>input_sequence_71218
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---------------ATGCCCGACCCCGCCATCGCCCCCTTCCCAGTCATGGCCGCCCACGCCGTGGTCCTGAGGAAGTC
AAAGAAGGTGCACACCTTGAAGTAGAGGGATGCCTAGAGCAAG---GTGGAGAAAAAAGAAGCCGCCGTTGCAGGCGCTT
CGGCCCAGGTCGCTGCTGCGGAGAGCGTTGCCCTCGCCGCCAAGGCCACGCAACAGGTCCTTCTGTCAGGGTACCAAGAG
CCGACGCTTCTCGTCACCACCGCCACCGCCAACATGGGCTCATCGGTGGCAAGCCCGCCCATGCTTCCGGAATCGTCGCG
CCTGTCAATAATGCCGCCGGCATACGGGTGCCTTCCTAGGCACGACCCAGAGGTGTCCTACTTCTCCATGTCGCCTCGGG
ACCTCTCACCAAAAATGCACGACTTCGTGCCGGCTGTCCCAGTGGTGCCTGCCCTTGATCTCAACGCCACACCGATGGCC
AGCCAATCCACCA-GACGCGAAGGGAGCGCCCATGGGCGATCCCCATTGACAACTTTCCTGACGCCTCCTTCCTATTCGA
TGGT--GCCGACACTGGCGCCGGATAACACGACGTACTACAACAATTTCATCGAAGAGATGATCTATGAGGGTGGCCAAG
A------------------------------CGACCGCTGCCAAGACACCCAGGGCCA---------------CCACGGC
CAAGAAACTCGAGACCAAGGCAACCAAGGTAG-----GAGTCAACATCGAGGATGA------------------------
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----------------------------------------
>chr4A_1_TraesCS4A01G175800
ATGGCTGTCTAAAGTATTACTAGTATAACTCAGTTGAGAATCTAAAGTATGGCCGACAG---------------------
--------TTCTGATGCTTAGATTCGTCGCTCCTGTGCTGTTACCTGACTTAGCAGGTG-CCGTTATGTTGTTTTGCATT
GCAGTCCGTGGCTCCAACCCCTTCGCCGAACCCATCGCCCAATCCGAGCCCTAAGCCCGCGCCGTCGGGAGGCGGGAAGT
GGTGCGTCGCCAAGGACGGCGCCAACGGGACGGACCTGCAGAACAACATCAACTACGCCTGCGGCTTCGTAGACTGCAAG
CCCATACAGAGCGGCGGCGCGTGCTTCAGCCCCAACAGCCTGCAGGCCCATGCGTCGTACGTGATGAACGCCTACTACCA
GGCCAACGGCCACACCGACTTAGCGTGCGACTTCAAGGGCACCGGCATCGTCACCTCCAGCGACCCCAGTAAGTCCATGT
ACTAACAGTTTGTGAAGTTTCTGAACCTGGCTGCCT----GTGGCATCGGAGGAGCTGACGATGGCACCCTTGTTGTGTT
GTTGCAGGTTACGGGGGTTGCAAGTACGTCTCCTGACGGTACGCAGCAAGCCACGGCAGTACGAGGGCAGGGGGGCCAGC
CTCCAGCCCACTACCATCTCCAGCTCGGAGCCGCGGTGGCGGCAGCGACGGAGGACTGCTCATACTGCCGGGCTTGCGCC
ATATTCTTCTATACTCGTGTCTGACAGCCATGCTGCTTCTTCCTTTCTAGTCATATAAATATCAATCATCGCCTCTTAGC
TTAGCGCACACAGGCGGCTGTAGCGTGATGTTGGGCCGTCTTGCATTGCATCGCATTAATTTATTTTTCGTTCTCTTC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GACTCATTTTTGGCCCAAATTTAGGCCGAGTTTGCATCCGTGCGGATGCCCTCGACGCCCTC
TCCCTGTCCTCGTCTGCCCGTATGTGGCACTACCACGCCATCGCCATCTCTCCCAATTCGCTGTCAAATCCTTCCGCGCT
CCCGCCCTCT-CGACATGCCCGACCCCGCCATCGCCCCCTTCCCAGTCATGGCCGCCCACGCCGTGGTCCTGAGGAAGTC
AAAGAAGGTGCACACCTTGAAGTAGAGGGATGCCTAGAGCAAG---GTGGAGAAAAAAGAAGCCGCCGTTGCAGGCGCTT
CGGCCCAGGTCGCTGCTGCGGAGAGCGTTGCCCTCGCCGCCAAGGCCACGCAACAGGTCCTTCTGTCAGGGTACCAAGAG
CCGACGCTTCTCGTCACCACCGCCACCGCCAACATGGGCTCATCGGTGGCAAGCCCGCCCATGCTTCCGGAATCGTCGCG
CCTGTCAATAATGCCGCCGGCATACGGGTGCCTTCCTAGGCACGACCCAGAGGTGTCCTACTTCTCCATGTCGCCTCGGG
ACCTCTCACCAAAAATGCACGACTTCGTGCCGGCTGTCCCAGTGGTGCCTGCCCTTGATCTCAACGCCACACCGATGGCC
AGCCAATCCACCA-GACGCGAAGGGAGCGCCCATGGGCGATCCCCATTGACAACTTTCCTGACGCCTCCTTCCTATTCGA
