Multiple sequence alignment - TraesCS4A01G184700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G184700 chr4A 100.000 3959 0 0 1 3959 463926340 463922382 0.000000e+00 7312
1 TraesCS4A01G184700 chr4B 92.009 3579 136 51 1 3477 173966136 173969666 0.000000e+00 4887
2 TraesCS4A01G184700 chr4B 83.478 230 16 5 3730 3959 173969729 173969936 1.120000e-45 195
3 TraesCS4A01G184700 chr4B 85.821 134 16 1 3731 3861 173969661 173969794 5.330000e-29 139
4 TraesCS4A01G184700 chr4D 95.246 1851 65 14 1626 3474 113235912 113237741 0.000000e+00 2909
5 TraesCS4A01G184700 chr4D 91.513 1956 72 35 16 1896 113234191 113236127 0.000000e+00 2606
6 TraesCS4A01G184700 chr4D 84.426 244 24 5 3730 3959 113237803 113238046 1.110000e-55 228
7 TraesCS4A01G184700 chr5D 76.103 1247 135 85 1843 2981 226941165 226939974 5.910000e-138 501
8 TraesCS4A01G184700 chr5B 75.381 1247 142 80 1843 2983 244976932 244978119 2.170000e-122 449
9 TraesCS4A01G184700 chr5B 87.963 108 3 4 3477 3574 330950463 330950570 6.950000e-23 119
10 TraesCS4A01G184700 chr5A 75.301 1247 138 87 1845 2983 300964879 300963695 1.310000e-119 440
11 TraesCS4A01G184700 chr5A 89.140 221 22 1 3510 3730 38734326 38734108 1.400000e-69 274
12 TraesCS4A01G184700 chr6A 94.561 239 13 0 3497 3735 268201591 268201829 1.740000e-98 370
13 TraesCS4A01G184700 chr2D 94.142 239 14 0 3497 3735 537387057 537386819 8.090000e-97 364
14 TraesCS4A01G184700 chr2D 94.068 236 14 0 3497 3732 247100694 247100459 3.760000e-95 359
15 TraesCS4A01G184700 chr1A 94.515 237 12 1 3497 3733 353376585 353376820 8.090000e-97 364
16 TraesCS4A01G184700 chr3A 94.468 235 13 0 3497 3731 552989318 552989084 2.910000e-96 363
17 TraesCS4A01G184700 chr3A 91.176 272 14 1 3471 3732 331994236 331993965 1.050000e-95 361
18 TraesCS4A01G184700 chr3A 93.724 239 15 0 3497 3735 348838689 348838927 3.760000e-95 359
19 TraesCS4A01G184700 chr3D 94.068 236 14 0 3497 3732 533837548 533837783 3.760000e-95 359
20 TraesCS4A01G184700 chr6D 93.033 244 16 1 3497 3739 130962303 130962546 4.870000e-94 355
21 TraesCS4A01G184700 chr3B 85.609 271 23 6 3478 3732 222801223 222800953 1.810000e-68 270
22 TraesCS4A01G184700 chr3B 81.313 198 11 12 3476 3663 586266716 586266535 1.920000e-28 137
23 TraesCS4A01G184700 chr1D 87.029 239 31 0 3497 3735 423259728 423259966 1.810000e-68 270
24 TraesCS4A01G184700 chr2B 86.385 213 17 6 3476 3677 230157910 230158121 5.150000e-54 222
25 TraesCS4A01G184700 chr7B 82.117 274 30 7 3478 3732 21459159 21458886 2.400000e-52 217
26 TraesCS4A01G184700 chr7B 84.456 193 14 5 3478 3660 335257249 335257435 4.070000e-40 176
27 TraesCS4A01G184700 chr6B 84.574 188 19 4 3478 3655 386635797 386635984 1.130000e-40 178


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G184700 chr4A 463922382 463926340 3958 True 7312.000000 7312 100.000000 1 3959 1 chr4A.!!$R1 3958
1 TraesCS4A01G184700 chr4B 173966136 173969936 3800 False 1740.333333 4887 87.102667 1 3959 3 chr4B.!!$F1 3958
2 TraesCS4A01G184700 chr4D 113234191 113238046 3855 False 1914.333333 2909 90.395000 16 3959 3 chr4D.!!$F1 3943
3 TraesCS4A01G184700 chr5D 226939974 226941165 1191 True 501.000000 501 76.103000 1843 2981 1 chr5D.!!$R1 1138
4 TraesCS4A01G184700 chr5B 244976932 244978119 1187 False 449.000000 449 75.381000 1843 2983 1 chr5B.!!$F1 1140
5 TraesCS4A01G184700 chr5A 300963695 300964879 1184 True 440.000000 440 75.301000 1845 2983 1 chr5A.!!$R2 1138

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
911 964 0.905357 TTCCTGGTAGCTGCCTTCTC 59.095 55.0 22.25 0.0 0.0 2.87 F
1151 1225 0.247460 TTGCTCCTGTGTCTGATCCG 59.753 55.0 0.00 0.0 0.0 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2450 2678 3.047718 CTGAACATGGCCTGCTGCG 62.048 63.158 3.32 0.0 42.61 5.18 R
3029 3333 1.619827 CTTGTTGTTGCCCCATGTCAT 59.380 47.619 0.00 0.0 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 38 1.093972 TAACCGCCACATGCATTCTG 58.906 50.000 0.00 0.00 41.33 3.02
51 54 4.302455 CATTCTGTCACTTTCACTCTCGT 58.698 43.478 0.00 0.00 0.00 4.18
79 82 7.088272 CCGACAATAGAAATGTATCGGTCATA 58.912 38.462 0.00 0.00 34.96 2.15
173 176 3.654952 TTTACGGTCAAAACACACGTC 57.345 42.857 0.00 0.00 38.79 4.34
194 197 2.434359 GTCCCGTGCTACACTGCC 60.434 66.667 0.00 0.00 31.34 4.85
235 238 8.543862 ACCGTATGAACTTTTTAACCTCTTAG 57.456 34.615 0.00 0.00 0.00 2.18
262 269 2.304751 AGGACCTAACGGCGTATTTG 57.695 50.000 15.20 5.01 0.00 2.32
352 362 7.141363 CAGGAGAACAAGACAAATAAAAGGTG 58.859 38.462 0.00 0.00 0.00 4.00
426 443 2.339418 CGACATTGGTAACCGCAGTTA 58.661 47.619 0.00 0.00 37.42 2.24
596 618 1.188863 CATCCCCAAAGCCCAAAGAG 58.811 55.000 0.00 0.00 0.00 2.85
599 621 1.354368 TCCCCAAAGCCCAAAGAGTAG 59.646 52.381 0.00 0.00 0.00 2.57
601 623 1.272147 CCCAAAGCCCAAAGAGTAGCT 60.272 52.381 0.00 0.00 37.10 3.32
602 624 2.026262 CCCAAAGCCCAAAGAGTAGCTA 60.026 50.000 0.00 0.00 34.49 3.32
676 698 7.161404 GCACAAGATAGAGATAGAGAGAGAGA 58.839 42.308 0.00 0.00 0.00 3.10
678 700 8.588472 CACAAGATAGAGATAGAGAGAGAGAGA 58.412 40.741 0.00 0.00 0.00 3.10
679 701 8.811017 ACAAGATAGAGATAGAGAGAGAGAGAG 58.189 40.741 0.00 0.00 0.00 3.20
688 729 3.591835 GAGAGAGAGCCTCCGCCG 61.592 72.222 0.00 0.00 42.97 6.46
877 930 1.247419 ACTCACACTGCGGGAGAGAG 61.247 60.000 15.34 13.28 33.00 3.20
878 931 0.962855 CTCACACTGCGGGAGAGAGA 60.963 60.000 2.65 0.00 0.00 3.10
911 964 0.905357 TTCCTGGTAGCTGCCTTCTC 59.095 55.000 22.25 0.00 0.00 2.87
964 1017 3.479269 GCGTCCGTTTCCTCTGCG 61.479 66.667 0.00 0.00 0.00 5.18
986 1060 2.202623 ATCTGCGTTCGTCTCGGC 60.203 61.111 0.00 0.00 0.00 5.54
