCGA 60.282 66.667 23.96 0.00 45.58 5.14
2280 4274 2.965783 ATCGATCTCCCGATGGCG 59.034 61.111 0.00 0.00 46.22 5.69
2281 4275 3.288308 ATCGATCTCCCGATGGCGC 62.288 63.158 0.00 0.00 46.22 6.53
2283 4277 4.688966 GATCTCCCGATGGCGCCC 62.689 72.222 26.77 8.57 35.83 6.13
2292 4286 4.460683 ATGGCGCCCGCGTCTTTA 62.461 61.111 26.77 0.73 45.16 1.85
2295 4289 3.551915 GCGCCCGCGTCTTTAGTC 61.552 66.667 11.18 0.00 42.09 2.59
2296 4290 3.245315 CGCCCGCGTCTTTAGTCG 61.245 66.667 4.92 0.00 34.35 4.18
2297 4291 2.884207 GCCCGCGTCTTTAGTCGG 60.884 66.667 4.92 0.00 41.41 4.79
2298 4292 2.570181 CCCGCGTCTTTAGTCGGT 59.430 61.111 4.92 0.00 40.23 4.69
2299 4293 1.804326 CCCGCGTCTTTAGTCGGTG 60.804 63.158 4.92 0.00 40.23 4.94
2300 4294 2.442188 CCGCGTCTTTAGTCGGTGC 61.442 63.158 4.92 0.00 37.33 5.01
2301 4295 2.774951 CGCGTCTTTAGTCGGTGCG 61.775 63.158 0.00 0.00 38.04 5.34
2302 4296 2.442188 GCGTCTTTAGTCGGTGCGG 61.442 63.158 0.00 0.00 0.00 5.69
2303 4297 1.080974 CGTCTTTAGTCGGTGCGGT 60.081 57.895 0.00 0.00 0.00 5.68
2304 4298 0.665369 CGTCTTTAGTCGGTGCGGTT 60.665 55.000 0.00 0.00 0.00 4.44
2305 4299 1.401409 CGTCTTTAGTCGGTGCGGTTA 60.401 52.381 0.00 0.00 0.00 2.85
2306 4300 2.257034 GTCTTTAGTCGGTGCGGTTAG 58.743 52.381 0.00 0.00 0.00 2.34
2307 4301 1.203052 TCTTTAGTCGGTGCGGTTAGG 59.797 52.381 0.00 0.00 0.00 2.69
2308 4302 0.247185 TTTAGTCGGTGCGGTTAGGG 59.753 55.000 0.00 0.00 0.00 3.53
2309 4303 0.899717 TTAGTCGGTGCGGTTAGGGT 60.900 55.000 0.00 0.00 0.00 4.34
2310 4304 1.597797 TAGTCGGTGCGGTTAGGGTG 61.598 60.000 0.00 0.00 0.00 4.61
2311 4305 3.697747 TCGGTGCGGTTAGGGTGG 61.698 66.667 0.00 0.00 0.00 4.61
2312 4306 4.011517 CGGTGCGGTTAGGGTGGT 62.012 66.667 0.00 0.00 0.00 4.16
2313 4307 2.359478 GGTGCGGTTAGGGTGGTG 60.359 66.667 0.00 0.00 0.00 4.17
2314 4308 2.745037 GTGCGGTTAGGGTGGTGA 59.255 61.111 0.00 0.00 0.00 4.02
2315 4309 1.670083 GTGCGGTTAGGGTGGTGAC 60.670 63.158 0.00 0.00 0.00 3.67
2316 4310 2.046604 GCGGTTAGGGTGGTGACC 60.047 66.667 0.00 0.00 42.27 4.02
2324 4318 2.264794 GGTGGTGACCCTAGCGTG 59.735 66.667 0.00 0.00 36.03 5.34
2325 4319 2.434359 GTGGTGACCCTAGCGTGC 60.434 66.667 0.00 0.00 0.00 5.34
2326 4320 4.063967 TGGTGACCCTAGCGTGCG 62.064 66.667 0.00 0.00 0.00 5.34
2327 4321 4.814294 GGTGACCCTAGCGTGCGG 62.814 72.222 0.00 0.00 0.00 5.69
2351 4345 4.402528 CCGGTTCGCCCATGGACA 62.403 66.667 15.22 0.00 0.00 4.02
2352 4346 2.819595 CGGTTCGCCCATGGACAG 60.820 66.667 15.22 3.86 0.00 3.51
2353 4347 2.351276 GGTTCGCCCATGGACAGT 59.649 61.111 15.22 0.00 0.00 3.55
2354 4348 2.040544 GGTTCGCCCATGGACAGTG 61.041 63.158 15.22 3.18 0.00 3.66
2355 4349 2.040544 GTTCGCCCATGGACAGTGG 61.041 63.158 15.22 0.00 36.47 4.00
2361 4355 3.254629 CCATGGACAGTGGGTTGAG 57.745 57.895 5.56 0.00 32.98 3.02
2362 4356 0.401738 CCATGGACAGTGGGTTGAGT 59.598 55.000 5.56 0.00 32.98 3.41
2363 4357 1.611673 CCATGGACAGTGGGTTGAGTC 60.612 57.143 5.56 0.00 32.98 3.36
2365 4359 2.453242 GGACAGTGGGTTGAGTCCT 58.547 57.895 0.00 0.00 45.46 3.85
2366 4360 0.765510 GGACAGTGGGTTGAGTCCTT 59.234 55.000 0.00 0.00 45.46 3.36
2367 4361 1.543429 GGACAGTGGGTTGAGTCCTTG 60.543 57.143 0.00 0.00 45.46 3.61
2368 4362 0.474184 ACAGTGGGTTGAGTCCTTGG 59.526 55.000 0.00 0.00 0.00 3.61
2369 4363 0.890996 CAGTGGGTTGAGTCCTTGGC 60.891 60.000 0.00 0.00 0.00 4.52
2370 4364 1.062488 AGTGGGTTGAGTCCTTGGCT 61.062 55.000 0.00 0.00 0.00 4.75
2371 4365 0.178990 GTGGGTTGAGTCCTTGGCTT 60.179 55.000 0.00 0.00 0.00 4.35
2372 4366 0.178992 TGGGTTGAGTCCTTGGCTTG 60.179 55.000 0.00 0.00 0.00 4.01
2373 4367 1.527433 GGGTTGAGTCCTTGGCTTGC 61.527 60.000 0.00 0.00 0.00 4.01
2374 4368 1.527433 GGTTGAGTCCTTGGCTTGCC 61.527 60.000 4.43 4.43 0.00 4.52
2375 4369 1.228552 TTGAGTCCTTGGCTTGCCC 60.229 57.895 9.35 0.00 0.00 5.36
2376 4370 2.747855 GAGTCCTTGGCTTGCCCG 60.748 66.667 9.35 0.32 35.87 6.13
2377 4371 3.249189 AGTCCTTGGCTTGCCCGA 61.249 61.111 9.35 0.00 35.87 5.14
