>input_sequence_79642
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---------------------ATGGCCACTGACTCTTCCTGCCCCGTCGAGTTCTTCCACCGCGGCGGCGGCGAC-----
-GGC------CAATGGTGCAGCCTCGGCGCCGCCTACGCCGCCGTCCGGGTCCTCCGCCCGCAGGGCCACTCCCTCGTCA
TGTACACCGGTCCCGACGACCAGCCCCACCAGCGGATCCTCTTCGCATACCCGATCCTCCCTGGCGACGCCTTCGAGAGG
CTGGACGGGTCCACGCTCTCCTGGGCGGGGCAAGGCTCCGGCGATGAGTTCGCTCTCTGCTTCCGCGACGAGGCCGCCTG
CGCAGCGGTCTGCGGCGCCATCTCCCCGGTGACGACGGCGCTTGCAGCCCTGGACGACATCGCTGACAGGCTCGAGGGGT
TGCGAGTGGCCGCGGCGGATGGGGGCGCCACCGCCGCCGGAGGGGACATCGCTTGTCGGCTCGCACAGCTTAGCTTAGCC
CGCGGGCCATGA--------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G189400
GCAACCTAGATTCCGACGTTCGCTCGGGCCTATCGAGAGCTCGGAGTGGGAGGTCTCGTGGAAGCTGGAAGCCTCGGGTC
GCTTCTCGACGGGATCGCTTTACAAAGAATTTTTCAAAACACATACCACGTGTGATT-----------------------
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--------TGAGTGGGATTTGGAAGGCAAGGTTGCTGGCCGAAATTAAAATATTTCTGTGGCAAGTTGCTCGTAAGTCGT
AACTGCATCACTAGCGGAGACCAAGTTCAGAAGAGGCACAGTCCAGGGGACAGGAATCGCATGTGGTGCGGTGCGGCATA
GGATCGCCACCA-TTTATTGTTCAAGTGTGTAGTTGCTCGCTTCATATGGAGCGCCCTCCGTGAAATAACTGGAGGTGCG
TGGAACCCA----GATTCGCGGACCTATATAGGATGGTTCAGGGCGCATCGCGTGGGGAACACCGTGTGGCATGGCTGGT
TTTGGGGACATTGGCGTGGGACTTGTGGACTACGCGCAATAAAGCGCGTATAGAGGGGATTTTCTTTCACCATCCAGCTG
ATCTTTTATACAAAATGGTTTCTTTCTTGCAGCTTTTGAAGCTTCTGGCAAAGTCAAAAGACAAAGGAAGCGTGGAGCAG
CTCGTGCTAAAGATGCGGGCAAAGTACACTGAACTTCACCGCGTCATGTAGGAATTTGCTTCCGTGGGGTACCATCCTTC
CCGATATCTTCTAGAAGTCGTCGACC------------------GCGCTGCATTGCTGTTATCAGTCGTTTCGGCTTGTA
TC--TGTACTTTTTTATTTTGTTCTGTTTCCATTTTGTTAGACTCTTTTACGACTTTGTAGTGCCTTATCATTAAGGCCA
GGCAAGCGCTTCCTTTCAAAAAAAAAAAACATTACGAGTC----AACAAAAAAAATGCCTTTGGTTGAAGAAGAAAAAAA
TCAGTTGCAACTTTCACGCCAATTTGATTCATCGTCGGGGAGATCTCCTAGTGGAGGCATAGCATAGGGCTTTCTCCTCT
-CCCATCGCTCGGCCGGTCCAATGGCCACTGACTCTTCCTGCCCCGTCGAGTTCTTCCACCGCGGCGGCGGCGAC-----
-GGC------CAATGGTGCAGCCTCGGCGCCGCCTACGCCGCCGTCCGGGTCCTCCGCCCGCAGGGCCACTCCCTCGTCA
TGTACACCGGTCCCGACGACCAGCCCCACCAGCGGATCCTCTTCGCATACCCGATCCTCCCTGGCGACGCCTTCGAGAGG
CTGGACGGGTCCACGCTCTCCTGGGCGGGGCAAGGCTCCGGCGATGAGTTCGCTCTCTGCTTCCGCGACGAGGCCGCCTG
CGCAGCGGTCTGCGGCGCCATCTCCCCGGTGACGACGGCGCTTGCAGCCCTGGACGACATCGCTGACAGGCTCGAGGGGT
TGCGAGTGGCCGCGGCGGATGGGGGCGCCACCGCCGCCGGAGGGGACATCGCTTGTCGGCTCGCACAGCTTAGCTTAGCC
CGCGGGCCATGAACTGGGTTACCCGGAGAATTGAAACCAGCCAGATCAAGTAGGTTTTTGCCATAACACCGTCGTGTTGG
TTGAATCAACTCTATACTACTCACTCTGTTCCGAATTACTTGTCTCGGATATGGATGTATCTAGAACTAACATACATCTA
