Multiple sequence alignment - TraesCS4A01G172100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G172100 chr4A 100.000 3602 0 0 1 3602 436830683 436827082 0.000000e+00 6652.0
1 TraesCS4A01G172100 chr4D 96.984 1492 41 4 565 2054 130464937 130466426 0.000000e+00 2503.0
2 TraesCS4A01G172100 chr4D 85.498 993 67 34 2651 3602 130467159 130468115 0.000000e+00 965.0
3 TraesCS4A01G172100 chr4D 95.525 514 14 2 2111 2615 130466649 130467162 0.000000e+00 813.0
4 TraesCS4A01G172100 chr4D 90.909 165 11 2 359 520 130463371 130463534 6.060000e-53 219.0
5 TraesCS4A01G172100 chrUn 95.870 1356 44 1 505 1860 53488657 53487314 0.000000e+00 2183.0
6 TraesCS4A01G172100 chrUn 92.105 950 38 9 2110 3039 53486812 53485880 0.000000e+00 1304.0
7 TraesCS4A01G172100 chrUn 92.548 416 19 1 505 920 53490644 53490241 1.440000e-163 586.0
8 TraesCS4A01G172100 chrUn 87.356 435 35 9 91 520 53489090 53488671 6.990000e-132 481.0
9 TraesCS4A01G172100 chrUn 87.356 435 35 9 91 520 53491077 53490658 6.990000e-132 481.0
10 TraesCS4A01G172100 chrUn 93.023 172 8 4 1886 2054 53487008 53486838 7.720000e-62 248.0
11 TraesCS4A01G172100 chr5D 77.098 572 95 27 123 674 61836614 61837169 7.560000e-77 298.0
12 TraesCS4A01G172100 chr5D 86.458 96 7 6 2 93 563660073 563660166 2.290000e-17 100.0
13 TraesCS4A01G172100 chr2D 81.061 264 35 10 182 432 336734787 336734526 2.840000e-46 196.0
14 TraesCS4A01G172100 chr1A 90.123 81 6 1 2 80 176445888 176445808 1.770000e-18 104.0
15 TraesCS4A01G172100 chr7B 89.157 83 4 3 1 79 682977520 682977439 8.230000e-17 99.0
16 TraesCS4A01G172100 chr7B 87.805 82 6 2 2 80 709116608 709116688 3.830000e-15 93.5
17 TraesCS4A01G172100 chr2B 82.727 110 19 0 573 682 528200188 528200079 8.230000e-17 99.0
18 TraesCS4A01G172100 chr2B 86.420 81 9 2 1 80 361652855 361652934 1.780000e-13 87.9
19 TraesCS4A01G172100 chr2B 97.143 35 1 0 235 269 481203569 481203603 3.880000e-05 60.2
20 TraesCS4A01G172100 chr6D 87.805 82 7 3 1 79 408893047 408893128 3.830000e-15 93.5
21 TraesCS4A01G172100 chr6A 86.905 84 6 3 1 80 602356303 602356385 4.950000e-14 89.8
22 TraesCS4A01G172100 chr3B 86.585 82 8 2 1 79 74727832 74727913 1.780000e-13 87.9
23 TraesCS4A01G172100 chr1D 84.444 90 10 4 1 86 439209487 439209398 6.410000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G172100 chr4A 436827082 436830683 3601 True 6652.0 6652 100.000000 1 3602 1 chr4A.!!$R1 3601
1 TraesCS4A01G172100 chr4D 130463371 130468115 4744 False 1125.0 2503 92.229000 359 3602 4 chr4D.!!$F1 3243
2 TraesCS4A01G172100 chrUn 53485880 53491077 5197 True 880.5 2183 91.376333 91 3039 6 chrUn.!!$R1 2948
3 TraesCS4A01G172100 chr5D 61836614 61837169 555 False 298.0 298 77.098000 123 674 1 chr5D.!!$F1 551

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
950 4322 0.240945 CAACACCATTCCGCCAGAAC 59.759 55.0 0.0 0.0 37.29 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2683 6528 0.179045 CTGGTCCTAAAGCCCGATGG 60.179 60.0 0.0 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.893219 AAAAAGGAAGCAAATTCTAAGAAAGG 57.107 30.769 0.00 0.00 38.07 3.11
59 60 6.596309 AAGGAAGCAAATTCTAAGAAAGGG 57.404 37.500 0.00 0.00 38.07 3.95
60 61 4.464244 AGGAAGCAAATTCTAAGAAAGGGC 59.536 41.667 0.00 0.00 38.07 5.19
61 62 4.382040 GGAAGCAAATTCTAAGAAAGGGCC 60.382 45.833 0.00 0.00 38.07 5.80
62 63 3.778265 AGCAAATTCTAAGAAAGGGCCA 58.222 40.909 6.18 0.00 0.00 5.36
