Multiple sequence alignment - TraesCS4A01G186300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G186300 chr4A 100.000 4528 0 0 1 4528 465407869 465412396 0.000000e+00 8362.0
1 TraesCS4A01G186300 chr4D 95.034 1490 55 7 1481 2970 111938228 111936758 0.000000e+00 2324.0
2 TraesCS4A01G186300 chr4D 89.929 1539 88 39 2969 4475 111936793 111935290 0.000000e+00 1921.0
3 TraesCS4A01G186300 chr4D 89.397 1509 83 38 1 1477 111939736 111938273 0.000000e+00 1829.0
4 TraesCS4A01G186300 chr4B 93.289 1490 69 7 1481 2968 172506071 172504611 0.000000e+00 2169.0
5 TraesCS4A01G186300 chr4B 84.887 1502 76 44 1 1470 172507503 172506121 0.000000e+00 1376.0
6 TraesCS4A01G186300 chr4B 88.567 1172 74 27 3149 4292 172504407 172503268 0.000000e+00 1367.0
7 TraesCS4A01G186300 chr4B 96.970 66 2 0 3066 3131 172504582 172504517 1.330000e-20 111.0
8 TraesCS4A01G186300 chr4B 94.915 59 1 1 2969 3025 172504644 172504586 1.730000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G186300 chr4A 465407869 465412396 4527 False 8362.000000 8362 100.000000 1 4528 1 chr4A.!!$F1 4527
1 TraesCS4A01G186300 chr4D 111935290 111939736 4446 True 2024.666667 2324 91.453333 1 4475 3 chr4D.!!$R1 4474
2 TraesCS4A01G186300 chr4B 172503268 172507503 4235 True 1022.920000 2169 91.725600 1 4292 5 chr4B.!!$R1 4291

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
577 600 0.038166 TGGAATCTGACAGTTGGGGC 59.962 55.0 1.59 0.0 0.00 5.80 F
1475 1536 0.184933 TGGGCAACTTGGCTAGTGTT 59.815 50.0 14.48 0.0 43.20 3.32 F
1684 1785 0.392461 ACCACATACCGTGCATCCAC 60.392 55.0 0.00 0.0 44.91 4.02 F
1687 1788 0.392461 ACATACCGTGCATCCACCAC 60.392 55.0 0.00 0.0 38.79 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1658 1759 0.323629 CACGGTATGTGGTGGGAAGT 59.676 55.0 0.00 0.0 45.21 3.01 R
2679 2782 0.321919 ATGACAGCACCAGACGCATT 60.322 50.0 0.00 0.0 0.00 3.56 R
3104 3207 0.652071 GCAGCAAACAAGCCAAACAC 59.348 50.0 0.00 0.0 34.23 3.32 R
3531 3726 2.839486 TTCTCAGCAATGGACGTCTT 57.161 45.0 16.46 0.0 0.00 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
141 143 1.750399 GCATGTGGGGGCACACTAG 60.750 63.158 11.90 6.37 41.84 2.57
179 181 2.420058 GCCCATAGCAAGTACCAAGT 57.580 50.000 0.00 0.00 42.97 3.16
180 182 3.553828 GCCCATAGCAAGTACCAAGTA 57.446 47.619 0.00 0.00 42.97 2.24
200 202 2.533266 AAGCGACTGGCCATACATAG 57.467 50.000 5.51 0.00 45.17 2.23
220 222 7.445121 ACATAGAGATTGGATAAAGCAATCGA 58.555 34.615 0.00 0.00 39.52 3.59
223 225 3.248602 AGATTGGATAAAGCAATCGACGC 59.751 43.478 0.00 0.36 39.52 5.19
232 234 0.789383 GCAATCGACGCAAAAGGACG 60.789 55.000 3.85 0.00 0.00 4.79
300 302 3.744426 CGGAGAAACACAACTACGGAAAT 59.256 43.478 0.00 0.00 36.90 2.17
309 311 1.641577 ACTACGGAAATCGAAGCAGC 58.358 50.000 0.00 0.00 42.43 5.25
343 345 1.990799 TACCAGTTGAATCGACGCAG 58.009 50.000 0.00 0.00 0.00 5.18
344 346 1.291877 ACCAGTTGAATCGACGCAGC 61.292 55.000 0.00 0.00 0.00 5.25
345 347 1.291184 CCAGTTGAATCGACGCAGCA 61.291 55.000 6.09 0.00 0.00 4.41
349 351 0.940833 TTGAATCGACGCAGCAACAA 59.059 45.000 0.00 0.00 0.00 2.83
367 369 1.064825 AAGGGGATTTCACGAGGTGT 58.935 50.000 0.00 0.00 34.79 4.16
520 532 2.799412 GAGCAATAGACAGATCTTGGCG 59.201 50.000 0.00 0.00 40.94 5.69
521 533 2.432146 AGCAATAGACAGATCTTGGCGA 59.568 45.455 0.00 0.00 40.94 5.54
522 534 2.799412 GCAATAGACAGATCTTGGCGAG 59.201 50.000 0.00 0.00 40.94 5.03
523 535 3.388308 CAATAGACAGATCTTGGCGAGG 58.612 50.000 0.97 0.00 40.94 4.63
524 536 1.403814 TAGACAGATCTTGGCGAGGG 58.596 55.000 0.97 0.00 40.94 4.30
525 537 1.144936 GACAGATCTTGGCGAGGGG 59.855 63.158 0.97 0.00 0.00 4.79
526 538 1.613630 ACAGATCTTGGCGAGGGGT 60.614 57.895 0.97 0.00 0.00 4.95
527 539 1.201429 ACAGATCTTGGCGAGGGGTT 61.201 55.000 0.97 0.00 0.00 4.11
528 540 0.462759 CAGATCTTGGCGAGGGGTTC 60.463 60.000 0.97 0.00 0.00 3.62
542 554 0.738762 GGGTTCGGCGAGTTTACCTC 60.739 60.000 23.29 12.74 36.80 3.85