1063 1137 1.074752 GCTTTGCTTCCTCTCGACTG 58.925 55.000 0.00 0.00 0.00 3.51
1151 1225 0.247460 TTGCTCCTGTGTCTGATCCG 59.753 55.000 0.00 0.00 0.00 4.18
1159 1233 0.742281 GTGTCTGATCCGTGCATGCT 60.742 55.000 20.33 0.00 0.00 3.79
1162 1236 0.460811 TCTGATCCGTGCATGCTGTC 60.461 55.000 20.33 9.86 0.00 3.51
1188 1262 0.733729 TGTTTGTTTGTTCGTCCCCG 59.266 50.000 0.00 0.00 0.00 5.73
1284 1358 8.534333 TCAGCAAGATCGATGGTAAATAATAC 57.466 34.615 0.54 0.00 0.00 1.89
1322 1400 6.308282 TGTTTATCCGTGTTGTTTTGTTGTTC 59.692 34.615 0.00 0.00 0.00 3.18
1323 1401 2.852748 TCCGTGTTGTTTTGTTGTTCG 58.147 42.857 0.00 0.00 0.00 3.95
1324 1402 2.483106 TCCGTGTTGTTTTGTTGTTCGA 59.517 40.909 0.00 0.00 0.00 3.71
1443 1521 1.134098 GTGGATCCGGACACCATCATT 60.134 52.381 27.52 1.80 36.09 2.57
1525 1603 2.297033 GCCAATCAGTTCCAAAAGCTCA 59.703 45.455 0.00 0.00 0.00 4.26
1740 1899 3.056313 GCAGATGAAAGGTGCGCCC 62.056 63.158 14.07 5.76 34.57 6.13
1842 2001 0.465824 AGCAGATGCAGATGAAGGGC 60.466 55.000 7.68 0.00 45.16 5.19
2232 2400 2.825836 CCGGTGCAGATCAAGGGC 60.826 66.667 0.00 0.00 0.00 5.19
2292 2484 2.987547 CAGCAGCACCAAGGTGGG 60.988 66.667 20.02 0.00 45.73 4.61
2598 2859 4.043100 GGGGTTTACCAGGGCGCT 62.043 66.667 7.64 0.00 42.91 5.92
2757 3021 2.725641 CAGCAGCAGCAGCAACAA 59.274 55.556 12.92 0.00 45.49 2.83
2989 3293 3.499737 CCACCGCCGCTCATGTTC 61.500 66.667 0.00 0.00 0.00 3.18
2990 3294 2.741985 CACCGCCGCTCATGTTCA 60.742 61.111 0.00 0.00 0.00 3.18
3029 3333 1.272037 TGATGAATCTGGCAGTGGCAA 60.272 47.619 20.97 11.83 43.71 4.52
3285 3589 2.575532 ACTCTGGTGTCAATGTTGTGG 58.424 47.619 0.00 0.00 0.00 4.17
3320 3630 3.325870 TCTGCGTTGGTATGACTGAAAG 58.674 45.455 0.00 0.00 42.29 2.62
3337 3647 3.648067 TGAAAGGTGAGATGTCCAGAAGT 59.352 43.478 0.00 0.00 0.00 3.01
3343 3653 4.167268 GTGAGATGTCCAGAAGTAACGAC 58.833 47.826 0.00 0.00 0.00 4.34
3350 3660 4.214971 TGTCCAGAAGTAACGACAGTAGAC 59.785 45.833 0.00 0.00 31.80 2.59
3362 3672 4.158025 ACGACAGTAGACATGTAGAAAGGG 59.842 45.833 0.00 0.00 0.00 3.95
3381 3692 2.490903 GGGATATGTGCTTGATGCCATC 59.509 50.000 0.00 0.00 42.00 3.51
3401 3712 1.338105 CGAGGAATGCTTCACACTGGA 60.338 52.381 0.00 0.00 0.00 3.86
3402 3713 2.679059 CGAGGAATGCTTCACACTGGAT 60.679 50.000 0.00 0.00 0.00 3.41
3439 3750 3.316308 TCTTCTCAACCAAGCTTTTCTGC 59.684 43.478 0.00 0.00 0.00 4.26
3463 3774 4.046103 TCCTCCTTCCTAAGAAAGACTCCT 59.954 45.833 0.00 0.00 0.00 3.69
3477 3788 3.963129 AGACTCCTCACTGGACTTAGAG 58.037 50.000 0.00 0.00 40.56 2.43
3479 3790 1.754226 CTCCTCACTGGACTTAGAGGC 59.246 57.143 0.00 0.00 45.69 4.70
3481 3792 1.480137 CCTCACTGGACTTAGAGGCTG 59.520 57.143 0.00 0.00 40.98 4.85
3483 3794 2.564947 CTCACTGGACTTAGAGGCTGTT 59.435 50.000 0.00 0.00 0.00 3.16
3484 3795 2.972713 TCACTGGACTTAGAGGCTGTTT 59.027 45.455 0.00 0.00 0.00 2.83
3486 3797 2.039084 ACTGGACTTAGAGGCTGTTTGG 59.961 50.000 0.00 0.00 0.00 3.28
3487 3798 2.039084 CTGGACTTAGAGGCTGTTTGGT 59.961 50.000 0.00 0.00 0.00 3.67
3488 3799 2.441750 TGGACTTAGAGGCTGTTTGGTT 59.558 45.455 0.00 0.00 0.00 3.67
3489 3800 3.117663 TGGACTTAGAGGCTGTTTGGTTT 60.118 43.478 0.00 0.00 0.00 3.27
3490 3801 3.253432 GGACTTAGAGGCTGTTTGGTTTG 59.747 47.826 0.00 0.00 0.00 2.93
3492 3803 3.632145 ACTTAGAGGCTGTTTGGTTTGTG 59.368 43.478 0.00 0.00 0.00 3.33
3494 3805 2.024414 AGAGGCTGTTTGGTTTGTGAC 58.976 47.619 0.00 0.00 0.00 3.67
3495 3806 2.024414 GAGGCTGTTTGGTTTGTGACT 58.976 47.619 0.00 0.00 0.00 3.41
3496 3807 3.118038 AGAGGCTGTTTGGTTTGTGACTA 60.118 43.478 0.00 0.00 0.00 2.59
3497 3808 3.626930 AGGCTGTTTGGTTTGTGACTAA 58.373 40.909 0.00 0.00 0.00 2.24
3498 3809 3.632145 AGGCTGTTTGGTTTGTGACTAAG 59.368 43.478 0.00 0.00 29.89 2.18
3499 3810 3.630312 GGCTGTTTGGTTTGTGACTAAGA 59.370 43.478 0.00 0.00 29.89 2.10
3501 3812 5.221244 GGCTGTTTGGTTTGTGACTAAGATT 60.221 40.000 0.00 0.00 29.89 2.40
3502 3813 5.687285 GCTGTTTGGTTTGTGACTAAGATTG 59.313 40.000 0.00 0.00 29.89 2.67
3503 3814 5.587289 TGTTTGGTTTGTGACTAAGATTGC 58.413 37.500 0.00 0.00 29.89 3.56
3506 3817 3.568007 TGGTTTGTGACTAAGATTGCCAC 59.432 43.478 0.00 0.00 0.00 5.01
3507 3818 3.568007 GGTTTGTGACTAAGATTGCCACA 59.432 43.478 0.00 0.00 36.15 4.17
3508 3819 4.537015 GTTTGTGACTAAGATTGCCACAC 58.463 43.478 0.00 0.00 37.46 3.82
3509 3820 2.778299 TGTGACTAAGATTGCCACACC 58.222 47.619 0.00 0.00 33.42 4.16
3511 3822 3.580895 TGTGACTAAGATTGCCACACCTA 59.419 43.478 0.00 0.00 33.42 3.08
3512 3823 4.041075 TGTGACTAAGATTGCCACACCTAA 59.959 41.667 0.00 0.00 33.42 2.69
3513 3824 4.631813 GTGACTAAGATTGCCACACCTAAG 59.368 45.833 0.00 0.00 0.00 2.18
3514 3825 4.192317 GACTAAGATTGCCACACCTAAGG 58.808 47.826 0.00 0.00 0.00 2.69
3515 3826 3.587506 ACTAAGATTGCCACACCTAAGGT 59.412 43.478 0.00 0.00 35.62 3.50
3516 3827 3.525800 AAGATTGCCACACCTAAGGTT 57.474 42.857 0.00 0.00 31.02 3.50
3517 3828 4.650972 AAGATTGCCACACCTAAGGTTA 57.349 40.909 0.00 0.00 31.02 2.85
3518 3829 4.222124 AGATTGCCACACCTAAGGTTAG 57.778 45.455 0.00 0.00 31.02 2.34
3530 3841 3.756963 CCTAAGGTTAGGCAAGTTTGACC 59.243 47.826 2.80 0.00 43.43 4.02
3531 3842 3.306472 AAGGTTAGGCAAGTTTGACCA 57.694 42.857 0.00 0.00 36.67 4.02
3532 3843 3.306472 AGGTTAGGCAAGTTTGACCAA 57.694 42.857 0.00 0.00 36.67 3.67
3533 3844 2.956333 AGGTTAGGCAAGTTTGACCAAC 59.044 45.455 1.06 1.06 36.67 3.77
3545 3856 5.930135 AGTTTGACCAACTTAGATGAGTGT 58.070 37.500 0.00 0.00 43.89 3.55
3546 3857 6.357367 AGTTTGACCAACTTAGATGAGTGTT 58.643 36.000 0.00 0.00 43.89 3.32
3547 3858 6.828785 AGTTTGACCAACTTAGATGAGTGTTT 59.171 34.615 0.00 0.00 43.89 2.83
3548 3859 6.618287 TTGACCAACTTAGATGAGTGTTTG 57.382 37.500 0.00 0.00 0.00 2.93
