AutoCloner

Multiple sequence alignment - TraesCS4A01G175800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G175800	chr4A	100.000	2705	0	0	1	2705	446949046	446946342	0.000000e+00	4996.0
1	TraesCS4A01G175800	chr4A	80.344	524	75	21	1648	2146	623953169	623953689	3.290000e-99	372.0
2	TraesCS4A01G175800	chr4B	89.888	1335	112	17	829	2146	187436293	187437621	0.000000e+00	1696.0
3	TraesCS4A01G175800	chr4B	94.784	786	32	6	57	838	187435262	187436042	0.000000e+00	1216.0
4	TraesCS4A01G175800	chr4B	90.741	54	3	1	8	61	187435186	187435237	1.340000e-08	71.3
5	TraesCS4A01G175800	chr4D	94.764	783	35	3	57	838	122760592	122761369	0.000000e+00	1214.0
6	TraesCS4A01G175800	chr4D	82.121	481	73	10	1648	2117	49306837	49306359	1.510000e-107	399.0
7	TraesCS4A01G175800	chr4D	78.187	353	66	9	1275	1620	49307258	49306910	5.870000e-52	215.0
8	TraesCS4A01G175800	chr5D	95.536	560	24	1	2146	2705	198323237	198323795	0.000000e+00	894.0
9	TraesCS4A01G175800	chr5D	95.528	559	24	1	2147	2705	69117372	69116815	0.000000e+00	893.0
10	TraesCS4A01G175800	chr5D	95.357	560	24	2	2146	2705	317163364	317163921	0.000000e+00	889.0
11	TraesCS4A01G175800	chr1D	95.528	559	23	2	2147	2705	351926839	351926283	0.000000e+00	893.0
12	TraesCS4A01G175800	chr1D	95.204	563	26	1	2144	2705	95737331	95737893	0.000000e+00	889.0
13	TraesCS4A01G175800	chr7D	95.365	561	24	2	2145	2705	418589474	418588916	0.000000e+00	891.0
14	TraesCS4A01G175800	chr7D	95.204	563	25	2	2144	2705	157107830	157108391	0.000000e+00	889.0
15	TraesCS4A01G175800	chr3D	95.053	566	26	2	2142	2705	358575492	358576057	0.000000e+00	889.0
16	TraesCS4A01G175800	chr3D	95.035	564	28	0	2142	2705	540091879	540091316	0.000000e+00	887.0
17	TraesCS4A01G175800	chr1A	79.545	528	76	23	1648	2146	569950668	569951192	5.540000e-92	348.0
18	TraesCS4A01G175800	chr3A	77.684	354	68	11	1668	2014	718083287	718082938	3.530000e-49	206.0
19	TraesCS4A01G175800	chr2A	85.714	112	7	6	1646	1748	127158356	127158245	2.850000e-20	110.0
20	TraesCS4A01G175800	chr2A	75.000	248	56	6	1765	2009	293156581	293156825	2.850000e-20	110.0
21	TraesCS4A01G175800	chr6D	72.500	400	81	14	1693	2081	268359612	268359993	4.760000e-18	102.0
22	TraesCS4A01G175800	chr2D	72.329	365	85	11	1722	2081	257330827	257330474	1.710000e-17	100.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G175800	chr4A	446946342	446949046	2704	True	4996.000000	4996	100.000000	1	2705	1	chr4A.!!$R1	2704
1	TraesCS4A01G175800	chr4A	623953169	623953689	520	False	372.000000	372	80.344000	1648	2146	1	chr4A.!!$F1	498