2378 4372 2.044946 GTCCTTGGCTTGCCCGAT 60.045 61.111 9.35 0.00 35.87 4.18
2379 4373 2.115291 GTCCTTGGCTTGCCCGATC 61.115 63.158 9.35 0.00 35.87 3.69
2380 4374 3.204827 CCTTGGCTTGCCCGATCG 61.205 66.667 8.51 8.51 35.87 3.69
2381 4375 3.204827 CTTGGCTTGCCCGATCGG 61.205 66.667 27.65 27.65 35.87 4.18
2391 4385 2.435938 CCGATCGGGTGTTGGGTG 60.436 66.667 26.95 0.00 0.00 4.61
2392 4386 2.435938 CGATCGGGTGTTGGGTGG 60.436 66.667 7.38 0.00 0.00 4.61
2393 4387 2.750237 GATCGGGTGTTGGGTGGC 60.750 66.667 0.00 0.00 0.00 5.01
2394 4388 3.561120 GATCGGGTGTTGGGTGGCA 62.561 63.158 0.00 0.00 0.00 4.92
2395 4389 3.567579 ATCGGGTGTTGGGTGGCAG 62.568 63.158 0.00 0.00 0.00 4.85
2398 4392 4.947147 GGTGTTGGGTGGCAGCGA 62.947 66.667 10.99 3.46 0.00 4.93
2399 4393 2.672996 GTGTTGGGTGGCAGCGAT 60.673 61.111 10.99 0.00 0.00 4.58
2400 4394 2.672651 TGTTGGGTGGCAGCGATG 60.673 61.111 10.99 0.00 0.00 3.84
2401 4395 3.443045 GTTGGGTGGCAGCGATGG 61.443 66.667 10.99 0.00 0.00 3.51
2413 4407 2.717485 CGATGGCCGCTGATTTGG 59.283 61.111 0.00 0.00 0.00 3.28
2420 4414 3.864686 CGCTGATTTGGCGTCCCG 61.865 66.667 0.00 0.00 46.37 5.14
2421 4415 2.746277 GCTGATTTGGCGTCCCGT 60.746 61.111 0.00 0.00 0.00 5.28
2422 4416 2.750888 GCTGATTTGGCGTCCCGTC 61.751 63.158 0.00 0.00 0.00 4.79
2423 4417 2.046700 TGATTTGGCGTCCCGTCC 60.047 61.111 0.00 0.00 0.00 4.79
2424 4418 2.046700 GATTTGGCGTCCCGTCCA 60.047 61.111 0.00 0.00 33.08 4.02
2425 4419 2.046314 ATTTGGCGTCCCGTCCAG 60.046 61.111 0.00 0.00 35.40 3.86
2426 4420 2.515996 GATTTGGCGTCCCGTCCAGA 62.516 60.000 0.00 0.00 35.40 3.86
2427 4421 1.910580 ATTTGGCGTCCCGTCCAGAT 61.911 55.000 0.00 0.00 35.40 2.90
2428 4422 2.515996 TTTGGCGTCCCGTCCAGATC 62.516 60.000 0.00 0.00 35.40 2.75
2429 4423 4.222847 GGCGTCCCGTCCAGATCC 62.223 72.222 0.00 0.00 0.00 3.36
2430 4424 4.570663 GCGTCCCGTCCAGATCCG 62.571 72.222 0.00 0.00 0.00 4.18
2431 4425 3.138798 CGTCCCGTCCAGATCCGT 61.139 66.667 0.00 0.00 0.00 4.69
2432 4426 2.806237 GTCCCGTCCAGATCCGTC 59.194 66.667 0.00 0.00 0.00 4.79
2433 4427 2.827190 TCCCGTCCAGATCCGTCG 60.827 66.667 0.00 0.00 0.00 5.12
2434 4428 4.570663 CCCGTCCAGATCCGTCGC 62.571 72.222 0.00 0.00 0.00 5.19
2435 4429 4.907034 CCGTCCAGATCCGTCGCG 62.907 72.222 0.00 0.00 0.00 5.87
2446 4440 4.728102 CGTCGCGGTGTGGCCTTA 62.728 66.667 6.13 0.00 34.25 2.69
2447 4441 2.813908 GTCGCGGTGTGGCCTTAG 60.814 66.667 6.13 0.00 34.25 2.18
2448 4442 4.752879 TCGCGGTGTGGCCTTAGC 62.753 66.667 6.13 1.12 38.76 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.925185 GAACGTCGGAATCTAGGTTGC 59.075 52.381 0.00 0.00 0.00 4.17
1 2 2.182825 CGAACGTCGGAATCTAGGTTG 58.817 52.381 0.00 0.00 36.00 3.77
2 3 1.468736 GCGAACGTCGGAATCTAGGTT 60.469 52.381 8.96 0.00 40.84 3.50
3 4 0.100146 GCGAACGTCGGAATCTAGGT 59.900 55.000 8.96 0.00 40.84 3.08
4 5 0.381089 AGCGAACGTCGGAATCTAGG 59.619 55.000 8.96 0.00 40.84 3.02
5 6 1.744374 GAGCGAACGTCGGAATCTAG 58.256 55.000 8.96 0.00 40.84 2.43
6 7 0.027194 CGAGCGAACGTCGGAATCTA 59.973 55.000 8.96 0.00 40.84 1.98
7 8 1.226323 CGAGCGAACGTCGGAATCT 60.226 57.895 8.96 0.00 40.84 2.40
8 9 3.286669 CGAGCGAACGTCGGAATC 58.713 61.111 8.96 0.00 40.84 2.52
14 15 3.135056 ATAGGCCCGAGCGAACGTC 62.135 63.158 0.00 0.00 41.24 4.34
15 16 3.135056 GATAGGCCCGAGCGAACGT 62.135 63.158 0.00 0.00 41.24 3.99
16 17 2.354773 GATAGGCCCGAGCGAACG 60.355 66.667 0.00 0.00 41.24 3.95
17 18 2.354773 CGATAGGCCCGAGCGAAC 60.355 66.667 7.09 0.00 41.24 3.95
18 19 2.517638 TCGATAGGCCCGAGCGAA 60.518 61.111 12.75 0.00 41.24 4.70
19 20 2.978565 CTCGATAGGCCCGAGCGA 60.979 66.667 15.52 14.85 45.37 4.93
23 24 1.601197 GAGCTCTCGATAGGCCCGA 60.601 63.158 6.43 0.00 34.61 5.14
24 25 2.958576 GAGCTCTCGATAGGCCCG 59.041 66.667 6.43 0.00 0.00 6.13
34 35 2.124693 CCTCCCACTCCGAGCTCTC 61.125 68.421 12.85 0.00 0.00 3.20
35 36 2.043450 CCTCCCACTCCGAGCTCT 60.043 66.667 12.85 0.00 0.00 4.09
36 37 2.363147 ACCTCCCACTCCGAGCTC 60.363 66.667 2.73 2.73 0.00 4.09
