Multiple sequence alignment - TraesCS4A01G186400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G186400 chr4A 100.000 2751 0 0 1 2751 465525129 465522379 0.000000e+00 5081
1 TraesCS4A01G186400 chr4A 84.991 573 78 7 1091 1662 648784545 648785110 2.380000e-160 575
2 TraesCS4A01G186400 chr4A 94.863 292 14 1 2461 2751 456273888 456274179 3.230000e-124 455
3 TraesCS4A01G186400 chr4B 90.564 922 39 17 904 1788 172397238 172398148 0.000000e+00 1177
4 TraesCS4A01G186400 chr4B 88.397 836 63 16 1 824 172396427 172397240 0.000000e+00 976
5 TraesCS4A01G186400 chr4B 83.019 477 68 10 1775 2242 172450005 172450477 1.180000e-113 420
6 TraesCS4A01G186400 chr4B 87.097 217 28 0 2240 2456 172450525 172450741 2.120000e-61 246
7 TraesCS4A01G186400 chr4D 92.288 765 40 2 904 1649 111610848 111611612 0.000000e+00 1068
8 TraesCS4A01G186400 chr4D 86.325 819 62 17 1 808 111610059 111610838 0.000000e+00 846
9 TraesCS4A01G186400 chr4D 91.333 150 13 0 1757 1906 111611763 111611912 3.590000e-49 206
10 TraesCS4A01G186400 chr7A 85.911 582 62 14 1091 1665 40987894 40988462 1.090000e-168 603
11 TraesCS4A01G186400 chr7A 93.857 293 17 1 2460 2751 161966545 161966253 9.040000e-120 440
12 TraesCS4A01G186400 chr7A 92.715 302 20 2 2452 2751 310356762 310357063 4.210000e-118 435
13 TraesCS4A01G186400 chr7D 84.111 579 79 8 1089 1665 41592322 41592889 5.180000e-152 547
14 TraesCS4A01G186400 chr2A 94.198 293 15 2 2461 2751 723969319 723969611 1.940000e-121 446
15 TraesCS4A01G186400 chr1A 94.198 293 16 1 2460 2751 586534618 586534326 1.940000e-121 446
16 TraesCS4A01G186400 chr1A 93.878 294 16 2 2460 2751 365020380 365020673 2.510000e-120 442
17 TraesCS4A01G186400 chr1A 94.505 91 4 1 821 910 242063607 242063697 3.690000e-29 139
18 TraesCS4A01G186400 chr1A 92.784 97 5 2 820 914 313905850 313905946 3.690000e-29 139
19 TraesCS4A01G186400 chr3A 94.178 292 16 1 2461 2751 53283921 53283630 6.990000e-121 444
20 TraesCS4A01G186400 chr3A 93.355 301 19 1 2452 2751 110290174 110290474 6.990000e-121 444
21 TraesCS4A01G186400 chr3A 92.632 95 6 1 822 915 620584154 620584060 4.780000e-28 135
22 TraesCS4A01G186400 chr5A 93.289 298 18 2 2456 2751 197155666 197155369 3.250000e-119 438
23 TraesCS4A01G186400 chr5A 92.784 97 5 2 820 914 24414749 24414653 3.690000e-29 139
24 TraesCS4A01G186400 chr5D 90.826 109 6 4 826 932 181883422 181883316 2.860000e-30 143
25 TraesCS4A01G186400 chr5D 93.617 94 4 2 815 907 446316099 446316191 3.690000e-29 139
26 TraesCS4A01G186400 chr6A 92.784 97 5 2 819 913 204478549 204478645 3.690000e-29 139
27 TraesCS4A01G186400 chr2D 90.385 104 8 2 822 923 650861393 650861496 4.780000e-28 135
28 TraesCS4A01G186400 chr2B 90.291 103 7 3 815 915 715721728 715721829 6.180000e-27 132


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G186400 chr4A 465522379 465525129 2750 True 5081.000000 5081 100.0000 1 2751 1 chr4A.!!$R1 2750
1 TraesCS4A01G186400 chr4A 648784545 648785110 565 False 575.000000 575 84.9910 1091 1662 1 chr4A.!!$F2 571
2 TraesCS4A01G186400 chr4B 172396427 172398148 1721 False 1076.500000 1177 89.4805 1 1788 2 chr4B.!!$F1 1787
3 TraesCS4A01G186400 chr4B 172450005 172450741 736 False 333.000000 420 85.0580 1775 2456 2 chr4B.!!$F2 681
4 TraesCS4A01G186400 chr4D 111610059 111611912 1853 False 706.666667 1068 89.9820 1 1906 3 chr4D.!!$F1 1905
5 TraesCS4A01G186400 chr7A 40987894 40988462 568 False 603.000000 603 85.9110 1091 1665 1 chr7A.!!$F1 574
6 TraesCS4A01G186400 chr7D 41592322 41592889 567 False 547.000000 547 84.1110 1089 1665 1 chr7D.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
966 979 0.385751 ACTCCATGATACTCGCGTGG 59.614 55.0 13.32 8.22 42.52 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2631 2841 0.035317 TGTTGCTTCCGCTGACTCAT 59.965 50.0 0.0 0.0 36.97 2.9 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 7.389607 GGTCTACTCACCTTTATTAAGCAAACA 59.610 37.037 0.00 0.00 33.08 2.83
88 89 3.380471 AAGTTAATGGGCTGCCATGTA 57.620 42.857 22.05 5.68 0.00 2.29
91 92 2.558359 GTTAATGGGCTGCCATGTATCC 59.442 50.000 22.05 1.06 0.00 2.59
92 93 0.855598 AATGGGCTGCCATGTATCCT 59.144 50.000 22.05 0.00 0.00 3.24
168 174 4.153184 ATGGTTGCTTCTGGACCACAGT 62.153 50.000 0.00 0.00 45.46 3.55
169 175 5.943013 ATGGTTGCTTCTGGACCACAGTC 62.943 52.174 0.00 0.00 45.46 3.51
185 191 2.513738 ACAGTCTCTCTCTCTATGGCCT 59.486 50.000 3.32 0.00 0.00 5.19
186 192 3.719479 ACAGTCTCTCTCTCTATGGCCTA 59.281 47.826 3.32 0.00 0.00 3.93
187 193 4.202461 ACAGTCTCTCTCTCTATGGCCTAG 60.202 50.000 3.32 3.46 0.00 3.02
211 217 2.757980 TAGGAAAAGCCCCACGCCAC 62.758 60.000 0.00 0.00 38.78 5.01
230 237 3.303132 CCACGTTGCTTGTGTCTTACTTC 60.303 47.826 0.00 0.00 35.56 3.01
242 249 5.534654 TGTGTCTTACTTCCATTCCCTTTTG 59.465 40.000 0.00 0.00 0.00 2.44
269 276 7.745620 AAGAAATAGACGGACAAGAAATGTT 57.254 32.000 0.00 0.00 44.12 2.71
292 299 1.973281 CCCGCTCACAATTGCACCT 60.973 57.895 5.05 0.00 0.00 4.00
357 364 5.531659 TCGAGTCTCATTATTACCACCTCTC 59.468 44.000 0.00 0.00 0.00 3.20
364 371 1.794714 ATTACCACCTCTCGGAGCAT 58.205 50.000 0.00 0.00 0.00 3.79
383 390 7.064134 CGGAGCATTTCTTTGTGTATACACTTA 59.936 37.037 30.69 18.83 46.55 2.24
429 436 1.197721 CGATTTGCAGGCCGGAATATC 59.802 52.381 5.05 5.59 0.00 1.63
499 506 1.198637 GAGTGAGGAGCAACAATGTGC 59.801 52.381 0.00 0.00 45.28 4.57
516 523 2.202046 CGTCGTCACATGCAACGC 60.202 61.111 13.89 9.20 38.72 4.84
639 646 7.875971 AGTTATGTTGGTCTAAAAGAAGCTTG 58.124 34.615 2.10 0.00 0.00 4.01
746 759 4.898607 ACGTGTTGGGCAAGTGAT 57.101 50.000 0.00 0.00 38.34 3.06
747 760 2.629002 ACGTGTTGGGCAAGTGATC 58.371 52.632 0.00 0.00 38.34 2.92
749 762 0.798776 CGTGTTGGGCAAGTGATCTC 59.201 55.000 0.00 0.00 0.00 2.75
750 763 1.609061 CGTGTTGGGCAAGTGATCTCT 60.609 52.381 0.00 0.00 0.00 3.10
751 764 2.508526 GTGTTGGGCAAGTGATCTCTT 58.491 47.619 4.18 4.18 0.00 2.85
770 783 2.031465 GGCTTTTCCCGACGGTCA 59.969 61.111 13.94 0.00 0.00 4.02
819 832 2.674357 GCAGTTTTAAGGCCGATCGTAA 59.326 45.455 15.09 3.03 0.00 3.18
820 833 3.311596 GCAGTTTTAAGGCCGATCGTAAT 59.688 43.478 15.09 0.00 0.00 1.89
821 834 4.785341 GCAGTTTTAAGGCCGATCGTAATG 60.785 45.833 15.09 0.00 0.00 1.90
822 835 4.331717 CAGTTTTAAGGCCGATCGTAATGT 59.668 41.667 15.09 0.00 0.00 2.71
823 836 5.521010 CAGTTTTAAGGCCGATCGTAATGTA 59.479 40.000 15.09 0.00 0.00 2.29
824 837 6.202188 CAGTTTTAAGGCCGATCGTAATGTAT 59.798 38.462 15.09 0.00 0.00 2.29
825 838 6.764560 AGTTTTAAGGCCGATCGTAATGTATT 59.235 34.615 15.09 1.76 0.00 1.89