TGGT--GCCGACACTGGCGCCGGATAACACGACGTACTACAACAATTTCATCGAAGAGATGATCTATGAGGGTGGCCAAG
A------------------------------CGACCGCTGCCAAGACACCCAGGGCCA---------------CCACGGC
CAAGAAACTCGAGACCAAGGCAACCAAGGTAG-----GAGTCAACATCGAGGATGAACATTG--TTTAAGAGGAGCTATC
TCATCAAGCCAATGCACAAAAGAGGCGACAAA-TTGTGAGGACGGGAGC-TACACAAAGGATGATGGCAAGTTAATTTGC
GAA-CTTGGATGGCAATTGTACAAGATCCCAAATCCGACACCAAGCAAAAGGAAACAACATTTTGAAAGAGGGTCC----
ATACATACTTCCATGAACGTAGGAGGTTTATGTCCTACAAATTTGAGAGTGACAGGACCGAC--------GTGTGACTCC
GAAAGAGACGAGCTTTCATTCAATTGGAGTGCAACAAGTTTTATGCCTCTCATGAGAATATCTCTGGTCGTACTGTGAGC
GTTCTTGACATCGAAGACATGGTATACAATTCCTTCCCTTGTTCATATGAGCTTGATGCCATG-TCGTC----CTCCTGT
GCATATGAATGTATCTTGTTGGTTTGAACTCCATATGTATGAAGAAAATATGCCCTAAATGTAATAATAAAGTTGTTATT
TATATTTCCTTATATCATGCTAAATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAACTTAGTACATGTGTGAATA
CATAGACAAAACAGAATGTCCTTAGTATGCCTCTACTTGACTAGCTTGTTAATCAAAGATGGTTAAATTTTCTG-ACCAT
AGACATGTGTTGTCATTTGATGAACGGGATCACATCATTAGG-ATAATGATGTGATGGACAAGACCCATCCGTTAGCTTA
GCATATTGATCGTTCAATTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTCTGACTATGAGATTATGCAACT
CCCGAATACCGGAGGAACACCTTGTGTGCTATCAAACGTCACAACATAACTAGGTGGTTATAAAGATGCTCTATAGGTGT
CTCCGATGGTGTTTGTTGGGTTGGCATAGATCGAGATTATGATTTGTCACTCCGAGTATCGGAGAGGTATCTCTGGGCCC
TCTCGGTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>chr4B_8
TCTGAATTATT---------TAGTATAACTCAGTTGAGAATCTAAAGTATGGCCGTCAGTTGTACTTGCTGTTTATTTAT
CCTGGCAGTTATGATGCTTAGATTCGTAGCTCCTGTGCTGTTACCTGACTTACCAGGTGTCTTGTGTTG---TTTGCATT
GCAGTCTGTGGCTCCAACCCCTTCGCCAAATCCATCGCCCAATCCGAGCCCCAAGCCCTCGCCGTCGGGAGGCGGGAAGT
GGTGCGTCGCCAAGGACGGCGCCAACGGGACGGACCTGCAGAACAACATCAACTATGCCTGCGGCTTCGTAGACTGCAAG
CCCATACAGAGCGGCGGCGCGTGCTTCAGCCCCAACAGCTTGCAGTCTCATGCCTCGTACGTGATGAACGCCTACTACCA
GGCCAACGGCCACACCGACTTGGCGTGCGACTTCAAGGGCACCGGCGTCGTCACCTCCAGCGACCCCAGTAAGCCCATAT
ACTAACAGTCTGTGACGTTTCTGAACCTGGCTGCGTGTACGTAGCAGCGGAGGAGCTGATGATGCCACCCTTGCTG---T
GTTGCAGGTTACGGGGGTTGCAAGTACGTCTCCTGACGGTACGCAGCAAGCCACGGCAGTACGAGGGCAGGGGGCCCAGC
CTCCAGCCCACTACCATCTCCAGCTCGGAGCCGCGGTGGCGGCAGCGACGCAGGACTGCTCATACTGCCGGGCTTGCGCC
ATATTCTTCTATACTCGTGTCTGACAGCCATGCTGCTTCTTCCTTTCTAGTCATATAAATATCAATCATCGCCTCTTAGC
TTAGCGCAGACAGGCGGCTGTAGCGTGATGTTGAGCCGTATTGCATTGCACCGCATTAATTTATTTTTCGTTACCTTCTG
CGCTTGTCATTGCATTCCATGCAGAAAATACAAGAAACAAAAAGAGCAAGCCTTGCTGTGTCTCTGTGCTTTGTGGTCAT
TTTTCTCCTTTGAATCCTAGAATCTACATACAGAACATGACCCATCCTCAAAGCCAGGCCTTAGGTTGACTCCAACAGGG
CGACCCATTTGATCCGCTTGTGTCTGTTTGGATTCGTGTCGACGACAAGAAACACGTGGCGACGCAAGCTGACGGTTGTC
CGATTTTTCGTTTGCCAGGACTCATTTCTGGCCCAAATTTAGACTGAGTTTGCATCCGCGCGGATGCCCTCGACGCCCTC
TCCTTGTCCTCGCCCGCCCGTATGTGGCACTAGCATGCCATCACCATCTCTCCTAATTCGCTCTCAAACCTTTCCGCGCT