37 38 2.363147 GACCTCCCACTCCGAGCT 60.363 66.667 0.00 0.00 0.00 4.09
38 39 2.363147 AGACCTCCCACTCCGAGC 60.363 66.667 0.00 0.00 0.00 5.03
39 40 2.115911 CGAGACCTCCCACTCCGAG 61.116 68.421 0.00 0.00 0.00 4.63
40 41 2.045242 CGAGACCTCCCACTCCGA 60.045 66.667 0.00 0.00 0.00 4.55
41 42 2.361357 ACGAGACCTCCCACTCCG 60.361 66.667 0.00 0.00 0.00 4.63
42 43 2.352032 CCACGAGACCTCCCACTCC 61.352 68.421 0.00 0.00 0.00 3.85
43 44 0.898789 TTCCACGAGACCTCCCACTC 60.899 60.000 0.00 0.00 0.00 3.51
44 45 0.900647 CTTCCACGAGACCTCCCACT 60.901 60.000 0.00 0.00 0.00 4.00
45 46 1.592223 CTTCCACGAGACCTCCCAC 59.408 63.158 0.00 0.00 0.00 4.61
46 47 2.283529 GCTTCCACGAGACCTCCCA 61.284 63.158 0.00 0.00 0.00 4.37
47 48 1.985116 AGCTTCCACGAGACCTCCC 60.985 63.158 0.00 0.00 0.00 4.30
48 49 1.216710 CAGCTTCCACGAGACCTCC 59.783 63.158 0.00 0.00 0.00 4.30
109 110 5.573282 CACACGTGGTATGTGTTTTGAAAAA 59.427 36.000 21.57 0.00 45.33 1.94
141 2093 0.486879 ACCTTGCCTTCCAAATCCCA 59.513 50.000 0.00 0.00 31.94 4.37
164 2116 7.038659 CCACAGAAATATTTTAATTTCGGCCA 58.961 34.615 2.24 0.00 46.10 5.36
204 2156 1.846782 CGCTAGTGATGCAGTTACGAC 59.153 52.381 0.00 0.00 0.00 4.34
205 2157 1.202256 CCGCTAGTGATGCAGTTACGA 60.202 52.381 4.44 0.00 0.00 3.43
206 2158 1.200483 CCGCTAGTGATGCAGTTACG 58.800 55.000 4.44 0.00 0.00 3.18
207 2159 2.099263 TCTCCGCTAGTGATGCAGTTAC 59.901 50.000 4.44 0.00 0.00 2.50
208 2160 2.099263 GTCTCCGCTAGTGATGCAGTTA 59.901 50.000 4.44 0.00 0.00 2.24
209 2161 1.134965 GTCTCCGCTAGTGATGCAGTT 60.135 52.381 4.44 0.00 0.00 3.16
210 2162 0.457851 GTCTCCGCTAGTGATGCAGT 59.542 55.000 4.44 0.00 0.00 4.40
211 2163 0.249238 GGTCTCCGCTAGTGATGCAG 60.249 60.000 4.44 0.00 0.00 4.41
212 2164 0.970427 TGGTCTCCGCTAGTGATGCA 60.970 55.000 4.44 0.00 0.00 3.96
213 2165 0.175760 TTGGTCTCCGCTAGTGATGC 59.824 55.000 4.44 0.00 0.00 3.91
260 2212 3.909662 GCACCACATGCGATTCCT 58.090 55.556 0.00 0.00 46.55 3.36
296 2248 7.648142 ACTACACACTTGAACAATAAATGGTG 58.352 34.615 0.00 0.00 0.00 4.17
317 2270 3.717707 TCCATATGAAGCGAGCAACTAC 58.282 45.455 3.65 0.00 0.00 2.73
358 2311 3.948719 GGGTTCCACGCACCTCCA 61.949 66.667 0.00 0.00 34.36 3.86
367 2320 2.106683 CCGCGAATCTGGGTTCCAC 61.107 63.158 8.23 0.00 0.00 4.02
415 2372 2.970324 CACACGGTGTTCCCCACG 60.970 66.667 11.82 0.00 45.52 4.94
430 2387 1.004679 CCAAAACCAGCCATGCCAC 60.005 57.895 0.00 0.00 0.00 5.01
451 2408 1.150536 ACAAGTCCCACGCCAATGT 59.849 52.632 0.00 0.00 0.00 2.71
464 2421 0.320421 ATTGCGCGTAGTCCACAAGT 60.320 50.000 8.43 0.00 0.00 3.16
491 2448 6.659824 TGGTGAAAGAAAATCCCCTCTATAC 58.340 40.000 0.00 0.00 0.00 1.47
529 2486 9.474920 CTGCAAGAAAGAAACCATTTTGTATAA 57.525 29.630 0.00 0.00 34.07 0.98
582 2539 0.603975 GCTCCACGCTTCCTTTGTCT 60.604 55.000 0.00 0.00 35.14 3.41
629 2586 0.874607 GACGCGGTGAAGTTCAGTGT 60.875 55.000 12.47 8.38 0.00 3.55
642 2599 1.268032 GCAAATTCCTACATGACGCGG 60.268 52.381 12.47 0.00 0.00 6.46
674 2631 3.863086 AGAAGATATCGGGAAGGATGGT 58.137 45.455 0.00 0.00 0.00 3.55
706 2663 4.824166 CAGCAATGCAGCGCGGTC 62.824 66.667 8.38 4.14 40.15 4.79
708 2665 2.327002 ATAACAGCAATGCAGCGCGG 62.327 55.000 8.83 2.11 40.15 6.46
709 2666 0.927083 GATAACAGCAATGCAGCGCG 60.927 55.000 8.35 0.00 40.15 6.86
717 2692 3.370978 CCGAAACGACTGATAACAGCAAT 59.629 43.478 0.00 0.00 46.95 3.56
731 2706 2.736144 ACAGATACAAGCCGAAACGA 57.264 45.000 0.00 0.00 0.00 3.85
791 2768 6.028146 TGATAAGGCACTACAAAGTCGTAA 57.972 37.500 0.00 0.00 38.49 3.18
810 2787 2.586425 GCTTGCCTGGCCTTAATGATA 58.414 47.619 17.53 0.00 0.00 2.15
1008 2990 2.203788 ACGGGGCAGGAAGAGTCA 60.204 61.111 0.00 0.00 0.00 3.41
1019 3001 2.125633 GGAAGAACTCGACGGGGC 60.126 66.667 0.00 0.00 0.00 5.80
1173 3167 1.536662 GCCAGGGAGGATCGGGTAT 60.537 63.158 0.00 0.00 41.22 2.73
1431 3425 1.153349 GCGGGCTAAGCTAAGCTGT 60.153 57.895 0.00 0.00 42.37 4.40
1465 3459 3.681593 CTGGTTTCAATTCTCCGGGTAA 58.318 45.455 0.00 0.00 0.00 2.85