63 64 4.159557 AGCAAATTCTAAGAAAGGGCCAA 58.840 39.130 6.18 0.00 0.00 4.52
64 65 4.592778 AGCAAATTCTAAGAAAGGGCCAAA 59.407 37.500 6.18 0.00 0.00 3.28
65 66 5.249163 AGCAAATTCTAAGAAAGGGCCAAAT 59.751 36.000 6.18 0.00 0.00 2.32
66 67 6.440328 AGCAAATTCTAAGAAAGGGCCAAATA 59.560 34.615 6.18 0.00 0.00 1.40
67 68 7.038373 AGCAAATTCTAAGAAAGGGCCAAATAA 60.038 33.333 6.18 0.00 0.00 1.40
68 69 7.278646 GCAAATTCTAAGAAAGGGCCAAATAAG 59.721 37.037 6.18 0.00 0.00 1.73
69 70 8.531146 CAAATTCTAAGAAAGGGCCAAATAAGA 58.469 33.333 6.18 0.00 0.00 2.10
70 71 8.664669 AATTCTAAGAAAGGGCCAAATAAGAA 57.335 30.769 6.18 7.95 0.00 2.52
71 72 8.664669 ATTCTAAGAAAGGGCCAAATAAGAAA 57.335 30.769 6.18 0.00 0.00 2.52
72 73 8.664669 TTCTAAGAAAGGGCCAAATAAGAAAT 57.335 30.769 6.18 0.00 0.00 2.17
73 74 8.664669 TCTAAGAAAGGGCCAAATAAGAAATT 57.335 30.769 6.18 0.00 0.00 1.82
74 75 8.749354 TCTAAGAAAGGGCCAAATAAGAAATTC 58.251 33.333 6.18 0.00 0.00 2.17
75 76 7.559335 AAGAAAGGGCCAAATAAGAAATTCT 57.441 32.000 6.18 0.00 0.00 2.40
76 77 7.175347 AGAAAGGGCCAAATAAGAAATTCTC 57.825 36.000 6.18 0.00 0.00 2.87
77 78 6.956435 AGAAAGGGCCAAATAAGAAATTCTCT 59.044 34.615 6.18 0.00 35.13 3.10
78 79 6.782082 AAGGGCCAAATAAGAAATTCTCTC 57.218 37.500 6.18 0.00 31.02 3.20
79 80 6.084749 AGGGCCAAATAAGAAATTCTCTCT 57.915 37.500 6.18 0.00 31.02 3.10
80 81 7.213178 AGGGCCAAATAAGAAATTCTCTCTA 57.787 36.000 6.18 0.00 31.02 2.43
81 82 7.286313 AGGGCCAAATAAGAAATTCTCTCTAG 58.714 38.462 6.18 0.00 31.02 2.43
82 83 6.016693 GGGCCAAATAAGAAATTCTCTCTAGC 60.017 42.308 4.39 0.00 31.02 3.42
83 84 6.770303 GGCCAAATAAGAAATTCTCTCTAGCT 59.230 38.462 0.00 0.00 31.02 3.32
84 85 7.284261 GGCCAAATAAGAAATTCTCTCTAGCTT 59.716 37.037 0.00 0.00 31.02 3.74
85 86 8.681806 GCCAAATAAGAAATTCTCTCTAGCTTT 58.318 33.333 0.00 0.00 31.02 3.51
100 101 7.275920 TCTCTAGCTTTATTGGTTGGAGATTC 58.724 38.462 0.00 0.00 0.00 2.52
101 102 6.357367 TCTAGCTTTATTGGTTGGAGATTCC 58.643 40.000 0.00 0.00 36.96 3.01
143 144 4.288105 ACATTGATTATTTTTGTGGGCCCA 59.712 37.500 24.45 24.45 0.00 5.36
158 159 1.202627 GGCCCAACATGCAACTTTTGA 60.203 47.619 0.00 0.00 0.00 2.69
171 172 5.997129 TGCAACTTTTGACAGAGATGACATA 59.003 36.000 0.00 0.00 0.00 2.29
188 189 1.563879 CATACTCCACCCATCCAACCA 59.436 52.381 0.00 0.00 0.00 3.67
189 190 1.979809 TACTCCACCCATCCAACCAT 58.020 50.000 0.00 0.00 0.00 3.55
190 191 0.332632 ACTCCACCCATCCAACCATG 59.667 55.000 0.00 0.00 0.00 3.66
191 192 0.332632 CTCCACCCATCCAACCATGT 59.667 55.000 0.00 0.00 0.00 3.21
192 193 0.783206 TCCACCCATCCAACCATGTT 59.217 50.000 0.00 0.00 0.00 2.71
314 319 8.944029 ACATTCAAACTAGATCACTCTTGAATG 58.056 33.333 28.95 28.95 46.47 2.67
433 2441 9.551339 TTACTATTTTAGGGTTGAGGACTTAGA 57.449 33.333 0.00 0.00 0.00 2.10
461 2469 5.292550 TGATTGGGGGTTAGGGTTTTTAT 57.707 39.130 0.00 0.00 0.00 1.40
462 2470 5.026790 TGATTGGGGGTTAGGGTTTTTATG 58.973 41.667 0.00 0.00 0.00 1.90
554 2594 9.445786 GAAGAATTCTAAAACATGTCAAAACGA 57.554 29.630 8.75 0.00 43.23 3.85
561 2601 8.402472 TCTAAAACATGTCAAAACGAATTCACT 58.598 29.630 6.22 0.00 0.00 3.41
646 4018 8.506168 TTATACTTTTAGTTCAAGGGATGCAG 57.494 34.615 0.00 0.00 0.00 4.41
695 4067 2.401766 GCGTGGATGGGTGAAGCAG 61.402 63.158 0.00 0.00 0.00 4.24
806 4178 9.584008 CTAAGAATAGGTACATCTTACCCTACA 57.416 37.037 0.00 0.00 38.33 2.74
843 4215 2.067453 GACATCGCGCGCTGTTAGAC 62.067 60.000 35.67 21.43 0.00 2.59