3549 3860 5.063204 TGACCAACTTAGATGAGTGTTTGG 58.937 41.667 0.00 0.00 0.00 3.28
3550 3861 5.048846 ACCAACTTAGATGAGTGTTTGGT 57.951 39.130 0.00 0.00 0.00 3.67
3551 3862 5.445964 ACCAACTTAGATGAGTGTTTGGTT 58.554 37.500 0.00 0.00 0.00 3.67
3552 3863 5.531287 ACCAACTTAGATGAGTGTTTGGTTC 59.469 40.000 0.00 0.00 0.00 3.62
3553 3864 5.530915 CCAACTTAGATGAGTGTTTGGTTCA 59.469 40.000 0.00 0.00 0.00 3.18
3554 3865 6.039270 CCAACTTAGATGAGTGTTTGGTTCAA 59.961 38.462 0.00 0.00 0.00 2.69
3555 3866 6.867662 ACTTAGATGAGTGTTTGGTTCAAG 57.132 37.500 0.00 0.00 0.00 3.02
3556 3867 5.239525 ACTTAGATGAGTGTTTGGTTCAAGC 59.760 40.000 0.00 0.00 0.00 4.01
3557 3868 2.887152 AGATGAGTGTTTGGTTCAAGCC 59.113 45.455 0.00 0.00 0.00 4.35
3558 3869 2.136298 TGAGTGTTTGGTTCAAGCCA 57.864 45.000 0.00 0.00 36.62 4.75
3559 3870 1.748493 TGAGTGTTTGGTTCAAGCCAC 59.252 47.619 0.00 0.00 38.42 5.01
3560 3871 1.748493 GAGTGTTTGGTTCAAGCCACA 59.252 47.619 11.95 0.00 38.42 4.17
3561 3872 1.476488 AGTGTTTGGTTCAAGCCACAC 59.524 47.619 10.00 10.00 39.10 3.82
3562 3873 0.820871 TGTTTGGTTCAAGCCACACC 59.179 50.000 0.54 0.00 38.17 4.16
3563 3874 1.111277 GTTTGGTTCAAGCCACACCT 58.889 50.000 0.00 0.00 38.42 4.00
3564 3875 1.480545 GTTTGGTTCAAGCCACACCTT 59.519 47.619 0.00 0.00 38.42 3.50
3565 3876 2.691011 GTTTGGTTCAAGCCACACCTTA 59.309 45.455 0.00 0.00 38.42 2.69
3566 3877 2.270352 TGGTTCAAGCCACACCTTAG 57.730 50.000 0.00 0.00 32.81 2.18
3567 3878 1.771854 TGGTTCAAGCCACACCTTAGA 59.228 47.619 0.00 0.00 32.81 2.10
3568 3879 2.152016 GGTTCAAGCCACACCTTAGAC 58.848 52.381 0.00 0.00 0.00 2.59
3569 3880 2.486548 GGTTCAAGCCACACCTTAGACA 60.487 50.000 0.00 0.00 0.00 3.41
3570 3881 3.211045 GTTCAAGCCACACCTTAGACAA 58.789 45.455 0.00 0.00 0.00 3.18
3571 3882 3.126001 TCAAGCCACACCTTAGACAAG 57.874 47.619 0.00 0.00 0.00 3.16
3572 3883 1.537202 CAAGCCACACCTTAGACAAGC 59.463 52.381 0.00 0.00 0.00 4.01
3573 3884 0.036875 AGCCACACCTTAGACAAGCC 59.963 55.000 0.00 0.00 0.00 4.35
3574 3885 0.250727 GCCACACCTTAGACAAGCCA 60.251 55.000 0.00 0.00 0.00 4.75
3575 3886 1.523758 CCACACCTTAGACAAGCCAC 58.476 55.000 0.00 0.00 0.00 5.01
3576 3887 1.202758 CCACACCTTAGACAAGCCACA 60.203 52.381 0.00 0.00 0.00 4.17
3577 3888 1.873591 CACACCTTAGACAAGCCACAC 59.126 52.381 0.00 0.00 0.00 3.82
3578 3889 1.768870 ACACCTTAGACAAGCCACACT 59.231 47.619 0.00 0.00 0.00 3.55
3579 3890 2.172717 ACACCTTAGACAAGCCACACTT 59.827 45.455 0.00 0.00 40.05 3.16
3589 3900 4.217210 CCACACTTGGGCCCCACA 62.217 66.667 22.27 1.50 39.57 4.17
3590 3901 2.118076 CACACTTGGGCCCCACAT 59.882 61.111 22.27 0.00 30.78 3.21
3591 3902 2.118076 ACACTTGGGCCCCACATG 59.882 61.111 22.27 14.99 30.78 3.21
3592 3903 2.440147 CACTTGGGCCCCACATGA 59.560 61.111 22.27 0.00 30.78 3.07
3593 3904 1.978617 CACTTGGGCCCCACATGAC 60.979 63.158 22.27 0.00 30.78 3.06
3594 3905 2.440147 CTTGGGCCCCACATGACA 59.560 61.111 22.27 0.00 30.78 3.58
3595 3906 1.000739 CTTGGGCCCCACATGACAT 59.999 57.895 22.27 0.00 30.78 3.06
3596 3907 0.258484 CTTGGGCCCCACATGACATA 59.742 55.000 22.27 0.00 30.78 2.29
3597 3908 0.033601 TTGGGCCCCACATGACATAC 60.034 55.000 22.27 0.00 30.78 2.39
3598 3909 1.210885 TGGGCCCCACATGACATACA 61.211 55.000 22.27 0.00 0.00 2.29
3599 3910 0.751643 GGGCCCCACATGACATACAC 60.752 60.000 12.23 0.00 0.00 2.90
3600 3911 0.255890 GGCCCCACATGACATACACT 59.744 55.000 0.00 0.00 0.00 3.55
3601 3912 1.668419 GCCCCACATGACATACACTC 58.332 55.000 0.00 0.00 0.00 3.51
3602 3913 1.065491 GCCCCACATGACATACACTCA 60.065 52.381 0.00 0.00 0.00 3.41
3603 3914 2.617788 GCCCCACATGACATACACTCAA 60.618 50.000 0.00 0.00 0.00 3.02
3604 3915 3.684908 CCCCACATGACATACACTCAAA 58.315 45.455 0.00 0.00 0.00 2.69
3605 3916 4.078537 CCCCACATGACATACACTCAAAA 58.921 43.478 0.00 0.00 0.00 2.44
3606 3917 4.082787 CCCCACATGACATACACTCAAAAC 60.083 45.833 0.00 0.00 0.00 2.43
3607 3918 4.378356 CCCACATGACATACACTCAAAACG 60.378 45.833 0.00 0.00 0.00 3.60
3608 3919 4.213270 CCACATGACATACACTCAAAACGT 59.787 41.667 0.00 0.00 0.00 3.99
3609 3920 5.139482 CACATGACATACACTCAAAACGTG 58.861 41.667 0.00 0.00 38.32 4.49
3610 3921 4.814234 ACATGACATACACTCAAAACGTGT 59.186 37.500 0.00 0.00 46.45 4.49
3611 3922 4.787381 TGACATACACTCAAAACGTGTG 57.213 40.909 6.10 1.74 44.63 3.82
3612 3923 4.434520 TGACATACACTCAAAACGTGTGA 58.565 39.130 9.67 6.06 44.63 3.58
3613 3924 4.269123 TGACATACACTCAAAACGTGTGAC 59.731 41.667 9.67 0.00 44.63 3.67
3614 3925 4.185394 ACATACACTCAAAACGTGTGACA 58.815 39.130 9.67 0.00 44.63 3.58
3615 3926 4.632251 ACATACACTCAAAACGTGTGACAA 59.368 37.500 9.67 0.00 44.63 3.18
3616 3927 3.740044 ACACTCAAAACGTGTGACAAG 57.260 42.857 9.67 0.00 43.44 3.16
3617 3928 3.331150 ACACTCAAAACGTGTGACAAGA 58.669 40.909 5.34 0.00 43.44 3.02
3618 3929 3.938963 ACACTCAAAACGTGTGACAAGAT 59.061 39.130 5.34 0.00 43.44 2.40
3619 3930 4.394920 ACACTCAAAACGTGTGACAAGATT 59.605 37.500 5.34 0.00 43.44 2.40
3620 3931 5.106317 ACACTCAAAACGTGTGACAAGATTT 60.106 36.000 5.34 3.13 43.44 2.17
3621 3932 5.227805 CACTCAAAACGTGTGACAAGATTTG 59.772 40.000 21.48 21.48 40.79 2.32
3622 3933 4.101942 TCAAAACGTGTGACAAGATTTGC 58.898 39.130 22.26 0.00 36.33 3.68
3623 3934 4.104776 CAAAACGTGTGACAAGATTTGCT 58.895 39.130 17.58 0.00 32.04 3.91
3624 3935 4.370364 AAACGTGTGACAAGATTTGCTT 57.630 36.364 5.34 0.00 37.29 3.91
3625 3936 5.493133 AAACGTGTGACAAGATTTGCTTA 57.507 34.783 5.34 0.00 34.31 3.09
3626 3937 4.732285 ACGTGTGACAAGATTTGCTTAG 57.268 40.909 5.34 0.00 34.31 2.18
3627 3938 3.498397 ACGTGTGACAAGATTTGCTTAGG 59.502 43.478 5.34 0.00 34.31 2.69
3628 3939 3.667960 CGTGTGACAAGATTTGCTTAGGC 60.668 47.826 0.00 0.00 34.31 3.93
