>input_sequence_69854
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------------------------------------------------------AAATAAAAATATATGCAAT----CAA
TCTTCCAACACCTCACATCTTCATCTGCCATCTTCGACACATACACAAGACGGAATCCCTCTCAGGCAATGGCTTCCTTC
TCCTGCTCCTCTAGT------------AGCGTGATGGGCGTGATCTTGCTGCTCTTCTCCGTCCTCCTTGC---------
---------GCCTGCGCGGTCGGCCAGCGACCAGATGATACTTGCCGCATGCAAGACCGTCGGCGGCGGGAGCACCTACT
TCGACGTCACGTTCTGCTTGGAGGCCCTCGGCTCCGCGGGCGGCTCCGGCGGCTACCAAGACCTCGCGGCCGTCGCCGTG
GACCTCCTCGCGACCAACGCCACCAGCACGGAGGCCAAGATCGACCGCCTGCTCGGGTGCGGCGGCGTGGAGGTCAAGGC
GGATGACGCCGCCCTGGCGCGGTGCCTCCGGTCGTGCCAGTCGCTGTACGGCGGCATAGTGGACGACGGGCCTGCGTGCA
CCGCCGCGGTCAAGGGCGGGAGGTTCGGCGAGGCGACAGCGATCCTGGAGAAAGCCGCGGCCGCGGCGAAGGAGTGCGAG
GGTGGGTTCGAGAAGAGGAGAGCGGCTTCGCCGCTGACGGCGGAGGACGACGACGCGTTCAAGCTCGCAAAACTCGCCGT
CGCGTTGCTCCGTTTTGCTTGAGAGCCCGGAAACGGACATTGCTGCTACCGATGTTTCGA-----TTTTTTTTTCTTTTC
TTGAATA------TTTCGTATATTGCATACCTTTTCTTTAGGGTAGCATA------------------------------
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>chr4A_1_TraesCS4A01G186400
CTCGTAGAGGTCTACTCACCTTTATTAAGCAAACACATTGGTGAGAGCAATTTTTTTTTTTTTTGCAAAAGTTAATGGGC
TGCCATGTATCCTATGCCTATAAATTTCATATAGTAGGAGACACCA-----TCAAGGATTACATCCATCCACATGGTTGC
TTCTGGACCACAGTCTCTCTCTCTATGGCCTAGTTTGTAGGAAAAGCCCCACGCCACG-TTGCTTGTGTCTTACTTCCAT
TCCCTTTTGGTAAGAAATAGACGGACAAGAAATGTTGCGGCCCGCTCACAATTGCACCTCTTTGGTTGGCATCTTGCCTC
GATTATCATCACCTATTTTTCGAGTCTCATTATTACCACCTCTCGGAGCATTTCTTTGTGTATACACTTACATGCATAGT
ATTCTGTCTCATACTCGATTTGCAGGCCGGAATATCTCCTCAAATCACAAGAAAGGAAAACGAATATAGCCATTTGTGGG
TGGTAGAGTGAGGAGCAACAATGTGCGTCGTCACATGCAACGCGATGAGATGGATACACTACACACACCGATGATGAAAC
TTGGAAAGGCTAGCTATAGCTGACTACAGGTCCATTGCTTGCTGCGATGGCTCACTGGTTAGTTATGTTGGTCTAAAAGA
AGCTTGAAAGGAAAGGGCCACTATGGCAAGATAGCGTGACTCA------CCGACGCGTAGTAGTTTGGCAGTTCCTCTTC
TGTGGTGCTAGGCTGCTAGCCACGTGTTGGGCAAGTGATCTCTTTGGCTTTTCCCGACGGTCAGAAGTGCCATTTCTCTG
AAATACCGGGGCAGTTTTAAGGCCGATCGTAATGTATTCCCTCCGTAAACTAATATAAGAGCGTTTAGAATACTAAAATA
GTGATTTAAACATTCTTATATTAGTTTACAGAGGAGTAAATCCAAAAGTACACATGGTTTCAGTATGAGCGTGAAGAACA
CTCCATGATACTCGCGTGGTGAGCGTGGTGGTCAAATACAGA-ATCAAATCGA-AAATAAAAATATATGCAAT----CAA
TCTTCCAACACCTCACATCTTCATCTGCCATCTTCGACACATACACAAGACGGAATCCCTCTCAGGCAATGGCTTCCTTC
TCCTGCTCCTCTAGT------------AGCGTGATGGGCGTGATCTTGCTGCTCTTCTCCGTCCTCCTTGC---------
---------GCCTGCGCGGTCGGCCAGCGACCAGATGATACTTGCCGCATGCAAGACCGTCGGCGGCGGGAGCACCTACT
TCGACGTCACGTTCTGCTTGGAGGCCCTCGGCTCCGCGGGCGGCTCCGGCGGCTACCAAGACCTCGCGGCCGTCGCCGTG
GACCTCCTCGCGACCAACGCCACCAGCACGGAGGCCAAGATCGACCGCCTGCTCGGGTGCGGCGGCGTGGAGGTCAAGGC