544 556 1.626747 GTTCGGCGAGTTTACCTCTC 58.373 55.000 10.46 0.00 38.11 3.20
553 565 4.558898 GCGAGTTTACCTCTCTCTTGTCAA 60.559 45.833 0.00 0.00 38.11 3.18
567 579 0.684535 TGTCAACGGCTGGAATCTGA 59.315 50.000 0.00 0.00 0.00 3.27
571 583 0.687354 AACGGCTGGAATCTGACAGT 59.313 50.000 1.59 0.00 37.07 3.55
577 600 0.038166 TGGAATCTGACAGTTGGGGC 59.962 55.000 1.59 0.00 0.00 5.80
640 663 1.705186 CTAGAGGAGGAGGAGGAGGAG 59.295 61.905 0.00 0.00 0.00 3.69
641 664 0.998945 AGAGGAGGAGGAGGAGGAGG 60.999 65.000 0.00 0.00 0.00 4.30
642 665 0.996762 GAGGAGGAGGAGGAGGAGGA 60.997 65.000 0.00 0.00 0.00 3.71
781 804 2.045926 AGCCAGCACCGTTGATCC 60.046 61.111 0.00 0.00 0.00 3.36
828 865 4.587189 GCCTAGCTACGTGGGCCG 62.587 72.222 10.00 0.00 44.03 6.13
849 886 2.358737 CTTGGGTCCGGCTCACAC 60.359 66.667 0.00 0.00 0.00 3.82
850 887 3.164977 TTGGGTCCGGCTCACACA 61.165 61.111 0.00 0.00 0.00 3.72
1095 1151 4.214327 CCCCGCTCGCTCCTCTTC 62.214 72.222 0.00 0.00 0.00 2.87
1096 1152 4.214327 CCCGCTCGCTCCTCTTCC 62.214 72.222 0.00 0.00 0.00 3.46
1117 1173 3.417275 CTCCCGTTGCGCTCGAGAT 62.417 63.158 18.75 0.00 0.00 2.75
1118 1174 2.956964 CCCGTTGCGCTCGAGATC 60.957 66.667 18.75 7.03 0.00 2.75
1146 1206 8.388484 TCTGAAATCTCTTCTTCCTTTTTCTG 57.612 34.615 0.00 0.00 0.00 3.02
1271 1331 6.440647 TCGAGGGCAAGAATCTGGTAATATAT 59.559 38.462 0.00 0.00 0.00 0.86
1272 1332 7.618117 TCGAGGGCAAGAATCTGGTAATATATA 59.382 37.037 0.00 0.00 0.00 0.86
1273 1333 8.424918 CGAGGGCAAGAATCTGGTAATATATAT 58.575 37.037 0.00 0.00 0.00 0.86
1284 1344 5.463286 TGGTAATATATATAATCGCCGGCG 58.537 41.667 42.13 42.13 41.35 6.46
1295 1355 4.459089 GCCGGCGCTCTTCCTTCT 62.459 66.667 12.58 0.00 0.00 2.85
1308 1368 5.567025 GCTCTTCCTTCTTCGGTTTCTCTTA 60.567 44.000 0.00 0.00 0.00 2.10
1340 1400 3.448686 CTTAGGATTCGGTGCTACTGTG 58.551 50.000 0.00 0.00 29.64 3.66
1404 1464 1.368641 TGCAATGTGATACGTGCTCC 58.631 50.000 0.00 0.00 34.16 4.70
1470 1531 1.075374 AGTGAATGGGCAACTTGGCTA 59.925 47.619 14.48 9.46 43.20 3.93
1471 1532 1.474077 GTGAATGGGCAACTTGGCTAG 59.526 52.381 14.48 0.00 43.20 3.42
1472 1533 1.075374 TGAATGGGCAACTTGGCTAGT 59.925 47.619 14.48 8.26 43.20 2.57
1473 1534 1.474077 GAATGGGCAACTTGGCTAGTG 59.526 52.381 14.48 0.00 43.20 2.74
1475 1536 0.184933 TGGGCAACTTGGCTAGTGTT 59.815 50.000 14.48 0.00 43.20 3.32
1476 1537 0.598065 GGGCAACTTGGCTAGTGTTG 59.402 55.000 14.48 11.66 43.20 3.33
1478 1539 2.500229 GGCAACTTGGCTAGTGTTGTA 58.500 47.619 15.43 0.00 41.93 2.41
1479 1540 2.882137 GGCAACTTGGCTAGTGTTGTAA 59.118 45.455 15.43 0.00 41.93 2.41
1537 1638 3.873952 GGTGATTACTGCAACAGAGGATC 59.126 47.826 0.78 2.92 35.18 3.36
1668 1769 3.056107 CGAGAATCTAACACTTCCCACCA 60.056 47.826 0.00 0.00 0.00 4.17
1684 1785 0.392461 ACCACATACCGTGCATCCAC 60.392 55.000 0.00 0.00 44.91 4.02
1687 1788 0.392461 ACATACCGTGCATCCACCAC 60.392 55.000 0.00 0.00 38.79 4.16
1693 1794 2.089854 GTGCATCCACCACGACATC 58.910 57.895 0.00 0.00 35.92 3.06
1702 1803 2.093711 CCACCACGACATCAGAATACCA 60.094 50.000 0.00 0.00 0.00 3.25
1703 1804 3.432186 CCACCACGACATCAGAATACCAT 60.432 47.826 0.00 0.00 0.00 3.55
1711 1812 5.856986 CGACATCAGAATACCATAAGTACGG 59.143 44.000 0.00 0.00 32.46 4.02
1737 1838 7.520451 ACGAGCACATATTACTTGTAGGATA 57.480 36.000 0.00 0.00 0.00 2.59
1738 1839 7.368833 ACGAGCACATATTACTTGTAGGATAC 58.631 38.462 0.00 0.00 43.42 2.24
1807 1908 2.708051 TCTTGGAGAGCTCAAGCAATG 58.292 47.619 17.77 1.21 45.16 2.82
1894 1997 1.745890 GGGACCAAAACAACCCTGC 59.254 57.895 0.00 0.00 39.28 4.85
1901 2004 2.896685 CCAAAACAACCCTGCCAAGATA 59.103 45.455 0.00 0.00 0.00 1.98
2129 2232 1.618487 TGCTGGATTTGCACATGTCA 58.382 45.000 0.00 0.00 35.31 3.58
2149 2252 6.451393 TGTCATAAGCCCATAACAAACAAAC 58.549 36.000 0.00 0.00 0.00 2.93
2152 2255 1.056869 GCCCATAACAAACAAACGCG 58.943 50.000 3.53 3.53 0.00 6.01
2153 2256 1.692296 CCCATAACAAACAAACGCGG 58.308 50.000 12.47 0.00 0.00 6.46