3629 3940 3.503748 GTGTGACAAGATTTGCTTAGGCT 59.496 43.478 0.00 0.00 39.59 4.58
3630 3941 4.022849 GTGTGACAAGATTTGCTTAGGCTT 60.023 41.667 0.00 0.00 39.59 4.35
3631 3942 4.022935 TGTGACAAGATTTGCTTAGGCTTG 60.023 41.667 0.00 0.00 41.15 4.01
3632 3943 3.057315 TGACAAGATTTGCTTAGGCTTGC 60.057 43.478 0.00 0.00 39.51 4.01
3633 3944 2.232208 ACAAGATTTGCTTAGGCTTGCC 59.768 45.455 2.97 2.97 39.51 4.52
3634 3945 2.220653 AGATTTGCTTAGGCTTGCCA 57.779 45.000 14.54 0.00 39.59 4.92
3635 3946 2.528564 AGATTTGCTTAGGCTTGCCAA 58.471 42.857 14.54 5.54 39.59 4.52
3636 3947 2.232208 AGATTTGCTTAGGCTTGCCAAC 59.768 45.455 14.54 0.79 39.59 3.77
3637 3948 1.703411 TTTGCTTAGGCTTGCCAACT 58.297 45.000 14.54 0.00 39.59 3.16
3638 3949 1.703411 TTGCTTAGGCTTGCCAACTT 58.297 45.000 14.54 0.00 39.59 2.66
3639 3950 2.577606 TGCTTAGGCTTGCCAACTTA 57.422 45.000 14.54 0.00 39.59 2.24
3640 3951 3.085952 TGCTTAGGCTTGCCAACTTAT 57.914 42.857 14.54 0.00 39.59 1.73
3641 3952 2.754552 TGCTTAGGCTTGCCAACTTATG 59.245 45.455 14.54 1.58 39.59 1.90
3642 3953 2.099756 GCTTAGGCTTGCCAACTTATGG 59.900 50.000 14.54 0.00 43.07 2.74
3654 3965 5.902613 CCAACTTATGGCTCTCATTTTGA 57.097 39.130 0.00 0.00 43.80 2.69
3655 3966 6.461110 CCAACTTATGGCTCTCATTTTGAT 57.539 37.500 0.00 0.00 43.80 2.57
3656 3967 6.270815 CCAACTTATGGCTCTCATTTTGATG 58.729 40.000 0.00 0.00 43.80 3.07
3657 3968 6.095860 CCAACTTATGGCTCTCATTTTGATGA 59.904 38.462 0.00 0.00 43.80 2.92
3658 3969 7.363181 CCAACTTATGGCTCTCATTTTGATGAA 60.363 37.037 0.00 0.00 43.80 2.57
3659 3970 7.093322 ACTTATGGCTCTCATTTTGATGAAC 57.907 36.000 0.00 0.00 37.30 3.18
3660 3971 6.888632 ACTTATGGCTCTCATTTTGATGAACT 59.111 34.615 0.00 0.00 37.30 3.01
3661 3972 8.049117 ACTTATGGCTCTCATTTTGATGAACTA 58.951 33.333 0.00 0.00 37.30 2.24
3662 3973 8.806429 TTATGGCTCTCATTTTGATGAACTAA 57.194 30.769 0.00 0.00 37.30 2.24
3663 3974 6.500684 TGGCTCTCATTTTGATGAACTAAC 57.499 37.500 0.00 0.00 0.00 2.34
3664 3975 5.415701 TGGCTCTCATTTTGATGAACTAACC 59.584 40.000 0.00 0.00 0.00 2.85
3665 3976 5.649831 GGCTCTCATTTTGATGAACTAACCT 59.350 40.000 0.00 0.00 0.00 3.50
3666 3977 6.151817 GGCTCTCATTTTGATGAACTAACCTT 59.848 38.462 0.00 0.00 0.00 3.50
3667 3978 7.336931 GGCTCTCATTTTGATGAACTAACCTTA 59.663 37.037 0.00 0.00 0.00 2.69
3668 3979 8.394121 GCTCTCATTTTGATGAACTAACCTTAG 58.606 37.037 0.00 0.00 36.82 2.18
3669 3980 8.792830 TCTCATTTTGATGAACTAACCTTAGG 57.207 34.615 0.00 0.00 35.08 2.69
3670 3981 7.336931 TCTCATTTTGATGAACTAACCTTAGGC 59.663 37.037 0.00 0.00 35.08 3.93
3671 3982 6.945435 TCATTTTGATGAACTAACCTTAGGCA 59.055 34.615 0.00 0.00 35.08 4.75
3672 3983 7.450014 TCATTTTGATGAACTAACCTTAGGCAA 59.550 33.333 0.00 0.00 35.08 4.52
3673 3984 6.817765 TTTGATGAACTAACCTTAGGCAAG 57.182 37.500 0.00 0.00 35.08 4.01
3674 3985 4.261801 TGATGAACTAACCTTAGGCAAGC 58.738 43.478 0.00 0.00 35.08 4.01
3675 3986 4.019321 TGATGAACTAACCTTAGGCAAGCT 60.019 41.667 0.00 0.00 35.08 3.74
3676 3987 4.367039 TGAACTAACCTTAGGCAAGCTT 57.633 40.909 0.00 0.00 35.08 3.74
3677 3988 4.072131 TGAACTAACCTTAGGCAAGCTTG 58.928 43.478 22.44 22.44 35.08 4.01
3678 3989 3.073274 ACTAACCTTAGGCAAGCTTGG 57.927 47.619 27.10 12.37 35.08 3.61
3688 3999 2.673976 GCAAGCTTGGCAAAAATGTG 57.326 45.000 27.10 0.00 0.00 3.21
3689 4000 1.941975 GCAAGCTTGGCAAAAATGTGT 59.058 42.857 27.10 0.00 0.00 3.72
3690 4001 2.286536 GCAAGCTTGGCAAAAATGTGTG 60.287 45.455 27.10 0.00 0.00 3.82
3691 4002 3.196463 CAAGCTTGGCAAAAATGTGTGA 58.804 40.909 19.14 0.00 0.00 3.58
3692 4003 2.825205 AGCTTGGCAAAAATGTGTGAC 58.175 42.857 0.00 0.00 0.00 3.67
3693 4004 2.168106 AGCTTGGCAAAAATGTGTGACA 59.832 40.909 0.00 0.00 0.00 3.58
3694 4005 2.935201 GCTTGGCAAAAATGTGTGACAA 59.065 40.909 0.00 0.00 40.47 3.18
3695 4006 3.373439 GCTTGGCAAAAATGTGTGACAAA 59.627 39.130 0.00 0.00 42.11 2.83
3696 4007 4.142730 GCTTGGCAAAAATGTGTGACAAAA 60.143 37.500 0.00 0.00 42.11 2.44
3697 4008 5.448904 GCTTGGCAAAAATGTGTGACAAAAT 60.449 36.000 0.00 0.00 42.11 1.82
3698 4009 5.481200 TGGCAAAAATGTGTGACAAAATG 57.519 34.783 0.00 0.00 26.90 2.32
3699 4010 4.940046 TGGCAAAAATGTGTGACAAAATGT 59.060 33.333 0.00 0.00 26.90 2.71
3700 4011 5.163784 TGGCAAAAATGTGTGACAAAATGTG 60.164 36.000 0.00 0.00 26.90 3.21
3701 4012 5.264712 GCAAAAATGTGTGACAAAATGTGG 58.735 37.500 0.00 0.00 0.00 4.17
3702 4013 5.264712 CAAAAATGTGTGACAAAATGTGGC 58.735 37.500 0.00 0.00 34.82 5.01
3703 4014 3.815856 AATGTGTGACAAAATGTGGCA 57.184 38.095 0.00 0.00 45.81 4.92
3710 4021 4.177165 TGACAAAATGTGGCAATGCTAG 57.823 40.909 4.82 0.00 44.65 3.42
3711 4022 3.573538 TGACAAAATGTGGCAATGCTAGT 59.426 39.130 4.82 0.00 44.65 2.57
3712 4023 4.168760 GACAAAATGTGGCAATGCTAGTC 58.831 43.478 4.82 0.00 34.13 2.59
3713 4024 3.056607 ACAAAATGTGGCAATGCTAGTCC 60.057 43.478 4.82 0.00 0.00 3.85
3714 4025 2.814805 AATGTGGCAATGCTAGTCCT 57.185 45.000 4.82 0.00 0.00 3.85
3715 4026 3.931907 AATGTGGCAATGCTAGTCCTA 57.068 42.857 4.82 0.00 0.00 2.94
3716 4027 2.988010 TGTGGCAATGCTAGTCCTAG 57.012 50.000 4.82 0.00 36.29 3.02
3717 4028 2.466846 TGTGGCAATGCTAGTCCTAGA 58.533 47.619 4.82 0.00 35.21 2.43
3718 4029 2.837591 TGTGGCAATGCTAGTCCTAGAA 59.162 45.455 4.82 0.00 35.21 2.10
3719 4030 3.198872 GTGGCAATGCTAGTCCTAGAAC 58.801 50.000 4.82 0.00 35.21 3.01
3720 4031 2.170607 TGGCAATGCTAGTCCTAGAACC 59.829 50.000 4.82 0.00 35.21 3.62
3721 4032 2.170607 GGCAATGCTAGTCCTAGAACCA 59.829 50.000 4.82 0.00 35.21 3.67
3722 4033 3.370527 GGCAATGCTAGTCCTAGAACCAA 60.371 47.826 4.82 0.00 35.21 3.67
3723 4034 4.261801 GCAATGCTAGTCCTAGAACCAAA 58.738 43.478 5.52 0.00 35.21 3.28
3724 4035 4.095036 GCAATGCTAGTCCTAGAACCAAAC 59.905 45.833 5.52 0.00 35.21 2.93