908 4280 1.735360 CCAGGCGGCCATACATTTG 59.265 57.895 23.09 8.52 0.00 2.32
939 4311 4.377021 CACTACATATACGCCAACACCAT 58.623 43.478 0.00 0.00 0.00 3.55
950 4322 0.240945 CAACACCATTCCGCCAGAAC 59.759 55.000 0.00 0.00 37.29 3.01
1009 4381 1.563577 TTAGTTACCCATGGGCCGCA 61.564 55.000 31.73 10.86 39.32 5.69
1383 4755 1.448540 CCTCAGCAAGCCCTACGTG 60.449 63.158 0.00 0.00 0.00 4.49
1464 4836 1.610554 TAGGGAAAGACGGGAAGCCG 61.611 60.000 0.00 0.00 39.31 5.52
1782 5154 1.153823 CGTGAAGGAGATCGCCGTT 60.154 57.895 10.07 4.98 0.00 4.44
1839 5211 1.309950 CTATCGAGAGCGGGTTCTCA 58.690 55.000 12.12 1.56 43.02 3.27
2002 5654 0.176910 GCAGCCTGAGAGGTAAGGTC 59.823 60.000 0.00 0.00 37.80 3.85
2007 5659 2.159028 GCCTGAGAGGTAAGGTCACATC 60.159 54.545 0.00 0.00 37.80 3.06
2008 5660 3.370104 CCTGAGAGGTAAGGTCACATCT 58.630 50.000 0.00 0.00 41.95 2.90
2010 5662 4.956700 CCTGAGAGGTAAGGTCACATCTAA 59.043 45.833 0.00 0.00 39.52 2.10
2033 5687 1.188863 GCATGCATGGGACTCCTTTT 58.811 50.000 27.34 0.00 0.00 2.27
2034 5688 1.551883 GCATGCATGGGACTCCTTTTT 59.448 47.619 27.34 0.00 0.00 1.94
2055 5710 7.838079 TTTTTACATTATGGATGGATGGAGG 57.162 36.000 0.00 0.00 40.21 4.30
2056 5711 6.778542 TTTACATTATGGATGGATGGAGGA 57.221 37.500 0.00 0.00 40.21 3.71
2058 5713 5.447778 ACATTATGGATGGATGGAGGATC 57.552 43.478 0.00 0.00 40.21 3.36
2060 5715 5.314039 ACATTATGGATGGATGGAGGATCAA 59.686 40.000 0.00 0.00 40.21 2.57
2061 5716 5.509832 TTATGGATGGATGGAGGATCAAG 57.490 43.478 0.00 0.00 36.25 3.02
2062 5717 1.422781 TGGATGGATGGAGGATCAAGC 59.577 52.381 0.00 0.00 36.25 4.01
2064 5719 2.158564 GGATGGATGGAGGATCAAGCAA 60.159 50.000 0.00 0.00 36.25 3.91
2066 5721 1.918262 TGGATGGAGGATCAAGCAAGT 59.082 47.619 0.00 0.00 36.25 3.16
2067 5722 2.309755 TGGATGGAGGATCAAGCAAGTT 59.690 45.455 0.00 0.00 36.25 2.66
2068 5723 2.948315 GGATGGAGGATCAAGCAAGTTC 59.052 50.000 0.00 0.00 36.25 3.01
2069 5724 3.614092 GATGGAGGATCAAGCAAGTTCA 58.386 45.455 0.00 0.00 36.25 3.18
2070 5725 3.726557 TGGAGGATCAAGCAAGTTCAT 57.273 42.857 0.00 0.00 36.25 2.57
2072 5727 3.760151 TGGAGGATCAAGCAAGTTCATTG 59.240 43.478 0.00 0.00 38.42 2.82
2073 5728 3.760684 GGAGGATCAAGCAAGTTCATTGT 59.239 43.478 0.00 0.00 37.89 2.71
2074 5729 4.380233 GGAGGATCAAGCAAGTTCATTGTG 60.380 45.833 0.00 0.00 37.89 3.33
2075 5730 3.508793 AGGATCAAGCAAGTTCATTGTGG 59.491 43.478 0.00 0.00 41.29 4.17
2076 5731 3.507233 GGATCAAGCAAGTTCATTGTGGA 59.493 43.478 0.00 0.00 41.29 4.02
2077 5732 3.988379 TCAAGCAAGTTCATTGTGGAC 57.012 42.857 0.00 0.00 41.29 4.02
2078 5733 3.286353 TCAAGCAAGTTCATTGTGGACA 58.714 40.909 0.00 0.00 41.29 4.02
2079 5734 3.890756 TCAAGCAAGTTCATTGTGGACAT 59.109 39.130 0.00 0.00 41.29 3.06
2080 5735 4.341806 TCAAGCAAGTTCATTGTGGACATT 59.658 37.500 0.00 0.00 41.29 2.71
2081 5736 4.510038 AGCAAGTTCATTGTGGACATTC 57.490 40.909 0.00 0.00 41.29 2.67
2082 5737 4.147321 AGCAAGTTCATTGTGGACATTCT 58.853 39.130 0.00 0.00 41.29 2.40
2083 5738 4.217118 AGCAAGTTCATTGTGGACATTCTC 59.783 41.667 0.00 0.00 41.29 2.87
2087 5742 2.621338 TCATTGTGGACATTCTCGCTC 58.379 47.619 0.00 0.00 0.00 5.03
2089 5744 2.768253 TTGTGGACATTCTCGCTCAT 57.232 45.000 0.00 0.00 0.00 2.90
2090 5745 2.014335 TGTGGACATTCTCGCTCATG 57.986 50.000 0.00 0.00 0.00 3.07
2091 5746 0.654683 GTGGACATTCTCGCTCATGC 59.345 55.000 0.00 0.00 0.00 4.06
2385 6222 4.933064 GCCTCATCGCCCGAGTCG 62.933 72.222 5.29 5.29 0.00 4.18