GGATGACGCCGCCCTGGCGCGGTGCCTCCGGTCGTGCCAGTCGCTGTACGGCGGCATAGTGGACGACGGGCCTGCGTGCA
CCGCCGCGGTCAAGGGCGGGAGGTTCGGCGAGGCGACAGCGATCCTGGAGAAAGCCGCGGCCGCGGCGAAGGAGTGCGAG
GGTGGGTTCGAGAAGAGGAGAGCGGCTTCGCCGCTGACGGCGGAGGACGACGACGCGTTCAAGCTCGCAAAACTCGCCGT
CGCGTTGCTCCGTTTTGCTTGAGAGCCCGGAAACGGACATTGCTGCTACCGATGTTTCGA-----TTTTTTTTTCTTTTC
TTGAATA------TTTCGTATATTGCATACCTTTTCTTTAGGGTAGCATAATAAT-------------------------
--------------------------------------------------------------------CTTCTTGATTAG
TTGTTCTATTTATAACCGTGTCATGTGATCTGTGATCTGCGTTGTTGGTTAGATCATGTACCGAT----GATCCTACGTG
TCGTCTGTTGTCAAACAGTCAGG-GCGAAAATGTGAATTGAGGACTGCAGACCCTCTCGCAATAGTTTGAATTGCACGGT
CCGGACAATTTTACCATCTAACGCGATCATGTATCGGTTCACTCGACGGACGTCACTTTTAAGTAAGGGGGGACTTTATG
GATGTTCAGACTGCTGCCACGCAAGGGTCTGACAACCCCGGCCCACCCAAAACCTCTCCATTTACCTGCT-CTTTCCCGC
CCAAAGCGATCAGTGCCACATTCATGCTAGCCCAGAGCGGATGTGACCTCTCACGTTGCTTCGGCATTAAAGCGGTGCGC
CGGCCGACTGCTCCATTCAAACAACGGCGCGTTCGTCTGCCGCCCA-CATTAACCACCTCGTTACCTACCTAGCCATT--
------------------------------------------------CGCTTCCAATCTCCTCTCAGCACCACGACTAC
CATGGCCTCCTCGAGCTCTAAAGCCTTCTCGAACAGCCTCTTGTCCGAGCAGAAAAAGAAGATCGCCACCATTGCAGCCT
GCTGGCAGGATGACAGACGGACGAGCTCATCGGAGGTTAGTGTTGCAGACGCCCTAATGGAAGAGGCGGTCAACGAGCAG
GCGCTAAGGTCATTGCTGGTTGATGCTGGTGTGACGCTCCCGATTTGACCGTACACTAATCATACACGCAAACGTGTACG
ATCAAGATCAGGGACTCACGGAAAGATATCACAACACAACTCTACAAATAAAATAAGTCATACAAACATCATATTACAAG
CAGGAGCCTCGAGGGCTCGAATACAAGAGCTCGGTTATAGATGAGTCAGCGGAAGCAACAATATCTAAGTATAGACATAA
GTTAAACAAGTTGTCATAAAATGGCTAGCACAAACTGGGATACATATCGAAAGAGGTGCGGGCCTCCTGCCTGGGATCCT
>chr4B_1
CTCGTAGAGGTCTACTCACTCTTATTAAGCAAAAGCATTGGTGAGAGCA--TTTTTTTTCTGTTGCAAAAGTTAATGGAC
TGTCATGTGTGTCATGCCTATAAATTTCATATTGTAGGAGACATCCTT-CGTCAAGGATTACATCCATCCACGTGGTCGT
TTCTGGACCACAG--TCTCTCTCTATGGCCCGATTTGTAGGAAAAGACCCATGCCATGTTTGCTTGTGTCTTACTTTCAT
TCCCTTTTCATAAGAAATAGATGGACAAGAAATGCCA---CCCGCTCATAATTGCCCCCCTTTGGTTGGCATCTTGCCTC
CATTATCATCACCTATTTTGCGAGTCTCATTATTACCACCTCTTGGAGCACTTCTTTGTGTGTACACTTGCATGCATAGT
ATTCTGTCTCGTACTCGATTTGCAGGCCGGAATAGTTCCTCAAATCACAAGAAAGGAAAACGAATATAGCTATTCGTGGG
TGGTAGAGTGAGGAGCAACAATGTGTGTGGTCACATGCAACGTGATGAGATGGATACAC-----ACACCGACGATGAAAC
TTAGAAAGGCTAGCTGTAGCTGAC---AGGTCCATTGCTTGCTGTGATGGCTCACTGGTTAGTTATGTTTGTCTC-AAAA
TGCTTAAAAGGAAAA--CCACTATGGCAAGATAGCGTGACTCATTTGCATCGACGCGTAGTCGTTTGGCAGTTCCTCTTC
TGTGGTGCTAGGCTCCTAGCCACGTGTTGAACAAGTTTCTT---TGGC-TTTCCCGACGGTTTGAAGTACCATTTCTCTG
AAATACCGGGGCAATTTTAAGGCCGATCGTAGAT----------------------------------------------