2	TraesCS4A01G175800	chr4B	187435186	187437621	2435	False	994.433333	1696	91.804333	8	2146	3	chr4B.!!$F1	2138
3	TraesCS4A01G175800	chr4D	122760592	122761369	777	False	1214.000000	1214	94.764000	57	838	1	chr4D.!!$F1	781
4	TraesCS4A01G175800	chr4D	49306359	49307258	899	True	307.000000	399	80.154000	1275	2117	2	chr4D.!!$R1	842
5	TraesCS4A01G175800	chr5D	198323237	198323795	558	False	894.000000	894	95.536000	2146	2705	1	chr5D.!!$F1	559
6	TraesCS4A01G175800	chr5D	69116815	69117372	557	True	893.000000	893	95.528000	2147	2705	1	chr5D.!!$R1	558
7	TraesCS4A01G175800	chr5D	317163364	317163921	557	False	889.000000	889	95.357000	2146	2705	1	chr5D.!!$F2	559
8	TraesCS4A01G175800	chr1D	351926283	351926839	556	True	893.000000	893	95.528000	2147	2705	1	chr1D.!!$R1	558
9	TraesCS4A01G175800	chr1D	95737331	95737893	562	False	889.000000	889	95.204000	2144	2705	1	chr1D.!!$F1	561
10	TraesCS4A01G175800	chr7D	418588916	418589474	558	True	891.000000	891	95.365000	2145	2705	1	chr7D.!!$R1	560
11	TraesCS4A01G175800	chr7D	157107830	157108391	561	False	889.000000	889	95.204000	2144	2705	1	chr7D.!!$F1	561
12	TraesCS4A01G175800	chr3D	358575492	358576057	565	False	889.000000	889	95.053000	2142	2705	1	chr3D.!!$F1	563
13	TraesCS4A01G175800	chr3D	540091316	540091879	563	True	887.000000	887	95.035000	2142	2705	1	chr3D.!!$R1	563
14	TraesCS4A01G175800	chr1A	569950668	569951192	524	False	348.000000	348	79.545000	1648	2146	1	chr1A.!!$F1	498

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
448	479	0.462047	GCGACCCCAGTAAGTCCATG	60.462	60.0	0.00	0.00	0.00	3.66	F
1341	1640	0.393077	CATACGGGTGCCTTCCTAGG	59.607	60.0	0.82	0.82	45.02	3.02	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1664	2011	0.178990	ACCTTGGTTGCCTTGGTCTC	60.179	55.0	0.0	0.0	0.00	3.36	R
2578	2954	1.933021	AACACCATCGGAGACACCTA	58.067	50.0	0.0	0.0	42.51	3.08	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	56	5.128827	AGTTGAGAATCTAAAGTATGGCCGA	59.871	40.000	0.00	0.00	34.92	5.54
103	133	3.258372	TCCTGTGCTGTTACCTGACTTAG	59.742	47.826	0.00	0.00	0.00	2.18
136	167	2.548875	TGTTGTTTTGCATTGCAGTCC	58.451	42.857	11.76	4.23	40.61	3.85
188	219	2.808206	AATCCGAGCCCTAAGCCCG	61.808	63.158	0.00	0.00	45.47	6.13
448	479	0.462047	GCGACCCCAGTAAGTCCATG	60.462	60.000	0.00	0.00	0.00	3.66
484	515	0.538287	AGTTTCTGAACCTGGCTGCC	60.538	55.000	12.87	12.87	36.39	4.85
505	540	2.107953	GGCATCGGAGGAGCTGAC	59.892	66.667	0.00	0.00	33.94	3.51
510	545	1.459455	ATCGGAGGAGCTGACGATGG	61.459	60.000	9.69	0.00	43.55	3.51