3725 4036 5.245531 CAATGCTAGTCCTAGAACCAAACA 58.754 41.667 5.52 0.00 35.21 2.83
3726 4037 4.537135 TGCTAGTCCTAGAACCAAACAG 57.463 45.455 5.52 0.00 35.21 3.16
3727 4038 3.263261 GCTAGTCCTAGAACCAAACAGC 58.737 50.000 5.52 0.00 35.21 4.40
3728 4039 2.861147 AGTCCTAGAACCAAACAGCC 57.139 50.000 0.00 0.00 0.00 4.85
3737 4048 1.076549 CCAAACAGCCCCTTAGCCA 59.923 57.895 0.00 0.00 0.00 4.75
3749 4060 0.746563 CTTAGCCAATTTCCGCCCGA 60.747 55.000 0.00 0.00 0.00 5.14
3755 4066 0.310854 CAATTTCCGCCCGATAAGCC 59.689 55.000 0.00 0.00 0.00 4.35
3756 4067 0.106918 AATTTCCGCCCGATAAGCCA 60.107 50.000 0.00 0.00 0.00 4.75
3757 4068 0.818040 ATTTCCGCCCGATAAGCCAC 60.818 55.000 0.00 0.00 0.00 5.01
3758 4069 2.186602 TTTCCGCCCGATAAGCCACA 62.187 55.000 0.00 0.00 0.00 4.17
3759 4070 2.124901 CCGCCCGATAAGCCACAA 60.125 61.111 0.00 0.00 0.00 3.33
3810 4121 1.941325 CTCGCCTTAGCCGATTTCTT 58.059 50.000 0.00 0.00 34.57 2.52
3831 4142 0.729116 CCGATAAGCCTTGTGCACAG 59.271 55.000 20.59 10.78 44.83 3.66
3860 4171 0.371645 GCTTCTCGCAAAGGTGATCG 59.628 55.000 0.00 0.00 38.92 3.69
3867 4178 2.425668 TCGCAAAGGTGATCGTCTGATA 59.574 45.455 0.00 0.00 34.09 2.15
3869 4180 3.243877 CGCAAAGGTGATCGTCTGATAAG 59.756 47.826 0.00 0.00 34.09 1.73
3870 4181 3.001736 GCAAAGGTGATCGTCTGATAAGC 59.998 47.826 0.00 0.00 34.09 3.09
3871 4182 3.460857 AAGGTGATCGTCTGATAAGCC 57.539 47.619 0.00 0.00 34.48 4.35
3872 4183 2.672098 AGGTGATCGTCTGATAAGCCT 58.328 47.619 0.00 0.00 34.48 4.58
3873 4184 3.034635 AGGTGATCGTCTGATAAGCCTT 58.965 45.455 0.00 0.00 34.48 4.35
3875 4186 3.430929 GGTGATCGTCTGATAAGCCTTGT 60.431 47.826 0.00 0.00 34.09 3.16
3876 4187 3.553511 GTGATCGTCTGATAAGCCTTGTG 59.446 47.826 0.00 0.00 34.09 3.33
3889 4214 1.679139 CCTTGTGCACAACTTCCTCA 58.321 50.000 27.96 5.77 0.00 3.86
3891 4216 2.426738 CCTTGTGCACAACTTCCTCAAA 59.573 45.455 27.96 4.20 0.00 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 25 3.253921 TGAAAGTGACAGAATGCATGTGG 59.746 43.478 0.00 0.00 42.53 4.17
51 54 5.163488 ACCGATACATTTCTATTGTCGGTGA 60.163 40.000 14.78 0.00 42.56 4.02
79 82 4.239304 TCGTGCTAAAATACATGTGACGT 58.761 39.130 9.11 0.00 0.00 4.34
235 238 1.017701 CCGTTAGGTCCTTCGTTGGC 61.018 60.000 0.00 0.00 0.00 4.52
266 273 1.080298 GAGTACCCACCGTCCAACG 60.080 63.158 0.00 0.00 42.11 4.10
352 362 0.101219 CCGCTGCCAATTCTTTAGCC 59.899 55.000 0.00 0.00 0.00 3.93
426 443 1.706866 GGTACCCCGGGGCTTTATAAT 59.293 52.381 40.67 20.20 39.32 1.28
447 464 1.002888 CAGAGGCTGAACATGTGAGGT 59.997 52.381 0.00 0.00 32.44 3.85
448 465 1.002888 ACAGAGGCTGAACATGTGAGG 59.997 52.381 0.00 0.00 35.18 3.86
449 466 2.028294 AGACAGAGGCTGAACATGTGAG 60.028 50.000 0.00 0.00 35.18 3.51
545 562 0.109551 GCCTTTCGCTTTTGCTCTCC 60.110 55.000 0.00 0.00 44.80 3.71
570 587 0.189327 GGCTTTGGGGATGGATGGAT 59.811 55.000 0.00 0.00 0.00 3.41
571 588 1.620259 GGCTTTGGGGATGGATGGA 59.380 57.895 0.00 0.00 0.00 3.41
572 589 1.458209 GGGCTTTGGGGATGGATGG 60.458 63.158 0.00 0.00 0.00 3.51
573 590 0.325484 TTGGGCTTTGGGGATGGATG 60.325 55.000 0.00 0.00 0.00 3.51
599 621 7.558081 ACCCTTTTCAAGATTTATTCCTCTAGC 59.442 37.037 0.00 0.00 0.00 3.42
602 624 9.822727 TTTACCCTTTTCAAGATTTATTCCTCT 57.177 29.630 0.00 0.00 0.00 3.69
688 729 7.080653 ACTAGAAGGAAATTAATAGGGGAGC 57.919 40.000 0.00 0.00 0.00 4.70
824 877 0.174617 GCGAGAGAAGGAGGAACTGG 59.825 60.000 0.00 0.00 41.55 4.00
877 930 1.098050 AGGAAACATTGCGCTCCATC 58.902 50.000 9.73 0.00 0.00 3.51
878 931 0.813184 CAGGAAACATTGCGCTCCAT 59.187 50.000 9.73 0.00 0.00 3.41
911 964 4.101077 AGGGGGAGGAGAGCAGGG 62.101 72.222 0.00 0.00 0.00 4.45
964 1017 1.142778 GAGACGAACGCAGATCTGGC 61.143 60.000 23.89 14.68 0.00 4.85
976 1029 3.755628 CTTCCCGGCCGAGACGAA 61.756 66.667 30.73 19.96 35.20 3.85
986 1060 1.153289 CTCATGGCTGACTTCCCGG 60.153 63.158 0.00 0.00 0.00 5.73
1063 1137 0.394352 ACATGCGGGGGAATGTCTTC 60.394 55.000 0.00 0.00 31.33 2.87
1151 1225 2.253758 ACACACGGACAGCATGCAC 61.254 57.895 21.98 10.59 42.53 4.57
1159 1233 1.880675 ACAAACAAACACACACGGACA 59.119 42.857 0.00 0.00 0.00 4.02
1162 1236 1.908247 CGAACAAACAAACACACACGG 59.092 47.619 0.00 0.00 0.00 4.94
1284 1358 5.233050 CACGGATAAACAGAAGTGCATCTAG 59.767 44.000 0.00 0.00 0.00 2.43
1291 1367 5.418310 AACAACACGGATAAACAGAAGTG 57.582 39.130 0.00 0.00 35.89 3.16
1322 1400 0.177141 ACACATTATCCCCACGGTCG 59.823 55.000 0.00 0.00 0.00 4.79
1323 1401 2.014128 CAACACATTATCCCCACGGTC 58.986 52.381 0.00 0.00 0.00 4.79
1324 1402 1.340600 CCAACACATTATCCCCACGGT 60.341 52.381 0.00 0.00 0.00 4.83
1362 1440 2.656646 CTCTGGTACACGCCTGCA 59.343 61.111 0.00 0.00 0.00 4.41
1443 1521 1.610624 CCGCCCTTGTTGAGCTTCTTA 60.611 52.381 0.00 0.00 0.00 2.10
1509 1587 3.214328 GAGGTTGAGCTTTTGGAACTGA 58.786 45.455 0.00 0.00 0.00 3.41
2232 2400 4.973360 CCGCCGTTGTTGCCGTTG 62.973 66.667 0.00 0.00 0.00 4.10
2292 2484 4.676586 CCGTTGCCGTTGCCGTTC 62.677 66.667 0.00 0.00 36.33 3.95
2450 2678 3.047718 CTGAACATGGCCTGCTGCG 62.048 63.158 3.32 0.00 42.61 5.18
2754 3018 6.583427 CGTTCATCATCATCATTTGTTGTTGT 59.417 34.615 1.65 0.00 31.23 3.32
2755 3019 6.034150 CCGTTCATCATCATCATTTGTTGTTG 59.966 38.462 0.00 0.00 0.00 3.33
2756 3020 6.094719 CCGTTCATCATCATCATTTGTTGTT 58.905 36.000 0.00 0.00 0.00 2.83
2757 3021 5.643664 CCGTTCATCATCATCATTTGTTGT 58.356 37.500 0.00 0.00 0.00 3.32
2862 3159 3.525221 GCATAGGCGGTTGGCATT 58.475 55.556 0.00 0.00 46.16 3.56
2985 3289 3.486383 GTCTTCCTTCCAACCATGAACA 58.514 45.455 0.00 0.00 0.00 3.18
2986 3290 2.820197 GGTCTTCCTTCCAACCATGAAC 59.180 50.000 0.00 0.00 0.00 3.18
2987 3291 2.445145 TGGTCTTCCTTCCAACCATGAA 59.555 45.455 0.00 0.00 36.88 2.57