-----------------------------------GTAAATCCAAAAGTACACACGATATCAGTACGAGCATGAAGAACA
CTCCATGATACTCGCGTGATGAGCGTGGTGGCCAAATACAGATATCAAATCGAAAAGTAAAAATATATGCAATTAATCAA
TCTTCCAACACCTCACATGTTCATCTGCCATCTTCCACACATACACAAGACGGAATCCTTCTCAGGCAATGGCTTCCTTC
TCCTGTTCCTCCTCTAGTAGTGTGATGAGCGTGATGGGCGTGATCTTGCTGCTCTTCTCCGTCCTCCTTGCGGCTGCCGA
AGCACCTGTGCCTGCGCGGTCGGCCAGCGACCAGATGATACTTGCCGCATGCAAGACCGTCGGCGGCGGGAGCACCTACT
TCGACGTCACGTTCTGCCTGGGTGCCCTCGGCTCCGCGGGCGGCGCCGGCGGCTACCAAGACCTCGCCGCCGTCGCCGTG
GACCTCCTCGCGACCAACGCCACCAGCACGGAGGCCAAGATCGACCGCCTGCTCGGTGGCAGCGGCGTGGAGGTCAAGGC
GGATGACGCCGCCCTGGCGCGGTGCCTCCGGTCGTGCCAGTCGCTGTACGGCGGCATAGTGGACGACGGGCCTGCGTGCA
CCGCCGCGGTCAATGGCGGGAGGTTCGGCGAGGCGACAGCGATCCTGGAGAAGGCCGCGGCCGCGGCCAAGGAGTGCGAG
GGCGGGTTCGAGAAGAGCAGCGCGGCTTCGCCGCTGACGGCGGAGGACGACGACGCGTTCAAGCTCGCAAAGCTCGCCGT
CGCGTTGCTCCGTTTTGCTTCAGAGCCCGGAAACGGACATTGCTGCTACTGATGTTTCGAATTTTTTTTTTGTTCTTTTC
TTTTTTTGAGTATTTTCGTATATTGCATA---------------------ATAAC-------------------------
--------------------------------------------------------------------ATTCTTGATTAG
TTGTTCTATTTGTAACCGTG------------------------------------------------------------
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>chr4D_1
CTCGTAGAGGTCTACTCGCCCTTATTAAGTAAACGCATTGGTGAGAGCT--TTTTTTTTTGC-----AAAGTTAATGGAC
TGCCATGTGTCTCATGCCTAGAAATTCCATATTGCAGGAGACATCCTTTCGTCAAGGATTACATCCATCCACATGATTGC
TTCTGGACCACAG--TCGCTTTCTATGGCCCGATTTATAGGAAAAGCCCCACGCTATG-TTACTTGCGTTCTACTTTTAT
TCCTTTTTCGTAAGAAATAGACAGACAAGAAATGTCGCGGCCCGCTCATAATTGTACCCCTTTGGTTGGCATC-------
---------CACCTATTTTTCGAGTCTCATTATTACCACCTCTGA-AGCACTTC-TTGTGTATACAATTGCATGCATAGT
ATTCTGTTTCATACTCGATTTGCAGGCCGGAAAATTTGCTCAAATCACAACAAAGGAAAACGAATATAGCCATTTGTAGG
TAGTAGAGTGAGGAGCAATAATGTGTGTCGTCACATGCAACGTGATGAGATGGATACAC-----ACACCGATGATGAAAC
TTGGAAAGGCTAGCTATCGCTGAC---AAGTCCATTGCTTGCTGCGGTGGCTCACTGGCTAGTTATGTTGGTCTAAAAGA
AGCTTAAAAGGAAAGGGCCACTATGGCACGATAGCGTGACTCATTTGCACCGGCGCGTAGTAGTTTGGCAGTTCCTCTTC
TGTGGTGCTAGGCTGCTAGCCACGTGGATGACAATTTTCTA---TGGCTTTTCCCGACGGTCTGAAGTGCCATTTCTCTG
AACTACCGGG-CAGTTTTAATGTCGTA-----AT----------------------------------------------
-----------------------------------GTAAATCCAAAAGTACACATGATATCAGTATGAGCATGAAGAACA
CTCCACGATACTCGTGTGATGAGCGTGGTGGCCAAATACAGA-ATCAAGTCGAAAAATAAAAATATATGCAAT----CGA
TCTTCCAACACCTCACATGTTCATCTGCCATCTTCGACACGTACACAAGACGGAATCCTTCTCAGGCAATGGCTTCCTTC
TCCTGTTCCTCTAGT------------AGCGTGATGAGCGTGATTTTGCTGCTCTTCTCCGTCCTCCTTGCGGCTGCCGA
GGCACCTGCGCCTGCGCGGTCGGCCAGCGACCAGATCATACTTGCCGCATGCAAGACCGTCGGCGGCGGGAGCACCTACT