CCTGCCATGGCCGACATGCCCGACCCCGCCACCGCCCCCTTCCCGGTCATGGCCGCCCACGCCATGGTCCCGAGGAATCC
GAAGAAGGTGCACACCTCGAAGGAAAGGGATGCCTAGAGCAAGGACGTGGAGAAAAAAGAAGCCGCCGCCGTAGGCGCTT
CGGCCCAGGTCGCTGCTGCGGAGAGCGTTGCCCTCATCGCCAAGGCCACGCAACAGGTCCTCCTGTCAGGGTACCAAGAG
CCGACCCTTCTCGTCGGCACCGCTGCCGCCAACACGGGCTCATCGGTTGCAAGCCCGCCCAGGCTTTCGGAATCGTCGCG
CCTGTCAACAATGCCGCCGGCATACGGGTGGCTTCCTAGACATGACCCGGATGTGTCCTGCTTTTCCATGTCACCTCGGG
ACCTCTCGTCGAAAATGCACGACTTCATGTCGGCCGTCCCCGTGGTGCCTGCCCTTGATCTCAACGCCACACCGATAGCC
AGCCAATCCACCGGGACGCAAAGGGTGCGCCCATGGGCGATCCCCATTGACAACTTTCCTGACGCCTCCTTCCTATTCGA
TGGTATGCCAACACCGACGCCGGATAACACGACGTACTACAACAATTTCATCAGAGAGATGATCTATGAGGGTGGCCAAG
AGTATGATGCCGACAAGACTCAAAGCCATGACAGCCGCTGCCAAGACACCCAGGACCA---------------CCAAGGC
CAAGAA-------------------------G-----GACTCGACATCGAGGATGAACATTG--TTTAAGAGGAGCTA-C
TTATCAAGCCAATGCACAAAAGAGGCGACAAA-GTGTGAGGGCGGGAGC-TACACAAAGGATGATGGCAAGTTAATTTGC
GAA-CTTGGATGGCAATTGGACAAGATCCCAAATCCGACACCGAGCAAAATGGAACAACATTTTGGAAGAGGGTCC----
ATACATACTTCCGTGAACGTAGGAGGTTTGTGTCCTACAAATTTGAGAGTGACATGACCGAC--------GTGTGACTCC
AAAAGAGGCGGGCTTTCATCCAATTGGAGTGCAACAAGTTTTATGCCTCTCATGAGAATATCTCTGGCTGGACCGTGAGC
GTTCTTGACATCAAAGACATGGTATACAATTCCTTCCCTTGTTCATATGAGCTTTATGCCATG-TCGTC----CTTCTGT
GCATATGAATGTATCTTGTTGGTTTGAACTCCATATGTA-----------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>chr4D_57
--------------------------------------------------------------------------------
-----CAATTCTGATGCTTAGATTCGTCGCTCCTGTACTATTACCTGACTTACCAGGTGCCCGTTATGTTGTTTTGCCTT
GCAGTCTGTAGCTCCAAACCCTTCGCCAAGCCCATCGCCCAATCCGAGCCCCAAGCCCTCGCCGTCCGGAGGCGGGAAGT
GGTGCGTCGCCAAGGACGGCGCCAACGGGACGGACCTGCAGAACAACATCAACTACGCCTGCGGCTTCGTAGACTGCAAG
CCCATACAGGGCGGCGGCGCGTGCTTCAGCCCCAACAGCCTGCAGTCTCATGCCTCGTACGTGATGAACGCCTACTACCA
GGCCAACGGCCACACCGACTTGGCGTGCGACTTCAAGGGCACCGGCGTCGTCACCTCCAGTGACCCCAGTAAGTCCATAT
A--AACAGTTTGTGAAGTTTCTGAACCTGGCTGGGTGT----GGCATAGGAGGAGCTGATGATGCCACCCTTGTTG---A
GTTGCAGGTTACGGGGGTTGCAAATACGTCTCCTGACGGTACGCAGCAAGCCACGGCAGTACGAGGGCAGGGGCGCCAGC
CTCCAGCCCACTACCATCTCCAGCTCGGAGCCGCGGTGGCGGCAGCGACGCAGGACTGCTCATACTGCCGGGCTTGCGCC
ATATTCTTCTATACTCGTGTCTGACAGCCATGCTGCTTCTTCCTTTCTAGTCATATAAATATCGATAATCGCCTCTTAGC
TTAGCGCAGACAGGCGGCTGTAGCGTGATGTTGGGCCGTATTGCGTTGCATCGCATTAATTTATTTTTCGTT--------
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>chr4D_1275
--------------------------------------------------------------------------------
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----------------------------------------------------GCCCGCCCAAGCTTCTGGAGTCGCTGCG
CATTTCAACAACACCGTCGGCATATGGGTACCTTCCCGGACACGATCCAACCACAACCTGCTTCTCCACGCCGCCTCGGG
GCGGCTCGTCCGAAATGGGTGACTTCGTGCCGGTCGTCCCCGTGGTGCCTGCCCTTGATCTCAACGCCACACTCGTGGCT