GATACATCCATTTCTACGACAAGTAATTCCGAACGGAGGGAGTAGTAATAAAATTCTGCAAACTTTTCTTCAGCAGTTTA
CATCGCTTTGTTCCAAAACTGCAATTGTTAACGCAACAGATGGAAAGATTGCAGACTATGATGCCCAGTAGGGAATTTCT
TTTGAATTTGTGTGGAATCCCATCGTGCGGAATTCGTTTGTTCACGGAGCAGAGACATATTTTGAACTCACGCACATCAC
AGCAGTGCAACACCATGCTTGTTATTACAGAAAAAATGACCAAACAAATCATACGCGTGTGCTGAAGTAGTTTGTGCCAA
TTTGTTCCTAAGATGCTGGTAGAAGTGCTGAATTGTTGCAGCTATCATGACGGGCTATTTTCCAGCTGAACGTTGCAATC
TTGTGTCCTCGTCCATGTACCATATCTCTCCGGCCTCTCATGAGCAATCTTTACCTGCAAAAACGAGATGGGGCTGAAAC
ACACATAGGGCGTCAGGGCGTGTGACTGCCCTTAACAGACTCACGTTGGGAATATTAGGAACCCGTCGGCCTGGACGGCG
CGGTGGATCCGGTGGTGGACCCCTCGTCAGCGCGGCGAGGAGGTTCTGCGTGGCTGACCGGGGTCGAGCATGAGGGATTC
GGGCCTTGTTGCCCGGATCGATCTCCCGATGGCGCCCGCGTCTTTAGTCGGTGCGGTTAGGGTGGTGACCCTAGCGTGCG
GCGATGGCCGGTTCGCCCATGGACAGTGGGTTGAGTCCTTGGCTTGCCCGATCGGGTGTTGGGTGGCAGCGATGGCCGCT
GATTTGGCGTCCCGTCCAGATCCGTCGCGGTGTGGCCTTAGCCGGCCGACGA
>chr4D_50
-------------------------------------------------GAGGTCTCGTGGAAGCTGGAAGCCTCGGGTT
GCTTCTTGACGGGATCACTTTACAAATAAATTTCCAAAACACATACCACGTGTGATTTGTGTTGAAAATATGCCCTAGAG
GCAATAATAAATTGGTTATTATTATATTTCCTTGTTCATGATAATCGTTTATTATCCATGCTAGAATTGTATTGATAGGA
AACTCAGATACATGTGTGGATAGATAGACAACACCATGTCCCTAGTAAGCCTCTAGTTGACTAGCTCGTTGATCAATAGA
TGGTTACGGTTTCCTGACCATGGACATTGGATGTCGTTGATAACAGGATCACATCATTGGGAGAATGATGTGATGGACAA
GACCCAATCCTAAGCCTAGCACAAGATCGTGTAGTTCGTTTGCTAAGAGCTTTTCTAATGTCAAGTATCATTTCCTTAGA
CCATGAGGTTGTGCAACTCCCGGATACCGTAGGAATGCTTTGGGTGTACCAAACGTCACAACGTAACTGGGTGGCTATAA
AGGTGCACTACAGGTATCTCCGAAAGTGTCTGTTGGGTTGGCACGAATCGAGACTGGGATTTGTCACTCCGTGTATACGG
AGAGGTATCTCTGGGCCCACTCGGTAGGACATCATCATAATGTGCACAATGTGACCAAGGAGTTGATCACGGGATGATGT
GTTAGGGAACGAGTAAAGAGACTTGCCGGTAACGAGATTGAACAAGGTATGGGGATACCGACGATCGAATCTCGGGCAAG
TAACATACCGTTTGACAAAGGGAATTGCATACGGATTGATTGAATCCTCGACATCGTGGTTCATCCGATGAGATCATCGA
GGAGCATGTGGGAGCCAACATGGGTATCCAGATCCCGCTGTTGGTTATCGACCAGAGAGTCGTCTCGGTCATGTCTGCGT
GTCTCCCGAACCCGTAGGGTCTACACACTTAAGGTTCGGTGACGCTAGGGTTGTAGAGATATTAGTATGCGGTAACCCCA
AATTTGTTCGGAGTCCCGGATGAGATCCCGGACGTCACGAGGAGTTCCGGAATGGTCCGGAGGTGAAGAATTATATATAG
GAAGTCCAGTTTCGGCCACCGGGAAAGTTTCGGGGGTTATCGGTATTGTACCGGGACCACCGGAAGGGTCCCGGGGGTCC
ACCGGGTGGGGCCACCTATCCCAGAGGGCCCCATGGGCTGAAGTGGGAGGGGAACCAGCCCCTAGTGGGCTGGTGCACCC
CCCATGGGCCTCCCCCTGCGCCTAGGGTTGGAAACCCTGGGGGTGGGGGCGCCCCACCTGGCTTGGGGGGCAAGTTTCCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGGGCCGGCGCCCCCCAGGGGGCCTATATATAGTGGGGGGGAGGG
CAGCAGTACCCTAGCCCCTGGCGCCTCCCTCTCCCTCCCGTGACACCTCTCCCTCCCGTTAGTGCTTGGCGAAGCCCTGC