2988 3292 2.061848 TGGTCTTCCTTCCAACCATGA 58.938 47.619 0.00 0.00 36.88 3.07
2989 3293 2.584835 TGGTCTTCCTTCCAACCATG 57.415 50.000 0.00 0.00 36.88 3.66
3029 3333 1.619827 CTTGTTGTTGCCCCATGTCAT 59.380 47.619 0.00 0.00 0.00 3.06
3285 3589 3.268013 ACGCAGAATGTAAACACAAGC 57.732 42.857 0.00 0.00 39.31 4.01
3320 3630 3.192844 TCGTTACTTCTGGACATCTCACC 59.807 47.826 0.00 0.00 0.00 4.02
3337 3647 6.127814 CCCTTTCTACATGTCTACTGTCGTTA 60.128 42.308 0.00 0.00 0.00 3.18
3343 3653 7.869937 CACATATCCCTTTCTACATGTCTACTG 59.130 40.741 0.00 0.00 0.00 2.74
3350 3660 6.057533 TCAAGCACATATCCCTTTCTACATG 58.942 40.000 0.00 0.00 0.00 3.21
3381 3692 1.081892 CCAGTGTGAAGCATTCCTCG 58.918 55.000 0.00 0.00 46.93 4.63
3401 3712 2.770802 AGAAGATGTAGCTGACTGCCAT 59.229 45.455 0.00 0.00 44.23 4.40
3402 3713 2.167281 GAGAAGATGTAGCTGACTGCCA 59.833 50.000 0.00 0.00 44.23 4.92
3439 3750 4.404394 GGAGTCTTTCTTAGGAAGGAGGAG 59.596 50.000 0.00 0.00 38.05 3.69
3463 3774 2.310779 ACAGCCTCTAAGTCCAGTGA 57.689 50.000 0.00 0.00 0.00 3.41
3477 3788 3.630312 TCTTAGTCACAAACCAAACAGCC 59.370 43.478 0.00 0.00 0.00 4.85
3478 3789 4.893424 TCTTAGTCACAAACCAAACAGC 57.107 40.909 0.00 0.00 0.00 4.40
3479 3790 5.687285 GCAATCTTAGTCACAAACCAAACAG 59.313 40.000 0.00 0.00 0.00 3.16
3481 3792 4.982295 GGCAATCTTAGTCACAAACCAAAC 59.018 41.667 0.00 0.00 0.00 2.93
3483 3794 4.037446 GTGGCAATCTTAGTCACAAACCAA 59.963 41.667 0.00 0.00 0.00 3.67
3484 3795 3.568007 GTGGCAATCTTAGTCACAAACCA 59.432 43.478 0.00 0.00 0.00 3.67
3486 3797 4.537015 GTGTGGCAATCTTAGTCACAAAC 58.463 43.478 1.88 0.00 39.58 2.93
3487 3798 3.568007 GGTGTGGCAATCTTAGTCACAAA 59.432 43.478 1.88 0.00 39.58 2.83
3488 3799 3.146066 GGTGTGGCAATCTTAGTCACAA 58.854 45.455 1.88 0.00 39.58 3.33
3489 3800 2.371841 AGGTGTGGCAATCTTAGTCACA 59.628 45.455 0.00 0.00 36.20 3.58
3490 3801 3.059352 AGGTGTGGCAATCTTAGTCAC 57.941 47.619 0.00 0.00 0.00 3.67
3492 3803 4.192317 CCTTAGGTGTGGCAATCTTAGTC 58.808 47.826 0.00 0.00 0.00 2.59
3494 3805 4.222124 ACCTTAGGTGTGGCAATCTTAG 57.778 45.455 1.74 0.00 32.98 2.18
3495 3806 4.650972 AACCTTAGGTGTGGCAATCTTA 57.349 40.909 3.99 0.00 35.34 2.10
3496 3807 3.525800 AACCTTAGGTGTGGCAATCTT 57.474 42.857 3.99 0.00 35.34 2.40
3497 3808 3.054361 CCTAACCTTAGGTGTGGCAATCT 60.054 47.826 3.99 0.00 44.26 2.40
3498 3809 3.279434 CCTAACCTTAGGTGTGGCAATC 58.721 50.000 3.99 0.00 44.26 2.67
3499 3810 3.366052 CCTAACCTTAGGTGTGGCAAT 57.634 47.619 3.99 0.00 44.26 3.56
3508 3819 8.176385 GTTGGTCAAACTTGCCTAACCTTAGG 62.176 46.154 6.73 6.73 42.91 2.69
3509 3820 4.394729 TGGTCAAACTTGCCTAACCTTAG 58.605 43.478 0.00 0.00 0.00 2.18
3511 3822 3.306472 TGGTCAAACTTGCCTAACCTT 57.694 42.857 0.00 0.00 0.00 3.50
3512 3823 2.956333 GTTGGTCAAACTTGCCTAACCT 59.044 45.455 0.00 0.00 35.75 3.50
3513 3824 3.364889 GTTGGTCAAACTTGCCTAACC 57.635 47.619 5.07 0.00 35.75 2.85
3523 3834 6.619801 AACACTCATCTAAGTTGGTCAAAC 57.380 37.500 0.00 0.00 39.24 2.93
3526 3837 5.063204 CCAAACACTCATCTAAGTTGGTCA 58.937 41.667 0.00 0.00 0.00 4.02
3527 3838 5.063880 ACCAAACACTCATCTAAGTTGGTC 58.936 41.667 0.00 0.00 0.00 4.02
3529 3840 5.530915 TGAACCAAACACTCATCTAAGTTGG 59.469 40.000 0.00 0.00 0.00 3.77
3530 3841 6.618287 TGAACCAAACACTCATCTAAGTTG 57.382 37.500 0.00 0.00 0.00 3.16
3531 3842 6.238759 GCTTGAACCAAACACTCATCTAAGTT 60.239 38.462 0.00 0.00 0.00 2.66
3532 3843 5.239525 GCTTGAACCAAACACTCATCTAAGT 59.760 40.000 0.00 0.00 0.00 2.24
3533 3844 5.335191 GGCTTGAACCAAACACTCATCTAAG 60.335 44.000 0.00 0.00 0.00 2.18
3534 3845 4.518970 GGCTTGAACCAAACACTCATCTAA 59.481 41.667 0.00 0.00 0.00 2.10
3535 3846 4.072131 GGCTTGAACCAAACACTCATCTA 58.928 43.478 0.00 0.00 0.00 1.98
3536 3847 2.887152 GGCTTGAACCAAACACTCATCT 59.113 45.455 0.00 0.00 0.00 2.90
3537 3848 2.622942 TGGCTTGAACCAAACACTCATC 59.377 45.455 0.00 0.00 36.55 2.92
3539 3850 1.748493 GTGGCTTGAACCAAACACTCA 59.252 47.619 0.00 0.00 42.70 3.41
3540 3851 1.748493 TGTGGCTTGAACCAAACACTC 59.252 47.619 12.25 0.00 42.70 3.51
3541 3852 1.476488 GTGTGGCTTGAACCAAACACT 59.524 47.619 0.00 0.00 45.87 3.55
3542 3853 1.921243 GTGTGGCTTGAACCAAACAC 58.079 50.000 0.00 0.00 45.87 3.32
3544 3855 1.111277 AGGTGTGGCTTGAACCAAAC 58.889 50.000 0.00 0.00 45.86 2.93
3545 3856 1.859302 AAGGTGTGGCTTGAACCAAA 58.141 45.000 0.00 0.00 42.70 3.28
3546 3857 2.173782 TCTAAGGTGTGGCTTGAACCAA 59.826 45.455 0.00 0.00 42.70 3.67
3547 3858 1.771854 TCTAAGGTGTGGCTTGAACCA 59.228 47.619 0.00 0.00 36.37 3.67
3548 3859 2.152016 GTCTAAGGTGTGGCTTGAACC 58.848 52.381 0.00 0.00 0.00 3.62
3549 3860 2.846193 TGTCTAAGGTGTGGCTTGAAC 58.154 47.619 0.00 0.00 0.00 3.18
3550 3861 3.476552 CTTGTCTAAGGTGTGGCTTGAA 58.523 45.455 0.00 0.00 0.00 2.69
3551 3862 2.810400 GCTTGTCTAAGGTGTGGCTTGA 60.810 50.000 0.00 0.00 34.40 3.02
3552 3863 1.537202 GCTTGTCTAAGGTGTGGCTTG 59.463 52.381 0.00 0.00 34.40 4.01
3553 3864 1.545651 GGCTTGTCTAAGGTGTGGCTT 60.546 52.381 0.00 0.00 34.40 4.35
3554 3865 0.036875 GGCTTGTCTAAGGTGTGGCT 59.963 55.000 0.00 0.00 34.40 4.75
3555 3866 0.250727 TGGCTTGTCTAAGGTGTGGC 60.251 55.000 0.00 0.00 34.40 5.01
3556 3867 1.202758 TGTGGCTTGTCTAAGGTGTGG 60.203 52.381 0.00 0.00 34.40 4.17
3557 3868 1.873591 GTGTGGCTTGTCTAAGGTGTG 59.126 52.381 0.00 0.00 34.40 3.82
3558 3869 1.768870 AGTGTGGCTTGTCTAAGGTGT 59.231 47.619 0.00 0.00 34.40 4.16
3559 3870 2.550830 AGTGTGGCTTGTCTAAGGTG 57.449 50.000 0.00 0.00 34.40 4.00
3572 3883 3.528217 ATGTGGGGCCCAAGTGTGG 62.528 63.158 30.70 0.00 45.53 4.17
3573 3884 2.118076 ATGTGGGGCCCAAGTGTG 59.882 61.111 30.70 0.00 34.18 3.82
3574 3885 2.118076 CATGTGGGGCCCAAGTGT 59.882 61.111 30.70 10.84 34.18 3.55