826 839 6.774354 TTTAAGGCCGATCGTAATGTATTC 57.226 37.500 15.09 0.00 0.00 1.75
827 840 3.314541 AGGCCGATCGTAATGTATTCC 57.685 47.619 15.09 1.13 0.00 3.01
828 841 2.028385 AGGCCGATCGTAATGTATTCCC 60.028 50.000 15.09 0.00 0.00 3.97
829 842 2.028385 GGCCGATCGTAATGTATTCCCT 60.028 50.000 15.09 0.00 0.00 4.20
830 843 3.251571 GCCGATCGTAATGTATTCCCTC 58.748 50.000 15.09 0.00 0.00 4.30
831 844 3.846360 CCGATCGTAATGTATTCCCTCC 58.154 50.000 15.09 0.00 0.00 4.30
832 845 3.499048 CGATCGTAATGTATTCCCTCCG 58.501 50.000 7.03 0.00 0.00 4.63
833 846 3.057736 CGATCGTAATGTATTCCCTCCGT 60.058 47.826 7.03 0.00 0.00 4.69
834 847 4.154737 CGATCGTAATGTATTCCCTCCGTA 59.845 45.833 7.03 0.00 0.00 4.02
835 848 5.335113 CGATCGTAATGTATTCCCTCCGTAA 60.335 44.000 7.03 0.00 0.00 3.18
836 849 5.850557 TCGTAATGTATTCCCTCCGTAAA 57.149 39.130 0.00 0.00 0.00 2.01
837 850 5.591099 TCGTAATGTATTCCCTCCGTAAAC 58.409 41.667 0.00 0.00 0.00 2.01
838 851 5.360714 TCGTAATGTATTCCCTCCGTAAACT 59.639 40.000 0.00 0.00 0.00 2.66
839 852 6.545666 TCGTAATGTATTCCCTCCGTAAACTA 59.454 38.462 0.00 0.00 0.00 2.24
840 853 7.068103 TCGTAATGTATTCCCTCCGTAAACTAA 59.932 37.037 0.00 0.00 0.00 2.24
841 854 7.869429 CGTAATGTATTCCCTCCGTAAACTAAT 59.131 37.037 0.00 0.00 0.00 1.73
849 862 7.224522 TCCCTCCGTAAACTAATATAAGAGC 57.775 40.000 0.00 0.00 0.00 4.09
850 863 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
851 864 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
852 865 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
853 866 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
854 867 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
855 868 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
856 869 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
926 939 7.833285 AGTAAATCCAAAAGTACACATGGTT 57.167 32.000 0.00 1.16 34.50 3.67
966 979 0.385751 ACTCCATGATACTCGCGTGG 59.614 55.000 13.32 8.22 42.52 4.94
979 992 4.602259 CGTGGTGAGCGTGGTGGT 62.602 66.667 0.00 0.00 0.00 4.16
1040 1059 4.326826 TCAATCTTCCAACACCTCACATC 58.673 43.478 0.00 0.00 0.00 3.06
1080 1099 2.936498 CACATACACAAGACGGAATCCC 59.064 50.000 0.00 0.00 0.00 3.85
1107 1126 1.101331 CAATGGCTTCCTTCTCCTGC 58.899 55.000 0.00 0.00 0.00 4.85
1249 1298 0.660595 CTTCGACGTCACGTTCTGCT 60.661 55.000 17.16 0.00 41.37 4.24
1299 1348 2.202756 GGCTACCAAGACCTCGCG 60.203 66.667 0.00 0.00 0.00 5.87
1524 1573 0.173481 CGACAGCGATCCTGGAGAAA 59.827 55.000 1.52 0.00 46.14 2.52
1569 1618 0.905337 AGGGTGGGTTCGAGAAGAGG 60.905 60.000 0.00 0.00 0.00 3.69
1681 1730 1.130561 GAAACGGACATTGCTGCTACC 59.869 52.381 0.00 0.00 0.00 3.18
1742 1802 9.268268 TCGTATATTGCATACCTTTTCTTTAGG 57.732 33.333 0.00 0.00 38.79 2.69
1743 1803 8.504005 CGTATATTGCATACCTTTTCTTTAGGG 58.496 37.037 0.00 0.00 37.09 3.53
1744 1804 9.350951 GTATATTGCATACCTTTTCTTTAGGGT 57.649 33.333 0.00 0.00 37.09 4.34
1746 1806 7.881775 ATTGCATACCTTTTCTTTAGGGTAG 57.118 36.000 0.00 0.00 37.67 3.18
1748 1808 5.190677 GCATACCTTTTCTTTAGGGTAGCA 58.809 41.667 0.00 0.00 37.67 3.49
1749 1809 5.828328 GCATACCTTTTCTTTAGGGTAGCAT 59.172 40.000 0.00 0.00 37.67 3.79
1750 1810 6.996282 GCATACCTTTTCTTTAGGGTAGCATA 59.004 38.462 0.00 0.00 37.67 3.14
1845 2002 2.615447 TGTACCGATGATCCTACGTGTC 59.385 50.000 0.00 0.00 0.00 3.67
1856 2013 1.002142 CCTACGTGTCGTCTGTTGTCA 60.002 52.381 0.00 0.00 41.54 3.58
1857 2014 2.542205 CCTACGTGTCGTCTGTTGTCAA 60.542 50.000 0.00 0.00 41.54 3.18
1858 2015 1.999048 ACGTGTCGTCTGTTGTCAAA 58.001 45.000 0.00 0.00 33.69 2.69
1868 2026 1.388547 TGTTGTCAAACAGTCAGGGC 58.611 50.000 0.00 0.00 41.41 5.19
1882 2040 3.057315 AGTCAGGGCGAAAATGTGAATTG 60.057 43.478 0.00 0.00 0.00 2.32
1891 2049 4.320421 CGAAAATGTGAATTGAGGACTGCA 60.320 41.667 0.00 0.00 0.00 4.41
1906 2064 0.461548 CTGCAGACCCTCTCGCAATA 59.538 55.000 8.42 0.00 32.90 1.90
1925 2083 0.591170 AGTTTGAATTGCACGGTCCG 59.409 50.000 10.48 10.48 0.00 4.79
1926 2084 0.386731 GTTTGAATTGCACGGTCCGG 60.387 55.000 17.28 5.79 0.00 5.14
1929 2087 1.669760 GAATTGCACGGTCCGGACA 60.670 57.895 34.40 14.72 0.00 4.02
1935 2093 1.158434 GCACGGTCCGGACAATTTTA 58.842 50.000 34.40 0.00 0.00 1.52
1941 2099 3.617284 GGTCCGGACAATTTTACCATCT 58.383 45.455 34.40 0.00 0.00 2.90
1943 2101 5.187687 GGTCCGGACAATTTTACCATCTAA 58.812 41.667 34.40 0.00 0.00 2.10
1944 2102 5.065602 GGTCCGGACAATTTTACCATCTAAC 59.934 44.000 34.40 8.28 0.00 2.34
1946 2104 4.495184 CCGGACAATTTTACCATCTAACGC 60.495 45.833 0.00 0.00 0.00 4.84
1947 2105 4.584394 GGACAATTTTACCATCTAACGCG 58.416 43.478 3.53 3.53 0.00 6.01
1948 2106 4.330620 GGACAATTTTACCATCTAACGCGA 59.669 41.667 15.93 0.00 0.00 5.87
1949 2107 5.007332 GGACAATTTTACCATCTAACGCGAT 59.993 40.000 15.93 2.34 0.00 4.58
1951 2109 5.583061 ACAATTTTACCATCTAACGCGATCA 59.417 36.000 15.93 0.00 0.00 2.92
1970 2128 2.109463 CATGTATCGGTTCACTCGACG 58.891 52.381 0.00 0.00 39.55 5.12
1986 2144 2.033299 TCGACGGACGTCACTTTTAAGT 59.967 45.455 22.60 3.62 44.77 2.24
1992 2150 3.999001 GGACGTCACTTTTAAGTAAGGGG 59.001 47.826 18.91 0.00 37.08 4.79
2011 2169 3.555966 GGGGGACTTTATGGATGTTCAG 58.444 50.000 0.00 0.00 0.00 3.02
2014 2172 4.080299 GGGGACTTTATGGATGTTCAGACT 60.080 45.833 0.00 0.00 0.00 3.24
2028 2186 3.730761 GACTGCTGCCACGCAAGG 61.731 66.667 0.00 0.00 46.39 3.61
2045 2203 4.717313 GGTCTGACAACCCCGGCC 62.717 72.222 10.38 0.00 32.82 6.13
2060 2218 1.606601 GGCCCACCCAAAACCTCTC 60.607 63.158 0.00 0.00 0.00 3.20
2062 2220 1.850549 CCCACCCAAAACCTCTCCA 59.149 57.895 0.00 0.00 0.00 3.86
2064 2222 1.203174 CCCACCCAAAACCTCTCCATT 60.203 52.381 0.00 0.00 0.00 3.16
2070 2228 3.763897 CCCAAAACCTCTCCATTTACCTG 59.236 47.826 0.00 0.00 0.00 4.00
2071 2229 3.193479 CCAAAACCTCTCCATTTACCTGC 59.807 47.826 0.00 0.00 0.00 4.85
2072 2230 4.082125 CAAAACCTCTCCATTTACCTGCT 58.918 43.478 0.00 0.00 0.00 4.24
2099 2258 1.675310 CCCAAAGCGATCAGTGCCA 60.675 57.895 0.00 0.00 0.00 4.92
2109 2268 2.022195 GATCAGTGCCACATTCATGCT 58.978 47.619 0.00 0.00 0.00 3.79
2110 2269 2.785540 TCAGTGCCACATTCATGCTA 57.214 45.000 0.00 0.00 0.00 3.49
2142 2301 3.290776 GTGACCTCTCACGTTGCTT 57.709 52.632 0.00 0.00 37.67 3.91
2182 2341 0.960364 GGCCGACTGCTCCATTCAAA 60.960 55.000 0.00 0.00 40.92 2.69
2183 2342 0.169009 GCCGACTGCTCCATTCAAAC 59.831 55.000 0.00 0.00 36.87 2.93
2184 2343 1.522668 CCGACTGCTCCATTCAAACA 58.477 50.000 0.00 0.00 0.00 2.83
2189 2348 0.313672 TGCTCCATTCAAACAACGGC 59.686 50.000 0.00 0.00 0.00 5.68
2192 2351 2.080062 CCATTCAAACAACGGCGCG 61.080 57.895 6.90 0.00 0.00 6.86