TGCCAGTCCACCGGGACACAAAGGAAGCGTCCGCAGGCGATCCCCATGGGCAACTTTCCCGATGCCCGCATCCTATTTGA
TGGTATGCCGACCCTGACGCTGGACGACTCAACGTACTGCAACGATTTCACTAAGGAGATGATTTATGAGGGTGGCCAAG
AGTATGATGTCGAGTAGACTCAAAGCCAAGTCGGTCGCGGCCAAGACACCCATGACCACCAAGGTGAAGTTACCCAAGGC
CAAGAAACTCAAGAGCAAGGCAACCAACAGCAAGATAGAGTTGACATCGACGATGAGCCATTGTTTCACGAGGAGCTATC
TCATCAAGCCAATGCACAAAAGATGCGACAAA-GCGTGAGGATGGGAGGATACACAAAGGATGAGGATAAGTTAATTTGC
GAAGCTTGGATGACAATTGGACAAGATCGCAAAACTAGTGCCGAGCAAAAGGGATTAACATTTTGGAAGCAGGTCC----
ATACATACTTCCATGAGCGTAGAAGGTTTGCGCCCTACAAATTTGGGAGTGACCCTGGTGAC--------GTGTCACTCC
AAAATAGGTGGACCTTCATCCAATTGGAGGGCAACATATTTTGTGGCTCACATGAGAATATCTCCGGCCGG-CCATGAGT
GGCCTTGGCAACAAAGACATGGTATACAATTCCTCCCCTTGTTCATACGAGCTTGATGCCATGGTCGTC----CTCCTAT
GCATATGAAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>chr4A_1648
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------CCAAGGC
CAAGAAACTTAAGACCAAGGCAACCAAGGCTAAGAAAATGTTGACATCAAGGATGAGCCATTGTTTCACGAGGAGCTATC
TCATCAAGCCAATGCACAAAAGAGGCGGCAAAAGCGTGAGGACGATAGGATCTGCGAAGTATGAGGACAAGTTACTTTGT
GAAGCTTGGATGGTAATAGGACAAGATCCCAAAACTGGCGTCGAGCAAAAAGGAACAACATTTTAAAAGAGGGTCC----
ATACATACTTCCGTGAAATTAGAAAGTTTGAGCCCTACGAATTTGAGAGTGACCATGTCACCATGGTGGTGTGTCACTCC
AAAAATGGTGGGCCTTCATCCAACTGGAGTGCAACAAGTTTAGTTCCTCCCATGAGAATATCATCGGCCGACCCATGAGT
GGCATTGGCATCAAACACATGGTATGCAAATCCTTCCCTTGTTCATATGAGCTTGATGCCATG-TCATGCATACTCGTGT
GCATATGAATGTATCTTGTTGGTTCCAACTCCATATGTA-----------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>chr1A_1648
--------------------------------------------------------------------------------
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-------------------------------------------------------------------------CCAAGGC
CAAGAAACTTAAGACCAAGGCAACCAAGGCTAAGAAAATGTTGACATCAAGGATGAGCCATTGTTTCACGAGGAGCTATC
TCATCAAGCCAATGCACAAAAGAGGCGGCAAAAGCGTGAGGACGATAGGATCTGCGAAGTATGAGGACAAGTTACTTTGT
GAAGCTTGGATGGTAATAGGACAAGATCCCAAAACCGGCGTCAAGCAAAAAGGAACAACATTTTAAAAGAGGGTCCATAC
ATACATACTTCCGTGAAATTAGAAAATTTGAGCCCTACGAATTTGAGAGTGACCATGTCACCATGGTGGTGTGTCGCTCC
AAAAATGGTGGGCCTTCATCCAAGTGGAGTGCAACAAGTTTAGTTCCTCCCATGAGAATATCATCGGGCGATCCATGAGT
GGCATTGGCATCAAACACATGGTATGCAAATCATTCCCTTGTTCATATGAGCTTGATGCCATG-TCATGCATACTCGTGT
GCATATGAATGTATCTTGTTGGTTCCAACTCCATATGTA-----------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------
>chr3D_2142
ATGTGAT-------------------------------------------------------------------------
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---------------------------------------TGAAGGAAATATGCCCTAGAGGCAATAATAAAGTTATTATT
TATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAACTTAGTACATGTATGGATA
CATAGACAAAACAGAGTGTCCCTAGTATGCCTCTACTTGACTAGCTCGTTAATCAAAGATGGTTAAGTTTCCTG-ACCAT