2394 6231 2.892640 CCCGAGTCGGCAGATTCA 59.107 61.111 26.60 0.00 46.86 2.57
2480 6317 0.462759 AAATCCGCCTACTCAGCTGC 60.463 55.000 9.47 0.00 0.00 5.25
2498 6335 3.251729 GCTGCATCCAAGGTATGTACATG 59.748 47.826 18.81 2.38 0.00 3.21
2506 6343 4.260743 CCAAGGTATGTACATGCATGTTCG 60.261 45.833 35.45 15.94 41.97 3.95
2544 6389 7.295930 GCATACTTTCTTGTAGCGTTAAAAGT 58.704 34.615 8.82 9.71 39.51 2.66
2555 6400 1.874739 CGTTAAAAGTCCGCCCTGACA 60.875 52.381 0.00 0.00 37.73 3.58
2556 6401 2.223745 GTTAAAAGTCCGCCCTGACAA 58.776 47.619 0.00 0.00 37.73 3.18
2637 6482 4.820173 TGACTCTTCTTCGTGTGTTAGAGA 59.180 41.667 0.00 0.00 34.63 3.10
2676 6521 1.755179 TCTGCAAGAGGCTAATTGGC 58.245 50.000 5.01 5.01 38.67 4.52
2763 6608 2.139917 TCAGGGTCGAAATGAAACACG 58.860 47.619 0.00 0.00 0.00 4.49
2764 6609 1.871039 CAGGGTCGAAATGAAACACGT 59.129 47.619 0.00 0.00 0.00 4.49
2765 6610 3.061322 CAGGGTCGAAATGAAACACGTA 58.939 45.455 0.00 0.00 0.00 3.57
2766 6611 3.062042 AGGGTCGAAATGAAACACGTAC 58.938 45.455 0.00 0.00 0.00 3.67
2884 6738 5.687285 GTGCACCTGATTCAACTGTTTTTAG 59.313 40.000 5.22 0.00 0.00 1.85
2894 6748 4.396790 TCAACTGTTTTTAGTTTGGCGACT 59.603 37.500 0.00 0.00 38.78 4.18
2896 6750 3.692593 ACTGTTTTTAGTTTGGCGACTGT 59.307 39.130 0.00 0.00 0.00 3.55
3014 6868 5.775686 TCAGAGTGATTGAAGGCATTTTTG 58.224 37.500 0.00 0.00 0.00 2.44
3076 6930 8.854614 ATAGCAAGATCAGGTAAATTCCATAC 57.145 34.615 0.00 0.00 0.00 2.39
3077 6931 5.760253 AGCAAGATCAGGTAAATTCCATACG 59.240 40.000 0.00 0.00 0.00 3.06
3082 6936 4.776349 TCAGGTAAATTCCATACGCATGT 58.224 39.130 0.00 0.00 0.00 3.21
3096 6952 6.591448 CCATACGCATGTATCATACACTGATT 59.409 38.462 0.00 0.00 42.07 2.57
3099 6955 6.981722 ACGCATGTATCATACACTGATTAGA 58.018 36.000 0.00 0.00 42.07 2.10
3100 6956 7.433680 ACGCATGTATCATACACTGATTAGAA 58.566 34.615 0.00 0.00 42.07 2.10
3102 6958 7.409767 CGCATGTATCATACACTGATTAGAACG 60.410 40.741 0.00 0.00 42.07 3.95
3131 6987 9.507280 CAATTAGAAGTGTATGCAAAGTATTGG 57.493 33.333 0.00 0.00 37.02 3.16
3147 7003 8.387354 CAAAGTATTGGTGAAACAAAGGAAAAC 58.613 33.333 0.00 0.00 39.98 2.43
3151 7007 5.730296 TGGTGAAACAAAGGAAAACTTGA 57.270 34.783 0.00 0.00 39.96 3.02
3220 7076 1.045407 AGGTGACTTGCTAACACGGA 58.955 50.000 0.00 0.00 37.44 4.69
3235 7091 2.430367 GGAAACGCCACCTCCACT 59.570 61.111 0.00 0.00 36.34 4.00
3236 7092 1.966451 GGAAACGCCACCTCCACTG 60.966 63.158 0.00 0.00 36.34 3.66
3240 7096 0.535102 AACGCCACCTCCACTGAAAG 60.535 55.000 0.00 0.00 42.29 2.62
3249 7105 4.572389 CACCTCCACTGAAAGAATATTCCG 59.428 45.833 11.92 0.00 37.43 4.30
3319 7200 4.855340 ACCATCCAACTCGGTTCATAATT 58.145 39.130 0.00 0.00 35.57 1.40
3435 7317 2.590575 CGGAGGGTGCGTTGTTGT 60.591 61.111 0.00 0.00 0.00 3.32
3465 7347 5.975693 TTTTTCTCTCTCTCTCTCTCACC 57.024 43.478 0.00 0.00 0.00 4.02
3466 7348 4.649267 TTTCTCTCTCTCTCTCTCACCA 57.351 45.455 0.00 0.00 0.00 4.17
3467 7349 3.627395 TCTCTCTCTCTCTCTCACCAC 57.373 52.381 0.00 0.00 0.00 4.16
3468 7350 2.093711 TCTCTCTCTCTCTCTCACCACG 60.094 54.545 0.00 0.00 0.00 4.94
3469 7351 1.626321 TCTCTCTCTCTCTCACCACGT 59.374 52.381 0.00 0.00 0.00 4.49
3472 7354 0.598562 TCTCTCTCTCACCACGTTGC 59.401 55.000 0.00 0.00 0.00 4.17
3473 7355 0.389166 CTCTCTCTCACCACGTTGCC 60.389 60.000 0.00 0.00 0.00 4.52
3474 7356 0.827925 TCTCTCTCACCACGTTGCCT 60.828 55.000 0.00 0.00 0.00 4.75
3475 7357 0.888619 CTCTCTCACCACGTTGCCTA 59.111 55.000 0.00 0.00 0.00 3.93