TCGACGTCACGTTCTGCCTGGGTGCCCTCGGCTCCGCCGGCAGCGCCGCCGGCTACCAAGACCTCGCCGCCGTCGCCGTG
GACCTCCTCGCGACCAACGCCACCAGCACGGAGGCCAAGATCGATCGCCTGCTCGGTGGCAGCGGCGTGAAGGTCAAGCC
GGGTGACGCCGCCCTGGCGCGGTGCCTCCGGTGGTGCCGGTCGCTGTACGGCGGCATAGTGGACGACGGGCCTGCGTCCA
CCGCCGCGGTCAAGGGCGGGAGGTTCGGAGAGGCGACAGCGATCCTGGAGAAGGCCGCGGCCGCGGCGAAGGAGTGCGAG
GGCGGGTTCGAGAAGAGCAAAGCGGCTTCGCCGCTGACGGCGGAGGACGACGACGCGTTCAAGCTCGCAAAGCTCGCCGT
CGCGTTGCTCCGTTTTGACGAGAAA-------------------------------------------------------
TTGGATA------TTTCGCCCCGCTTTACTTCTTCATTTGATCATTCGCCTTCCTGAGAGGCTATCGGATGGGGCCCGGA
GCCATTATCATTGAGACAATCAAAGGACAAGTCATCCAACGCCTTGAAAAATAGGGCAAATCATCCAACTTCTTGATTAG
TTGTTCTATTTGTAACCGTGCCATGTGATCTGTGATCTGCGTTGTTGGTTAGATCATGTACTGA----TGATCCTACGTG
TTATCTGCTGTCGGGCAGTCAGG-GTGAAAATGTGAATTAAGGACTGCGGACCCTCTGGCAAT-----------------
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>chr7D_1089
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------------------------------------------------------------------CAATGGCTTCCTTC
TCCTCTTCCTCTACT------------AGCGTGATCATCGTCCTCTTGTTGCTCTTGCCCGTCCTCCTTGCGCCGCCGGC
AAGTGCCATCCCTG------------------------TACTTGCCGCATGCAAGACCGTCGGCGGCGGGAGCACCTACT
TCGACGTCACGTTCTGCCTGGAGGCCCTTGGCTCGGTCGGCGGTGGCGGCGTCTACTGAGACCTCGCCGCCGCTGCCGTG
GGCCTCCTCGGTACCAACGCCACCAGCACCCAGGCCAAGATCGGCCGTCTGCTTGGGCAGAGCGGCGTGAAGATTAAGGT
GGGGGACACGGCCCTGGTGCGGCCCCTCCGGTCGTGCCAGTCGTTGTACGGCGGTATAGTGCACGGTGGGCCTGCATGCA
CCGCCGCGGTCAAGGGCGGGAAGTTCGGCGATGCGGCGGCGATTCTGGAGAAGGCAGCAGCCGCAGCGAAGGAGTGCGAG
GGCGGGTTCAGGAAGAGCAAAGCGG---CGCCGCTGACGGCGGAGGACGATGACACGTTCAAGCTCGCAAAGCTCGGCGT
CGCGTTACTCGGTTTGGCTTGAGAGCGCGGAAA-----------------------------------------------
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>chr4A_1091
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--------------------------------------------------------------------ATGGCTTCCTTC
TCCTCTTCCTCCACT------------AGCGTGATCATCGTCCTCTTGCTGCTCTTGCCCGTCCTCCTTGCCCCGCCGGC
GAGTGCCGTCCCTG------------------------TACTTGCTGCATGCAAGACCGTCGGTGGCGGGAGCACCTACT
TCGACGTCACGTTCTGCCTGGAGGCCCTAGGCTCCGTCGGCGGTGGCGGTGTCTACCAAGACCTCGCCGCCGCTGCCGTG
GGCCTCCTCGCTACCAACGCCACCAGCACGGAGGCCAAGATCGGCCGTCTGCTTGGGGAGAGCGGCGTGAAGATTAAGGC
GGGTGACGCGGCCCTGGCGAGGACCCTCCGGTCATGCCAGTCGCTGTACGGCAGTATAGTGCACGGCGTTCCTGCGTGCA
CCGCCGCGGTCAAGGGCGGGAAGTTCCGCGATGCGACGGCGATCCTGGAGAAGGCAGCGGCTGCAGCGAAGAAGTGCGAG
GATGGGTTCAGGAAGAGCAACGCGTCCTCGCCGCTGACGGCGGAGGACGAGGACGCGTTCAAGCTCGCAAAGCTCGGCGT