2154 2257 1.267261 CCCATAACAAACAAACGCGGA 59.733 47.619 12.47 0.00 0.00 5.54
2155 2258 2.287668 CCCATAACAAACAAACGCGGAA 60.288 45.455 12.47 0.00 0.00 4.30
2182 2285 8.097038 TGAATGACTCAGTTAGATAAAAGCAGT 58.903 33.333 0.00 0.00 0.00 4.40
2263 2366 4.023792 TGCACAATGCTTGTCTTTCTACAG 60.024 41.667 2.02 0.00 45.31 2.74
2264 2367 4.023707 GCACAATGCTTGTCTTTCTACAGT 60.024 41.667 0.00 0.00 43.23 3.55
2303 2406 3.979911 AGATGTTGCATGTTTATGGGGA 58.020 40.909 0.00 0.00 34.79 4.81
2460 2563 3.641434 ACAGGTGGGATCTTCTCAATG 57.359 47.619 0.00 0.00 0.00 2.82
2535 2638 7.364673 GGGTATGATACTTTTGGCCATCTTTTT 60.365 37.037 6.09 0.00 0.00 1.94
2679 2782 5.735733 AGTAAGGGTCTCTAGAGGAATGA 57.264 43.478 19.67 0.00 0.00 2.57
2867 2970 5.283294 TGCAATTGTTTGTGAACATCTGAG 58.717 37.500 7.40 0.00 44.71 3.35
2889 2992 6.095860 TGAGTTTTTCATGATGCCTGGATTAG 59.904 38.462 0.00 0.00 0.00 1.73
3035 3138 5.049680 GTCTCGTGTTGCTGGAATTTTCTTA 60.050 40.000 0.00 0.00 0.00 2.10
3040 3143 6.863126 CGTGTTGCTGGAATTTTCTTATTCTT 59.137 34.615 0.00 0.00 35.37 2.52
3061 3164 7.377766 TCTTGAGCACTATGTTTTATGTTCC 57.622 36.000 0.00 0.00 0.00 3.62
3098 3201 6.381420 AGTCATGCTACTATAGGTGTTTCTGT 59.619 38.462 4.43 0.00 0.00 3.41
3104 3207 7.985184 TGCTACTATAGGTGTTTCTGTTAATGG 59.015 37.037 4.43 0.00 0.00 3.16
3302 3497 3.944422 ATAACAAACGAAGCGCCATAG 57.056 42.857 2.29 0.00 0.00 2.23
3353 3548 0.833287 CTACCCACTAGCTGGCATGT 59.167 55.000 0.00 0.00 39.01 3.21
3354 3549 0.541392 TACCCACTAGCTGGCATGTG 59.459 55.000 0.00 9.66 39.01 3.21
3364 3559 3.359033 AGCTGGCATGTGAATGTATTGT 58.641 40.909 0.00 0.00 0.00 2.71
3424 3619 6.148811 ACCACGTCTATTTTGTAATTGGACTG 59.851 38.462 0.00 0.00 0.00 3.51
3531 3726 5.003096 TGGTATGCCTGATCTATGAGAGA 57.997 43.478 0.16 0.00 35.42 3.10
3541 3736 5.380900 TGATCTATGAGAGAAGACGTCCAT 58.619 41.667 13.01 9.78 37.85 3.41
3547 3742 1.895798 AGAGAAGACGTCCATTGCTGA 59.104 47.619 13.01 0.00 0.00 4.26
3550 3745 2.300152 AGAAGACGTCCATTGCTGAGAA 59.700 45.455 13.01 0.00 0.00 2.87
3566 3763 5.931146 TGCTGAGAATGAAAGAGAAAGAGTC 59.069 40.000 0.00 0.00 0.00 3.36
3570 3767 4.528596 AGAATGAAAGAGAAAGAGTCGGGA 59.471 41.667 0.00 0.00 0.00 5.14
3632 3831 4.161565 ACTCTGCGGTTATTATGTCAGGAA 59.838 41.667 0.00 0.00 0.00 3.36
3674 3873 4.084849 CGAATAAAACTAGCCAGCATCTCG 60.085 45.833 0.00 0.00 0.00 4.04
3709 3908 1.079490 TCTGTCCCTGAAGACCCTGAT 59.921 52.381 0.00 0.00 35.83 2.90
3732 3931 3.803231 TGAATGTTGTGCATCTTGTTTGC 59.197 39.130 0.00 0.00 36.67 3.68
3733 3932 3.738830 ATGTTGTGCATCTTGTTTGCT 57.261 38.095 0.00 0.00 40.77 3.91
3770 3969 1.378119 GGCCCCAAGAAAGTACGGG 60.378 63.158 0.00 0.00 38.52 5.28
3785 3987 4.047125 GGGCCAGGCTGCTGGTTA 62.047 66.667 12.43 0.00 45.87 2.85
3896 4098 5.262588 AGGAAAAATTGCGACAAAGTCTT 57.737 34.783 0.00 0.00 0.00 3.01
4162 4394 7.599630 TCGTAACACAAACTCTTAACAAGTT 57.400 32.000 0.00 0.00 38.59 2.66
4192 4424 8.044060 TGAAAGGAATTCATTTAGTAGCACTG 57.956 34.615 17.34 0.00 43.08 3.66
4203 4435 1.344763 AGTAGCACTGTGAACCCACTC 59.655 52.381 12.86 0.00 43.55 3.51
4212 4445 3.815401 CTGTGAACCCACTCGAAGAAAAT 59.185 43.478 0.00 0.00 43.55 1.82
4218 4451 7.094762 GTGAACCCACTCGAAGAAAATATTCTT 60.095 37.037 3.62 3.62 46.44 2.52
4247 4480 7.303634 ACTATTTACAGCCGTGATAAAACAG 57.696 36.000 0.00 0.00 0.00 3.16
4302 4537 1.691976 TCCACAATCCGCTAGTATGGG 59.308 52.381 0.00 0.00 0.00 4.00
4309 4545 5.663106 ACAATCCGCTAGTATGGGATATCAT 59.337 40.000 4.83 0.00 39.60 2.45
4312 4548 4.122776 CCGCTAGTATGGGATATCATTGC 58.877 47.826 4.83 0.00 0.00 3.56
4314 4550 4.440112 CGCTAGTATGGGATATCATTGCGA 60.440 45.833 4.83 0.00 35.60 5.10
4360 4596 4.649088 TCATTATCTTCACCATCGTCGT 57.351 40.909 0.00 0.00 0.00 4.34
4361 4597 5.006153 TCATTATCTTCACCATCGTCGTT 57.994 39.130 0.00 0.00 0.00 3.85
4389 4625 4.582869 TGCTGAGCACATCAAATACTTCT 58.417 39.130 1.40 0.00 37.52 2.85