3476 7358 0.888619 TCTCTCACCACGTTGCCTAG 59.111 55.000 0.00 0.00 0.00 3.02
3477 7359 0.603569 CTCTCACCACGTTGCCTAGT 59.396 55.000 0.00 0.00 0.00 2.57
3478 7360 1.816835 CTCTCACCACGTTGCCTAGTA 59.183 52.381 0.00 0.00 0.00 1.82
3479 7361 1.542915 TCTCACCACGTTGCCTAGTAC 59.457 52.381 0.00 0.00 0.00 2.73
3480 7362 0.241749 TCACCACGTTGCCTAGTACG 59.758 55.000 7.49 7.49 43.08 3.67
3489 7371 4.913376 CGTTGCCTAGTACGTACATTAGT 58.087 43.478 26.55 8.93 33.33 2.24
3490 7372 6.048073 CGTTGCCTAGTACGTACATTAGTA 57.952 41.667 26.55 9.61 33.33 1.82
3491 7373 6.132056 CGTTGCCTAGTACGTACATTAGTAG 58.868 44.000 26.55 17.58 33.33 2.57
3492 7374 6.238211 CGTTGCCTAGTACGTACATTAGTAGT 60.238 42.308 26.55 6.77 33.33 2.73
3493 7375 7.042725 CGTTGCCTAGTACGTACATTAGTAGTA 60.043 40.741 26.55 7.56 33.33 1.82
3494 7376 7.715265 TGCCTAGTACGTACATTAGTAGTAC 57.285 40.000 26.55 13.05 38.71 2.73
3495 7377 7.500992 TGCCTAGTACGTACATTAGTAGTACT 58.499 38.462 26.55 8.14 41.92 2.73
3496 7378 7.987458 TGCCTAGTACGTACATTAGTAGTACTT 59.013 37.037 26.55 4.64 40.89 2.24
3529 7411 0.608130 TGGTGCTACACTGCTACTGG 59.392 55.000 0.00 0.00 34.40 4.00
3567 7449 3.987404 GCACCGTGCCAGAGATTT 58.013 55.556 12.80 0.00 37.42 2.17
3568 7450 1.796796 GCACCGTGCCAGAGATTTC 59.203 57.895 12.80 0.00 37.42 2.17
3583 7466 7.416890 GCCAGAGATTTCTTTCTAGTAGCAGTA 60.417 40.741 0.00 0.00 0.00 2.74
3591 7474 5.358442 TCTTTCTAGTAGCAGTAGCAAGAGG 59.642 44.000 8.11 0.00 45.49 3.69
3594 7477 4.884744 TCTAGTAGCAGTAGCAAGAGGAAG 59.115 45.833 0.00 0.00 45.49 3.46
3598 7481 4.135747 AGCAGTAGCAAGAGGAAGAATC 57.864 45.455 0.00 0.00 45.49 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 7.933577 CCCTTTCTTAGAATTTGCTTCCTTTTT 59.066 33.333 0.00 0.00 34.11 1.94
34 35 7.445121 CCCTTTCTTAGAATTTGCTTCCTTTT 58.555 34.615 0.00 0.00 34.11 2.27
35 36 6.519043 GCCCTTTCTTAGAATTTGCTTCCTTT 60.519 38.462 0.00 0.00 34.11 3.11
36 37 5.047021 GCCCTTTCTTAGAATTTGCTTCCTT 60.047 40.000 0.00 0.00 34.11 3.36
37 38 4.464244 GCCCTTTCTTAGAATTTGCTTCCT 59.536 41.667 0.00 0.00 34.11 3.36
38 39 4.382040 GGCCCTTTCTTAGAATTTGCTTCC 60.382 45.833 0.00 0.00 34.11 3.46
39 40 4.220602 TGGCCCTTTCTTAGAATTTGCTTC 59.779 41.667 0.00 0.00 0.00 3.86
40 41 4.159557 TGGCCCTTTCTTAGAATTTGCTT 58.840 39.130 0.00 0.00 0.00 3.91
41 42 3.778265 TGGCCCTTTCTTAGAATTTGCT 58.222 40.909 0.00 0.00 0.00 3.91
42 43 4.535526 TTGGCCCTTTCTTAGAATTTGC 57.464 40.909 0.00 0.00 0.00 3.68
43 44 8.531146 TCTTATTTGGCCCTTTCTTAGAATTTG 58.469 33.333 0.00 0.00 0.00 2.32
44 45 8.664669 TCTTATTTGGCCCTTTCTTAGAATTT 57.335 30.769 0.00 0.00 0.00 1.82
45 46 8.664669 TTCTTATTTGGCCCTTTCTTAGAATT 57.335 30.769 0.00 0.00 0.00 2.17
46 47 8.664669 TTTCTTATTTGGCCCTTTCTTAGAAT 57.335 30.769 0.00 0.00 0.00 2.40
47 48 8.664669 ATTTCTTATTTGGCCCTTTCTTAGAA 57.335 30.769 0.00 0.00 0.00 2.10
48 49 8.664669 AATTTCTTATTTGGCCCTTTCTTAGA 57.335 30.769 0.00 0.00 0.00 2.10
49 50 8.753133 AGAATTTCTTATTTGGCCCTTTCTTAG 58.247 33.333 0.00 0.00 0.00 2.18
50 51 8.664669 AGAATTTCTTATTTGGCCCTTTCTTA 57.335 30.769 0.00 0.00 0.00 2.10
51 52 7.455953 AGAGAATTTCTTATTTGGCCCTTTCTT 59.544 33.333 0.00 0.00 29.61 2.52
52 53 6.956435 AGAGAATTTCTTATTTGGCCCTTTCT 59.044 34.615 0.00 0.00 29.61 2.52
53 54 7.123397 AGAGAGAATTTCTTATTTGGCCCTTTC 59.877 37.037 0.00 0.00 35.87 2.62
54 55 6.956435 AGAGAGAATTTCTTATTTGGCCCTTT 59.044 34.615 0.00 0.00 35.87 3.11