CGGGATCCCCGCTACTTCCACCACCACGCCGTCGTGCTGCTGGATCTCCATTAACCTCTCCTCCCCCCTTGCTGGATCAA
GGAGGAGGAGACGTCGTTGCTCCGTACGTGTGTTGAACGCGGAGGTGTCGTCCGTTCGGCGCTAGGATCATCGGTGATTT
GGATCACGACGAGTACGACTCCATCAACCCCGTTCTCTTGAACGTTTCCGCTCGCGATCTACAAGGGTATGTAGATGCAC
TCCTTCCCTCTCGTTGCTAGTAAACTCCATAGATTGATCTTGGTGATGCGTAGAAAATTTTGAATTTCTGCTACGTTACC
CAACAATTTGAGCGGGATTTGGAAGGCAAGGTTGCCAGCCGAAATT-AAATATTTCTGTGGCAAGTTGCTCGTAACCG--
-----CATCATTAGCGGAGACCAAGTTCAGAAGAGGCACGGTCTAGGGGACGGGAATTGCGTGTGGTGCCGTGCGGCATA
GGATCGCGACCA-TTTATTGTTCAAGTGTATAGTTGCTCGCTTTAGATGGAGCGT-CTCCGTGAAATAACCGGAGGTGCT
TGGAACCCAAGTGGATTCGTGGACCTATATAGGATGGTTCAGGGCGCATCGGGTGGGGAACACCGTCTGGCATGGCTGGT
TTTGGGGGCATTGGCATGGACCTTGTGGACTACACGCAATAAAGCGCTTATAGAGGGGATTTTTTTTCACCATTCAGCTG
ATCTTCTATACAAAATGGTCTCTTTCTTGCAGCTTTTGAAGCTCA-GGCAAAGTCAAAGGACAAAGGGAGCGTGGAGCAG
CTCGTGCTAAAGATGCGGGCAAAGTGCACTGAACTTCATCGCGTCGGGTAGGAATTTGCTTCCGTAGGGTGCCATCCTTC
CCGATATCTTCTGGGAGTCGGCAATGTTAGTTGGCTTGCGATCGGCGTTGTGTTGCTGTTATCAACCGTTTCGGCTTGTA
TC--T--ACTCTTTTATTTTGTTCTGTTTCCATTTTGTTAGACTCTTGTACGACTTTGTAGGGCCTCATCATTAAGGCCA
GGCAAGCGCCTCCTTTCAAAAAAAAAAAT--TTACGAGTCAACAA--AAAAAAAACGCCTTTGGTTGAAGAAGAGAAAAA
TCAGTTGCAACTTTCACGCCAATTTGATTCATCGTCGGGGAGATCTCCTAGTGGACGCATAGCATAGGGCTTTCTCCTCT
CCCCATCGCTCGGCCGGTCCAATGGCCACCGACTCTTCCTACCCCGTCGAGTTCTTCCACCGCGGCGGCGGCGAC-----
-GGCGACGGCCAATGGTGCAGCCTCGGCGCCGCCTACGCCGCCGTCCGGGTCCTCCGCCCGCAGGGCCACTCCCTCGTCA
TGTACACCGTTCCCGACGACCGGCCCCACCAGCGGATCCTCTTCGCGTACCCGATCCTCCCTGGCGACGCCTTCGAGAGG
CTGGACGGGTCCACGCTCTCCTGGGCGGGGCAAGGCTCCGGCGATGAGTTTGCTCTCTGCTTCCGCGACGAGGCCGCCTG
CGCAGCGATCTGCGGCGCCATCTCCCCGGTGACGACGGCGCTTGCAGCCCTGGACGACATCGCTGACAGGCTCGAGGGGT
TGCGAGTGGCCGCGGCGGAGGGGGGCGCCACGGCCGCCGGAGGGGACATCGCTTGTCGGCTCGCGCAGCTTAGCTTAGCC
CGCGGGCCATGAACTGGGCTACCCGGAGAATTGAAACCAGCCAGATCAAGTAGGTTTTTGCCATAGCACCGTCGTGTTA-
TTCAATCAACTCTATACTACGT----------------------------------------------------------
-----------------------------------------------ATAAAATTCTGCAAACTTTTCTTCAGCAGTTTA
CATCGCTTTGTTCCAAAACTGCAATTGTTAAAGCAACAGATGGAAAGATTGCAGACTATGATGCCCAGTAAGGAATTTCT
TTTGAATTTCGAAAGATTGCAG----------------------------------------------------------
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------------------ACC--ATCTCTCCAGCCTCTCATGAGCAATCTTTACCTGCAAAAACAAGATGGAGCTGAAAC
ACACATGGGGCGT--------GTGACTGCCCTTAACAGACTCACGTTGCGACTATTAGGAACCTGTCG------------
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>chr4B_50