4417 4653 6.726299 TGCTAGAACTAATATGACCTATGCCT 59.274 38.462 0.00 0.00 0.00 4.75
4423 4659 5.717178 ACTAATATGACCTATGCCTGACGAT 59.283 40.000 0.00 0.00 0.00 3.73
4430 4666 2.101415 CCTATGCCTGACGATGAACAGA 59.899 50.000 0.00 0.00 36.38 3.41
4431 4667 2.306341 ATGCCTGACGATGAACAGAG 57.694 50.000 0.00 0.00 36.38 3.35
4432 4668 0.247460 TGCCTGACGATGAACAGAGG 59.753 55.000 0.00 0.00 36.38 3.69
4433 4669 0.247736 GCCTGACGATGAACAGAGGT 59.752 55.000 0.00 0.00 36.38 3.85
4434 4670 1.476891 GCCTGACGATGAACAGAGGTA 59.523 52.381 0.00 0.00 36.38 3.08
4435 4671 2.735762 GCCTGACGATGAACAGAGGTAC 60.736 54.545 0.00 0.00 36.38 3.34
4437 4673 3.056821 CCTGACGATGAACAGAGGTACAA 60.057 47.826 0.00 0.00 36.38 2.41
4438 4674 3.909430 TGACGATGAACAGAGGTACAAC 58.091 45.455 0.00 0.00 0.00 3.32
4439 4675 3.251571 GACGATGAACAGAGGTACAACC 58.748 50.000 0.00 0.00 38.99 3.77
4452 4688 3.964909 GGTACAACCTCTGCAAAAACAG 58.035 45.455 0.00 0.00 39.12 3.16
4453 4689 3.243401 GGTACAACCTCTGCAAAAACAGG 60.243 47.826 0.00 0.00 38.26 4.00
4475 4716 4.934602 GGAGAAGAACAAGGATGAACAGAG 59.065 45.833 0.00 0.00 0.00 3.35
4476 4717 5.279708 GGAGAAGAACAAGGATGAACAGAGA 60.280 44.000 0.00 0.00 0.00 3.10
4477 4718 5.792741 AGAAGAACAAGGATGAACAGAGAG 58.207 41.667 0.00 0.00 0.00 3.20
4478 4719 4.550076 AGAACAAGGATGAACAGAGAGG 57.450 45.455 0.00 0.00 0.00 3.69
4479 4720 3.262915 AGAACAAGGATGAACAGAGAGGG 59.737 47.826 0.00 0.00 0.00 4.30
4480 4721 1.280421 ACAAGGATGAACAGAGAGGGC 59.720 52.381 0.00 0.00 0.00 5.19
4481 4722 1.280133 CAAGGATGAACAGAGAGGGCA 59.720 52.381 0.00 0.00 0.00 5.36
4482 4723 1.202330 AGGATGAACAGAGAGGGCAG 58.798 55.000 0.00 0.00 0.00 4.85
4483 4724 0.908198 GGATGAACAGAGAGGGCAGT 59.092 55.000 0.00 0.00 0.00 4.40
4484 4725 1.406614 GGATGAACAGAGAGGGCAGTG 60.407 57.143 0.00 0.00 0.00 3.66
4485 4726 0.035630 ATGAACAGAGAGGGCAGTGC 60.036 55.000 6.55 6.55 0.00 4.40
4499 4740 3.110447 GCAGTGCCAAAAATGAAAGGA 57.890 42.857 2.85 0.00 0.00 3.36
4500 4741 3.062042 GCAGTGCCAAAAATGAAAGGAG 58.938 45.455 2.85 0.00 0.00 3.69
4501 4742 3.656559 CAGTGCCAAAAATGAAAGGAGG 58.343 45.455 0.00 0.00 0.00 4.30
4502 4743 2.037641 AGTGCCAAAAATGAAAGGAGGC 59.962 45.455 0.00 0.00 40.93 4.70
4503 4744 1.000731 TGCCAAAAATGAAAGGAGGCG 59.999 47.619 0.00 0.00 43.35 5.52
4504 4745 1.672737 GCCAAAAATGAAAGGAGGCGG 60.673 52.381 0.00 0.00 0.00 6.13
4505 4746 1.066929 CCAAAAATGAAAGGAGGCGGG 60.067 52.381 0.00 0.00 0.00 6.13
4506 4747 1.066929 CAAAAATGAAAGGAGGCGGGG 60.067 52.381 0.00 0.00 0.00 5.73
4507 4748 1.257750 AAAATGAAAGGAGGCGGGGC 61.258 55.000 0.00 0.00 0.00 5.80
4508 4749 2.439553 AAATGAAAGGAGGCGGGGCA 62.440 55.000 0.00 0.00 0.00 5.36
4509 4750 2.439553 AATGAAAGGAGGCGGGGCAA 62.440 55.000 0.00 0.00 0.00 4.52
4510 4751 2.282887 GAAAGGAGGCGGGGCAAA 60.283 61.111 0.00 0.00 0.00 3.68
4511 4752 1.906333 GAAAGGAGGCGGGGCAAAA 60.906 57.895 0.00 0.00 0.00 2.44
4512 4753 1.229177 AAAGGAGGCGGGGCAAAAT 60.229 52.632 0.00 0.00 0.00 1.82
4513 4754 1.543944 AAAGGAGGCGGGGCAAAATG 61.544 55.000 0.00 0.00 0.00 2.32
4514 4755 3.460868 GGAGGCGGGGCAAAATGG 61.461 66.667 0.00 0.00 0.00 3.16
4515 4756 3.460868 GAGGCGGGGCAAAATGGG 61.461 66.667 0.00 0.00 0.00 4.00
4516 4757 4.315264 AGGCGGGGCAAAATGGGT 62.315 61.111 0.00 0.00 0.00 4.51
4517 4758 2.363147 GGCGGGGCAAAATGGGTA 60.363 61.111 0.00 0.00 0.00 3.69
4518 4759 1.985116 GGCGGGGCAAAATGGGTAA 60.985 57.895 0.00 0.00 0.00 2.85
4519 4760 1.334384 GGCGGGGCAAAATGGGTAAT 61.334 55.000 0.00 0.00 0.00 1.89
4520 4761 1.404843 GCGGGGCAAAATGGGTAATA 58.595 50.000 0.00 0.00 0.00 0.98
4521 4762 1.757699 GCGGGGCAAAATGGGTAATAA 59.242 47.619 0.00 0.00 0.00 1.40
4522 4763 2.168728 GCGGGGCAAAATGGGTAATAAA 59.831 45.455 0.00 0.00 0.00 1.40
4523 4764 3.739830 GCGGGGCAAAATGGGTAATAAAG 60.740 47.826 0.00 0.00 0.00 1.85
4524 4765 3.702045 CGGGGCAAAATGGGTAATAAAGA 59.298 43.478 0.00 0.00 0.00 2.52