522	557	0.889186	GACGATGGCACCCTTGTTGT	60.889	55.000	0.00	0.00	0.00	3.32
523	558	1.172180	ACGATGGCACCCTTGTTGTG	61.172	55.000	0.00	0.00	36.79	3.33
524	559	1.172180	CGATGGCACCCTTGTTGTGT	61.172	55.000	0.00	0.00	36.11	3.72
774	809	1.483424	CGCCTCTTAGCTTAGCGCAC	61.483	60.000	11.47	0.00	42.61	5.34
805	840	2.845752	TAGCGTGATGTTGGGCCGTC	62.846	60.000	0.00	0.00	0.00	4.79
838	873	8.317460	TGCATCGCATTAATTTATTTTTCGTTC	58.683	29.630	0.00	0.00	31.71	3.95
839	874	8.531530	GCATCGCATTAATTTATTTTTCGTTCT	58.468	29.630	0.00	0.00	0.00	3.01
853	1148	6.598753	TTTTCGTTCTCTTCGACTCATTTT	57.401	33.333	0.00	0.00	37.05	1.82
868	1163	5.559770	ACTCATTTTTGGCCCAAATTTAGG	58.440	37.500	10.24	0.00	33.19	2.69
884	1179	1.895020	TAGGCCGAGTTTGCATCCGT	61.895	55.000	0.00	0.00	0.00	4.69
918	1213	2.360980	CCCTCTCCCTGTCCTCGT	59.639	66.667	0.00	0.00	0.00	4.18
920	1215	1.304952	CCTCTCCCTGTCCTCGTCT	59.695	63.158	0.00	0.00	0.00	4.18
959	1254	2.031768	GCCATCGCCATCTCTCCC	59.968	66.667	0.00	0.00	0.00	4.30
968	1263	1.590932	CCATCTCTCCCAATTCGCTG	58.409	55.000	0.00	0.00	0.00	5.18
974	1269	3.012518	CTCTCCCAATTCGCTGTCAAAT	58.987	45.455	0.00	0.00	0.00	2.32
976	1271	2.091541	TCCCAATTCGCTGTCAAATCC	58.908	47.619	0.00	0.00	0.00	3.01
988	1283	2.124695	AAATCCTTCCGCGCTCCC	60.125	61.111	5.56	0.00	0.00	4.30
1062	1358	2.266055	GCCGTGGTCCTGAGGAAG	59.734	66.667	0.96	0.00	31.38	3.46
1063	1359	2.584391	GCCGTGGTCCTGAGGAAGT	61.584	63.158	0.96	0.00	31.38	3.01
1065	1361	1.185618	CCGTGGTCCTGAGGAAGTCA	61.186	60.000	0.96	0.00	31.38	3.41
1133	1432	1.299850	AAAAAGAAGCCGCCGTTGC	60.300	52.632	0.00	0.00	0.00	4.17
1203	1502	2.594592	GCCACGCAACAGGTCCTT	60.595	61.111	0.00	0.00	0.00	3.36
1245	1544	2.432628	CTTCTCGTCACCACCGCC	60.433	66.667	0.00	0.00	0.00	6.13
1246	1545	3.220999	CTTCTCGTCACCACCGCCA	62.221	63.158	0.00	0.00	0.00	5.69
1269	1568	1.378882	CCAACATGGGCTCATCGGTG	61.379	60.000	0.00	1.19	32.67	4.94
1310	1609	1.421410	GAATCGTCGCGCCTGTCAAT	61.421	55.000	0.00	0.00	0.00	2.57
1341	1640	0.393077	CATACGGGTGCCTTCCTAGG	59.607	60.000	0.82	0.82	45.02	3.02
1353	1652	0.970937	TTCCTAGGCACGACCCAGAG	60.971	60.000	2.96	0.00	40.58	3.35
1389	1688	4.043100	TCGCCTCGGGACCTCTCA	62.043	66.667	0.00	0.00	0.00	3.27
1390	1689	3.827898	CGCCTCGGGACCTCTCAC	61.828	72.222	0.00	0.00	0.00	3.51
1392	1691	2.037367	CCTCGGGACCTCTCACCA	59.963	66.667	0.00	0.00	0.00	4.17
1474	1773	3.588511	TGGCCAGCCAATCCACCA	61.589	61.111	9.42	0.00	44.12	4.17
1480	1780	3.499737	GCCAATCCACCAGACGCG	61.500	66.667	3.53	3.53	0.00	6.01