55 56 6.497640 AGAGAGAATTTCTTATTTGGCCCTT 58.502 36.000 0.00 0.00 35.87 3.95
56 57 6.084749 AGAGAGAATTTCTTATTTGGCCCT 57.915 37.500 0.00 0.00 35.87 5.19
57 58 6.016693 GCTAGAGAGAATTTCTTATTTGGCCC 60.017 42.308 0.00 0.00 35.87 5.80
58 59 6.770303 AGCTAGAGAGAATTTCTTATTTGGCC 59.230 38.462 0.00 0.00 35.87 5.36
59 60 7.800155 AGCTAGAGAGAATTTCTTATTTGGC 57.200 36.000 0.00 2.60 35.87 4.52
66 67 9.746457 AACCAATAAAGCTAGAGAGAATTTCTT 57.254 29.630 0.00 0.00 35.87 2.52
67 68 9.171877 CAACCAATAAAGCTAGAGAGAATTTCT 57.828 33.333 0.00 0.00 39.43 2.52
68 69 8.401709 CCAACCAATAAAGCTAGAGAGAATTTC 58.598 37.037 0.00 0.00 0.00 2.17
69 70 8.109634 TCCAACCAATAAAGCTAGAGAGAATTT 58.890 33.333 0.00 0.00 0.00 1.82
70 71 7.633789 TCCAACCAATAAAGCTAGAGAGAATT 58.366 34.615 0.00 0.00 0.00 2.17
71 72 7.126421 TCTCCAACCAATAAAGCTAGAGAGAAT 59.874 37.037 0.00 0.00 0.00 2.40
72 73 6.440647 TCTCCAACCAATAAAGCTAGAGAGAA 59.559 38.462 0.00 0.00 0.00 2.87
73 74 5.958380 TCTCCAACCAATAAAGCTAGAGAGA 59.042 40.000 0.00 0.00 0.00 3.10
74 75 6.227298 TCTCCAACCAATAAAGCTAGAGAG 57.773 41.667 0.00 0.00 0.00 3.20
75 76 6.814954 ATCTCCAACCAATAAAGCTAGAGA 57.185 37.500 0.00 0.00 32.83 3.10
76 77 6.484977 GGAATCTCCAACCAATAAAGCTAGAG 59.515 42.308 0.00 0.00 36.28 2.43
77 78 6.357367 GGAATCTCCAACCAATAAAGCTAGA 58.643 40.000 0.00 0.00 36.28 2.43
78 79 5.532779 GGGAATCTCCAACCAATAAAGCTAG 59.467 44.000 0.00 0.00 38.64 3.42
79 80 5.044476 TGGGAATCTCCAACCAATAAAGCTA 60.044 40.000 0.00 0.00 38.64 3.32
80 81 4.264352 TGGGAATCTCCAACCAATAAAGCT 60.264 41.667 0.00 0.00 38.64 3.74
81 82 4.023291 TGGGAATCTCCAACCAATAAAGC 58.977 43.478 0.00 0.00 38.64 3.51
82 83 5.452356 GCATGGGAATCTCCAACCAATAAAG 60.452 44.000 0.00 0.00 40.62 1.85
83 84 4.405358 GCATGGGAATCTCCAACCAATAAA 59.595 41.667 0.00 0.00 40.62 1.40
84 85 3.960102 GCATGGGAATCTCCAACCAATAA 59.040 43.478 0.00 0.00 40.62 1.40
85 86 3.053019 TGCATGGGAATCTCCAACCAATA 60.053 43.478 0.00 0.00 40.62 1.90
86 87 2.292389 TGCATGGGAATCTCCAACCAAT 60.292 45.455 0.00 0.00 40.62 3.16
87 88 1.076841 TGCATGGGAATCTCCAACCAA 59.923 47.619 0.00 0.00 40.62 3.67
88 89 0.703488 TGCATGGGAATCTCCAACCA 59.297 50.000 0.00 0.00 40.62 3.67
89 90 1.684983 CATGCATGGGAATCTCCAACC 59.315 52.381 19.40 0.00 40.62 3.77
114 115 8.655970 GCCCACAAAAATAATCAATGTCTAAAC 58.344 33.333 0.00 0.00 0.00 2.01
116 117 7.327214 GGCCCACAAAAATAATCAATGTCTAA 58.673 34.615 0.00 0.00 0.00 2.10
117 118 6.127196 GGGCCCACAAAAATAATCAATGTCTA 60.127 38.462 19.95 0.00 0.00 2.59
118 119 5.338300 GGGCCCACAAAAATAATCAATGTCT 60.338 40.000 19.95 0.00 0.00 3.41
143 144 5.300034 TCATCTCTGTCAAAAGTTGCATGTT 59.700 36.000 0.00 0.00 0.00 2.71
158 159 3.034635 GGGTGGAGTATGTCATCTCTGT 58.965 50.000 10.29 0.00 0.00 3.41
171 172 0.332632 CATGGTTGGATGGGTGGAGT 59.667 55.000 0.00 0.00 0.00 3.85
257 262 4.679197 GCAACGAACAAGAATATGCAAACA 59.321 37.500 0.00 0.00 32.80 2.83
258 263 4.201391 CGCAACGAACAAGAATATGCAAAC 60.201 41.667 0.00 0.00 32.80 2.93
372 2365 7.168469 CCCTAAAACAAACGAAACATGGTAAAG 59.832 37.037 0.00 0.00 0.00 1.85
380 2373 7.121020 ACTCTAAACCCTAAAACAAACGAAACA 59.879 33.333 0.00 0.00 0.00 2.83
423 2431 5.512232 CCCCAATCATAAGCTCTAAGTCCTC 60.512 48.000 0.00 0.00 0.00 3.71
433 2441 2.447047 CCCTAACCCCCAATCATAAGCT 59.553 50.000 0.00 0.00 0.00 3.74
543 2583 5.470098 AGCACTAGTGAATTCGTTTTGACAT 59.530 36.000 27.08 0.00 0.00 3.06