4525 4766 4.160626 CGGGGCAAAATGGGTAATAAAGAA 59.839 41.667 0.00 0.00 0.00 2.52
4526 4767 5.337652 CGGGGCAAAATGGGTAATAAAGAAA 60.338 40.000 0.00 0.00 0.00 2.52
4527 4768 6.477253 GGGGCAAAATGGGTAATAAAGAAAA 58.523 36.000 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 71 4.889832 TCTCCGTAGAAGAATTACGTCC 57.110 45.455 0.00 0.00 41.61 4.79
71 72 9.460906 AATTAATCTCCGTAGAAGAATTACGTC 57.539 33.333 0.00 0.00 41.61 4.34
103 105 4.309099 TGCTTTTCTCCAATCATTTGCAC 58.691 39.130 0.00 0.00 0.00 4.57
141 143 1.914634 CATCGTAGCATATCCCGCTC 58.085 55.000 0.00 0.00 40.96 5.03
174 176 0.605319 TGGCCAGTCGCTTTACTTGG 60.605 55.000 0.00 0.00 37.74 3.61
175 177 1.453155 ATGGCCAGTCGCTTTACTTG 58.547 50.000 13.05 0.00 37.74 3.16
176 178 2.027561 TGTATGGCCAGTCGCTTTACTT 60.028 45.455 13.05 0.00 37.74 2.24
177 179 1.553248 TGTATGGCCAGTCGCTTTACT 59.447 47.619 13.05 0.00 37.74 2.24
178 180 2.018542 TGTATGGCCAGTCGCTTTAC 57.981 50.000 13.05 7.57 37.74 2.01
179 181 3.639561 TCTATGTATGGCCAGTCGCTTTA 59.360 43.478 13.05 0.00 37.74 1.85
180 182 2.434336 TCTATGTATGGCCAGTCGCTTT 59.566 45.455 13.05 0.00 37.74 3.51
200 202 4.609336 GCGTCGATTGCTTTATCCAATCTC 60.609 45.833 11.06 5.04 43.90 2.75
220 222 3.263941 GGATGCGTCCTTTTGCGT 58.736 55.556 18.25 0.00 41.60 5.24
232 234 1.250840 AACCTGGGCGAAAAGGATGC 61.251 55.000 0.00 0.00 37.01 3.91
267 269 2.829384 TTTCTCCGGCTTGGGCAGT 61.829 57.895 0.00 0.00 40.87 4.40
300 302 1.968017 CTTGGGCTTGCTGCTTCGA 60.968 57.895 0.00 0.00 42.39 3.71
343 345 1.200020 CTCGTGAAATCCCCTTGTTGC 59.800 52.381 0.00 0.00 0.00 4.17
344 346 1.812571 CCTCGTGAAATCCCCTTGTTG 59.187 52.381 0.00 0.00 0.00 3.33
345 347 1.423921 ACCTCGTGAAATCCCCTTGTT 59.576 47.619 0.00 0.00 0.00 2.83
349 351 1.003233 GAACACCTCGTGAAATCCCCT 59.997 52.381 0.00 0.00 36.96 4.79
370 372 2.219562 CGCCGACGAACGTGGATAC 61.220 63.158 10.55 0.34 43.93 2.24
439 441 3.865830 GCGCTAGCTTGTTCCGGC 61.866 66.667 13.93 1.92 41.01 6.13
520 532 0.738762 GTAAACTCGCCGAACCCCTC 60.739 60.000 0.00 0.00 0.00 4.30
521 533 1.294459 GTAAACTCGCCGAACCCCT 59.706 57.895 0.00 0.00 0.00 4.79
522 534 1.742880 GGTAAACTCGCCGAACCCC 60.743 63.158 0.00 0.00 0.00 4.95
523 535 0.738762 GAGGTAAACTCGCCGAACCC 60.739 60.000 2.20 0.00 36.29 4.11
524 536 2.746997 GAGGTAAACTCGCCGAACC 58.253 57.895 0.00 0.00 36.29 3.62
542 554 0.318441 TCCAGCCGTTGACAAGAGAG 59.682 55.000 0.00 0.00 0.00 3.20
544 556 1.734465 GATTCCAGCCGTTGACAAGAG 59.266 52.381 0.00 0.00 0.00 2.85
553 565 0.687354 AACTGTCAGATTCCAGCCGT 59.313 50.000 6.91 0.00 31.76 5.68
602 625 3.925453 GCTAGGGCTAAGCTGATCC 57.075 57.895 0.00 0.00 35.22 3.36
640 663 1.153469 CTCGCCCAGCTCTTCTTCC 60.153 63.158 0.00 0.00 0.00 3.46
641 664 1.153469 CCTCGCCCAGCTCTTCTTC 60.153 63.158 0.00 0.00 0.00 2.87
642 665 1.893919 GACCTCGCCCAGCTCTTCTT 61.894 60.000 0.00 0.00 0.00 2.52
804 827 4.951963 CGTAGCTAGGCGGCAGGC 62.952 72.222 13.08 14.86 44.19 4.85
805 828 3.528370 ACGTAGCTAGGCGGCAGG 61.528 66.667 13.08 4.08 34.17 4.85
806 829 2.278857 CACGTAGCTAGGCGGCAG 60.279 66.667 13.08 7.92 34.17 4.85
807 830 3.833645 CCACGTAGCTAGGCGGCA 61.834 66.667 13.08 0.00 34.17 5.69
808 831 4.587189 CCCACGTAGCTAGGCGGC 62.587 72.222 13.84 0.00 0.00 6.53
809 832 4.587189 GCCCACGTAGCTAGGCGG 62.587 72.222 13.25 12.90 35.30 6.13
810 833 4.587189 GGCCCACGTAGCTAGGCG 62.587 72.222 13.25 7.74 46.75 5.52
843 880 1.534163 CTGGCATGACAAGTGTGTGAG 59.466 52.381 1.11 0.00 38.41 3.51
845 882 1.311859 ACTGGCATGACAAGTGTGTG 58.688 50.000 1.11 0.00 38.41 3.82
846 883 2.057137 AACTGGCATGACAAGTGTGT 57.943 45.000 1.11 0.00 42.10 3.72
849 886 2.606308 GCAGAAACTGGCATGACAAGTG 60.606 50.000 1.11 0.00 31.21 3.16
850 887 1.610522 GCAGAAACTGGCATGACAAGT 59.389 47.619 1.11 0.00 31.21 3.16
1081 1137 4.560856 CGGGAAGAGGAGCGAGCG 62.561 72.222 0.00 0.00 0.00 5.03
1082 1138 4.882396 GCGGGAAGAGGAGCGAGC 62.882 72.222 0.00 0.00 0.00 5.03