2222 2382 0.322187 GCCCACATTAACCACCTCGT 60.322 55.000 0.00 0.00 0.00 4.18
2231 2391 2.315720 AACCACCTCGTTACCTACCT 57.684 50.000 0.00 0.00 0.00 3.08
2232 2392 3.456380 AACCACCTCGTTACCTACCTA 57.544 47.619 0.00 0.00 0.00 3.08
2238 2398 2.963782 CCTCGTTACCTACCTAGCCATT 59.036 50.000 0.00 0.00 0.00 3.16
2254 2464 2.216898 CCATTCGCTTCCAATCTCCTC 58.783 52.381 0.00 0.00 0.00 3.71
2257 2467 1.852633 TCGCTTCCAATCTCCTCTCA 58.147 50.000 0.00 0.00 0.00 3.27
2258 2468 1.753649 TCGCTTCCAATCTCCTCTCAG 59.246 52.381 0.00 0.00 0.00 3.35
2269 2479 0.037734 TCCTCTCAGCACCACGACTA 59.962 55.000 0.00 0.00 0.00 2.59
2308 2518 2.003301 CTAAAGCCTTCTCGAACAGCC 58.997 52.381 0.00 0.00 0.00 4.85
2312 2522 0.036858 GCCTTCTCGAACAGCCTCTT 60.037 55.000 0.00 0.00 0.00 2.85
2338 2548 2.744202 GAGCAGAAAAAGAAGATCGCCA 59.256 45.455 0.00 0.00 0.00 5.69
2344 2554 3.855689 AAAAGAAGATCGCCACCATTG 57.144 42.857 0.00 0.00 0.00 2.82
2348 2558 1.660560 AAGATCGCCACCATTGCAGC 61.661 55.000 0.00 0.00 0.00 5.25
2351 2561 4.124351 CGCCACCATTGCAGCCTG 62.124 66.667 0.00 0.00 0.00 4.85
2372 2582 4.504132 GCAGGATGACAGACGGAC 57.496 61.111 0.00 0.00 39.69 4.79
2396 2606 2.271800 CTCATCGGAGGTTAGTGTTGC 58.728 52.381 0.00 0.00 37.51 4.17
2405 2615 0.602905 GTTAGTGTTGCAGACGCCCT 60.603 55.000 8.37 1.96 39.64 5.19
2418 2628 4.464262 GCCCTAATGGAAGAGGCG 57.536 61.111 0.00 0.00 35.39 5.52
2421 2631 0.106894 CCCTAATGGAAGAGGCGGTC 59.893 60.000 0.00 0.00 35.39 4.79
2422 2632 0.830648 CCTAATGGAAGAGGCGGTCA 59.169 55.000 0.00 0.00 34.57 4.02
2447 2657 0.745845 CAGGCGCTAAGGTCATTGCT 60.746 55.000 7.64 0.00 0.00 3.91
2456 2666 1.180029 AGGTCATTGCTGGTTGATGC 58.820 50.000 0.00 0.00 0.00 3.91
2457 2667 1.180029 GGTCATTGCTGGTTGATGCT 58.820 50.000 0.00 0.00 0.00 3.79
2458 2668 1.135199 GGTCATTGCTGGTTGATGCTG 60.135 52.381 0.00 0.00 0.00 4.41
2459 2669 1.135199 GTCATTGCTGGTTGATGCTGG 60.135 52.381 0.00 0.00 0.00 4.85
2460 2670 0.892755 CATTGCTGGTTGATGCTGGT 59.107 50.000 0.00 0.00 0.00 4.00
2461 2671 0.892755 ATTGCTGGTTGATGCTGGTG 59.107 50.000 0.00 0.00 0.00 4.17
2462 2672 0.467844 TTGCTGGTTGATGCTGGTGT 60.468 50.000 0.00 0.00 0.00 4.16
2463 2673 1.174078 TGCTGGTTGATGCTGGTGTG 61.174 55.000 0.00 0.00 0.00 3.82
2464 2674 0.890542 GCTGGTTGATGCTGGTGTGA 60.891 55.000 0.00 0.00 0.00 3.58
2465 2675 0.877071 CTGGTTGATGCTGGTGTGAC 59.123 55.000 0.00 0.00 0.00 3.67
2466 2676 0.884259 TGGTTGATGCTGGTGTGACG 60.884 55.000 0.00 0.00 0.00 4.35
2467 2677 1.207593 GTTGATGCTGGTGTGACGC 59.792 57.895 0.00 0.00 0.00 5.19
2468 2678 1.071299 TTGATGCTGGTGTGACGCT 59.929 52.632 0.00 0.00 0.00 5.07
2469 2679 0.950555 TTGATGCTGGTGTGACGCTC 60.951 55.000 0.00 0.00 0.00 5.03
2470 2680 2.046892 ATGCTGGTGTGACGCTCC 60.047 61.111 0.00 0.00 0.00 4.70
2471 2681 3.612247 ATGCTGGTGTGACGCTCCC 62.612 63.158 4.72 0.00 0.00 4.30
2473 2683 3.680786 CTGGTGTGACGCTCCCGA 61.681 66.667 4.72 0.00 38.29 5.14
2474 2684 2.994995 TGGTGTGACGCTCCCGAT 60.995 61.111 4.72 0.00 38.29 4.18
2475 2685 2.264794 GGTGTGACGCTCCCGATT 59.735 61.111 0.00 0.00 38.29 3.34
2476 2686 1.375523 GGTGTGACGCTCCCGATTT 60.376 57.895 0.00 0.00 38.29 2.17
2477 2687 1.635663 GGTGTGACGCTCCCGATTTG 61.636 60.000 0.00 0.00 38.29 2.32
2478 2688 0.669318 GTGTGACGCTCCCGATTTGA 60.669 55.000 0.00 0.00 38.29 2.69
2479 2689 0.669318 TGTGACGCTCCCGATTTGAC 60.669 55.000 0.00 0.00 38.29 3.18
2480 2690 1.079405 TGACGCTCCCGATTTGACC 60.079 57.895 0.00 0.00 38.29 4.02
2481 2691 2.125673 ACGCTCCCGATTTGACCG 60.126 61.111 0.00 0.00 38.29 4.79
2482 2692 2.125673 CGCTCCCGATTTGACCGT 60.126 61.111 0.00 0.00 36.29 4.83
2483 2693 1.140161 CGCTCCCGATTTGACCGTA 59.860 57.895 0.00 0.00 36.29 4.02
2484 2694 1.143969 CGCTCCCGATTTGACCGTAC 61.144 60.000 0.00 0.00 36.29 3.67
2485 2695 0.108520 GCTCCCGATTTGACCGTACA 60.109 55.000 0.00 0.00 0.00 2.90
2486 2696 1.636988 CTCCCGATTTGACCGTACAC 58.363 55.000 0.00 0.00 0.00 2.90
2487 2697 1.203994 CTCCCGATTTGACCGTACACT 59.796 52.381 0.00 0.00 0.00 3.55
2488 2698 2.424601 CTCCCGATTTGACCGTACACTA 59.575 50.000 0.00 0.00 0.00 2.74
2489 2699 2.824936 TCCCGATTTGACCGTACACTAA 59.175 45.455 0.00 0.00 0.00 2.24
2490 2700 3.448301 TCCCGATTTGACCGTACACTAAT 59.552 43.478 0.00 0.00 0.00 1.73
2491 2701 3.800506 CCCGATTTGACCGTACACTAATC 59.199 47.826 0.00 2.04 0.00 1.75
2492 2702 4.426416 CCGATTTGACCGTACACTAATCA 58.574 43.478 13.93 0.90 32.03 2.57
2493 2703 5.047847 CCGATTTGACCGTACACTAATCAT 58.952 41.667 13.93 0.00 32.03 2.45
2494 2704 6.210796 CCGATTTGACCGTACACTAATCATA 58.789 40.000 13.93 0.23 32.03 2.15
2495 2705 6.143438 CCGATTTGACCGTACACTAATCATAC 59.857 42.308 13.93 0.00 32.03 2.39
2496 2706 6.693978 CGATTTGACCGTACACTAATCATACA 59.306 38.462 13.93 0.00 32.03 2.29
2497 2707 7.305820 CGATTTGACCGTACACTAATCATACAC 60.306 40.741 13.93 0.00 32.03 2.90
2498 2708 4.912214 TGACCGTACACTAATCATACACG 58.088 43.478 0.00 0.00 0.00 4.49
2499 2709 3.699067 ACCGTACACTAATCATACACGC 58.301 45.455 0.00 0.00 0.00 5.34
2500 2710 3.129113 ACCGTACACTAATCATACACGCA 59.871 43.478 0.00 0.00 0.00 5.24
2501 2711 4.106909 CCGTACACTAATCATACACGCAA 58.893 43.478 0.00 0.00 0.00 4.85
2502 2712 4.563580 CCGTACACTAATCATACACGCAAA 59.436 41.667 0.00 0.00 0.00 3.68
2503 2713 5.478001 CGTACACTAATCATACACGCAAAC 58.522 41.667 0.00 0.00 0.00 2.93
2516 2726 2.125168 CGCAAACGTGTACGATCAAG 57.875 50.000 11.79 0.00 43.02 3.02
2517 2727 1.717113 CGCAAACGTGTACGATCAAGA 59.283 47.619 11.79 0.00 43.02 3.02
2518 2728 2.344441 CGCAAACGTGTACGATCAAGAT 59.656 45.455 11.79 0.00 43.02 2.40
2519 2729 3.539592 CGCAAACGTGTACGATCAAGATC 60.540 47.826 11.79 0.00 43.02 2.75
2520 2730 3.366724 GCAAACGTGTACGATCAAGATCA 59.633 43.478 11.79 0.00 43.02 2.92
2521 2731 4.490959 GCAAACGTGTACGATCAAGATCAG 60.491 45.833 11.79 5.82 43.02 2.90
2522 2732 3.422417 ACGTGTACGATCAAGATCAGG 57.578 47.619 11.79 0.51 43.02 3.86
2523 2733 2.099263 ACGTGTACGATCAAGATCAGGG 59.901 50.000 11.79 0.00 43.02 4.45
2524 2734 2.357952 CGTGTACGATCAAGATCAGGGA 59.642 50.000 10.39 0.00 43.02 4.20
2525 2735 3.707793 GTGTACGATCAAGATCAGGGAC 58.292 50.000 10.39 2.84 37.69 4.46
2526 2736 3.381908 GTGTACGATCAAGATCAGGGACT 59.618 47.826 10.39 0.00 43.88 3.85
2527 2737 3.632604 TGTACGATCAAGATCAGGGACTC 59.367 47.826 10.39 0.00 34.60 3.36
2528 2738 2.739943 ACGATCAAGATCAGGGACTCA 58.260 47.619 10.39 0.00 34.60 3.41
2529 2739 2.428890 ACGATCAAGATCAGGGACTCAC 59.571 50.000 10.39 0.00 34.60 3.51
2530 2740 2.542618 CGATCAAGATCAGGGACTCACG 60.543 54.545 10.39 0.00 34.60 4.35
2531 2741 1.186200 TCAAGATCAGGGACTCACGG 58.814 55.000 0.00 0.00 34.60 4.94