1525 3519 8.688151 AGTGAGTAGTATAGAGTTGATTCAACC 58.312 37.037 22.70 15.24 44.49 3.77
1529 3523 9.116067 ACAGAGTGAGTAGTATAGAGTTGATTC 57.884 37.037 0.00 0.00 0.00 2.52
1547 3541 5.010719 AGACAAGTAATTCGGAACAGAGTGA 59.989 40.000 0.00 0.00 0.00 3.41
1548 3542 5.230942 AGACAAGTAATTCGGAACAGAGTG 58.769 41.667 0.00 0.00 0.00 3.51
1549 3543 5.470047 AGACAAGTAATTCGGAACAGAGT 57.530 39.130 0.00 0.00 0.00 3.24
1550 3544 4.559251 CGAGACAAGTAATTCGGAACAGAG 59.441 45.833 0.00 0.00 0.00 3.35
1551 3545 4.482386 CGAGACAAGTAATTCGGAACAGA 58.518 43.478 0.00 0.00 0.00 3.41
1552 3546 4.824848 CGAGACAAGTAATTCGGAACAG 57.175 45.455 0.00 0.00 0.00 3.16
1558 3552 5.769367 TCCATATCCGAGACAAGTAATTCG 58.231 41.667 0.00 0.00 0.00 3.34
1559 3553 7.155328 ACATCCATATCCGAGACAAGTAATTC 58.845 38.462 0.00 0.00 0.00 2.17
1560 3554 7.067496 ACATCCATATCCGAGACAAGTAATT 57.933 36.000 0.00 0.00 0.00 1.40
1561 3555 6.672266 ACATCCATATCCGAGACAAGTAAT 57.328 37.500 0.00 0.00 0.00 1.89
1562 3556 7.670140 AGATACATCCATATCCGAGACAAGTAA 59.330 37.037 0.00 0.00 32.76 2.24
1563 3557 7.175797 AGATACATCCATATCCGAGACAAGTA 58.824 38.462 0.00 0.00 32.76 2.24
1564 3558 6.013379 AGATACATCCATATCCGAGACAAGT 58.987 40.000 0.00 0.00 32.76 3.16
1565 3559 6.522625 AGATACATCCATATCCGAGACAAG 57.477 41.667 0.00 0.00 32.76 3.16
1566 3560 7.402862 TCTAGATACATCCATATCCGAGACAA 58.597 38.462 0.00 0.00 32.76 3.18
1567 3561 6.958767 TCTAGATACATCCATATCCGAGACA 58.041 40.000 0.00 0.00 32.76 3.41
1568 3562 7.554835 AGTTCTAGATACATCCATATCCGAGAC 59.445 40.741 0.00 0.00 32.76 3.36
1569 3563 7.634718 AGTTCTAGATACATCCATATCCGAGA 58.365 38.462 0.00 0.00 32.76 4.04
1570 3564 7.873719 AGTTCTAGATACATCCATATCCGAG 57.126 40.000 0.00 0.00 32.76 4.63
1571 3565 9.175312 GTTAGTTCTAGATACATCCATATCCGA 57.825 37.037 0.00 0.00 32.76 4.55
1572 3566 8.957466 TGTTAGTTCTAGATACATCCATATCCG 58.043 37.037 0.00 0.00 32.76 4.18
1599 3593 9.734984 TCGTAGAAATGGATGTATCTAGATGTA 57.265 33.333 15.79 4.44 0.00 2.29
1600 3594 8.516234 GTCGTAGAAATGGATGTATCTAGATGT 58.484 37.037 15.79 1.25 39.69 3.06
1601 3595 8.515414 TGTCGTAGAAATGGATGTATCTAGATG 58.485 37.037 15.79 0.00 39.69 2.90
1602 3596 8.637196 TGTCGTAGAAATGGATGTATCTAGAT 57.363 34.615 10.73 10.73 39.69 1.98
1603 3597 8.459911 TTGTCGTAGAAATGGATGTATCTAGA 57.540 34.615 0.00 0.00 39.69 2.43
1604 3598 8.353684 ACTTGTCGTAGAAATGGATGTATCTAG 58.646 37.037 0.00 0.00 39.69 2.43
1605 3599 8.234136 ACTTGTCGTAGAAATGGATGTATCTA 57.766 34.615 0.00 0.00 39.69 1.98
1606 3600 7.113658 ACTTGTCGTAGAAATGGATGTATCT 57.886 36.000 0.00 0.00 39.69 1.98
1607 3601 8.867112 TTACTTGTCGTAGAAATGGATGTATC 57.133 34.615 0.00 0.00 39.69 2.24
1608 3602 9.832445 AATTACTTGTCGTAGAAATGGATGTAT 57.168 29.630 0.00 0.00 39.69 2.29
1609 3603 9.309516 GAATTACTTGTCGTAGAAATGGATGTA 57.690 33.333 0.00 0.00 39.69 2.29
1610 3604 7.280205 GGAATTACTTGTCGTAGAAATGGATGT 59.720 37.037 0.00 0.00 39.69 3.06
1611 3605 7.516785 CGGAATTACTTGTCGTAGAAATGGATG 60.517 40.741 0.00 0.00 39.69 3.51
1612 3606 6.479001 CGGAATTACTTGTCGTAGAAATGGAT 59.521 38.462 0.00 0.00 39.69 3.41
1613 3607 5.808540 CGGAATTACTTGTCGTAGAAATGGA 59.191 40.000 0.00 0.00 39.69 3.41
1614 3608 5.808540 TCGGAATTACTTGTCGTAGAAATGG 59.191 40.000 0.00 0.00 39.69 3.16
1615 3609 6.880822 TCGGAATTACTTGTCGTAGAAATG 57.119 37.500 0.00 0.00 39.69 2.32
1616 3610 6.034256 CGTTCGGAATTACTTGTCGTAGAAAT 59.966 38.462 0.00 0.00 39.69 2.17
1617 3611 5.343058 CGTTCGGAATTACTTGTCGTAGAAA 59.657 40.000 0.00 0.00 39.69 2.52
1618 3612 4.853196 CGTTCGGAATTACTTGTCGTAGAA 59.147 41.667 0.00 0.00 39.69 2.10
1619 3613 4.406069 CGTTCGGAATTACTTGTCGTAGA 58.594 43.478 0.00 0.00 0.00 2.59
1620 3614 3.545078 CCGTTCGGAATTACTTGTCGTAG 59.455 47.826 5.19 0.00 0.00 3.51
1621 3615 3.190327 TCCGTTCGGAATTACTTGTCGTA 59.810 43.478 11.66 0.00 0.00 3.43
1622 3616 2.030007 TCCGTTCGGAATTACTTGTCGT 60.030 45.455 11.66 0.00 0.00 4.34
1623 3617 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