-------------------------------------------------GAGGTCTCGTGGAAGCTGGAAGCCTCGGGCT
GCTTCTCGACAAGATCGCTTTACAAAGAAATCTTCAAAACACATTCCACGTGTGA-------------------------
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------TTTGAGCGGGATTTGGAAGGCAAGGTTGCCGGCCAAAATTAAAATATTTCTGTGGCAAGTTGCTCGTAACCA--
-----CATCGCTAGCGGAGAACAAGTTCAGAAGAGGCACGGTCCA-GGGACGGGAATTACGTGTGGTGCGGCGCGGCATA
GGATCACTACCATTTTATTGTTCAGGTGTATAGTTGCTCGCTTCATGTGGAGC-CCCTCCATGAAATAACCAGAGGTGCT
TGGAACCCAAGTGGGTTCGCGGACCTATATAGGATGGTTCAGGACGCGTCGGATG-GGAACGGTGTCTGGCATGGCTAGT
TTTTGAGGCATTGGCGTGGGCCTTGTGGACTATGCGC---AAAGCGCTTATAGAGGGGATTTCTTTTCACCATCCAACTG
ATCTTCTATACAAAATGGCCTCTTT------GCTTTTGAAGCTTCTGGCAAAATTAAAGGACAAAGGAAGCGTGGAGGAG
CTCGTGCTAAAGGTGCGGGCAAAGTGCACTGAACTTCGTCCCGTCGGGTAGGAATTTGCTTTAGTGGGGTGCCATCCTTC
CCGACATCTTCTGGGAGTCGTCAGTGTTAGTTGGCCTGTAACCGGCTCTGCGTCGCTGTTATCAGCCGTTTCGGCTTGTA
TCTGT--ACTCTTTTATTTTGTTTCGTTTCCATTTCATTAGACTCTTGTATGACTTTGTAAGGCCACGTCATTAAGGCCG
GGCAAGCACCTTCTTC---AAAAAAATAACATTACGAGTC----A--AAAAAAAATGCCTTTGGTTGAAGAAGAAAAAAA
TCAGTTGCAACTTTCACGCCAATTTGATTCATCGTCGGGGAGATCTCCTAGTGGACGCATAGCATAGGGCTTTCTCCTCT
CCCCATCGCTCGGCCGGTCCAATGGCCACCGACTCTTCCTACCCCGTCGAGTTCTTCCACCGCGGCGGCGGCGACGGCGA
CGGCGACGGCCAATGGTGCAGCCTCGGCGCCGCCTACGCCGCCGTCCGGGTCCTCCGCCCGCAGGGCCACTCCCTCGTCA
TGTACACCGTTCCCGACGACCGGCCCCACCAGCGGATCCTCTTCGCGTACCCGATCCTCCATGGCGACGCCTTCGAGAGG
CTGGACGGGTCCACGCTCTCCTGGGCGGGGCAAGGCTCCGGCGATGAGTTTGCTCTCTGCTTCCGCGACGAGGCCGCCTG
CGCAGCGATCTGCGGCGCCATCTCCCCGGTGACGACGGCGCTTGCAGCCCTGGACGACATCGCTGACAGGCTCGAGGGGT
TGCGAGTGGCCGCGGCGGAGGGGGGCGCCACGGCCGCCGGAGGGGACATCGCTTGTCGGCTCGCGCAGCTTAGCTTAGCC
CGCGGGCCATGAACTGGGCTACCCGGAGAATTGAAACCAGCCAGATCAAGTAGGTTTTTGCCATAGCACCGTCGTGTTAG
TTCAATCAACTCTATACTACGT----------------------------------------------------------
-----------------------------------------------ATAAATTTCTGCAAACTTTTCTTCAGCAGTTTA
CATCGCTTTGTTCCGAAACTGCAATTGTTAACGCAACAGATGGAAAGATTGCAGACTATGATGCCCAGTAAGGAATTTCT
TTTGAATTTGGGTGGAACCCAATCGTGCGAAATTCGTTTGTTCACGGAGCAGAGACATATTTTCAACTCACGCACATCAC
AGCAGGGCAACACCGTGCTGAAGTTTCTTT--------------------------------------------------
--------TAAGATGCTGGTAGAAGTGCTGAATGGTTGCAGCTACCATGACGGGCTATTTTCCAGCTGAACCTTGCAATC
TTGTATCCTCGTTCATGTACC--ATCTCTCCAGCCTCTCATGAGCAATCTTTACCTGCAAAAACAAGATGGAGCTGAAAC
ACACATAGGACGT--------GTGACTGCCCTTAACAGGCTCACGTTGCGAATATTAGGAACCTGTCG------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------S
-----------------------------S--------------------------------------------------