2532 2742 1.186200 CAAGATCAGGGACTCACGGA 58.814 55.000 0.00 0.00 34.60 4.69
2533 2743 1.550524 CAAGATCAGGGACTCACGGAA 59.449 52.381 0.00 0.00 34.60 4.30
2534 2744 1.938585 AGATCAGGGACTCACGGAAA 58.061 50.000 0.00 0.00 34.60 3.13
2535 2745 1.827969 AGATCAGGGACTCACGGAAAG 59.172 52.381 0.00 0.00 34.60 2.62
2536 2746 1.825474 GATCAGGGACTCACGGAAAGA 59.175 52.381 0.00 0.00 34.60 2.52
2537 2747 1.938585 TCAGGGACTCACGGAAAGAT 58.061 50.000 0.00 0.00 34.60 2.40
2538 2748 3.095912 TCAGGGACTCACGGAAAGATA 57.904 47.619 0.00 0.00 34.60 1.98
2539 2749 3.643237 TCAGGGACTCACGGAAAGATAT 58.357 45.455 0.00 0.00 34.60 1.63
2540 2750 3.637229 TCAGGGACTCACGGAAAGATATC 59.363 47.826 0.00 0.00 34.60 1.63
2541 2751 3.384789 CAGGGACTCACGGAAAGATATCA 59.615 47.826 5.32 0.00 34.60 2.15
2542 2752 3.385111 AGGGACTCACGGAAAGATATCAC 59.615 47.826 5.32 0.00 0.00 3.06
2543 2753 3.132289 GGGACTCACGGAAAGATATCACA 59.868 47.826 5.32 0.00 0.00 3.58
2544 2754 4.382685 GGGACTCACGGAAAGATATCACAA 60.383 45.833 5.32 0.00 0.00 3.33
2545 2755 4.567159 GGACTCACGGAAAGATATCACAAC 59.433 45.833 5.32 0.00 0.00 3.32
2546 2756 5.147330 ACTCACGGAAAGATATCACAACA 57.853 39.130 5.32 0.00 0.00 3.33
2547 2757 4.929808 ACTCACGGAAAGATATCACAACAC 59.070 41.667 5.32 0.00 0.00 3.32
2548 2758 4.888917 TCACGGAAAGATATCACAACACA 58.111 39.130 5.32 0.00 0.00 3.72
2549 2759 5.301555 TCACGGAAAGATATCACAACACAA 58.698 37.500 5.32 0.00 0.00 3.33
2550 2760 5.178623 TCACGGAAAGATATCACAACACAAC 59.821 40.000 5.32 0.00 0.00 3.32
2551 2761 5.179368 CACGGAAAGATATCACAACACAACT 59.821 40.000 5.32 0.00 0.00 3.16
2552 2762 5.408604 ACGGAAAGATATCACAACACAACTC 59.591 40.000 5.32 0.00 0.00 3.01
2553 2763 5.639506 CGGAAAGATATCACAACACAACTCT 59.360 40.000 5.32 0.00 0.00 3.24
2554 2764 6.811665 CGGAAAGATATCACAACACAACTCTA 59.188 38.462 5.32 0.00 0.00 2.43
2555 2765 7.201444 CGGAAAGATATCACAACACAACTCTAC 60.201 40.741 5.32 0.00 0.00 2.59
2556 2766 7.602644 GGAAAGATATCACAACACAACTCTACA 59.397 37.037 5.32 0.00 0.00 2.74
2557 2767 8.902540 AAAGATATCACAACACAACTCTACAA 57.097 30.769 5.32 0.00 0.00 2.41
2558 2768 8.902540 AAGATATCACAACACAACTCTACAAA 57.097 30.769 5.32 0.00 0.00 2.83
2559 2769 9.507329 AAGATATCACAACACAACTCTACAAAT 57.493 29.630 5.32 0.00 0.00 2.32
2592 2802 9.394767 AGTCATACAAACATCATATTACAAGCA 57.605 29.630 0.00 0.00 0.00 3.91
2593 2803 9.655769 GTCATACAAACATCATATTACAAGCAG 57.344 33.333 0.00 0.00 0.00 4.24
2594 2804 8.839343 TCATACAAACATCATATTACAAGCAGG 58.161 33.333 0.00 0.00 0.00 4.85
2595 2805 8.839343 CATACAAACATCATATTACAAGCAGGA 58.161 33.333 0.00 0.00 0.00 3.86
2596 2806 7.325660 ACAAACATCATATTACAAGCAGGAG 57.674 36.000 0.00 0.00 0.00 3.69
2597 2807 6.183360 ACAAACATCATATTACAAGCAGGAGC 60.183 38.462 0.00 0.00 42.56 4.70
2598 2808 4.392940 ACATCATATTACAAGCAGGAGCC 58.607 43.478 0.00 0.00 43.56 4.70
2599 2809 4.103785 ACATCATATTACAAGCAGGAGCCT 59.896 41.667 0.00 0.00 43.56 4.58
2600 2810 4.342862 TCATATTACAAGCAGGAGCCTC 57.657 45.455 0.00 0.00 43.56 4.70
2601 2811 2.890808 TATTACAAGCAGGAGCCTCG 57.109 50.000 0.00 0.00 43.56 4.63
2602 2812 1.195115 ATTACAAGCAGGAGCCTCGA 58.805 50.000 0.00 0.00 43.56 4.04
2603 2813 0.532573 TTACAAGCAGGAGCCTCGAG 59.467 55.000 5.13 5.13 43.56 4.04
2604 2814 1.323271 TACAAGCAGGAGCCTCGAGG 61.323 60.000 27.83 27.83 43.56 4.63
2605 2815 3.080121 AAGCAGGAGCCTCGAGGG 61.080 66.667 32.06 16.36 43.56 4.30
2625 2835 2.853731 CTCGAATACAAGAGCTCGGT 57.146 50.000 16.53 16.53 32.25 4.69
2626 2836 3.152261 CTCGAATACAAGAGCTCGGTT 57.848 47.619 17.33 0.94 32.25 4.44
2627 2837 4.288670 CTCGAATACAAGAGCTCGGTTA 57.711 45.455 17.33 6.55 32.25 2.85
2628 2838 4.861210 CTCGAATACAAGAGCTCGGTTAT 58.139 43.478 17.33 8.41 32.25 1.89
2629 2839 5.998553 CTCGAATACAAGAGCTCGGTTATA 58.001 41.667 17.33 4.43 32.25 0.98
2630 2840 5.998553 TCGAATACAAGAGCTCGGTTATAG 58.001 41.667 17.33 8.83 32.25 1.31
2631 2841 5.761726 TCGAATACAAGAGCTCGGTTATAGA 59.238 40.000 17.33 10.53 32.25 1.98
2632 2842 6.430308 TCGAATACAAGAGCTCGGTTATAGAT 59.570 38.462 17.33 4.23 32.25 1.98
2633 2843 6.524933 CGAATACAAGAGCTCGGTTATAGATG 59.475 42.308 17.33 5.90 0.00 2.90
2634 2844 7.526142 AATACAAGAGCTCGGTTATAGATGA 57.474 36.000 17.33 0.28 0.00 2.92
2635 2845 5.446143 ACAAGAGCTCGGTTATAGATGAG 57.554 43.478 8.37 0.00 0.00 2.90
2636 2846 4.890581 ACAAGAGCTCGGTTATAGATGAGT 59.109 41.667 8.37 0.00 0.00 3.41
2637 2847 5.009210 ACAAGAGCTCGGTTATAGATGAGTC 59.991 44.000 8.37 0.00 0.00 3.36
2638 2848 4.720046 AGAGCTCGGTTATAGATGAGTCA 58.280 43.478 8.37 0.00 0.00 3.41
2639 2849 4.759693 AGAGCTCGGTTATAGATGAGTCAG 59.240 45.833 8.37 0.00 0.00 3.51
2640 2850 3.254657 AGCTCGGTTATAGATGAGTCAGC 59.745 47.826 0.00 0.00 0.00 4.26
2641 2851 3.816091 CTCGGTTATAGATGAGTCAGCG 58.184 50.000 2.10 0.00 0.00 5.18
2642 2852 2.552743 TCGGTTATAGATGAGTCAGCGG 59.447 50.000 2.10 0.00 0.00 5.52
2643 2853 2.552743 CGGTTATAGATGAGTCAGCGGA 59.447 50.000 2.10 0.00 0.00 5.54
2644 2854 3.004419 CGGTTATAGATGAGTCAGCGGAA 59.996 47.826 2.10 0.00 0.00 4.30
2645 2855 4.551388 GGTTATAGATGAGTCAGCGGAAG 58.449 47.826 2.10 0.00 0.00 3.46
2666 2876 9.130312 CGGAAGCAACAATATCTAAGTATAGAC 57.870 37.037 0.00 0.00 40.88 2.59
2667 2877 9.982651 GGAAGCAACAATATCTAAGTATAGACA 57.017 33.333 0.00 0.00 40.88 3.41
2695 2905 8.587952 AGTTAAACAAGTTGTCATAAAATGGC 57.412 30.769 9.40 1.13 34.88 4.40
2696 2906 8.421002 AGTTAAACAAGTTGTCATAAAATGGCT 58.579 29.630 9.40 3.17 35.48 4.75
2697 2907 9.685828 GTTAAACAAGTTGTCATAAAATGGCTA 57.314 29.630 9.40 0.00 35.48 3.93
2698 2908 9.906660 TTAAACAAGTTGTCATAAAATGGCTAG 57.093 29.630 9.40 0.00 35.48 3.42
2699 2909 5.954335 ACAAGTTGTCATAAAATGGCTAGC 58.046 37.500 6.04 6.04 35.48 3.42
2700 2910 5.476599 ACAAGTTGTCATAAAATGGCTAGCA 59.523 36.000 18.24 2.97 35.48 3.49
2701 2911 5.567138 AGTTGTCATAAAATGGCTAGCAC 57.433 39.130 18.24 6.66 35.48 4.40
2702 2912 5.009631 AGTTGTCATAAAATGGCTAGCACA 58.990 37.500 18.24 12.55 35.48 4.57
2703 2913 5.476599 AGTTGTCATAAAATGGCTAGCACAA 59.523 36.000 18.24 11.82 35.48 3.33
2704 2914 5.973899 TGTCATAAAATGGCTAGCACAAA 57.026 34.783 18.24 0.00 35.48 2.83
2705 2915 5.708948 TGTCATAAAATGGCTAGCACAAAC 58.291 37.500 18.24 0.00 35.48 2.93
2706 2916 5.476599 TGTCATAAAATGGCTAGCACAAACT 59.523 36.000 18.24 0.00 35.48 2.66
2707 2917 5.801947 GTCATAAAATGGCTAGCACAAACTG 59.198 40.000 18.24 5.59 30.66 3.16
2708 2918 3.665745 AAAATGGCTAGCACAAACTGG 57.334 42.857 18.24 0.00 0.00 4.00
2709 2919 1.549203 AATGGCTAGCACAAACTGGG 58.451 50.000 18.24 0.00 0.00 4.45