CGCATTGCTCGGTTTCGCTTGAGAGCGCGG--------------------------------------------------
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>chr7A_1091
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--------------------------------------------------------------------ATGGCTTCCTTC
TCCTCTTCCTCTACT------------AGCGTGATCACCGTCCTCTTGCTGCTCTTGCCCGTCCTCCTTGCGCCGCCGGC
GAGTGCCGTCCCTG------------------------TACTTGCCGCATGCAAGACCGTCGGCGGCGGGAGCACCTACT
TCGACGTCACGTTCTGCCTGGAGGCCCTAGGCTCCGTCGGCGGTGGCGGTCTCTACCGAGACCTCGCCGCCGCTGCCGTG
GGCCTCCTCGCTGCCAACGCCACCAGCACGGAGGCCAAGATCGGCCGTCAGCTTGGGGAGAGCGGCGTGAAGATTAAGGC
GGGGGACGCGGCCCTGGCGCGGCCCCTCCGGTCGTGCCTGTCGCTGTACGGCGGTATAGTGCACGGTGGGCCTGCGTGCG
CTGCCGCGGTCAAGGGCGGGAAGTTCGGCGATGCGACGGCGATCCTGGAGAAGGCAGCGGCCGCAGCGAAGGAGTGCGAG
GACGGGTTCAGGAGGAGCAACGCGGCTTCGCCGCTGACGGCGGAGGACGATGACGCGTTCAAGCTCGCAAAGCTCGGCGT
CGCGTTGCTCGGTTTCGCTTGAGAGCGCGGAAA-----------------------------------------------
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>chr4B_1775
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------TATTTGTAACCGTGCCATCTGATGTGTGATCTGCGTTGTTGGTTAGATCATGTATCGATGATTGATCCTACCTG
TTGTATGTTGTCGGGCAGTCATGCGTGAAAATGTGAA-TAAGGACTGCGAACCCTCTCGCAATCGTTTGAATTGCGCGGT
CCATACGATTTTGCCATCGAGGGATGCCCTGTATCTGTCCGCTTGACAGACGTCACTTTTAAGCAAGGG-GGACATTGTG
GGACTTCAAACCGCTGCCACGCAAGCGTACGACAACCCTAGCTCACCCAAAACCTCTTCCTCTACCTTGAACTTTCCCGC
CCAAAGCGATCAGTGCCGCATTCATGCCGGCCCAGAGCGGACATGACCTCTCACGTTACTCCGGCATTGAAGCGGTGCGC
CGGCCGACTGCTCCATTCAATTGACGGTGCTTCCGTCTGCCACCCACCATTAACCACCTCGCTACCTACCCTGCCATCCG
CCCACTATATAAACTCTAGGTCTGGCAACAACCGCATCCAACCTCCTCCGCTCCCAATCTCCTATCGACACCACGACTGC
CATGGCCTCCTCGAGCTCTAAAGCCTTCTCCGACAGCATCTCGTCCGAGCAGAAAAAGAAGATCGCCGCCATTCCAGTCT
ACTGGCAGTACGACAGATGGAAGAGCTCATCAGAGGCTAGTGTTGTAGACGCCCCAATGGAAGAGGCAGTTGACGAGCCG
GCGCCAAGGTCCTTGCCGGTTGATG-------------------------------------------------------
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>SNPs
--------------------S-------------S--------------SS----------S----------------S-
--------S--SS-------------------S----------S-S----------------------------------
-------------SS---------------SSS-----------------------S-------------------S---
--------S--------------------------S------------S---------S---------------------
S------------------------------------------S------S------------------S----------
-----------------------------------S--------------------------------------------
-------------------------S----------------S----------------SSSSS----------------