1555	1857	2.779951	TTCGATGGTGCCGACACTGG	62.780	60.000	0.81	0.00	46.57	4.00
1591	1893	5.060077	ACGACGTACTACAACAATTTCATCG	59.940	40.000	0.00	0.00	0.00	3.84
1622	1954	0.616395	TATGAGGGTGGCCAAGACGA	60.616	55.000	7.24	0.00	0.00	4.20
1643	1975	2.034687	CTGCCAAGACACCCAGGG	59.965	66.667	2.85	2.85	0.00	4.45
1650	1997	4.660938	GACACCCAGGGCCACCAC	62.661	72.222	4.91	0.00	40.13	4.16
1664	2011	1.597027	ACCACGGCCAAGAAACTCG	60.597	57.895	2.24	0.00	0.00	4.18
1683	2030	0.178990	GAGACCAAGGCAACCAAGGT	60.179	55.000	0.25	0.25	36.03	3.50
1684	2031	1.073284	GAGACCAAGGCAACCAAGGTA	59.927	52.381	0.00	0.00	34.05	3.08
1691	2043	0.690762	GGCAACCAAGGTAGGAGTCA	59.309	55.000	0.00	0.00	0.00	3.41
1759	2114	1.680735	TGCACAAAAGAGGCGACAAAT	59.319	42.857	0.00	0.00	0.00	2.32
1823	2180	1.067635	GCGAACTTGGATGGCAATTGT	60.068	47.619	7.40	0.00	0.00	2.71
1856	2213	0.181587	TCCGACACCAAGCAAAAGGA	59.818	50.000	0.00	0.00	0.00	3.36
1909	2270	4.529377	ACTTCCATGAACGTAGGAGGTTTA	59.471	41.667	7.80	0.00	38.43	2.01
1934	2295	5.991606	TGTCCTACAAATTTGAGAGTGACAG	59.008	40.000	24.64	8.04	31.11	3.51
1952	2321	2.126965	GACCGACGTGTGACTCCG	60.127	66.667	0.00	0.00	0.00	4.63
1959	2328	1.266175	GACGTGTGACTCCGAAAGAGA	59.734	52.381	0.00	0.00	46.50	3.10
1962	2331	1.266175	GTGTGACTCCGAAAGAGACGA	59.734	52.381	0.00	0.00	46.50	4.20
2019	2388	4.527816	GCCTCTCATGAGAATATCTCTGGT	59.472	45.833	25.09	0.00	43.73	4.00
2022	2391	5.380900	TCTCATGAGAATATCTCTGGTCGT	58.619	41.667	23.17	0.00	43.73	4.34
2025	2394	6.299922	TCATGAGAATATCTCTGGTCGTACT	58.700	40.000	8.68	0.00	43.73	2.73
2044	2413	1.388093	CTGTGAGCGTTCTTGACATCG	59.612	52.381	0.00	0.00	0.00	3.84
2151	2525	7.629157	TGGTTTGAACTCCATATGTATGAAGA	58.371	34.615	1.24	0.00	35.75	2.87
2389	2765	4.347876	TGAACGGGATCACATCATTAGGAT	59.652	41.667	0.00	0.00	36.39	3.24
2441	2817	7.306574	CGTTAGCTTAGCATATTGATCGTTCAA	60.307	37.037	11.13	11.13	45.57	2.69
2556	2932	6.869388	TGCTATCAAACGTCACAACATAACTA	59.131	34.615	0.00	0.00	0.00	2.24
2561	2937	3.921677	ACGTCACAACATAACTAGGTGG	58.078	45.455	0.00	0.00	0.00	4.61
2578	2954	8.728596	ACTAGGTGGTTATAAAGATGCTCTAT	57.271	34.615	0.00	0.00	0.00	1.98
2624	3000	4.532126	TGGGTTGGCATAGATCGAGATTAT	59.468	41.667	0.00	0.00	0.00	1.28

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
55	56	5.078411	ACGAATCTAAGCATCAGAACTGT	57.922	39.130	0.00	0.00	0.00	3.55
103	133	0.596082	AACAACATAACGGCACCTGC	59.404	50.000	0.00	0.00	41.14	4.85
136	167	2.359975	GAAGGGGTTGGAGCCACG	60.360	66.667	0.00	0.00	37.54	4.94