2710 2920 0.698238 ATGGCTAGCACAAACTGGGA 59.302 50.000 18.24 0.00 0.00 4.37
2711 2921 0.698238 TGGCTAGCACAAACTGGGAT 59.302 50.000 18.24 0.00 0.00 3.85
2712 2922 1.912731 TGGCTAGCACAAACTGGGATA 59.087 47.619 18.24 0.00 0.00 2.59
2713 2923 2.289565 GGCTAGCACAAACTGGGATAC 58.710 52.381 18.24 0.00 0.00 2.24
2714 2924 2.355716 GGCTAGCACAAACTGGGATACA 60.356 50.000 18.24 0.00 39.74 2.29
2715 2925 3.545703 GCTAGCACAAACTGGGATACAT 58.454 45.455 10.63 0.00 39.74 2.29
2716 2926 4.444306 GGCTAGCACAAACTGGGATACATA 60.444 45.833 18.24 0.00 39.74 2.29
2717 2927 5.308825 GCTAGCACAAACTGGGATACATAT 58.691 41.667 10.63 0.00 39.74 1.78
2718 2928 5.409826 GCTAGCACAAACTGGGATACATATC 59.590 44.000 10.63 0.00 39.74 1.63
2719 2929 4.380531 AGCACAAACTGGGATACATATCG 58.619 43.478 0.00 0.00 39.74 2.92
2720 2930 4.100963 AGCACAAACTGGGATACATATCGA 59.899 41.667 0.00 0.00 39.74 3.59
2721 2931 4.814234 GCACAAACTGGGATACATATCGAA 59.186 41.667 0.00 0.00 39.74 3.71
2722 2932 5.295787 GCACAAACTGGGATACATATCGAAA 59.704 40.000 0.00 0.00 39.74 3.46
2723 2933 6.511767 GCACAAACTGGGATACATATCGAAAG 60.512 42.308 0.00 0.00 39.74 2.62
2724 2934 6.761242 CACAAACTGGGATACATATCGAAAGA 59.239 38.462 0.00 0.00 42.73 2.52
2725 2935 6.986817 ACAAACTGGGATACATATCGAAAGAG 59.013 38.462 0.00 0.00 41.83 2.85
2726 2936 5.730296 ACTGGGATACATATCGAAAGAGG 57.270 43.478 0.00 0.00 41.83 3.69
2727 2937 5.148502 ACTGGGATACATATCGAAAGAGGT 58.851 41.667 0.00 0.00 41.83 3.85
2728 2938 5.011125 ACTGGGATACATATCGAAAGAGGTG 59.989 44.000 0.00 0.00 41.83 4.00
2729 2939 4.246458 GGGATACATATCGAAAGAGGTGC 58.754 47.826 0.00 0.00 41.83 5.01
2730 2940 5.146184 GGGATACATATCGAAAGAGGTGCG 61.146 50.000 0.00 0.00 41.83 5.34
2734 2944 4.388499 TCGAAAGAGGTGCGGGCC 62.388 66.667 0.00 0.00 34.84 5.80
2735 2945 4.394712 CGAAAGAGGTGCGGGCCT 62.395 66.667 0.84 0.00 42.53 5.19
2749 2959 3.883549 GCCTCCTGCCTGGGATCC 61.884 72.222 1.92 1.92 34.56 3.36
2750 2960 2.040043 CCTCCTGCCTGGGATCCT 60.040 66.667 12.58 0.00 34.56 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 7.946207 TCTCACCAATGTGTTTGCTTAATAAA 58.054 30.769 0.00 0.00 43.26 1.40
61 62 3.137533 GCAGCCCATTAACTTTTGCAAA 58.862 40.909 8.05 8.05 0.00 3.68
78 79 1.457346 GGCATAGGATACATGGCAGC 58.543 55.000 0.00 0.00 45.57 5.25
112 113 3.474798 TCCTTGATGGTGTCTCCTACT 57.525 47.619 0.00 0.00 37.07 2.57
168 174 5.136828 CAAACTAGGCCATAGAGAGAGAGA 58.863 45.833 5.01 0.00 35.30 3.10
169 175 4.892934 ACAAACTAGGCCATAGAGAGAGAG 59.107 45.833 5.01 0.00 35.30 3.20
185 191 3.758425 GTGGGGCTTTTCCTACAAACTA 58.242 45.455 0.00 0.00 38.07 2.24
186 192 2.594131 GTGGGGCTTTTCCTACAAACT 58.406 47.619 0.00 0.00 38.07 2.66
187 193 1.268625 CGTGGGGCTTTTCCTACAAAC 59.731 52.381 0.00 0.00 38.06 2.93
211 217 2.869801 TGGAAGTAAGACACAAGCAACG 59.130 45.455 0.00 0.00 0.00 4.10
230 237 7.415206 CGTCTATTTCTTACCAAAAGGGAATGG 60.415 40.741 0.00 0.00 42.60 3.16
242 249 7.333672 ACATTTCTTGTCCGTCTATTTCTTACC 59.666 37.037 0.00 0.00 30.89 2.85
314 321 9.482627 AGACTCGAAAAATAGGTGATGATAATC 57.517 33.333 0.00 0.00 0.00 1.75
357 364 5.560148 GTGTATACACAAAGAAATGCTCCG 58.440 41.667 27.37 0.00 45.75 4.63
383 390 8.187913 AGTATGAGACAGAATACTATGCATGT 57.812 34.615 10.16 8.18 37.74 3.21
429 436 6.639632 TTTCCTTTCTTGTGATTTGAGGAG 57.360 37.500 0.00 0.00 33.73 3.69
499 506 2.202046 GCGTTGCATGTGACGACG 60.202 61.111 21.61 14.68 45.65 5.12
516 523 5.215903 GTGTGTAGTGTATCCATCTCATCG 58.784 45.833 0.00 0.00 0.00 3.84
533 540 4.265904 AGTTTCATCATCGGTGTGTGTA 57.734 40.909 0.00 0.00 0.00 2.90
534 541 3.126001 AGTTTCATCATCGGTGTGTGT 57.874 42.857 0.00 0.00 0.00 3.72
535 542 3.365264 CCAAGTTTCATCATCGGTGTGTG 60.365 47.826 0.00 0.00 0.00 3.82
536 543 2.813754 CCAAGTTTCATCATCGGTGTGT 59.186 45.455 0.00 0.00 0.00 3.72
537 544 3.073678 TCCAAGTTTCATCATCGGTGTG 58.926 45.455 0.00 0.00 0.00 3.82
578 585 1.825090 CAGCAAGCAATGGACCTGTA 58.175 50.000 0.00 0.00 0.00 2.74
579 586 1.530013 GCAGCAAGCAATGGACCTGT 61.530 55.000 0.00 0.00 44.79 4.00
580 587 1.214589 GCAGCAAGCAATGGACCTG 59.785 57.895 0.00 0.00 44.79 4.00
639 646 2.379005 CCATAGTGGCCCTTTCCTTTC 58.621 52.381 0.00 0.00 0.00 2.62
738 751 3.930634 AAAGCCAAAGAGATCACTTGC 57.069 42.857 6.14 6.63 0.00 4.01
744 757 2.420372 GTCGGGAAAAGCCAAAGAGATC 59.580 50.000 0.00 0.00 38.95 2.75
745 758 2.437413 GTCGGGAAAAGCCAAAGAGAT 58.563 47.619 0.00 0.00 38.95 2.75
746 759 1.876416 CGTCGGGAAAAGCCAAAGAGA 60.876 52.381 0.00 0.00 38.95 3.10
747 760 0.517316 CGTCGGGAAAAGCCAAAGAG 59.483 55.000 0.00 0.00 38.95 2.85
749 762 1.170290 ACCGTCGGGAAAAGCCAAAG 61.170 55.000 17.28 0.00 38.95 2.77
750 763 1.152922 ACCGTCGGGAAAAGCCAAA 60.153 52.632 17.28 0.00 38.95 3.28
751 764 1.598685 GACCGTCGGGAAAAGCCAA 60.599 57.895 17.28 0.00 38.95 4.52
770 783 5.649831 GGTATTTCAGAGAAATGGCACTTCT 59.350 40.000 11.49 11.49 35.82 2.85
823 836 8.312564 GCTCTTATATTAGTTTACGGAGGGAAT 58.687 37.037 0.00 0.00 0.00 3.01
824 837 7.522725 CGCTCTTATATTAGTTTACGGAGGGAA 60.523 40.741 0.00 0.00 34.63 3.97
825 838 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
826 839 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
827 840 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
828 841 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
829 842 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
830 843 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
889 902 9.720769 CTTTTGGATTTACTCCTCTGTAAACTA 57.279 33.333 0.00 0.00 45.21 2.24
890 903 8.218488 ACTTTTGGATTTACTCCTCTGTAAACT 58.782 33.333 0.00 0.00 45.21 2.66
891 904 8.392372 ACTTTTGGATTTACTCCTCTGTAAAC 57.608 34.615 0.00 0.00 45.21 2.01
892 905 9.498176 GTACTTTTGGATTTACTCCTCTGTAAA 57.502 33.333 0.00 0.00 45.21 2.01
893 906 8.653191 TGTACTTTTGGATTTACTCCTCTGTAA 58.347 33.333 0.00 0.00 45.21 2.41
894 907 8.092687 GTGTACTTTTGGATTTACTCCTCTGTA 58.907 37.037 0.00 0.00 45.21 2.74
895 908 6.935208 GTGTACTTTTGGATTTACTCCTCTGT 59.065 38.462 0.00 0.00 45.21 3.41
896 909 6.934645 TGTGTACTTTTGGATTTACTCCTCTG 59.065 38.462 0.00 0.00 45.21 3.35
897 910 7.074653 TGTGTACTTTTGGATTTACTCCTCT 57.925 36.000 0.00 0.00 45.21 3.69
898 911 7.148239 CCATGTGTACTTTTGGATTTACTCCTC 60.148 40.741 0.00 0.00 45.21 3.71
899 912 6.659242 CCATGTGTACTTTTGGATTTACTCCT 59.341 38.462 0.00 0.00 45.21 3.69
900 913 6.433093 ACCATGTGTACTTTTGGATTTACTCC 59.567 38.462 13.28 0.00 45.19 3.85
901 914 7.448748 ACCATGTGTACTTTTGGATTTACTC 57.551 36.000 13.28 0.00 33.36 2.59
902 915 7.833285 AACCATGTGTACTTTTGGATTTACT 57.167 32.000 13.28 0.00 33.36 2.24