1084 1140 3.141488 GAGCGGGAAGAGGAGCGA 61.141 66.667 0.00 0.00 34.34 4.93
1086 1142 3.855853 GGGAGCGGGAAGAGGAGC 61.856 72.222 0.00 0.00 0.00 4.70
1088 1144 3.899545 AACGGGAGCGGGAAGAGGA 62.900 63.158 0.00 0.00 0.00 3.71
1091 1147 4.388499 GCAACGGGAGCGGGAAGA 62.388 66.667 0.00 0.00 0.00 2.87
1117 1173 7.552050 AAAGGAAGAAGAGATTTCAGAGAGA 57.448 36.000 0.00 0.00 0.00 3.10
1118 1174 8.620116 AAAAAGGAAGAAGAGATTTCAGAGAG 57.380 34.615 0.00 0.00 0.00 3.20
1146 1206 0.810648 TGGCGCCAATTTCATCAGAC 59.189 50.000 30.74 0.00 0.00 3.51
1281 1341 1.811679 CCGAAGAAGGAAGAGCGCC 60.812 63.158 2.29 0.00 0.00 6.53
1284 1344 2.997303 GAGAAACCGAAGAAGGAAGAGC 59.003 50.000 0.00 0.00 34.73 4.09
1295 1355 5.523916 GCAATAGCTGATAAGAGAAACCGAA 59.476 40.000 0.00 0.00 37.91 4.30
1340 1400 1.754803 TCGATACTCCCATGACACCAC 59.245 52.381 0.00 0.00 0.00 4.16
1404 1464 1.010935 CACCTGTAGTGCAGCACTCG 61.011 60.000 31.58 19.52 41.21 4.18
1470 1531 4.081420 AGCATAGCAGCTACTTACAACACT 60.081 41.667 3.59 0.00 44.50 3.55
1471 1532 4.033358 CAGCATAGCAGCTACTTACAACAC 59.967 45.833 3.59 0.00 44.54 3.32
1472 1533 4.183865 CAGCATAGCAGCTACTTACAACA 58.816 43.478 3.59 0.00 44.54 3.33
1473 1534 3.001736 GCAGCATAGCAGCTACTTACAAC 59.998 47.826 3.59 0.00 44.54 3.32
1475 1536 2.168313 TGCAGCATAGCAGCTACTTACA 59.832 45.455 3.59 0.00 44.54 2.41
1476 1537 2.826428 TGCAGCATAGCAGCTACTTAC 58.174 47.619 3.59 0.00 44.54 2.34
1496 1597 3.192001 CACCAAATAACATCTGTGCAGCT 59.808 43.478 0.00 0.00 0.00 4.24
1497 1598 3.191162 TCACCAAATAACATCTGTGCAGC 59.809 43.478 0.00 0.00 0.00 5.25
1546 1647 5.996669 TCATTCATGACAATCGAATGGAG 57.003 39.130 18.23 0.00 43.94 3.86
1547 1648 6.056884 TCATCATTCATGACAATCGAATGGA 58.943 36.000 18.23 10.52 43.94 3.41
1658 1759 0.323629 CACGGTATGTGGTGGGAAGT 59.676 55.000 0.00 0.00 45.21 3.01
1668 1769 0.392461 GTGGTGGATGCACGGTATGT 60.392 55.000 11.52 0.00 0.00 2.29
1684 1785 5.601662 ACTTATGGTATTCTGATGTCGTGG 58.398 41.667 0.00 0.00 0.00 4.94
1687 1788 5.856986 CCGTACTTATGGTATTCTGATGTCG 59.143 44.000 0.00 0.00 32.56 4.35
1688 1789 6.978338 TCCGTACTTATGGTATTCTGATGTC 58.022 40.000 0.00 0.00 33.98 3.06
1693 1794 5.824429 TCGTTCCGTACTTATGGTATTCTG 58.176 41.667 0.00 0.00 33.98 3.02
1702 1803 3.795623 ATGTGCTCGTTCCGTACTTAT 57.204 42.857 0.00 0.00 0.00 1.73
1703 1804 4.906065 ATATGTGCTCGTTCCGTACTTA 57.094 40.909 0.00 0.00 0.00 2.24
1711 1812 6.270815 TCCTACAAGTAATATGTGCTCGTTC 58.729 40.000 0.00 0.00 32.27 3.95
1725 1826 4.030913 AGCAGGCAAGTATCCTACAAGTA 58.969 43.478 0.00 0.00 31.52 2.24
1729 1830 2.837591 TCAAGCAGGCAAGTATCCTACA 59.162 45.455 0.00 0.00 31.52 2.74
1737 1838 2.799017 TGATGATTCAAGCAGGCAAGT 58.201 42.857 0.00 0.00 0.00 3.16
1738 1839 5.707242 ATATGATGATTCAAGCAGGCAAG 57.293 39.130 0.00 0.00 34.96 4.01
1746 1847 9.473640 CGACCTCCATATATATGATGATTCAAG 57.526 37.037 21.97 4.32 35.75 3.02
1747 1848 8.424133 CCGACCTCCATATATATGATGATTCAA 58.576 37.037 21.97 0.00 35.75 2.69
1750 1851 6.556495 AGCCGACCTCCATATATATGATGATT 59.444 38.462 21.97 4.36 35.75 2.57
1814 1915 3.550030 CCTTTCAAACACGCCTTAAGTGG 60.550 47.826 0.97 0.00 43.41 4.00
1894 1997 4.530388 CACAACGCTGCAATATATCTTGG 58.470 43.478 0.00 0.00 0.00 3.61
2121 2224 5.833406 TTGTTATGGGCTTATGACATGTG 57.167 39.130 1.15 0.00 0.00 3.21
2129 2232 4.490743 GCGTTTGTTTGTTATGGGCTTAT 58.509 39.130 0.00 0.00 0.00 1.73
2149 2252 1.645034 ACTGAGTCATTCATTCCGCG 58.355 50.000 0.00 0.00 34.68 6.46
2153 2256 9.928236 GCTTTTATCTAACTGAGTCATTCATTC 57.072 33.333 0.00 0.00 34.68 2.67
2154 2257 9.453572 TGCTTTTATCTAACTGAGTCATTCATT 57.546 29.630 0.00 0.00 34.68 2.57
2155 2258 9.107177 CTGCTTTTATCTAACTGAGTCATTCAT 57.893 33.333 0.00 0.00 34.68 2.57
2182 2285 5.598005 ACTTCCTCACCATGTTCAAATCAAA 59.402 36.000 0.00 0.00 0.00 2.69
2303 2406 4.705023 GCAATTGTCCTGTTACCCAGTATT 59.295 41.667 7.40 0.00 39.74 1.89