157	188	2.186826	CGGATTGGGCGATGGGTTC	61.187	63.158	0.00	0.00	0.00	3.62
391	422	2.357517	CCCTTGAAGTCGCACGCT	60.358	61.111	0.00	0.00	0.00	5.07
416	447	2.885861	GTCGCTGGAGGTGACGAT	59.114	61.111	0.00	0.00	44.05	3.73
448	479	8.193250	TCAGAAACTTCACAAACTGTTAGTAC	57.807	34.615	0.00	0.00	0.00	2.73
484	515	2.202987	GCTCCTCCGATGCCACAG	60.203	66.667	0.00	0.00	0.00	3.66
505	540	1.172180	ACACAACAAGGGTGCCATCG	61.172	55.000	0.00	0.00	39.87	3.84
510	545	1.639280	CAACAACACAACAAGGGTGC	58.361	50.000	0.00	0.00	39.87	5.01
522	557	0.820074	CCCCGTAACCTGCAACAACA	60.820	55.000	0.00	0.00	0.00	3.33
523	558	1.520600	CCCCCGTAACCTGCAACAAC	61.521	60.000	0.00	0.00	0.00	3.32
524	559	1.228306	CCCCCGTAACCTGCAACAA	60.228	57.895	0.00	0.00	0.00	2.83
656	691	0.249238	CGGCAGTATGAGCAGTCCTC	60.249	60.000	0.00	0.00	39.69	3.71
805	840	5.398176	AAATTAATGCGATGCAATGCAAG	57.602	34.783	13.45	10.90	45.45	4.01
838	873	2.162408	GGGCCAAAAATGAGTCGAAGAG	59.838	50.000	4.39	0.00	36.95	2.85
839	874	2.159382	GGGCCAAAAATGAGTCGAAGA	58.841	47.619	4.39	0.00	0.00	2.87
868	1163	2.480555	CACGGATGCAAACTCGGC	59.519	61.111	0.00	0.00	0.00	5.54
909	1204	1.384989	ATACGGGCAGACGAGGACAG	61.385	60.000	0.00	0.00	37.61	3.51
938	1233	2.969238	GAGATGGCGATGGCGTGG	60.969	66.667	0.00	0.00	41.24	4.94
941	1236	2.356793	GGAGAGATGGCGATGGCG	60.357	66.667	0.00	0.00	41.24	5.69
948	1243	0.179034	AGCGAATTGGGAGAGATGGC	60.179	55.000	0.00	0.00	0.00	4.40
959	1254	3.728864	CGGAAGGATTTGACAGCGAATTG	60.729	47.826	0.00	0.00	0.00	2.32
968	1263	1.706287	GGAGCGCGGAAGGATTTGAC	61.706	60.000	8.83	0.00	0.00	3.18
988	1283	4.899239	GGGCATGTCGAGAGGGCG	62.899	72.222	14.36	0.00	0.00	6.13
992	1287	2.105128	GGTCGGGCATGTCGAGAG	59.895	66.667	12.26	0.00	37.31	3.20
994	1289	4.530857	GGGGTCGGGCATGTCGAG	62.531	72.222	12.26	0.00	37.31	4.04
1016	1312	3.943137	ATGACTGGGAAGGGGGCGA	62.943	63.158	0.00	0.00	0.00	5.54
1048	1344	2.368875	TCTTTGACTTCCTCAGGACCAC	59.631	50.000	0.00	0.00	0.00	4.16
1055	1351	2.172505	TGCACCTTCTTTGACTTCCTCA	59.827	45.455	0.00	0.00	0.00	3.86
1082	1378	3.838565	CTCTAGGCATCCCTCTACTTCA	58.161	50.000	0.00	0.00	41.75	3.02
1203	1502	1.267121	GCTCTTGGTACCCTGACAGA	58.733	55.000	10.07	2.33	0.00	3.41
1227	1526	3.112709	GCGGTGGTGACGAGAAGC	61.113	66.667	0.00	0.00	0.00	3.86
1256	1555	3.626996	CTTGCCACCGATGAGCCCA	62.627	63.158	0.00	0.00	0.00	5.36
1283	1582	2.508439	GCGACGATTCCGGAAGCA	60.508	61.111	30.16	4.82	40.78	3.91
1341	1640	2.048127	GACACCTCTGGGTCGTGC	60.048	66.667	0.00	0.00	45.41	5.34
1353	1652	2.159226	CGACATGGAGAAGTAGGACACC	60.159	54.545	0.00	0.00	0.00	4.16