1624 3618 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1625 3619 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1626 3620 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1627 3621 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1628 3622 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1629 3623 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1630 3624 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1631 3625 1.755380 CTACTCCCTCCGTTCGGAATT 59.245 52.381 14.79 0.00 33.41 2.17
1632 3626 1.341778 ACTACTCCCTCCGTTCGGAAT 60.342 52.381 14.79 2.09 33.41 3.01
1633 3627 0.038744 ACTACTCCCTCCGTTCGGAA 59.961 55.000 14.79 0.04 33.41 4.30
1634 3628 0.911769 TACTACTCCCTCCGTTCGGA 59.088 55.000 13.34 13.34 0.00 4.55
1635 3629 1.755179 TTACTACTCCCTCCGTTCGG 58.245 55.000 4.74 4.74 0.00 4.30
1636 3630 5.505173 TTTATTACTACTCCCTCCGTTCG 57.495 43.478 0.00 0.00 0.00 3.95
1637 3631 8.202811 AGAATTTTATTACTACTCCCTCCGTTC 58.797 37.037 0.00 0.00 0.00 3.95
1638 3632 7.985752 CAGAATTTTATTACTACTCCCTCCGTT 59.014 37.037 0.00 0.00 0.00 4.44
1639 3633 7.498443 CAGAATTTTATTACTACTCCCTCCGT 58.502 38.462 0.00 0.00 0.00 4.69
1640 3634 6.424207 GCAGAATTTTATTACTACTCCCTCCG 59.576 42.308 0.00 0.00 0.00 4.63
1641 3635 7.280356 TGCAGAATTTTATTACTACTCCCTCC 58.720 38.462 0.00 0.00 0.00 4.30
1642 3636 8.732746 TTGCAGAATTTTATTACTACTCCCTC 57.267 34.615 0.00 0.00 0.00 4.30
1643 3637 8.957466 GTTTGCAGAATTTTATTACTACTCCCT 58.043 33.333 0.00 0.00 0.00 4.20
1644 3638 8.957466 AGTTTGCAGAATTTTATTACTACTCCC 58.043 33.333 0.00 0.00 0.00 4.30
1757 3751 6.765512 TCCACACAAATTCAAAAGAAATTCCC 59.234 34.615 0.00 0.00 0.00 3.97
1787 3781 1.136085 ACAAACGAATTCCGCACGATG 60.136 47.619 0.00 0.00 43.32 3.84
1796 3790 2.032377 TGCTCCGTGAACAAACGAATTC 60.032 45.455 0.00 0.00 46.49 2.17
1830 3824 0.164647 GCTGTGATGTGCGTGAGTTC 59.835 55.000 0.00 0.00 0.00 3.01
1852 3846 4.279420 TGTAATAACAAGCATGGTGTTGCA 59.721 37.500 17.36 3.33 45.23 4.08
1878 3872 6.128956 CGCGTATGATTTGTTTGGTCATTTTT 60.129 34.615 0.00 0.00 34.62 1.94
1879 3873 5.344665 CGCGTATGATTTGTTTGGTCATTTT 59.655 36.000 0.00 0.00 34.62 1.82
1880 3874 4.856487 CGCGTATGATTTGTTTGGTCATTT 59.144 37.500 0.00 0.00 34.62 2.32
1881 3875 4.083003 ACGCGTATGATTTGTTTGGTCATT 60.083 37.500 11.67 0.00 34.62 2.57
1882 3876 3.438781 ACGCGTATGATTTGTTTGGTCAT 59.561 39.130 11.67 0.00 36.60 3.06
1883 3877 2.809119 ACGCGTATGATTTGTTTGGTCA 59.191 40.909 11.67 0.00 0.00 4.02
1884 3878 3.160545 CACGCGTATGATTTGTTTGGTC 58.839 45.455 13.44 0.00 0.00 4.02
1885 3879 2.550606 ACACGCGTATGATTTGTTTGGT 59.449 40.909 13.44 0.00 0.00 3.67
1886 3880 2.908009 CACACGCGTATGATTTGTTTGG 59.092 45.455 13.28 0.00 0.00 3.28
1887 3881 2.338228 GCACACGCGTATGATTTGTTTG 59.662 45.455 23.78 2.12 0.00 2.93
1888 3882 2.225491 AGCACACGCGTATGATTTGTTT 59.775 40.909 23.78 0.00 45.49 2.83
1889 3883 1.804151 AGCACACGCGTATGATTTGTT 59.196 42.857 23.78 2.83 45.49 2.83
1890 3884 1.128507 CAGCACACGCGTATGATTTGT 59.871 47.619 23.78 6.01 45.49 2.83
1891 3885 1.393196 TCAGCACACGCGTATGATTTG 59.607 47.619 23.78 15.42 45.49 2.32
1892 3886 1.720805 TCAGCACACGCGTATGATTT 58.279 45.000 23.78 2.41 45.49 2.17
1893 3887 1.660607 CTTCAGCACACGCGTATGATT 59.339 47.619 23.78 5.31 45.49 2.57
1894 3888 1.280982 CTTCAGCACACGCGTATGAT 58.719 50.000 23.78 13.53 45.49 2.45
1895 3889 0.038618 ACTTCAGCACACGCGTATGA 60.039 50.000 23.78 15.85 45.49 2.15
1896 3890 1.583856 CTACTTCAGCACACGCGTATG 59.416 52.381 14.35 14.35 45.49 2.39
1897 3891 1.201647 ACTACTTCAGCACACGCGTAT 59.798 47.619 13.44 0.00 45.49 3.06
1898 3892 0.594602 ACTACTTCAGCACACGCGTA 59.405 50.000 13.44 0.00 45.49 4.42
1899 3893 0.249322 AACTACTTCAGCACACGCGT 60.249 50.000 5.58 5.58 45.49 6.01
1900 3894 0.859232 AAACTACTTCAGCACACGCG 59.141 50.000 3.53 3.53 45.49 6.01
1901 3895 1.597663 ACAAACTACTTCAGCACACGC 59.402 47.619 0.00 0.00 38.99 5.34
1902 3896 2.599848 GCACAAACTACTTCAGCACACG 60.600 50.000 0.00 0.00 0.00 4.49