3575 3886 1.978617 GTCATGTGGGGCCCAAGTG 60.979 63.158 30.70 27.29 34.18 3.16
3576 3887 1.803453 ATGTCATGTGGGGCCCAAGT 61.803 55.000 30.70 16.68 34.18 3.16
3577 3888 0.258484 TATGTCATGTGGGGCCCAAG 59.742 55.000 30.70 20.43 34.18 3.61
3578 3889 0.033601 GTATGTCATGTGGGGCCCAA 60.034 55.000 30.70 18.32 34.18 4.12
3579 3890 1.210885 TGTATGTCATGTGGGGCCCA 61.211 55.000 24.76 24.76 0.00 5.36
3580 3891 0.751643 GTGTATGTCATGTGGGGCCC 60.752 60.000 18.17 18.17 0.00 5.80
3581 3892 0.255890 AGTGTATGTCATGTGGGGCC 59.744 55.000 0.00 0.00 0.00 5.80
3582 3893 1.065491 TGAGTGTATGTCATGTGGGGC 60.065 52.381 0.00 0.00 0.00 5.80
3583 3894 3.348647 TTGAGTGTATGTCATGTGGGG 57.651 47.619 0.00 0.00 0.00 4.96
3584 3895 4.378356 CGTTTTGAGTGTATGTCATGTGGG 60.378 45.833 0.00 0.00 0.00 4.61
3585 3896 4.213270 ACGTTTTGAGTGTATGTCATGTGG 59.787 41.667 0.00 0.00 0.00 4.17
3586 3897 5.139482 CACGTTTTGAGTGTATGTCATGTG 58.861 41.667 0.00 0.00 35.08 3.21
3587 3898 5.342806 CACGTTTTGAGTGTATGTCATGT 57.657 39.130 0.00 0.00 35.08 3.21
3597 3908 4.536364 ATCTTGTCACACGTTTTGAGTG 57.464 40.909 0.00 0.00 44.57 3.51
3598 3909 5.331902 CAAATCTTGTCACACGTTTTGAGT 58.668 37.500 10.81 0.00 29.67 3.41
3599 3910 4.204978 GCAAATCTTGTCACACGTTTTGAG 59.795 41.667 17.64 0.00 29.67 3.02
3600 3911 4.101942 GCAAATCTTGTCACACGTTTTGA 58.898 39.130 17.64 0.67 29.67 2.69
3601 3912 4.104776 AGCAAATCTTGTCACACGTTTTG 58.895 39.130 11.63 11.63 30.67 2.44
3602 3913 4.370364 AGCAAATCTTGTCACACGTTTT 57.630 36.364 0.00 0.00 0.00 2.43
3603 3914 4.370364 AAGCAAATCTTGTCACACGTTT 57.630 36.364 0.00 0.00 32.79 3.60
3604 3915 4.024048 CCTAAGCAAATCTTGTCACACGTT 60.024 41.667 0.00 0.00 36.25 3.99
3605 3916 3.498397 CCTAAGCAAATCTTGTCACACGT 59.502 43.478 0.00 0.00 36.25 4.49
3606 3917 3.667960 GCCTAAGCAAATCTTGTCACACG 60.668 47.826 0.00 0.00 39.53 4.49
3607 3918 3.503748 AGCCTAAGCAAATCTTGTCACAC 59.496 43.478 0.00 0.00 43.56 3.82
3608 3919 3.754965 AGCCTAAGCAAATCTTGTCACA 58.245 40.909 0.00 0.00 43.56 3.58
3609 3920 4.479619 CAAGCCTAAGCAAATCTTGTCAC 58.520 43.478 0.00 0.00 43.56 3.67
3610 3921 3.057315 GCAAGCCTAAGCAAATCTTGTCA 60.057 43.478 0.00 0.00 43.56 3.58
3611 3922 3.505836 GCAAGCCTAAGCAAATCTTGTC 58.494 45.455 0.00 0.00 43.56 3.18
3612 3923 2.232208 GGCAAGCCTAAGCAAATCTTGT 59.768 45.455 3.29 0.00 43.56 3.16
3613 3924 2.231964 TGGCAAGCCTAAGCAAATCTTG 59.768 45.455 12.96 0.00 43.56 3.02
3614 3925 2.528564 TGGCAAGCCTAAGCAAATCTT 58.471 42.857 12.96 0.00 43.56 2.40
3615 3926 2.220653 TGGCAAGCCTAAGCAAATCT 57.779 45.000 12.96 0.00 43.56 2.40
3616 3927 2.232208 AGTTGGCAAGCCTAAGCAAATC 59.768 45.455 12.96 0.00 43.56 2.17
3617 3928 2.250924 AGTTGGCAAGCCTAAGCAAAT 58.749 42.857 12.96 0.00 43.56 2.32
3618 3929 1.703411 AGTTGGCAAGCCTAAGCAAA 58.297 45.000 12.96 0.00 43.56 3.68
3619 3930 1.703411 AAGTTGGCAAGCCTAAGCAA 58.297 45.000 12.96 0.00 43.56 3.91
3620 3931 2.577606 TAAGTTGGCAAGCCTAAGCA 57.422 45.000 12.96 0.00 43.56 3.91
3621 3932 2.099756 CCATAAGTTGGCAAGCCTAAGC 59.900 50.000 12.96 0.00 39.09 3.09
3632 3943 6.095860 TCATCAAAATGAGAGCCATAAGTTGG 59.904 38.462 0.00 0.00 41.65 3.77
3633 3944 7.092137 TCATCAAAATGAGAGCCATAAGTTG 57.908 36.000 0.00 0.00 36.98 3.16
3634 3945 7.395489 AGTTCATCAAAATGAGAGCCATAAGTT 59.605 33.333 0.00 0.00 42.72 2.66
3635 3946 6.888632 AGTTCATCAAAATGAGAGCCATAAGT 59.111 34.615 0.00 0.00 42.72 2.24
3636 3947 7.330900 AGTTCATCAAAATGAGAGCCATAAG 57.669 36.000 0.00 0.00 42.72 1.73
3637 3948 8.677300 GTTAGTTCATCAAAATGAGAGCCATAA 58.323 33.333 0.00 0.00 42.72 1.90
3638 3949 7.283127 GGTTAGTTCATCAAAATGAGAGCCATA 59.717 37.037 0.00 0.00 42.72 2.74
3639 3950 6.096001 GGTTAGTTCATCAAAATGAGAGCCAT 59.904 38.462 0.00 0.00 42.72 4.40
3640 3951 5.415701 GGTTAGTTCATCAAAATGAGAGCCA 59.584 40.000 0.00 0.00 42.72 4.75
3641 3952 5.649831 AGGTTAGTTCATCAAAATGAGAGCC 59.350 40.000 0.00 0.00 42.72 4.70
3642 3953 6.749923 AGGTTAGTTCATCAAAATGAGAGC 57.250 37.500 0.00 0.00 42.72 4.09
3643 3954 8.887717 CCTAAGGTTAGTTCATCAAAATGAGAG 58.112 37.037 0.00 0.00 42.72 3.20
3644 3955 7.336931 GCCTAAGGTTAGTTCATCAAAATGAGA 59.663 37.037 0.00 0.00 42.72 3.27
3645 3956 7.121168 TGCCTAAGGTTAGTTCATCAAAATGAG 59.879 37.037 0.00 0.00 42.72 2.90
3646 3957 6.945435 TGCCTAAGGTTAGTTCATCAAAATGA 59.055 34.615 0.00 0.00 40.18 2.57
3647 3958 7.156876 TGCCTAAGGTTAGTTCATCAAAATG 57.843 36.000 0.00 0.00 0.00 2.32
3648 3959 7.577616 GCTTGCCTAAGGTTAGTTCATCAAAAT 60.578 37.037 0.00 0.00 34.40 1.82
3649 3960 6.294508 GCTTGCCTAAGGTTAGTTCATCAAAA 60.295 38.462 0.00 0.00 34.40 2.44
3650 3961 5.183140 GCTTGCCTAAGGTTAGTTCATCAAA 59.817 40.000 0.00 0.00 34.40 2.69
3651 3962 4.700213 GCTTGCCTAAGGTTAGTTCATCAA 59.300 41.667 0.00 0.00 34.40 2.57
3652 3963 4.019321 AGCTTGCCTAAGGTTAGTTCATCA 60.019 41.667 0.00 0.00 41.61 3.07
3653 3964 4.518249 AGCTTGCCTAAGGTTAGTTCATC 58.482 43.478 0.00 0.00 41.61 2.92
3654 3965 4.576330 AGCTTGCCTAAGGTTAGTTCAT 57.424 40.909 0.00 0.00 41.61 2.57
3662 3973 0.178964 TTGCCAAGCTTGCCTAAGGT 60.179 50.000 21.43 0.00 45.98 3.50
3663 3974 0.968405 TTTGCCAAGCTTGCCTAAGG 59.032 50.000 21.43 7.42 34.40 2.69
3664 3975 2.818130 TTTTGCCAAGCTTGCCTAAG 57.182 45.000 21.43 8.08 36.97 2.18
3665 3976 3.181456 ACATTTTTGCCAAGCTTGCCTAA 60.181 39.130 21.43 10.63 0.00 2.69
3666 3977 2.368221 ACATTTTTGCCAAGCTTGCCTA 59.632 40.909 21.43 3.89 0.00 3.93
3667 3978 1.141455 ACATTTTTGCCAAGCTTGCCT 59.859 42.857 21.43 0.00 0.00 4.75
3668 3979 1.264826 CACATTTTTGCCAAGCTTGCC 59.735 47.619 21.43 11.17 0.00 4.52
3669 3980 1.941975 ACACATTTTTGCCAAGCTTGC 59.058 42.857 21.43 16.17 0.00 4.01