2679 2782 0.321919 ATGACAGCACCAGACGCATT 60.322 50.000 0.00 0.00 0.00 3.56
2735 2838 3.118738 GGAACATACGAGATGTGGGTCTT 60.119 47.826 8.18 0.00 31.80 3.01
2867 2970 6.455360 TCTAATCCAGGCATCATGAAAAAC 57.545 37.500 0.00 0.00 0.00 2.43
2889 2992 7.044798 AGGTCAGATTAGTGTTAGCTCAATTC 58.955 38.462 0.00 0.00 0.00 2.17
2968 3071 5.885230 TGTATGAAGTTGAGATTGGCTTG 57.115 39.130 0.00 0.00 0.00 4.01
2969 3072 6.006449 AGTTGTATGAAGTTGAGATTGGCTT 58.994 36.000 0.00 0.00 0.00 4.35
2970 3073 5.564550 AGTTGTATGAAGTTGAGATTGGCT 58.435 37.500 0.00 0.00 0.00 4.75
2971 3074 5.886960 AGTTGTATGAAGTTGAGATTGGC 57.113 39.130 0.00 0.00 0.00 4.52
3035 3138 8.462016 GGAACATAAAACATAGTGCTCAAGAAT 58.538 33.333 0.00 0.00 0.00 2.40
3040 3143 4.634004 CCGGAACATAAAACATAGTGCTCA 59.366 41.667 0.00 0.00 0.00 4.26
3061 3164 1.067985 AGCATGACTATCGCAGATCCG 60.068 52.381 0.00 0.00 45.12 4.18
3098 3201 3.873952 GCAAACAAGCCAAACACCATTAA 59.126 39.130 0.00 0.00 0.00 1.40
3104 3207 0.652071 GCAGCAAACAAGCCAAACAC 59.348 50.000 0.00 0.00 34.23 3.32
3168 3363 8.947115 AGAATTTATTCTGCGCTTTTTACTACT 58.053 29.630 9.73 0.00 44.91 2.57
3281 3476 3.805422 CCTATGGCGCTTCGTTTGTTATA 59.195 43.478 7.64 0.00 0.00 0.98
3353 3548 6.366061 GCTCATATAGCGACACAATACATTCA 59.634 38.462 0.00 0.00 42.53 2.57
3354 3549 6.756176 GCTCATATAGCGACACAATACATTC 58.244 40.000 0.00 0.00 42.53 2.67
3394 3589 8.126700 CCAATTACAAAATAGACGTGGTATTCC 58.873 37.037 0.00 0.00 0.00 3.01
3424 3619 6.034591 CCATCTGCATCAGTCAAAGAAAATC 58.965 40.000 0.00 0.00 32.61 2.17
3531 3726 2.839486 TTCTCAGCAATGGACGTCTT 57.161 45.000 16.46 0.00 0.00 3.01
3541 3736 6.294473 ACTCTTTCTCTTTCATTCTCAGCAA 58.706 36.000 0.00 0.00 0.00 3.91
3547 3742 4.528596 TCCCGACTCTTTCTCTTTCATTCT 59.471 41.667 0.00 0.00 0.00 2.40
3550 3745 4.891992 TTCCCGACTCTTTCTCTTTCAT 57.108 40.909 0.00 0.00 0.00 2.57
3566 3763 6.540189 GGATGGATAGATCACAAATATTCCCG 59.460 42.308 0.00 0.00 0.00 5.14
3632 3831 2.942376 TCGTGAACAAATGTTGAGTGCT 59.058 40.909 3.05 0.00 38.56 4.40
3709 3908 4.270566 GCAAACAAGATGCACAACATTCAA 59.729 37.500 0.00 0.00 43.29 2.69
3732 3931 5.450965 GGGCCTCATTCATACAATCAAACAG 60.451 44.000 0.84 0.00 0.00 3.16
3733 3932 4.402155 GGGCCTCATTCATACAATCAAACA 59.598 41.667 0.84 0.00 0.00 2.83
3810 4012 8.470805 TGCTGGAAAAACAAAGAAATTACAGTA 58.529 29.630 0.00 0.00 0.00 2.74
3822 4024 2.224257 GGAGCCATGCTGGAAAAACAAA 60.224 45.455 6.40 0.00 40.96 2.83
3875 4077 5.518487 TGAAAGACTTTGTCGCAATTTTTCC 59.482 36.000 4.85 0.00 37.67 3.13
3881 4083 6.308766 GCATAAATGAAAGACTTTGTCGCAAT 59.691 34.615 4.85 0.00 37.67 3.56
3896 4098 6.347644 CGACTGAAACAGACAGCATAAATGAA 60.348 38.462 5.76 0.00 38.74 2.57
4192 4424 6.371825 AGAATATTTTCTTCGAGTGGGTTCAC 59.628 38.462 0.00 0.00 39.18 3.18
4212 4445 7.064134 CACGGCTGTAAATAGTTGTGAAGAATA 59.936 37.037 0.00 0.00 31.18 1.75
4218 4451 4.260139 TCACGGCTGTAAATAGTTGTGA 57.740 40.909 0.00 0.00 34.16 3.58
4219 4452 6.656314 TTATCACGGCTGTAAATAGTTGTG 57.344 37.500 0.00 0.00 0.00 3.33
4220 4453 7.173562 TGTTTTATCACGGCTGTAAATAGTTGT 59.826 33.333 0.00 0.00 0.00 3.32
4223 4456 6.877322 ACTGTTTTATCACGGCTGTAAATAGT 59.123 34.615 12.65 12.65 0.00 2.12
4224 4457 7.277981 AGACTGTTTTATCACGGCTGTAAATAG 59.722 37.037 11.66 11.66 0.00 1.73
4247 4480 9.132521 CAAATTCTTGTGGAAATGAATACAGAC 57.867 33.333 0.00 0.00 37.49 3.51
4302 4537 5.163874 GCCTCTTTCAGATCGCAATGATATC 60.164 44.000 0.00 0.00 37.47 1.63
4309 4545 2.079158 CAAGCCTCTTTCAGATCGCAA 58.921 47.619 0.00 0.00 0.00 4.85
4312 4548 2.005451 CACCAAGCCTCTTTCAGATCG 58.995 52.381 0.00 0.00 0.00 3.69
4314 4550 2.617532 GCTCACCAAGCCTCTTTCAGAT 60.618 50.000 0.00 0.00 45.92 2.90
4344 4580 3.190079 CATCAACGACGATGGTGAAGAT 58.810 45.455 12.58 0.00 39.33 2.40
4360 4596 2.506444 TGATGTGCTCAGCAACATCAA 58.494 42.857 28.21 18.16 44.80 2.57
4361 4597 2.188062 TGATGTGCTCAGCAACATCA 57.812 45.000 27.34 27.34 45.15 3.07