1903 3897 2.287009 GGCACAAACTACTTCAGCACAC 60.287 50.000 0.00 0.00 0.00 3.82
1904 3898 1.946768 GGCACAAACTACTTCAGCACA 59.053 47.619 0.00 0.00 0.00 4.57
1905 3899 1.946768 TGGCACAAACTACTTCAGCAC 59.053 47.619 0.00 0.00 31.92 4.40
1906 3900 2.340210 TGGCACAAACTACTTCAGCA 57.660 45.000 0.00 0.00 31.92 4.41
1919 3913 4.321899 GCATCTTAGGAACAAATTGGCACA 60.322 41.667 0.00 0.00 0.00 4.57
1920 3914 4.082026 AGCATCTTAGGAACAAATTGGCAC 60.082 41.667 0.00 0.00 0.00 5.01
1921 3915 4.082081 CAGCATCTTAGGAACAAATTGGCA 60.082 41.667 0.00 0.00 0.00 4.92
1922 3916 4.427312 CAGCATCTTAGGAACAAATTGGC 58.573 43.478 0.00 0.00 0.00 4.52
1923 3917 4.463891 ACCAGCATCTTAGGAACAAATTGG 59.536 41.667 0.00 0.00 0.00 3.16
1924 3918 5.649782 ACCAGCATCTTAGGAACAAATTG 57.350 39.130 0.00 0.00 0.00 2.32
1925 3919 6.721318 TCTACCAGCATCTTAGGAACAAATT 58.279 36.000 0.00 0.00 0.00 1.82
1926 3920 6.313519 TCTACCAGCATCTTAGGAACAAAT 57.686 37.500 0.00 0.00 0.00 2.32
1927 3921 5.755409 TCTACCAGCATCTTAGGAACAAA 57.245 39.130 0.00 0.00 0.00 2.83
1928 3922 5.248477 ACTTCTACCAGCATCTTAGGAACAA 59.752 40.000 0.00 0.00 0.00 2.83
1929 3923 4.777896 ACTTCTACCAGCATCTTAGGAACA 59.222 41.667 0.00 0.00 0.00 3.18
1930 3924 5.112686 CACTTCTACCAGCATCTTAGGAAC 58.887 45.833 0.00 0.00 0.00 3.62
1931 3925 4.383118 GCACTTCTACCAGCATCTTAGGAA 60.383 45.833 0.00 0.00 0.00 3.36
1932 3926 3.133003 GCACTTCTACCAGCATCTTAGGA 59.867 47.826 0.00 0.00 0.00 2.94
1933 3927 3.133721 AGCACTTCTACCAGCATCTTAGG 59.866 47.826 0.00 0.00 0.00 2.69
1934 3928 4.118410 CAGCACTTCTACCAGCATCTTAG 58.882 47.826 0.00 0.00 0.00 2.18
1960 3954 1.655484 CCGTCATGATAGCTGCAACA 58.345 50.000 0.00 0.00 0.00 3.33
1971 3965 2.917933 CTGGAAAATAGCCCGTCATGA 58.082 47.619 0.00 0.00 0.00 3.07
1998 3992 1.873591 ACGAGGACACAAGATTGCAAC 59.126 47.619 0.00 0.00 0.00 4.17
2028 4022 2.042297 TCATGAGAGGCCGGAGAGATAT 59.958 50.000 5.05 0.00 0.00 1.63
2029 4023 1.425448 TCATGAGAGGCCGGAGAGATA 59.575 52.381 5.05 0.00 0.00 1.98
2038 4032 2.345124 AAGATTGCTCATGAGAGGCC 57.655 50.000 27.04 8.96 42.33 5.19
2071 4065 1.168714 GTGTGTTTCAGCCCCATCTC 58.831 55.000 0.00 0.00 0.00 2.75
2078 4072 0.811281 GCCCTATGTGTGTTTCAGCC 59.189 55.000 0.00 0.00 0.00 4.85
2104 4098 0.882927 TGTTAAGGGCAGTCACACGC 60.883 55.000 0.00 0.00 0.00 5.34
2105 4099 1.148310 CTGTTAAGGGCAGTCACACG 58.852 55.000 0.00 0.00 0.00 4.49
2106 4100 2.143925 GTCTGTTAAGGGCAGTCACAC 58.856 52.381 0.00 0.00 35.60 3.82
2107 4101 2.037251 GAGTCTGTTAAGGGCAGTCACA 59.963 50.000 0.00 0.00 35.60 3.58
2135 4129 2.869237 GCCGACGGGTTCCTAATATTCC 60.869 54.545 17.22 0.00 34.97 3.01
2168 4162 3.006728 TCCACCACCGGATCCACC 61.007 66.667 9.46 0.00 0.00 4.61
2169 4163 2.267961 GTCCACCACCGGATCCAC 59.732 66.667 9.46 0.00 37.41 4.02
2170 4164 3.006728 GGTCCACCACCGGATCCA 61.007 66.667 9.46 0.00 37.41 3.41
2177 4171 3.703127 GACGAGGGGTCCACCACC 61.703 72.222 0.00 0.00 41.50 4.61
2178 4172 2.920912 TGACGAGGGGTCCACCAC 60.921 66.667 0.00 0.00 45.46 4.16
2179 4173 2.603473 CTGACGAGGGGTCCACCA 60.603 66.667 0.00 0.00 45.46 4.17
2180 4174 4.083862 GCTGACGAGGGGTCCACC 62.084 72.222 0.00 0.00 45.46 4.61
2181 4175 4.436998 CGCTGACGAGGGGTCCAC 62.437 72.222 0.00 0.00 45.46 4.02
2200 4194 4.070552 ACGCAGAACCTCCTCGCC 62.071 66.667 0.00 0.00 0.00 5.54
2201 4195 2.811317 CACGCAGAACCTCCTCGC 60.811 66.667 0.00 0.00 0.00 5.03
2202 4196 2.125912 CCACGCAGAACCTCCTCG 60.126 66.667 0.00 0.00 0.00 4.63
2203 4197 2.435059 GCCACGCAGAACCTCCTC 60.435 66.667 0.00 0.00 0.00 3.71
2204 4198 2.925170 AGCCACGCAGAACCTCCT 60.925 61.111 0.00 0.00 0.00 3.69
2205 4199 2.743928 CAGCCACGCAGAACCTCC 60.744 66.667 0.00 0.00 0.00 4.30
2206 4200 2.029844 GTCAGCCACGCAGAACCTC 61.030 63.158 0.00 0.00 0.00 3.85
2207 4201 2.031163 GTCAGCCACGCAGAACCT 59.969 61.111 0.00 0.00 0.00 3.50
2208 4202 3.050275 GGTCAGCCACGCAGAACC 61.050 66.667 0.00 0.00 34.09 3.62
2209 4203 3.414700 CGGTCAGCCACGCAGAAC 61.415 66.667 0.00 0.00 34.09 3.01