554 2594 8.239998 GCTTTCAAATAAGAGCACTAGTGAATT 58.760 33.333 27.08 17.66 35.29 2.17
561 2601 5.179452 AGGGCTTTCAAATAAGAGCACTA 57.821 39.130 0.00 0.00 46.37 2.74
695 4067 6.513066 GCATGAAGCTTTTGATAGAGATGACC 60.513 42.308 12.94 0.00 41.15 4.02
806 4178 3.052620 CTCGTCTCCGTCCGCACAT 62.053 63.158 0.00 0.00 35.01 3.21
843 4215 0.827368 GAAGCTAGTGGAGGTGGAGG 59.173 60.000 0.00 0.00 35.56 4.30
908 4280 2.724690 CGTATATGTAGTGCGTCTTGGC 59.275 50.000 0.00 0.00 0.00 4.52
939 4311 0.040646 TCTCCTAGGTTCTGGCGGAA 59.959 55.000 9.08 4.22 0.00 4.30
950 4322 0.533308 CGTCGTCTCCCTCTCCTAGG 60.533 65.000 0.82 0.82 46.09 3.02
1009 4381 2.361610 CAGGGGAAGCGCCATGTT 60.362 61.111 2.29 0.00 39.05 2.71
1179 4551 4.794439 TCGTCGATGGTGCTGCCG 62.794 66.667 4.48 0.00 41.21 5.69
1527 4899 1.155087 CGCGTCGTTCTTGAACACG 60.155 57.895 21.78 21.78 37.77 4.49
1839 5211 4.014406 TCATGATGCTGCAGTTCTTGAAT 58.986 39.130 23.02 8.33 0.00 2.57
1853 5225 2.630317 CGCCTTCGCTCATGATGC 59.370 61.111 0.00 1.25 0.00 3.91
1914 5566 0.736636 CGGTGTAGGCGTAGATGACA 59.263 55.000 0.00 0.00 0.00 3.58
2033 5687 6.778542 TCCTCCATCCATCCATAATGTAAA 57.221 37.500 0.00 0.00 33.13 2.01
2034 5688 6.504989 TGATCCTCCATCCATCCATAATGTAA 59.495 38.462 0.00 0.00 33.13 2.41
2035 5689 6.031386 TGATCCTCCATCCATCCATAATGTA 58.969 40.000 0.00 0.00 33.13 2.29
2036 5690 4.853856 TGATCCTCCATCCATCCATAATGT 59.146 41.667 0.00 0.00 33.13 2.71
2050 5705 3.726557 ATGAACTTGCTTGATCCTCCA 57.273 42.857 0.00 0.00 0.00 3.86
2052 5707 4.380233 CCACAATGAACTTGCTTGATCCTC 60.380 45.833 0.00 0.00 38.50 3.71
2053 5708 3.508793 CCACAATGAACTTGCTTGATCCT 59.491 43.478 0.00 0.00 38.50 3.24
2055 5710 4.022935 TGTCCACAATGAACTTGCTTGATC 60.023 41.667 0.00 0.00 38.50 2.92
2056 5711 3.890756 TGTCCACAATGAACTTGCTTGAT 59.109 39.130 0.00 0.00 38.50 2.57
2058 5713 3.713858 TGTCCACAATGAACTTGCTTG 57.286 42.857 0.00 0.00 38.50 4.01
2060 5715 4.147321 AGAATGTCCACAATGAACTTGCT 58.853 39.130 0.00 0.00 38.50 3.91
2061 5716 4.479619 GAGAATGTCCACAATGAACTTGC 58.520 43.478 0.00 0.00 38.50 4.01
2062 5717 4.715896 CGAGAATGTCCACAATGAACTTG 58.284 43.478 0.00 0.00 40.90 3.16
2064 5719 2.744202 GCGAGAATGTCCACAATGAACT 59.256 45.455 0.00 0.00 0.00 3.01
2066 5721 3.002791 GAGCGAGAATGTCCACAATGAA 58.997 45.455 0.00 0.00 0.00 2.57
2067 5722 2.028203 TGAGCGAGAATGTCCACAATGA 60.028 45.455 0.00 0.00 0.00 2.57
2068 5723 2.349590 TGAGCGAGAATGTCCACAATG 58.650 47.619 0.00 0.00 0.00 2.82
2069 5724 2.768253 TGAGCGAGAATGTCCACAAT 57.232 45.000 0.00 0.00 0.00 2.71
2070 5725 2.349590 CATGAGCGAGAATGTCCACAA 58.650 47.619 0.00 0.00 0.00 3.33
2072 5727 0.654683 GCATGAGCGAGAATGTCCAC 59.345 55.000 0.00 0.00 0.00 4.02
2073 5728 0.249955 TGCATGAGCGAGAATGTCCA 59.750 50.000 0.00 0.00 46.23 4.02
2074 5729 1.263484 CATGCATGAGCGAGAATGTCC 59.737 52.381 22.59 0.00 46.23 4.02
2075 5730 1.938577 ACATGCATGAGCGAGAATGTC 59.061 47.619 32.75 0.00 46.23 3.06
2076 5731 2.034104 ACATGCATGAGCGAGAATGT 57.966 45.000 32.75 4.95 46.23 2.71
2077 5732 2.612672 AGAACATGCATGAGCGAGAATG 59.387 45.455 32.75 4.22 46.23 2.67
2078 5733 2.915349 AGAACATGCATGAGCGAGAAT 58.085 42.857 32.75 4.93 46.23 2.40
2079 5734 2.391616 AGAACATGCATGAGCGAGAA 57.608 45.000 32.75 0.00 46.23 2.87
2080 5735 2.391616 AAGAACATGCATGAGCGAGA 57.608 45.000 32.75 0.00 46.23 4.04
2081 5736 4.808077 ATAAAGAACATGCATGAGCGAG 57.192 40.909 32.75 5.75 46.23 5.03