1361	1660	1.513158	CGAGGCGACATGGAGAAGT	59.487	57.895	0.00	0.00	0.00	3.01
1389	1688	2.399396	CGAAGTCGTGCATTTTTGGT	57.601	45.000	0.00	0.00	34.11	3.67
1416	1715	4.269523	GCAGGCACCACTGGGACA	62.270	66.667	0.00	0.00	38.90	4.02
1422	1721	2.490270	GATCAAGGGCAGGCACCACT	62.490	60.000	0.00	0.00	0.00	4.00
1555	1857	3.613702	CGTCGTGTTATCCGGCGC	61.614	66.667	0.00	0.00	46.65	6.53
1591	1893	4.322650	GCCACCCTCATAGATCATCTCTTC	60.323	50.000	0.00	0.00	35.28	2.87
1622	1954	4.643387	GGGTGTCTTGGCAGCGGT	62.643	66.667	0.00	0.00	37.71	5.68
1650	1997	1.014564	GGTCTCGAGTTTCTTGGCCG	61.015	60.000	13.13	0.00	0.00	6.13
1664	2011	0.178990	ACCTTGGTTGCCTTGGTCTC	60.179	55.000	0.00	0.00	0.00	3.36
1683	2030	3.898482	TCATCCTCGATGTTGACTCCTA	58.102	45.455	1.80	0.00	40.55	2.94
1684	2031	2.739943	TCATCCTCGATGTTGACTCCT	58.260	47.619	1.80	0.00	40.55	3.69
1691	2043	5.964958	AAACAATGTTCATCCTCGATGTT	57.035	34.783	0.00	0.00	40.55	2.71
1759	2114	0.541063	TGTAGCTCCCGTCCTCACAA	60.541	55.000	0.00	0.00	0.00	3.33
1823	2180	3.370103	GGTGTCGGATTTGGGATCTTGTA	60.370	47.826	0.00	0.00	0.00	2.41
1856	2213	5.188751	TGGACCCTCTTTCAAAATGTTGTTT	59.811	36.000	0.00	0.00	36.07	2.83
1909	2270	6.533730	TGTCACTCTCAAATTTGTAGGACAT	58.466	36.000	23.52	9.05	0.00	3.06
1934	2295	2.257676	GGAGTCACACGTCGGTCC	59.742	66.667	0.00	0.00	0.00	4.46
1952	2321	5.597813	TTGAATGAAAGCTCGTCTCTTTC	57.402	39.130	14.92	14.92	45.78	2.62
1959	2328	4.074970	ACTCCAATTGAATGAAAGCTCGT	58.925	39.130	7.12	0.00	0.00	4.18
1962	2331	3.575256	TGCACTCCAATTGAATGAAAGCT	59.425	39.130	7.12	0.00	0.00	3.74
1971	2340	4.734398	AAACTTGTTGCACTCCAATTGA	57.266	36.364	7.12	0.00	35.55	2.57
2019	2388	1.605232	TCAAGAACGCTCACAGTACGA	59.395	47.619	0.00	0.00	0.00	3.43
2022	2391	3.575630	GATGTCAAGAACGCTCACAGTA	58.424	45.455	0.00	0.00	0.00	2.74
2025	2394	1.000717	TCGATGTCAAGAACGCTCACA	60.001	47.619	0.00	0.00	0.00	3.58
2044	2413	6.486993	GGGAAGGAATTGTATACCATGTCTTC	59.513	42.308	16.18	16.18	0.00	2.87
2288	2662	6.366340	AGCTAGTCAAGTAGAGGCATACTAA	58.634	40.000	3.23	0.00	34.90	2.24
2333	2707	6.716628	ACAACACATGTCTATGGTCAGAAAAT	59.283	34.615	0.00	0.00	37.96	1.82
2337	2711	4.890158	ACAACACATGTCTATGGTCAGA	57.110	40.909	0.00	0.00	37.96	3.27
2389	2765	4.227073	TGGGTCTTGTCCATCACATCATTA	59.773	41.667	0.00	0.00	33.90	1.90
2578	2954	1.933021	AACACCATCGGAGACACCTA	58.067	50.000	0.00	0.00	42.51	3.08
2624	3000	4.028852	CGATACTCGGAGTGACAAATCA	57.971	45.455	20.58	0.00	36.00	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.