2210 4204 4.680237 CCGGTCAGCCACGCAGAA 62.680 66.667 0.00 0.00 34.09 3.02
2220 4214 3.461773 ATGCTCGACCCCGGTCAG 61.462 66.667 14.11 10.75 44.77 3.51
2221 4215 3.770040 CATGCTCGACCCCGGTCA 61.770 66.667 14.11 1.02 44.77 4.02
2222 4216 3.432051 CTCATGCTCGACCCCGGTC 62.432 68.421 0.00 3.62 41.40 4.79
2223 4217 3.461773 CTCATGCTCGACCCCGGT 61.462 66.667 0.00 0.00 36.24 5.28
2224 4218 4.227134 CCTCATGCTCGACCCCGG 62.227 72.222 0.00 0.00 36.24 5.73
2225 4219 4.227134 CCCTCATGCTCGACCCCG 62.227 72.222 0.00 0.00 37.07 5.73
2226 4220 1.700042 AATCCCTCATGCTCGACCCC 61.700 60.000 0.00 0.00 0.00 4.95
2227 4221 0.250081 GAATCCCTCATGCTCGACCC 60.250 60.000 0.00 0.00 0.00 4.46
2228 4222 0.598680 CGAATCCCTCATGCTCGACC 60.599 60.000 0.00 0.00 0.00 4.79
2229 4223 0.598680 CCGAATCCCTCATGCTCGAC 60.599 60.000 0.00 0.00 0.00 4.20
2230 4224 1.742146 CCGAATCCCTCATGCTCGA 59.258 57.895 0.00 0.00 0.00 4.04
2231 4225 1.301244 CCCGAATCCCTCATGCTCG 60.301 63.158 0.00 0.00 0.00 5.03
2232 4226 1.599240 GCCCGAATCCCTCATGCTC 60.599 63.158 0.00 0.00 0.00 4.26
2233 4227 2.512896 GCCCGAATCCCTCATGCT 59.487 61.111 0.00 0.00 0.00 3.79
2234 4228 2.595754 GGCCCGAATCCCTCATGC 60.596 66.667 0.00 0.00 0.00 4.06
2235 4229 0.820891 CAAGGCCCGAATCCCTCATG 60.821 60.000 0.00 0.00 0.00 3.07
2236 4230 1.281925 ACAAGGCCCGAATCCCTCAT 61.282 55.000 0.00 0.00 0.00 2.90
2237 4231 1.497309 AACAAGGCCCGAATCCCTCA 61.497 55.000 0.00 0.00 0.00 3.86
2238 4232 1.032114 CAACAAGGCCCGAATCCCTC 61.032 60.000 0.00 0.00 0.00 4.30
2239 4233 1.000896 CAACAAGGCCCGAATCCCT 60.001 57.895 0.00 0.00 0.00 4.20
2240 4234 2.710902 GCAACAAGGCCCGAATCCC 61.711 63.158 0.00 0.00 0.00 3.85
2241 4235 2.885113 GCAACAAGGCCCGAATCC 59.115 61.111 0.00 0.00 0.00 3.01
2249 4243 3.508840 CGATCCGGGCAACAAGGC 61.509 66.667 0.00 0.00 43.27 4.35
2250 4244 1.153168 ATCGATCCGGGCAACAAGG 60.153 57.895 0.00 0.00 39.74 3.61
2251 4245 0.179073 AGATCGATCCGGGCAACAAG 60.179 55.000 21.66 0.00 39.74 3.16
2252 4246 0.179084 GAGATCGATCCGGGCAACAA 60.179 55.000 21.66 0.00 39.74 2.83
2253 4247 1.441729 GAGATCGATCCGGGCAACA 59.558 57.895 21.66 0.00 39.74 3.33
2254 4248 1.301009 GGAGATCGATCCGGGCAAC 60.301 63.158 21.66 5.16 0.00 4.17
2255 4249 2.507854 GGGAGATCGATCCGGGCAA 61.508 63.158 21.66 0.00 40.56 4.52
2256 4250 2.917751 GGGAGATCGATCCGGGCA 60.918 66.667 21.66 0.00 40.56 5.36
2257 4251 4.057428 CGGGAGATCGATCCGGGC 62.057 72.222 21.66 8.92 40.56 6.13
2258 4252 2.282251 TCGGGAGATCGATCCGGG 60.282 66.667 21.66 9.11 43.54 5.73
2275 4269 4.460683 TAAAGACGCGGGCGCCAT 62.461 61.111 30.85 10.49 44.19 4.40
2278 4272 3.551915 GACTAAAGACGCGGGCGC 61.552 66.667 12.47 0.00 44.19 6.53
2279 4273 3.245315 CGACTAAAGACGCGGGCG 61.245 66.667 12.47 12.04 46.03 6.13
2280 4274 2.884207 CCGACTAAAGACGCGGGC 60.884 66.667 12.47 1.16 40.08 6.13
2283 4277 2.774951 CGCACCGACTAAAGACGCG 61.775 63.158 3.53 3.53 32.27 6.01
2284 4278 2.442188 CCGCACCGACTAAAGACGC 61.442 63.158 0.00 0.00 32.27 5.19
2285 4279 0.665369 AACCGCACCGACTAAAGACG 60.665 55.000 0.00 0.00 0.00 4.18
2286 4280 2.257034 CTAACCGCACCGACTAAAGAC 58.743 52.381 0.00 0.00 0.00 3.01
2287 4281 1.203052 CCTAACCGCACCGACTAAAGA 59.797 52.381 0.00 0.00 0.00 2.52
2288 4282 1.636988 CCTAACCGCACCGACTAAAG 58.363 55.000 0.00 0.00 0.00 1.85
2289 4283 0.247185 CCCTAACCGCACCGACTAAA 59.753 55.000 0.00 0.00 0.00 1.85
2290 4284 0.899717 ACCCTAACCGCACCGACTAA 60.900 55.000 0.00 0.00 0.00 2.24
2291 4285 1.304381 ACCCTAACCGCACCGACTA 60.304 57.895 0.00 0.00 0.00 2.59
2292 4286 2.602568 ACCCTAACCGCACCGACT 60.603 61.111 0.00 0.00 0.00 4.18
2293 4287 2.433664 CACCCTAACCGCACCGAC 60.434 66.667 0.00 0.00 0.00 4.79
2294 4288 3.697747 CCACCCTAACCGCACCGA 61.698 66.667 0.00 0.00 0.00 4.69
2295 4289 4.011517 ACCACCCTAACCGCACCG 62.012 66.667 0.00 0.00 0.00 4.94
2296 4290 2.359478 CACCACCCTAACCGCACC 60.359 66.667 0.00 0.00 0.00 5.01
2297 4291 1.670083 GTCACCACCCTAACCGCAC 60.670 63.158 0.00 0.00 0.00 5.34