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------------S----------------------S---------------------------------------SSSSS
SSSSS----------------------------------S-----------S-----S--S-------------------
-------S---------------------S----------------------------------------S--------S
---------------------------------------------------S--------------S-------------
-------S------------S--------------------------S---------------S----------------
-----S-------------S--------------------------------------S---------------------
-------------------------S------------S------SS-----------------------S---------
------------S-S-------S-SS-------------------------S-------------S--------------
-----SS---S------------------------------------S-------------S----S-------------
---------S-----------------------------------SS---------------------------------
-------------------------------------------------------S------------------------
-----------------------------S----------S---------------------------------------
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---------S-----------S------------------------S---------------------------------
--------------------------------------------------S-----------------------------
-------S------------------------------------------------------------------------
-------------------S-----------S--------------------------------S---------------
------------------S----------------------------------------------S------------S-
--S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------
----------------------------------------------------------------------S---------
----------S---------S--------S---------------------------------S----------------
-----S--------S----SSSSS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSS-------------------------S----------S--------------------------S--------
----S-------S--------SS--------S--------------------------------S------S--------
-------------SSSSSSSS---------------------------S--------------S----SSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_26
------TAGATTCCGACGTTCGCTCG------------------------------------------------------
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>reverse_3889
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------------------------------------------------TCATACGCGTGTGCTGAAGT------------
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