924 937 4.447724 TGTTCTTCACGCTCATACTGAAAC 59.552 41.667 0.00 0.00 0.00 2.78
926 939 3.987868 GTGTTCTTCACGCTCATACTGAA 59.012 43.478 0.00 0.00 37.31 3.02
938 951 4.800993 CGAGTATCATGGAGTGTTCTTCAC 59.199 45.833 0.00 0.00 40.45 3.18
966 979 1.463444 GTATTTGACCACCACGCTCAC 59.537 52.381 0.00 0.00 0.00 3.51
1040 1059 2.606725 GTGTCGAAGATGGCAGATGAAG 59.393 50.000 0.00 0.00 40.67 3.02
1080 1099 0.255318 AGGAAGCCATTGCCTGAGAG 59.745 55.000 0.00 0.00 38.69 3.20
1107 1126 1.883275 CCCATCACGCTACTAGAGGAG 59.117 57.143 0.00 0.00 0.00 3.69
1276 1325 3.766691 GTCTTGGTAGCCGCCGGA 61.767 66.667 7.68 0.00 0.00 5.14
1779 1932 4.081697 TCACAGATCACATGACACGGTTAT 60.082 41.667 0.00 0.00 0.00 1.89
1788 1941 2.167075 ACGCAGATCACAGATCACATGA 59.833 45.455 0.00 0.00 0.00 3.07
1856 2013 2.034558 CACATTTTCGCCCTGACTGTTT 59.965 45.455 0.00 0.00 0.00 2.83
1857 2014 1.608590 CACATTTTCGCCCTGACTGTT 59.391 47.619 0.00 0.00 0.00 3.16
1858 2015 1.202758 TCACATTTTCGCCCTGACTGT 60.203 47.619 0.00 0.00 0.00 3.55
1868 2026 4.161333 GCAGTCCTCAATTCACATTTTCG 58.839 43.478 0.00 0.00 0.00 3.46
1882 2040 1.662438 CGAGAGGGTCTGCAGTCCTC 61.662 65.000 32.33 32.33 45.46 3.71
1891 2049 2.832129 TCAAACTATTGCGAGAGGGTCT 59.168 45.455 0.00 0.00 36.45 3.85
1906 2064 0.591170 CGGACCGTGCAATTCAAACT 59.409 50.000 5.48 0.00 0.00 2.66
1918 2076 1.072015 TGGTAAAATTGTCCGGACCGT 59.928 47.619 31.19 17.10 0.00 4.83
1925 2083 4.330620 TCGCGTTAGATGGTAAAATTGTCC 59.669 41.667 5.77 0.00 0.00 4.02
1926 2084 5.459110 TCGCGTTAGATGGTAAAATTGTC 57.541 39.130 5.77 0.00 0.00 3.18
1929 2087 6.260050 ACATGATCGCGTTAGATGGTAAAATT 59.740 34.615 5.77 0.00 0.00 1.82
1935 2093 2.890808 ACATGATCGCGTTAGATGGT 57.109 45.000 5.77 0.00 0.00 3.55
1947 2105 3.975670 GTCGAGTGAACCGATACATGATC 59.024 47.826 0.00 0.00 38.38 2.92
1948 2106 3.548214 CGTCGAGTGAACCGATACATGAT 60.548 47.826 0.00 0.00 38.38 2.45
1949 2107 2.223180 CGTCGAGTGAACCGATACATGA 60.223 50.000 0.00 0.00 38.38 3.07
1951 2109 1.065102 CCGTCGAGTGAACCGATACAT 59.935 52.381 0.00 0.00 38.38 2.29
1958 2116 1.441682 GACGTCCGTCGAGTGAACC 60.442 63.158 3.51 0.00 42.86 3.62
1970 2128 3.999001 CCCCTTACTTAAAAGTGACGTCC 59.001 47.826 14.12 4.42 40.07 4.79
1992 2150 4.878397 CAGTCTGAACATCCATAAAGTCCC 59.122 45.833 0.00 0.00 0.00 4.46
1997 2155 3.691118 GCAGCAGTCTGAACATCCATAAA 59.309 43.478 3.32 0.00 42.95 1.40
2000 2158 1.681166 GGCAGCAGTCTGAACATCCAT 60.681 52.381 3.32 0.00 42.95 3.41
2004 2162 0.952497 CGTGGCAGCAGTCTGAACAT 60.952 55.000 3.32 0.00 42.95 2.71
2005 2163 1.595109 CGTGGCAGCAGTCTGAACA 60.595 57.895 3.32 0.00 42.95 3.18
2006 2164 2.959357 GCGTGGCAGCAGTCTGAAC 61.959 63.158 3.32 0.00 42.95 3.18
2028 2186 4.717313 GGCCGGGGTTGTCAGACC 62.717 72.222 2.18 0.00 39.04 3.85
2041 2199 2.989253 GAGGTTTTGGGTGGGCCG 60.989 66.667 0.00 0.00 34.97 6.13
2042 2200 1.606601 GAGAGGTTTTGGGTGGGCC 60.607 63.158 0.00 0.00 0.00 5.80
2045 2203 2.309136 AATGGAGAGGTTTTGGGTGG 57.691 50.000 0.00 0.00 0.00 4.61
2060 2218 2.017049 CGGGAAAGAGCAGGTAAATGG 58.983 52.381 0.00 0.00 0.00 3.16
2062 2220 1.682087 GGCGGGAAAGAGCAGGTAAAT 60.682 52.381 0.00 0.00 34.54 1.40
2064 2222 1.298667 GGCGGGAAAGAGCAGGTAA 59.701 57.895 0.00 0.00 34.54 2.85
2070 2228 2.994671 GCTTTGGGCGGGAAAGAGC 61.995 63.158 0.00 0.00 33.01 4.09
2071 2229 3.278157 GCTTTGGGCGGGAAAGAG 58.722 61.111 0.00 0.00 33.01 2.85
2099 2258 1.476471 GCTCTGGGCTAGCATGAATGT 60.476 52.381 18.24 0.00 39.83 2.71
2109 2268 1.381191 TCACATCCGCTCTGGGCTA 60.381 57.895 0.00 0.00 38.76 3.93
2110 2269 2.685017 TCACATCCGCTCTGGGCT 60.685 61.111 0.00 0.00 38.76 5.19
2139 2298 0.523335 CACCGCTTTAATGCCGAAGC 60.523 55.000 7.68 0.00 43.62 3.86
2142 2301 2.745785 CGCACCGCTTTAATGCCGA 61.746 57.895 7.68 0.00 35.91 5.54
2203 2362 0.322187 ACGAGGTGGTTAATGTGGGC 60.322 55.000 0.00 0.00 0.00 5.36
2238 2398 1.753649 CTGAGAGGAGATTGGAAGCGA 59.246 52.381 0.00 0.00 0.00 4.93
2243 2453 1.198713 GGTGCTGAGAGGAGATTGGA 58.801 55.000 0.00 0.00 0.00 3.53
2254 2464 0.532573 ATGGTAGTCGTGGTGCTGAG 59.467 55.000 0.00 0.00 0.00 3.35
2257 2467 1.596934 CCATGGTAGTCGTGGTGCT 59.403 57.895 2.57 0.00 45.36 4.40
2258 2468 4.201951 CCATGGTAGTCGTGGTGC 57.798 61.111 2.57 0.00 45.36 5.01
2269 2479 3.474570 GCTCGAGGAGGCCATGGT 61.475 66.667 15.58 0.00 0.00 3.55
2301 2511 1.016653 GCTCGGACAAGAGGCTGTTC 61.017 60.000 0.00 0.00 38.63 3.18
2302 2512 1.004440 GCTCGGACAAGAGGCTGTT 60.004 57.895 0.00 0.00 38.63 3.16
2308 2518 3.393800 TCTTTTTCTGCTCGGACAAGAG 58.606 45.455 0.00 0.00 41.03 2.85
2312 2522 3.469008 TCTTCTTTTTCTGCTCGGACA 57.531 42.857 0.00 0.00 0.00 4.02
2351 2561 1.812922 CGTCTGTCATCCTGCCAGC 60.813 63.158 0.00 0.00 0.00 4.85
2359 2569 0.248296 GAGCTCGTCCGTCTGTCATC 60.248 60.000 0.00 0.00 0.00 2.92
2361 2571 0.960861 ATGAGCTCGTCCGTCTGTCA 60.961 55.000 9.64 0.00 0.00 3.58
2368 2578 2.329690 CTCCGATGAGCTCGTCCG 59.670 66.667 26.51 20.97 46.18 4.79
2382 2592 1.429463 CGTCTGCAACACTAACCTCC 58.571 55.000 0.00 0.00 0.00 4.30
2387 2597 0.970640 TAGGGCGTCTGCAACACTAA 59.029 50.000 0.00 0.00 45.35 2.24
2396 2606 1.202580 CCTCTTCCATTAGGGCGTCTG 60.203 57.143 0.00 0.00 36.21 3.51
2405 2615 1.404986 CGTTGACCGCCTCTTCCATTA 60.405 52.381 0.00 0.00 0.00 1.90
2429 2639 0.745845 CAGCAATGACCTTAGCGCCT 60.746 55.000 2.29 0.00 0.00 5.52
2435 2645 2.754552 GCATCAACCAGCAATGACCTTA 59.245 45.455 0.00 0.00 0.00 2.69
2442 2652 0.892755 CACCAGCATCAACCAGCAAT 59.107 50.000 0.00 0.00 0.00 3.56
2447 2657 0.884259 CGTCACACCAGCATCAACCA 60.884 55.000 0.00 0.00 0.00 3.67
2456 2666 2.507110 AATCGGGAGCGTCACACCAG 62.507 60.000 0.00 0.00 0.00 4.00
2457 2667 2.107041 AAATCGGGAGCGTCACACCA 62.107 55.000 0.00 0.00 0.00 4.17
2458 2668 1.375523 AAATCGGGAGCGTCACACC 60.376 57.895 0.00 0.00 0.00 4.16
2459 2669 0.669318 TCAAATCGGGAGCGTCACAC 60.669 55.000 0.00 0.00 0.00 3.82
2460 2670 0.669318 GTCAAATCGGGAGCGTCACA 60.669 55.000 0.00 0.00 0.00 3.58
2461 2671 1.359459 GGTCAAATCGGGAGCGTCAC 61.359 60.000 0.00 0.00 0.00 3.67
2462 2672 1.079405 GGTCAAATCGGGAGCGTCA 60.079 57.895 0.00 0.00 0.00 4.35
2463 2673 3.795638 GGTCAAATCGGGAGCGTC 58.204 61.111 0.00 0.00 0.00 5.19
2466 2676 0.108520 TGTACGGTCAAATCGGGAGC 60.109 55.000 0.00 0.00 0.00 4.70
2467 2677 1.203994 AGTGTACGGTCAAATCGGGAG 59.796 52.381 0.00 0.00 0.00 4.30
2468 2678 1.259609 AGTGTACGGTCAAATCGGGA 58.740 50.000 0.00 0.00 0.00 5.14
2469 2679 2.945447 TAGTGTACGGTCAAATCGGG 57.055 50.000 0.00 0.00 0.00 5.14
2470 2680 4.426416 TGATTAGTGTACGGTCAAATCGG 58.574 43.478 0.00 0.00 0.00 4.18