2298 4292 2.745037 GTCACCACCCTAACCGCA 59.255 61.111 0.00 0.00 0.00 5.69
2299 4293 2.046604 GGTCACCACCCTAACCGC 60.047 66.667 0.00 0.00 36.54 5.68
2307 4301 2.264794 CACGCTAGGGTCACCACC 59.735 66.667 9.89 0.00 42.90 4.61
2308 4302 2.434359 GCACGCTAGGGTCACCAC 60.434 66.667 9.89 0.00 40.13 4.16
2309 4303 4.063967 CGCACGCTAGGGTCACCA 62.064 66.667 9.89 0.00 40.13 4.17
2310 4304 4.814294 CCGCACGCTAGGGTCACC 62.814 72.222 9.89 0.90 0.00 4.02
2334 4328 4.402528 TGTCCATGGGCGAACCGG 62.403 66.667 12.67 0.00 44.64 5.28
2335 4329 2.819595 CTGTCCATGGGCGAACCG 60.820 66.667 12.67 0.00 44.64 4.44
2336 4330 2.040544 CACTGTCCATGGGCGAACC 61.041 63.158 12.67 0.00 40.81 3.62
2337 4331 2.040544 CCACTGTCCATGGGCGAAC 61.041 63.158 12.67 2.83 33.18 3.95
2338 4332 2.350895 CCACTGTCCATGGGCGAA 59.649 61.111 12.67 0.00 33.18 4.70
2343 4337 0.401738 ACTCAACCCACTGTCCATGG 59.598 55.000 4.97 4.97 36.94 3.66
2344 4338 1.611673 GGACTCAACCCACTGTCCATG 60.612 57.143 6.18 0.00 45.87 3.66
2345 4339 0.693049 GGACTCAACCCACTGTCCAT 59.307 55.000 6.18 0.00 45.87 3.41
2346 4340 2.142220 GGACTCAACCCACTGTCCA 58.858 57.895 6.18 0.00 45.87 4.02
2347 4341 0.765510 AAGGACTCAACCCACTGTCC 59.234 55.000 0.00 0.00 46.67 4.02
2348 4342 1.543429 CCAAGGACTCAACCCACTGTC 60.543 57.143 0.00 0.00 0.00 3.51
2349 4343 0.474184 CCAAGGACTCAACCCACTGT 59.526 55.000 0.00 0.00 0.00 3.55
2350 4344 0.890996 GCCAAGGACTCAACCCACTG 60.891 60.000 0.00 0.00 0.00 3.66
2351 4345 1.062488 AGCCAAGGACTCAACCCACT 61.062 55.000 0.00 0.00 0.00 4.00
2352 4346 0.178990 AAGCCAAGGACTCAACCCAC 60.179 55.000 0.00 0.00 0.00 4.61
2353 4347 0.178992 CAAGCCAAGGACTCAACCCA 60.179 55.000 0.00 0.00 0.00 4.51
2354 4348 1.527433 GCAAGCCAAGGACTCAACCC 61.527 60.000 0.00 0.00 0.00 4.11
2355 4349 1.527433 GGCAAGCCAAGGACTCAACC 61.527 60.000 6.14 0.00 35.81 3.77
2356 4350 1.527433 GGGCAAGCCAAGGACTCAAC 61.527 60.000 13.87 0.00 37.98 3.18
2357 4351 1.228552 GGGCAAGCCAAGGACTCAA 60.229 57.895 13.87 0.00 37.98 3.02
2358 4352 2.436109 GGGCAAGCCAAGGACTCA 59.564 61.111 13.87 0.00 37.98 3.41
2359 4353 2.543067 ATCGGGCAAGCCAAGGACTC 62.543 60.000 13.87 0.00 37.98 3.36
2360 4354 2.543067 GATCGGGCAAGCCAAGGACT 62.543 60.000 13.87 0.00 37.98 3.85
2361 4355 2.044946 ATCGGGCAAGCCAAGGAC 60.045 61.111 13.87 0.00 37.98 3.85
2362 4356 2.272146 GATCGGGCAAGCCAAGGA 59.728 61.111 13.87 7.27 37.98 3.36
2363 4357 3.204827 CGATCGGGCAAGCCAAGG 61.205 66.667 13.87 1.61 37.98 3.61
2364 4358 3.204827 CCGATCGGGCAAGCCAAG 61.205 66.667 26.95 6.45 37.98 3.61
2374 4368 2.435938 CACCCAACACCCGATCGG 60.436 66.667 27.65 27.65 37.81 4.18
2375 4369 2.435938 CCACCCAACACCCGATCG 60.436 66.667 8.51 8.51 0.00 3.69
2376 4370 2.750237 GCCACCCAACACCCGATC 60.750 66.667 0.00 0.00 0.00 3.69
2377 4371 3.567579 CTGCCACCCAACACCCGAT 62.568 63.158 0.00 0.00 0.00 4.18
2378 4372 4.263572 CTGCCACCCAACACCCGA 62.264 66.667 0.00 0.00 0.00 5.14
2381 4375 4.947147 TCGCTGCCACCCAACACC 62.947 66.667 0.00 0.00 0.00 4.16
2382 4376 2.672996 ATCGCTGCCACCCAACAC 60.673 61.111 0.00 0.00 0.00 3.32
2383 4377 2.672651 CATCGCTGCCACCCAACA 60.673 61.111 0.00 0.00 0.00 3.33
2384 4378 3.443045 CCATCGCTGCCACCCAAC 61.443 66.667 0.00 0.00 0.00 3.77
2396 4390 2.717485 CCAAATCAGCGGCCATCG 59.283 61.111 2.24 0.00 42.76 3.84
2397 4391 2.414594 GCCAAATCAGCGGCCATC 59.585 61.111 2.24 0.00 42.82 3.51
2415 4409 2.806237 GACGGATCTGGACGGGAC 59.194 66.667 6.47 0.00 0.00 4.46
2416 4410 2.827190 CGACGGATCTGGACGGGA 60.827 66.667 6.47 0.00 0.00 5.14
2417 4411 4.570663 GCGACGGATCTGGACGGG 62.571 72.222 19.47 2.98 0.00 5.28
2418 4412 4.907034 CGCGACGGATCTGGACGG 62.907 72.222 19.47 9.86 0.00 4.79
2429 4423 4.728102 TAAGGCCACACCGCGACG 62.728 66.667 8.23 0.00 46.52 5.12
2430 4424 2.813908 CTAAGGCCACACCGCGAC 60.814 66.667 8.23 0.00 46.52 5.19
2431 4425 4.752879 GCTAAGGCCACACCGCGA 62.753 66.667 8.23 0.00 46.52 5.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.