AGACATGTGTTGTCATTTGATGAACGGGATCACATCATTAGG-AGAATGATGTGATGGATAAGACCCATCCGTTAGCTTA
GCATGTTGATCGTTCAGTTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTTTGACTATGAGATTATGCAACT
CCCGAATACCGGAGGAACACCTTGTGTGCTATCAAACGTCGCAACGTAACTGGGTGATTATAAAGATGCTCTACAGGTGT
CTCCGAAGGTGTTTGTTGGGTTGGCATAGATCGACATTAGGATTTGTCACTCCGAGTATCGGAGAGGTATCTCTGGGCCC
TCTCGGTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>chr3D_2142
--------------------------------------------------------------------------------
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----------------------------------ATGTGTGAAGGAAATATGCCCTAGAGGCAATAATAAAGTCGTTATT
TATATTTCCTTGTATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACCAGAAACTTAGTACATGTGTGAATA
CATAGACAAAATAGAATGTCCCTAGTATGCCTCTACTTGACTAGCTCGTTAATCAAAGATGGTTAAGTTTCCTG-ACCAT
AGACATGAGTTGTCATTTGATGAACGGGATCACATCATTAGG-AGAATGATGTGATGGACAAGACCCATCCATTATCTTA
GCATGTTGATCGTTCAGTTTTATTGCTATTGCTTTCTTCATGACTTGTACATATTCCTTTGACTATGAGATTATGCAACT
CCCGAATACCGGAGGAACACCTTGTGTGCTATCAAACGTCACAACATAACTGGGTGATTATAAAGATGCTCTACAGGTGT
CTCCGAAGGTGTTTGTTGGGTTGGCATAGATCGAGATTAGGATTTGTCACTCCGAGTATCGGAGAGGTATCACTGGGCCC
TCTCGGTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>chr1D_2144
--------------------------------------------------------------------------------
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------------------------------------GTATGAAGGAAATATGCCCTAGAGGCAATAATAAAGTTGTTATT
TATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAACTTAGTACATGTGTGAATA
CATAAACAAAACAGAATGTCCCTAGTATGCCTCTACTTGACTAGCTCGTTAATCAAAGATGGTTAAGTTTACTAAACCAT
TGACATGTGTTGTCATTTGATGAACGGGATCACATCATTGGG-AGAATGATGTGATGGACAAGACCCATCCGTTAGCTTA
GCATATTGATCGTTCAGTTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTCTGACTATGAGATTATGCAACT
CCCAAATACCGGAGGAACACTTTGTGTGCTATTAAACGTCACAACGTAACTGGGTGATTATAAAGATGCTCTACAGGTGT
CTCCGATGGTGTTTGTTGAGTTGGCATATATCGAGATTAGGATTTGTCACTCCGTGTATCGGAGAGGTATCTCTGGGCCC
TCTCGGTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>chr7D_2144
GTATTG--------------------------------------------------------------------------
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-----------------------------------------AAGGAAATATGCCCTAGAGGCAATAATAAAGTTGTTATT
TATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAACTTAGTACATGTGTGAATA
CATAGACAAAACAGAGTGCCCCTAGTATGCCTCTACTTGACTAGCTCGTTAATCAAAGATGGTTAAGTTTCCTG-ACCAT
AGACATGTGTTGTCATTTGATGAACGGGATCACATCATTA-G-AGAATGATGTGATGGACAAGACCCATCCGTTAGCTTA
GCATTATGATCGTTTAGTTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTCTGCCTATGAGATTATGCAACT
CCCGAATACCGGAGGAACACCTTGTGTGCTATCAAACGTCACAACGTAACTGGGTGATTATAAAGATGCTCTACAGGTGT