2471 2681 6.693978 TGTATGATTAGTGTACGGTCAAATCG 59.306 38.462 0.00 0.00 0.00 3.34
2472 2682 7.305820 CGTGTATGATTAGTGTACGGTCAAATC 60.306 40.741 0.00 0.00 0.00 2.17
2473 2683 6.474427 CGTGTATGATTAGTGTACGGTCAAAT 59.526 38.462 0.00 0.00 0.00 2.32
2474 2684 5.801444 CGTGTATGATTAGTGTACGGTCAAA 59.199 40.000 0.00 0.00 0.00 2.69
2475 2685 5.334319 CGTGTATGATTAGTGTACGGTCAA 58.666 41.667 0.00 0.00 0.00 3.18
2476 2686 4.731483 GCGTGTATGATTAGTGTACGGTCA 60.731 45.833 0.00 0.00 0.00 4.02
2477 2687 3.727723 GCGTGTATGATTAGTGTACGGTC 59.272 47.826 0.00 0.00 0.00 4.79
2478 2688 3.129113 TGCGTGTATGATTAGTGTACGGT 59.871 43.478 0.00 0.00 0.00 4.83
2479 2689 3.697982 TGCGTGTATGATTAGTGTACGG 58.302 45.455 0.00 0.00 0.00 4.02
2480 2690 5.478001 GTTTGCGTGTATGATTAGTGTACG 58.522 41.667 0.00 0.00 0.00 3.67
2481 2691 5.478001 CGTTTGCGTGTATGATTAGTGTAC 58.522 41.667 0.00 0.00 0.00 2.90
2482 2692 5.689927 CGTTTGCGTGTATGATTAGTGTA 57.310 39.130 0.00 0.00 0.00 2.90
2483 2693 4.577687 CGTTTGCGTGTATGATTAGTGT 57.422 40.909 0.00 0.00 0.00 3.55
2497 2707 1.717113 TCTTGATCGTACACGTTTGCG 59.283 47.619 5.81 5.81 44.93 4.85
2498 2708 3.366724 TGATCTTGATCGTACACGTTTGC 59.633 43.478 1.19 0.00 40.80 3.68
2499 2709 4.031765 CCTGATCTTGATCGTACACGTTTG 59.968 45.833 1.19 0.00 40.80 2.93
2500 2710 4.174009 CCTGATCTTGATCGTACACGTTT 58.826 43.478 1.19 0.00 40.80 3.60
2501 2711 3.428999 CCCTGATCTTGATCGTACACGTT 60.429 47.826 1.19 0.00 40.80 3.99
2502 2712 2.099263 CCCTGATCTTGATCGTACACGT 59.901 50.000 1.19 0.00 40.80 4.49
2503 2713 2.357952 TCCCTGATCTTGATCGTACACG 59.642 50.000 6.19 0.00 41.45 4.49
2504 2714 3.381908 AGTCCCTGATCTTGATCGTACAC 59.618 47.826 6.19 1.73 0.00 2.90
2505 2715 3.632333 AGTCCCTGATCTTGATCGTACA 58.368 45.455 6.19 0.00 0.00 2.90
2506 2716 3.632604 TGAGTCCCTGATCTTGATCGTAC 59.367 47.826 6.19 2.53 0.00 3.67
2507 2717 3.632604 GTGAGTCCCTGATCTTGATCGTA 59.367 47.826 6.19 0.00 0.00 3.43
2508 2718 2.428890 GTGAGTCCCTGATCTTGATCGT 59.571 50.000 6.19 0.00 0.00 3.73
2509 2719 2.542618 CGTGAGTCCCTGATCTTGATCG 60.543 54.545 6.19 2.03 0.00 3.69
2510 2720 2.223923 CCGTGAGTCCCTGATCTTGATC 60.224 54.545 3.82 3.82 0.00 2.92
2511 2721 1.759445 CCGTGAGTCCCTGATCTTGAT 59.241 52.381 0.00 0.00 0.00 2.57
2512 2722 1.186200 CCGTGAGTCCCTGATCTTGA 58.814 55.000 0.00 0.00 0.00 3.02
2513 2723 1.186200 TCCGTGAGTCCCTGATCTTG 58.814 55.000 0.00 0.00 0.00 3.02
2514 2724 1.938585 TTCCGTGAGTCCCTGATCTT 58.061 50.000 0.00 0.00 0.00 2.40
2515 2725 1.827969 CTTTCCGTGAGTCCCTGATCT 59.172 52.381 0.00 0.00 0.00 2.75
2516 2726 1.825474 TCTTTCCGTGAGTCCCTGATC 59.175 52.381 0.00 0.00 0.00 2.92
2517 2727 1.938585 TCTTTCCGTGAGTCCCTGAT 58.061 50.000 0.00 0.00 0.00 2.90
2518 2728 1.938585 ATCTTTCCGTGAGTCCCTGA 58.061 50.000 0.00 0.00 0.00 3.86
2519 2729 3.384789 TGATATCTTTCCGTGAGTCCCTG 59.615 47.826 3.98 0.00 0.00 4.45
2520 2730 3.385111 GTGATATCTTTCCGTGAGTCCCT 59.615 47.826 3.98 0.00 0.00 4.20
2521 2731 3.132289 TGTGATATCTTTCCGTGAGTCCC 59.868 47.826 3.98 0.00 0.00 4.46
2522 2732 4.386867 TGTGATATCTTTCCGTGAGTCC 57.613 45.455 3.98 0.00 0.00 3.85
2523 2733 5.062308 GTGTTGTGATATCTTTCCGTGAGTC 59.938 44.000 3.98 0.00 0.00 3.36
2524 2734 4.929808 GTGTTGTGATATCTTTCCGTGAGT 59.070 41.667 3.98 0.00 0.00 3.41
2525 2735 4.929211 TGTGTTGTGATATCTTTCCGTGAG 59.071 41.667 3.98 0.00 0.00 3.51
2526 2736 4.888917 TGTGTTGTGATATCTTTCCGTGA 58.111 39.130 3.98 0.00 0.00 4.35
2527 2737 5.179368 AGTTGTGTTGTGATATCTTTCCGTG 59.821 40.000 3.98 0.00 0.00 4.94
2528 2738 5.305585 AGTTGTGTTGTGATATCTTTCCGT 58.694 37.500 3.98 0.00 0.00 4.69
2529 2739 5.639506 AGAGTTGTGTTGTGATATCTTTCCG 59.360 40.000 3.98 0.00 0.00 4.30
2530 2740 7.602644 TGTAGAGTTGTGTTGTGATATCTTTCC 59.397 37.037 3.98 0.00 0.00 3.13
2531 2741 8.534333 TGTAGAGTTGTGTTGTGATATCTTTC 57.466 34.615 3.98 0.00 0.00 2.62
2532 2742 8.902540 TTGTAGAGTTGTGTTGTGATATCTTT 57.097 30.769 3.98 0.00 0.00 2.52
2533 2743 8.902540 TTTGTAGAGTTGTGTTGTGATATCTT 57.097 30.769 3.98 0.00 0.00 2.40
2566 2776 9.394767 TGCTTGTAATATGATGTTTGTATGACT 57.605 29.630 0.00 0.00 0.00 3.41
2567 2777 9.655769 CTGCTTGTAATATGATGTTTGTATGAC 57.344 33.333 0.00 0.00 0.00 3.06
2568 2778 8.839343 CCTGCTTGTAATATGATGTTTGTATGA 58.161 33.333 0.00 0.00 0.00 2.15
2569 2779 8.839343 TCCTGCTTGTAATATGATGTTTGTATG 58.161 33.333 0.00 0.00 0.00 2.39
2570 2780 8.978874 TCCTGCTTGTAATATGATGTTTGTAT 57.021 30.769 0.00 0.00 0.00 2.29
2571 2781 7.012327 GCTCCTGCTTGTAATATGATGTTTGTA 59.988 37.037 0.00 0.00 36.03 2.41
2572 2782 6.183360 GCTCCTGCTTGTAATATGATGTTTGT 60.183 38.462 0.00 0.00 36.03 2.83
2573 2783 6.204359 GCTCCTGCTTGTAATATGATGTTTG 58.796 40.000 0.00 0.00 36.03 2.93
2574 2784 5.300286 GGCTCCTGCTTGTAATATGATGTTT 59.700 40.000 0.00 0.00 39.59 2.83
2575 2785 4.823989 GGCTCCTGCTTGTAATATGATGTT 59.176 41.667 0.00 0.00 39.59 2.71
2576 2786 4.103785 AGGCTCCTGCTTGTAATATGATGT 59.896 41.667 0.00 0.00 39.59 3.06
2577 2787 4.649692 AGGCTCCTGCTTGTAATATGATG 58.350 43.478 0.00 0.00 39.59 3.07
2578 2788 4.562347 CGAGGCTCCTGCTTGTAATATGAT 60.562 45.833 9.32 0.00 39.59 2.45
2579 2789 3.243873 CGAGGCTCCTGCTTGTAATATGA 60.244 47.826 9.32 0.00 39.59 2.15
2580 2790 3.062763 CGAGGCTCCTGCTTGTAATATG 58.937 50.000 9.32 0.00 39.59 1.78
2581 2791 2.965831 TCGAGGCTCCTGCTTGTAATAT 59.034 45.455 9.32 0.00 39.59 1.28
2582 2792 2.362397 CTCGAGGCTCCTGCTTGTAATA 59.638 50.000 9.32 0.00 39.59 0.98
2583 2793 1.137872 CTCGAGGCTCCTGCTTGTAAT 59.862 52.381 9.32 0.00 39.59 1.89
2584 2794 0.532573 CTCGAGGCTCCTGCTTGTAA 59.467 55.000 9.32 0.00 39.59 2.41
2585 2795 1.323271 CCTCGAGGCTCCTGCTTGTA 61.323 60.000 20.67 0.00 39.59 2.41
2586 2796 2.654079 CCTCGAGGCTCCTGCTTGT 61.654 63.158 20.67 0.00 39.59 3.16
2587 2797 2.186384 CCTCGAGGCTCCTGCTTG 59.814 66.667 20.67 0.00 39.59 4.01
2588 2798 3.080121 CCCTCGAGGCTCCTGCTT 61.080 66.667 26.87 0.00 39.59 3.91
2601 2811 1.859383 GCTCTTGTATTCGAGCCCTC 58.141 55.000 0.00 0.00 45.21 4.30
2606 2816 2.853731 ACCGAGCTCTTGTATTCGAG 57.146 50.000 12.85 0.00 35.19 4.04
2607 2817 4.913335 ATAACCGAGCTCTTGTATTCGA 57.087 40.909 12.85 0.00 35.19 3.71
2608 2818 5.998553 TCTATAACCGAGCTCTTGTATTCG 58.001 41.667 12.85 0.00 0.00 3.34
2609 2819 7.594714 TCATCTATAACCGAGCTCTTGTATTC 58.405 38.462 12.85 0.00 0.00 1.75
2610 2820 7.231722 ACTCATCTATAACCGAGCTCTTGTATT 59.768 37.037 12.85 1.43 0.00 1.89
2611 2821 6.717540 ACTCATCTATAACCGAGCTCTTGTAT 59.282 38.462 12.85 8.40 0.00 2.29
2612 2822 6.062749 ACTCATCTATAACCGAGCTCTTGTA 58.937 40.000 12.85 2.29 0.00 2.41