3670 3981 3.001533 GTCACACATTTTTGCCAAGCTTG 59.998 43.478 19.93 19.93 0.00 4.01
3671 3982 3.197265 GTCACACATTTTTGCCAAGCTT 58.803 40.909 0.00 0.00 0.00 3.74
3672 3983 2.168106 TGTCACACATTTTTGCCAAGCT 59.832 40.909 0.00 0.00 0.00 3.74
3673 3984 2.548875 TGTCACACATTTTTGCCAAGC 58.451 42.857 0.00 0.00 0.00 4.01
3674 3985 5.542616 TTTTGTCACACATTTTTGCCAAG 57.457 34.783 0.00 0.00 0.00 3.61
3675 3986 5.413833 ACATTTTGTCACACATTTTTGCCAA 59.586 32.000 0.00 0.00 0.00 4.52
3676 3987 4.940046 ACATTTTGTCACACATTTTTGCCA 59.060 33.333 0.00 0.00 0.00 4.92
3677 3988 5.264712 CACATTTTGTCACACATTTTTGCC 58.735 37.500 0.00 0.00 0.00 4.52
3678 3989 5.264712 CCACATTTTGTCACACATTTTTGC 58.735 37.500 0.00 0.00 0.00 3.68
3679 3990 5.163784 TGCCACATTTTGTCACACATTTTTG 60.164 36.000 0.00 0.00 0.00 2.44
3680 3991 4.940046 TGCCACATTTTGTCACACATTTTT 59.060 33.333 0.00 0.00 0.00 1.94
3681 3992 4.511527 TGCCACATTTTGTCACACATTTT 58.488 34.783 0.00 0.00 0.00 1.82
3682 3993 4.134379 TGCCACATTTTGTCACACATTT 57.866 36.364 0.00 0.00 0.00 2.32
3683 3994 3.815856 TGCCACATTTTGTCACACATT 57.184 38.095 0.00 0.00 0.00 2.71
3684 3995 3.815856 TTGCCACATTTTGTCACACAT 57.184 38.095 0.00 0.00 0.00 3.21
3685 3996 3.455327 CATTGCCACATTTTGTCACACA 58.545 40.909 0.00 0.00 0.00 3.72
3686 3997 2.221517 GCATTGCCACATTTTGTCACAC 59.778 45.455 0.00 0.00 0.00 3.82
3687 3998 2.102757 AGCATTGCCACATTTTGTCACA 59.897 40.909 4.70 0.00 0.00 3.58
3688 3999 2.758009 AGCATTGCCACATTTTGTCAC 58.242 42.857 4.70 0.00 0.00 3.67
3689 4000 3.573538 ACTAGCATTGCCACATTTTGTCA 59.426 39.130 4.70 0.00 0.00 3.58
3690 4001 4.168760 GACTAGCATTGCCACATTTTGTC 58.831 43.478 4.70 0.00 0.00 3.18
3691 4002 3.056607 GGACTAGCATTGCCACATTTTGT 60.057 43.478 4.70 0.00 0.00 2.83
3692 4003 3.194116 AGGACTAGCATTGCCACATTTTG 59.806 43.478 4.70 0.00 0.00 2.44
3693 4004 3.434309 AGGACTAGCATTGCCACATTTT 58.566 40.909 4.70 0.00 0.00 1.82
3694 4005 3.091633 AGGACTAGCATTGCCACATTT 57.908 42.857 4.70 0.00 0.00 2.32
3695 4006 2.814805 AGGACTAGCATTGCCACATT 57.185 45.000 4.70 0.00 0.00 2.71
3696 4007 3.041211 TCTAGGACTAGCATTGCCACAT 58.959 45.455 4.70 0.00 33.32 3.21
3697 4008 2.466846 TCTAGGACTAGCATTGCCACA 58.533 47.619 4.70 0.00 33.32 4.17
3698 4009 3.198872 GTTCTAGGACTAGCATTGCCAC 58.801 50.000 4.70 0.00 33.32 5.01
3699 4010 2.170607 GGTTCTAGGACTAGCATTGCCA 59.829 50.000 4.70 0.00 33.32 4.92
3700 4011 2.170607 TGGTTCTAGGACTAGCATTGCC 59.829 50.000 4.70 0.00 33.32 4.52
3701 4012 3.543680 TGGTTCTAGGACTAGCATTGC 57.456 47.619 0.01 0.00 33.32 3.56
3702 4013 5.245531 TGTTTGGTTCTAGGACTAGCATTG 58.754 41.667 0.01 0.00 33.32 2.82
3703 4014 5.491982 CTGTTTGGTTCTAGGACTAGCATT 58.508 41.667 0.01 0.00 33.32 3.56
3704 4015 4.624125 GCTGTTTGGTTCTAGGACTAGCAT 60.624 45.833 0.01 0.00 33.32 3.79
3705 4016 3.306780 GCTGTTTGGTTCTAGGACTAGCA 60.307 47.826 0.01 0.00 33.32 3.49
3706 4017 3.263261 GCTGTTTGGTTCTAGGACTAGC 58.737 50.000 0.01 0.85 33.32 3.42
3707 4018 3.369576 GGGCTGTTTGGTTCTAGGACTAG 60.370 52.174 0.01 0.00 34.56 2.57
3708 4019 2.570302 GGGCTGTTTGGTTCTAGGACTA 59.430 50.000 0.01 0.00 0.00 2.59
3709 4020 1.351350 GGGCTGTTTGGTTCTAGGACT 59.649 52.381 0.01 0.00 0.00 3.85
3710 4021 1.613520 GGGGCTGTTTGGTTCTAGGAC 60.614 57.143 0.00 0.00 0.00 3.85
3711 4022 0.696501 GGGGCTGTTTGGTTCTAGGA 59.303 55.000 0.00 0.00 0.00 2.94
3712 4023 0.698818 AGGGGCTGTTTGGTTCTAGG 59.301 55.000 0.00 0.00 0.00 3.02
3713 4024 2.586648 AAGGGGCTGTTTGGTTCTAG 57.413 50.000 0.00 0.00 0.00 2.43
3714 4025 2.290705 GCTAAGGGGCTGTTTGGTTCTA 60.291 50.000 0.00 0.00 0.00 2.10
3715 4026 1.547901 GCTAAGGGGCTGTTTGGTTCT 60.548 52.381 0.00 0.00 0.00 3.01
3716 4027 0.888619 GCTAAGGGGCTGTTTGGTTC 59.111 55.000 0.00 0.00 0.00 3.62
3717 4028 0.541998 GGCTAAGGGGCTGTTTGGTT 60.542 55.000 0.00 0.00 37.53 3.67
3718 4029 1.076727 GGCTAAGGGGCTGTTTGGT 59.923 57.895 0.00 0.00 37.53 3.67
3719 4030 0.541764 TTGGCTAAGGGGCTGTTTGG 60.542 55.000 0.00 0.00 41.48 3.28
3720 4031 1.560505 ATTGGCTAAGGGGCTGTTTG 58.439 50.000 0.00 0.00 41.48 2.93
3721 4032 2.325661 AATTGGCTAAGGGGCTGTTT 57.674 45.000 0.00 0.00 41.48 2.83
3722 4033 2.179427 GAAATTGGCTAAGGGGCTGTT 58.821 47.619 0.00 0.00 41.48 3.16
3723 4034 1.619704 GGAAATTGGCTAAGGGGCTGT 60.620 52.381 0.00 0.00 41.48 4.40
3724 4035 1.114627 GGAAATTGGCTAAGGGGCTG 58.885 55.000 0.00 0.00 41.48 4.85
3725 4036 0.395724 CGGAAATTGGCTAAGGGGCT 60.396 55.000 0.00 0.00 41.48 5.19
3726 4037 2.016393 GCGGAAATTGGCTAAGGGGC 62.016 60.000 0.00 0.00 41.27 5.80
3727 4038 1.391933 GGCGGAAATTGGCTAAGGGG 61.392 60.000 0.00 0.00 0.00 4.79
3728 4039 1.391933 GGGCGGAAATTGGCTAAGGG 61.392 60.000 0.00 0.00 0.00 3.95
3737 4048 0.106918 TGGCTTATCGGGCGGAAATT 60.107 50.000 0.00 0.00 34.31 1.82
3764 4075 1.667722 CAACAAGCTTGGGGAAGCC 59.332 57.895 29.18 0.00 46.61 4.35
3810 4121 0.392461 GTGCACAAGGCTTATCGGGA 60.392 55.000 13.17 0.00 45.15 5.14
3860 4171 2.426522 TGTGCACAAGGCTTATCAGAC 58.573 47.619 19.28 0.00 45.15 3.51
3867 4178 0.746659 GGAAGTTGTGCACAAGGCTT 59.253 50.000 31.81 28.78 45.15 4.35
3869 4180 0.312102 GAGGAAGTTGTGCACAAGGC 59.688 55.000 31.81 20.82 45.13 4.35
3870 4181 1.679139 TGAGGAAGTTGTGCACAAGG 58.321 50.000 31.81 0.00 36.39 3.61
3871 4182 3.129287 AGTTTGAGGAAGTTGTGCACAAG 59.871 43.478 31.81 0.00 36.39 3.16
3872 4183 3.088532 AGTTTGAGGAAGTTGTGCACAA 58.911 40.909 27.96 27.96 0.00 3.33
3873 4184 2.722094 AGTTTGAGGAAGTTGTGCACA 58.278 42.857 17.42 17.42 0.00 4.57
3875 4186 3.620488 AGAAGTTTGAGGAAGTTGTGCA 58.380 40.909 0.00 0.00 31.06 4.57
3876 4187 4.354587 CAAGAAGTTTGAGGAAGTTGTGC 58.645 43.478 0.00 0.00 31.06 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.