CTCCGAAGGTGTTTGTTGGGTTGGCATAGATCAAGATTAGGATTTGTCACTCCGAGTATCGGAGAGGTATCTCTGGGCCC
TCTCGTTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>chr7D_2145
--------------------------------------------------------------------------------
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-------------------------------------TATGAAGGAAATATGCCCTAGAGGTAATAATAAAGTTGTTATT
TATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAACTTAGTACATGTGTGAATA
CATAGACAAAACAGAGCGTCCCTAGTATGCCTCTACTTGACTAGCTCGTTAATCAAAGATGGTT-AGTTTCCTG-ACCAT
AGACATGTGTTGTCATTTGATGAACGAGATCACATCGTTA-G-AGAATGATGTGATGGACAAGACCCATCCGTTAGCTTA
GCATAATGATCGTTAAGTTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTCTAACTATGAGATTATGCAACT
CCCGAATACCGGAGGAACACCTTGTGTGCTATCAAACGTCACAACATAACTGGGTGATTATAAAGATGCTCTACAGGTGT
CTCCGAAGGTGTTTGTTGGGTTGGCATAGATCAAGATTAGGATTTGTCACTCCGAGTATCGGAGAGGTATCTCTGGGCCC
TCTCGGTAATCCACATCACTATAAGCCTTGCAAGCAATGT
>chr5D_2146
--------------------------------------------------------------------------------
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--------------------------------------ATGAAGGAAATATGC-CTAGAGGCAATAATAAAGTTGTTATT
TATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAAAATTGTATTAACCGGAAACTTAGTACATGTGTGAATA
CATAGACAAAACAGAATGTCCCTAGTATGCCTCTACTTGACTAGCTTGTTAATCAAAGATGGTTAAGTTTCCTG-ACCAT
AGACATGTGTTGTCATTTGATGAACAGGATCACATCATTA-GGAGAATGATGTGATGGACAAGACCCATCGGTTAGGTTA
GCATGTTGATCGTTCAGTTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTTTGACTATGAGATTATGCAACT
CCCGAATACCGGAGGAACACCTTGTGTGCTATCAAACGTCACAACGTAACTGGGTGATTACAAAGATGCTCTACAGGTGT
CTCCGAAGGTCTTTGTTGGGTTGGCATAGATCGAGATTAGGATTTGTCACTCCGAGTATCGGAGAGGTATCTCTGGGCCC
TCTCGGTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>chr5D_2146
--------------------------------------------------------------------------------
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--------------------------------------ATGAAGGAAATATGCCCTAGAGGCAATAATAAAGTTGTTATT
TATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAACTTAGTACATGTGTGAATA
CATAGAC-AAACAGAGTGTCCCTAGTATGCCTCTACTTGACTAGCTCGTTAATCAAAGATGGTTAAGTTTCCTG-ACCAT
AGACATGTGTTGTCATTTGATGAACGGGATCACATCATTA-G-AGAATGATGTGATGGACAAGACCCATCCATTAGCTTA
GCATAATGATCGTTAAGTTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTCTGACTATGAGATTATGCAACT
CCCGAATACCGGAGGAACACCTTGTGTGCTATCAAACGTCACAACGTAACTGGGTGATTATAAAGATGCTCTACAGGTGT
CTCTGAAGGTGTTTGTTGGGTTGCCATAGATCGAGATTAGGATTTTTCACTCCGAGTATCGGAGAGGTATCTCTGGGCCC
TCTCGGTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>chr5D_2147
--------------------------------------------------------------------------------
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---------------------------------------TGAAGGAAATATGCCCTAGAGGCAATAATAAAGTTGTTATT
TATATTTGCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACCGGAAACTTAGTACATGTGTGAATA
CATAGACGAAACAGAGTGTCCCTAGTATGCCTCTACTTGACTAGCTCGTTAATCAAAGATGGTTAAGTTTCCTG-ACCAT
AGACATGTGTTGTCATTTGATGAACGGGATCACATCATTA-G-AGAATGATGTGATGGACAAGACCCATCCGTTAGCTTA
GCATAATGATCGTTAAGTTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTCTGACTATGAGATTATGCAACT
CCCGAATGCCGGAGGAACACCTTGTGTGCTATCAAACGTCACAACGTAACTGGGTGATTATAAAGATGCTCTACAGGTGT
CTCCGAAGGTGTTTGTTGGGTTGGCATAGATCAAGATTAGGATTTGTCACTCCGAGTATCGGAGAGGTATCTCTGGGCCC
TCTCGGTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>chr1D_2147
--------------------------------------------------------------------------------
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---------------------------------------TGAAGGAAATATGCCCCAGAGGCAATAATAAAGTTGTTATT
TATATTTCCTTATATCATGATAAATGTTTATTATTCATGCTAGAATTGTATTAACAGGAAACTTAGTACATGTGTGAATA
CATAGAC-AAACAGAGTGTCCCTAGTATGCCTCTACTTGACTAGCTTGTTAATCAAAGATGGTTAAGTTTCCTG-ACCAT
AGACATGTGTTGTCATTTGATGAACGGGATCACATCATTA-G-AGAATGATGTGATGGACAAGACCCATCTGTTAGCCTA
GCATAATGATCGTTAAGTTTTATTGCTATTGCTTTCTTCATGACTTATACATATTCCTCTGACTATGAGATTATGCAACT
CCCGAATACCGGAGGAACACCTTGTGTGCTATCAAACGTCACAACATAACTGGGTGATTATAAATATGCTCTACAGGTGT
CTCCGAAGGTGTTTGTTGGGTTGGCATAGATCGAGATTAGGATTTGTCACTCCGAGTATCGGAGAGGTATCTCTGGGCCC
TCTCGGTAATGCACATCACTATAAGCCTTGCAAGCAATGT
>SNPs
----SSS-S-SSSSSSSSSS-----------------------------------S------------------------
----------------------------------------------------S---------------------------
------S--------------------S-----------------------S------S---------------------
--------------------------------------------------------------------------------
---------------------------------------------S-S-----S--------------------------
---------------------S------------------------S-------------------------------S-
----------------------------------S------------------------S----S-----------SSS-
--------------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
--------------------------------------------------------------------------------
--------S------------------------------S--------------------------------SS------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S--------------S-S-------------S---------------------
---S--------S-S-----------------S--S------S----------S--------S-----S-S---------
--S---S-SS---------------------S------------S------------------S------S------SS-
S----------------S----S-S-------------------------------------------SS-S--------
-----------------------------------SS------------------------S------------------