2613 2823 4.890581 ACTCATCTATAACCGAGCTCTTGT 59.109 41.667 12.85 6.03 0.00 3.16
2614 2824 5.009110 TGACTCATCTATAACCGAGCTCTTG 59.991 44.000 12.85 5.33 0.00 3.02
2615 2825 5.133941 TGACTCATCTATAACCGAGCTCTT 58.866 41.667 12.85 2.56 0.00 2.85
2616 2826 4.720046 TGACTCATCTATAACCGAGCTCT 58.280 43.478 12.85 0.00 0.00 4.09
2617 2827 4.614993 GCTGACTCATCTATAACCGAGCTC 60.615 50.000 2.73 2.73 0.00 4.09
2618 2828 3.254657 GCTGACTCATCTATAACCGAGCT 59.745 47.826 0.00 0.00 0.00 4.09
2619 2829 3.570559 GCTGACTCATCTATAACCGAGC 58.429 50.000 0.00 0.00 0.00 5.03
2620 2830 3.365465 CCGCTGACTCATCTATAACCGAG 60.365 52.174 0.00 0.00 0.00 4.63
2621 2831 2.552743 CCGCTGACTCATCTATAACCGA 59.447 50.000 0.00 0.00 0.00 4.69
2622 2832 2.552743 TCCGCTGACTCATCTATAACCG 59.447 50.000 0.00 0.00 0.00 4.44
2623 2833 4.551388 CTTCCGCTGACTCATCTATAACC 58.449 47.826 0.00 0.00 0.00 2.85
2624 2834 3.984633 GCTTCCGCTGACTCATCTATAAC 59.015 47.826 0.00 0.00 0.00 1.89
2625 2835 3.636764 TGCTTCCGCTGACTCATCTATAA 59.363 43.478 0.00 0.00 36.97 0.98
2626 2836 3.222603 TGCTTCCGCTGACTCATCTATA 58.777 45.455 0.00 0.00 36.97 1.31
2627 2837 2.034878 TGCTTCCGCTGACTCATCTAT 58.965 47.619 0.00 0.00 36.97 1.98
2628 2838 1.474330 TGCTTCCGCTGACTCATCTA 58.526 50.000 0.00 0.00 36.97 1.98
2629 2839 0.610174 TTGCTTCCGCTGACTCATCT 59.390 50.000 0.00 0.00 36.97 2.90
2630 2840 0.723981 GTTGCTTCCGCTGACTCATC 59.276 55.000 0.00 0.00 36.97 2.92
2631 2841 0.035317 TGTTGCTTCCGCTGACTCAT 59.965 50.000 0.00 0.00 36.97 2.90
2632 2842 0.179059 TTGTTGCTTCCGCTGACTCA 60.179 50.000 0.00 0.00 36.97 3.41
2633 2843 1.160137 ATTGTTGCTTCCGCTGACTC 58.840 50.000 0.00 0.00 36.97 3.36
2634 2844 2.472695 TATTGTTGCTTCCGCTGACT 57.527 45.000 0.00 0.00 36.97 3.41
2635 2845 2.939103 AGATATTGTTGCTTCCGCTGAC 59.061 45.455 0.00 0.00 36.97 3.51
2636 2846 3.266510 AGATATTGTTGCTTCCGCTGA 57.733 42.857 0.00 0.00 36.97 4.26
2637 2847 4.572389 ACTTAGATATTGTTGCTTCCGCTG 59.428 41.667 0.00 0.00 36.97 5.18
2638 2848 4.770795 ACTTAGATATTGTTGCTTCCGCT 58.229 39.130 0.00 0.00 36.97 5.52
2639 2849 6.787085 ATACTTAGATATTGTTGCTTCCGC 57.213 37.500 0.00 0.00 0.00 5.54
2640 2850 9.130312 GTCTATACTTAGATATTGTTGCTTCCG 57.870 37.037 0.00 0.00 36.84 4.30
2641 2851 9.982651 TGTCTATACTTAGATATTGTTGCTTCC 57.017 33.333 0.00 0.00 36.84 3.46
2669 2879 9.040939 GCCATTTTATGACAACTTGTTTAACTT 57.959 29.630 0.00 0.00 0.00 2.66
2670 2880 8.421002 AGCCATTTTATGACAACTTGTTTAACT 58.579 29.630 0.00 0.00 0.00 2.24
2671 2881 8.587952 AGCCATTTTATGACAACTTGTTTAAC 57.412 30.769 0.00 0.00 0.00 2.01
2672 2882 9.906660 CTAGCCATTTTATGACAACTTGTTTAA 57.093 29.630 0.00 0.00 0.00 1.52
2673 2883 8.026607 GCTAGCCATTTTATGACAACTTGTTTA 58.973 33.333 2.29 0.00 0.00 2.01
2674 2884 6.868339 GCTAGCCATTTTATGACAACTTGTTT 59.132 34.615 2.29 0.00 0.00 2.83
2675 2885 6.015519 TGCTAGCCATTTTATGACAACTTGTT 60.016 34.615 13.29 0.00 0.00 2.83
2676 2886 5.476599 TGCTAGCCATTTTATGACAACTTGT 59.523 36.000 13.29 0.00 0.00 3.16
2677 2887 5.801947 GTGCTAGCCATTTTATGACAACTTG 59.198 40.000 13.29 0.00 0.00 3.16
2678 2888 5.476599 TGTGCTAGCCATTTTATGACAACTT 59.523 36.000 13.29 0.00 0.00 2.66
2679 2889 5.009631 TGTGCTAGCCATTTTATGACAACT 58.990 37.500 13.29 0.00 0.00 3.16
2680 2890 5.309323 TGTGCTAGCCATTTTATGACAAC 57.691 39.130 13.29 0.00 0.00 3.32
2681 2891 5.973899 TTGTGCTAGCCATTTTATGACAA 57.026 34.783 13.29 9.67 0.00 3.18
2682 2892 5.476599 AGTTTGTGCTAGCCATTTTATGACA 59.523 36.000 13.29 3.30 0.00 3.58
2683 2893 5.801947 CAGTTTGTGCTAGCCATTTTATGAC 59.198 40.000 13.29 0.32 0.00 3.06
2684 2894 5.105797 CCAGTTTGTGCTAGCCATTTTATGA 60.106 40.000 13.29 0.00 0.00 2.15
2685 2895 5.104374 CCAGTTTGTGCTAGCCATTTTATG 58.896 41.667 13.29 3.21 0.00 1.90
2686 2896 4.160252 CCCAGTTTGTGCTAGCCATTTTAT 59.840 41.667 13.29 0.00 0.00 1.40
2687 2897 3.509575 CCCAGTTTGTGCTAGCCATTTTA 59.490 43.478 13.29 0.00 0.00 1.52
2688 2898 2.299867 CCCAGTTTGTGCTAGCCATTTT 59.700 45.455 13.29 0.00 0.00 1.82
2689 2899 1.895131 CCCAGTTTGTGCTAGCCATTT 59.105 47.619 13.29 0.00 0.00 2.32
2690 2900 1.075374 TCCCAGTTTGTGCTAGCCATT 59.925 47.619 13.29 0.00 0.00 3.16
2691 2901 0.698238 TCCCAGTTTGTGCTAGCCAT 59.302 50.000 13.29 0.00 0.00 4.40
2692 2902 0.698238 ATCCCAGTTTGTGCTAGCCA 59.302 50.000 13.29 7.05 0.00 4.75
2693 2903 2.289565 GTATCCCAGTTTGTGCTAGCC 58.710 52.381 13.29 4.15 0.00 3.93
2694 2904 2.985896 TGTATCCCAGTTTGTGCTAGC 58.014 47.619 8.10 8.10 0.00 3.42
2695 2905 5.635280 CGATATGTATCCCAGTTTGTGCTAG 59.365 44.000 0.00 0.00 0.00 3.42
2696 2906 5.303333 TCGATATGTATCCCAGTTTGTGCTA 59.697 40.000 0.00 0.00 0.00 3.49
2697 2907 4.100963 TCGATATGTATCCCAGTTTGTGCT 59.899 41.667 0.00 0.00 0.00 4.40
2698 2908 4.377021 TCGATATGTATCCCAGTTTGTGC 58.623 43.478 0.00 0.00 0.00 4.57
2699 2909 6.761242 TCTTTCGATATGTATCCCAGTTTGTG 59.239 38.462 0.00 0.00 0.00 3.33
2700 2910 6.884832 TCTTTCGATATGTATCCCAGTTTGT 58.115 36.000 0.00 0.00 0.00 2.83
2701 2911 6.425114 CCTCTTTCGATATGTATCCCAGTTTG 59.575 42.308 0.00 0.00 0.00 2.93
2702 2912 6.099845 ACCTCTTTCGATATGTATCCCAGTTT 59.900 38.462 0.00 0.00 0.00 2.66
2703 2913 5.602978 ACCTCTTTCGATATGTATCCCAGTT 59.397 40.000 0.00 0.00 0.00 3.16
2704 2914 5.011125 CACCTCTTTCGATATGTATCCCAGT 59.989 44.000 0.00 0.00 0.00 4.00
2705 2915 5.473931 CACCTCTTTCGATATGTATCCCAG 58.526 45.833 0.00 0.00 0.00 4.45
2706 2916 4.262463 GCACCTCTTTCGATATGTATCCCA 60.262 45.833 0.00 0.00 0.00 4.37
2707 2917 4.246458 GCACCTCTTTCGATATGTATCCC 58.754 47.826 0.00 0.00 0.00 3.85
2708 2918 3.921021 CGCACCTCTTTCGATATGTATCC 59.079 47.826 0.00 0.00 0.00 2.59
2709 2919 3.921021 CCGCACCTCTTTCGATATGTATC 59.079 47.826 0.00 0.00 0.00 2.24
2710 2920 3.306088 CCCGCACCTCTTTCGATATGTAT 60.306 47.826 0.00 0.00 0.00 2.29
2711 2921 2.035449 CCCGCACCTCTTTCGATATGTA 59.965 50.000 0.00 0.00 0.00 2.29
2712 2922 1.202533 CCCGCACCTCTTTCGATATGT 60.203 52.381 0.00 0.00 0.00 2.29
2713 2923 1.502231 CCCGCACCTCTTTCGATATG 58.498 55.000 0.00 0.00 0.00 1.78
2714 2924 0.249911 GCCCGCACCTCTTTCGATAT 60.250 55.000 0.00 0.00 0.00 1.63
2715 2925 1.143183 GCCCGCACCTCTTTCGATA 59.857 57.895 0.00 0.00 0.00 2.92
2716 2926 2.125106 GCCCGCACCTCTTTCGAT 60.125 61.111 0.00 0.00 0.00 3.59
2717 2927 4.388499 GGCCCGCACCTCTTTCGA 62.388 66.667 0.00 0.00 0.00 3.71
2718 2928 4.394712 AGGCCCGCACCTCTTTCG 62.395 66.667 0.00 0.00 33.62 3.46
2732 2942 3.883549 GGATCCCAGGCAGGAGGC 61.884 72.222 0.00 0.00 39.95 4.70
2733 2943 2.040043 AGGATCCCAGGCAGGAGG 60.040 66.667 8.55 0.00 39.95 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.