4389 4625 7.872993 GCATAGGTCATATTAGTTCTAGCACAA 59.127 37.037 0.00 0.00 0.00 3.33
4405 4641 2.319844 TCATCGTCAGGCATAGGTCAT 58.680 47.619 0.00 0.00 0.00 3.06
4408 4644 1.831106 TGTTCATCGTCAGGCATAGGT 59.169 47.619 0.00 0.00 0.00 3.08
4417 4653 3.305813 GGTTGTACCTCTGTTCATCGTCA 60.306 47.826 0.00 0.00 34.73 4.35
4431 4667 3.243401 CCTGTTTTTGCAGAGGTTGTACC 60.243 47.826 0.00 0.00 38.70 3.34
4432 4668 3.630312 TCCTGTTTTTGCAGAGGTTGTAC 59.370 43.478 0.00 0.00 38.70 2.90
4433 4669 3.882888 CTCCTGTTTTTGCAGAGGTTGTA 59.117 43.478 0.00 0.00 38.70 2.41
4434 4670 2.689983 CTCCTGTTTTTGCAGAGGTTGT 59.310 45.455 0.00 0.00 38.70 3.32
4435 4671 2.951642 TCTCCTGTTTTTGCAGAGGTTG 59.048 45.455 0.00 0.00 38.70 3.77
4437 4673 3.117888 TCTTCTCCTGTTTTTGCAGAGGT 60.118 43.478 0.00 0.00 38.70 3.85
4438 4674 3.480470 TCTTCTCCTGTTTTTGCAGAGG 58.520 45.455 0.00 0.00 38.70 3.69
4439 4675 4.336433 TGTTCTTCTCCTGTTTTTGCAGAG 59.664 41.667 0.00 0.00 38.70 3.35
4440 4676 4.269183 TGTTCTTCTCCTGTTTTTGCAGA 58.731 39.130 0.00 0.00 38.70 4.26
4441 4677 4.637483 TGTTCTTCTCCTGTTTTTGCAG 57.363 40.909 0.00 0.00 36.31 4.41
4443 4679 4.097892 TCCTTGTTCTTCTCCTGTTTTTGC 59.902 41.667 0.00 0.00 0.00 3.68
4444 4680 5.835113 TCCTTGTTCTTCTCCTGTTTTTG 57.165 39.130 0.00 0.00 0.00 2.44
4446 4682 5.694995 TCATCCTTGTTCTTCTCCTGTTTT 58.305 37.500 0.00 0.00 0.00 2.43
4447 4683 5.310409 TCATCCTTGTTCTTCTCCTGTTT 57.690 39.130 0.00 0.00 0.00 2.83
4448 4684 4.982241 TCATCCTTGTTCTTCTCCTGTT 57.018 40.909 0.00 0.00 0.00 3.16
4449 4685 4.103153 TGTTCATCCTTGTTCTTCTCCTGT 59.897 41.667 0.00 0.00 0.00 4.00
4450 4686 4.645535 TGTTCATCCTTGTTCTTCTCCTG 58.354 43.478 0.00 0.00 0.00 3.86
4451 4687 4.594920 TCTGTTCATCCTTGTTCTTCTCCT 59.405 41.667 0.00 0.00 0.00 3.69
4452 4688 4.899502 TCTGTTCATCCTTGTTCTTCTCC 58.100 43.478 0.00 0.00 0.00 3.71
4453 4689 5.788450 TCTCTGTTCATCCTTGTTCTTCTC 58.212 41.667 0.00 0.00 0.00 2.87
4479 4720 3.062042 CTCCTTTCATTTTTGGCACTGC 58.938 45.455 0.00 0.00 0.00 4.40
4480 4721 3.656559 CCTCCTTTCATTTTTGGCACTG 58.343 45.455 0.00 0.00 0.00 3.66
4481 4722 2.037641 GCCTCCTTTCATTTTTGGCACT 59.962 45.455 0.00 0.00 38.79 4.40
4482 4723 2.416747 GCCTCCTTTCATTTTTGGCAC 58.583 47.619 0.00 0.00 38.79 5.01
4483 4724 1.000731 CGCCTCCTTTCATTTTTGGCA 59.999 47.619 0.00 0.00 38.87 4.92
4484 4725 1.672737 CCGCCTCCTTTCATTTTTGGC 60.673 52.381 0.00 0.00 35.94 4.52
4485 4726 1.066929 CCCGCCTCCTTTCATTTTTGG 60.067 52.381 0.00 0.00 0.00 3.28
4486 4727 1.066929 CCCCGCCTCCTTTCATTTTTG 60.067 52.381 0.00 0.00 0.00 2.44
4487 4728 1.266178 CCCCGCCTCCTTTCATTTTT 58.734 50.000 0.00 0.00 0.00 1.94
4488 4729 1.257750 GCCCCGCCTCCTTTCATTTT 61.258 55.000 0.00 0.00 0.00 1.82
4489 4730 1.682344 GCCCCGCCTCCTTTCATTT 60.682 57.895 0.00 0.00 0.00 2.32
4490 4731 2.043953 GCCCCGCCTCCTTTCATT 60.044 61.111 0.00 0.00 0.00 2.57
4491 4732 2.439553 TTTGCCCCGCCTCCTTTCAT 62.440 55.000 0.00 0.00 0.00 2.57
4492 4733 2.648613 TTTTGCCCCGCCTCCTTTCA 62.649 55.000 0.00 0.00 0.00 2.69
4493 4734 1.257750 ATTTTGCCCCGCCTCCTTTC 61.258 55.000 0.00 0.00 0.00 2.62
4494 4735 1.229177 ATTTTGCCCCGCCTCCTTT 60.229 52.632 0.00 0.00 0.00 3.11
4495 4736 1.984026 CATTTTGCCCCGCCTCCTT 60.984 57.895 0.00 0.00 0.00 3.36
4496 4737 2.362889 CATTTTGCCCCGCCTCCT 60.363 61.111 0.00 0.00 0.00 3.69
4497 4738 3.460868 CCATTTTGCCCCGCCTCC 61.461 66.667 0.00 0.00 0.00 4.30
4498 4739 2.847366 TACCCATTTTGCCCCGCCTC 62.847 60.000 0.00 0.00 0.00 4.70
4499 4740 2.448473 TTACCCATTTTGCCCCGCCT 62.448 55.000 0.00 0.00 0.00 5.52
4500 4741 1.334384 ATTACCCATTTTGCCCCGCC 61.334 55.000 0.00 0.00 0.00 6.13
4501 4742 1.404843 TATTACCCATTTTGCCCCGC 58.595 50.000 0.00 0.00 0.00 6.13
4502 4743 3.702045 TCTTTATTACCCATTTTGCCCCG 59.298 43.478 0.00 0.00 0.00 5.73
4503 4744 5.685520 TTCTTTATTACCCATTTTGCCCC 57.314 39.130 0.00 0.00 0.00 5.80


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.