------------------------SSS-----------------------------------------------------
-----S--------------------------------------------------------------------------
------------------------------S-----SSSS-SSS------------------S-----------------
-------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------S-S-----------S---------
------------------S------------S------------------------------------------------
------------------S---------------------------------------S---------------------
-----S--------------------------------------------------------------------------
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-----------------S--------------------------S----------------------S------------
---------------------------------------------------------S--S-------------------
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----------------------------------------------------S---------------------------
-----------------S-----------------------------------------------------S--------
-------------------------------------------------S---------------------S--------
---S-------------------------SSS--SS---SSSSSSS-SSS------------------------------
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-----------S--------S-----------------------------------------------------------
-S----------SSS----------S-------------S--------S--------------S-----------S----
--SS--S-----S-----S-SS-SSSS-S------S--S-S--S---S---------------S-----S----S--S--
-SSS----S--S-------------S--SS--------SS--S--------------S-S-S-----SSS----------
-----------------S---------SS------------SS--------------S--S-------S-----------
--------------------SSS----S--S-S--------S-------------------S--------SS-----S--
----------------------------------------------------S----------S--SS----------S-
------------------------------SS-----S---S-------------------------S-----S---S--
S-------S-S------S---S---------S----S--------S--------S------------S--SS------S-
----S------S----S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_979
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-------------------------------------------------------------------------------A
CTCCATGATACTCGCGTGG-------------------------------------------------------------
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>reverse_2841
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----------------------------------------ATGAGTCAGCGGAAGCAACA--------------------
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