-----S---------SS------SS---------S------------S-------------S------------------
--------S------------------------------S-----------S-------S--------------------
-------SS-S-----------------------S-----S---------------------------------------
------------S------S------------------------------------------------------------
----------------S-----------------------------------S---------------------------
---------------------------------S--------------------S---------------------S---
----------S------------------SS-----------S-------------------------------------
---------------------------------S----------------------------------------------
-------------------S--------------------------------S---------------------------
-----------------------------S------------------------S-------------------------
S------S--S--------S-----------------------------------------------S--S--S------
------------S-------------------------------------------------------------------
--------------------------------------------S------------S-S--------------------
-------------------S------------------------------------------------------------
---------------------S--------------------------------------------S---S---------
--------------------------------------------S-----------------------------------
----------------S---------------------------------------------------------------
---------------------------------------------------S----S----------------S------
---------------------------------------S----------------------------------------
----------------------------------------
>forward_479
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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-----------------------------------------------------------GCGACCCCAGTAAGTCCATG-
--------------------------------------------------------------------------------
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>reverse_2011
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----------GAGACCAAGGCAACCAAGGT--------------------------------------------------
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----------------------------------------
>forward_1640
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--------------------CATACGGGTGCCTTCCTAGG----------------------------------------
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----------------------------------------
>reverse_2954
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-------------------------------------------------------------------------TAGGTGT
CTCCGATGGTGTT-------------------------------------------------------------------
----------------------------------------