2082 5737 6.238456 CCTTAATAAAGAACATGCATGAGCGA 60.238 38.462 32.75 12.60 38.12 4.93
2083 5738 5.911280 CCTTAATAAAGAACATGCATGAGCG 59.089 40.000 32.75 6.97 38.12 5.03
2087 5742 7.373493 GGATCCCTTAATAAAGAACATGCATG 58.627 38.462 25.09 25.09 34.37 4.06
2089 5744 5.833131 GGGATCCCTTAATAAAGAACATGCA 59.167 40.000 24.69 0.00 34.37 3.96
2090 5745 5.833131 TGGGATCCCTTAATAAAGAACATGC 59.167 40.000 31.05 0.00 34.37 4.06
2091 5746 7.725397 TGATGGGATCCCTTAATAAAGAACATG 59.275 37.037 31.05 0.00 34.37 3.21
2385 6222 1.505477 GCGATGAGGCTGAATCTGCC 61.505 60.000 21.49 21.49 46.61 4.85
2394 6231 3.532155 GACTCGGGCGATGAGGCT 61.532 66.667 0.00 0.00 45.89 4.58
2446 6283 2.852495 GATTTGGGCGACGAGGCTGA 62.852 60.000 0.00 0.00 45.89 4.26
2447 6284 2.436646 ATTTGGGCGACGAGGCTG 60.437 61.111 0.00 0.00 45.89 4.85
2480 6317 4.823442 ACATGCATGTACATACCTTGGATG 59.177 41.667 30.50 20.03 40.07 3.51
2498 6335 1.883084 CGGGGTAGCTCGAACATGC 60.883 63.158 8.95 0.00 0.00 4.06
2506 6343 3.612681 TATGCCGCGGGGTAGCTC 61.613 66.667 29.38 8.68 34.97 4.09
2544 6389 2.280524 CAACGTTGTCAGGGCGGA 60.281 61.111 20.21 0.00 0.00 5.54
2555 6400 5.864474 TGCAAATTAAATAATCCGCAACGTT 59.136 32.000 0.00 0.00 32.95 3.99
2556 6401 5.403246 TGCAAATTAAATAATCCGCAACGT 58.597 33.333 6.87 0.00 32.95 3.99
2615 6460 5.148568 GTCTCTAACACACGAAGAAGAGTC 58.851 45.833 0.00 0.00 33.72 3.36
2637 6482 0.593128 GCAAGATGGTGAAGCGTTGT 59.407 50.000 0.00 0.00 0.00 3.32
2680 6525 1.270893 GGTCCTAAAGCCCGATGGATC 60.271 57.143 0.00 0.00 0.00 3.36
2681 6526 0.765510 GGTCCTAAAGCCCGATGGAT 59.234 55.000 0.00 0.00 0.00 3.41
2682 6527 0.619255 TGGTCCTAAAGCCCGATGGA 60.619 55.000 0.00 0.00 0.00 3.41
2683 6528 0.179045 CTGGTCCTAAAGCCCGATGG 60.179 60.000 0.00 0.00 0.00 3.51
2684 6529 0.830648 TCTGGTCCTAAAGCCCGATG 59.169 55.000 0.00 0.00 0.00 3.84
2884 6738 1.400242 GCAGAATCACAGTCGCCAAAC 60.400 52.381 0.00 0.00 0.00 2.93
2894 6748 9.706529 ACTATATCTCTATATGGCAGAATCACA 57.293 33.333 0.00 0.00 31.46 3.58
3054 6908 5.560953 GCGTATGGAATTTACCTGATCTTGC 60.561 44.000 0.00 0.00 0.00 4.01
3096 6952 8.194769 TGCATACACTTCTAATTGATCGTTCTA 58.805 33.333 0.00 0.00 0.00 2.10
3099 6955 7.609760 TTGCATACACTTCTAATTGATCGTT 57.390 32.000 0.00 0.00 0.00 3.85
3100 6956 7.334421 ACTTTGCATACACTTCTAATTGATCGT 59.666 33.333 0.00 0.00 0.00 3.73
3119 6975 5.127845 TCCTTTGTTTCACCAATACTTTGCA 59.872 36.000 0.00 0.00 0.00 4.08
3130 6986 5.720202 ACTCAAGTTTTCCTTTGTTTCACC 58.280 37.500 0.00 0.00 0.00 4.02
3131 6987 6.386654 TGACTCAAGTTTTCCTTTGTTTCAC 58.613 36.000 0.00 0.00 0.00 3.18
3177 7033 6.162777 TGTGATGACTTCGTCAATCATTGTA 58.837 36.000 2.65 0.00 45.96 2.41
3179 7035 5.446875 CCTGTGATGACTTCGTCAATCATTG 60.447 44.000 2.65 0.00 45.96 2.82
3180 7036 4.633126 CCTGTGATGACTTCGTCAATCATT 59.367 41.667 2.65 0.00 45.96 2.57
3181 7037 4.186926 CCTGTGATGACTTCGTCAATCAT 58.813 43.478 2.65 0.00 45.96 2.45
3220 7076 0.106918 TTTCAGTGGAGGTGGCGTTT 60.107 50.000 0.00 0.00 0.00 3.60
3224 7080 2.206576 ATTCTTTCAGTGGAGGTGGC 57.793 50.000 0.00 0.00 0.00 5.01
3233 7089 9.319143 CTCATTAAGACGGAATATTCTTTCAGT 57.681 33.333 14.95 7.80 36.85 3.41
3234 7090 9.534565 TCTCATTAAGACGGAATATTCTTTCAG 57.465 33.333 14.95 5.03 33.96 3.02
3235 7091 9.314321 GTCTCATTAAGACGGAATATTCTTTCA 57.686 33.333 14.95 0.00 44.79 2.69
3262 7118 6.399639 AAACTTCGGGTTTGACATATGTTT 57.600 33.333 10.30 0.00 45.29 2.83
3277 7133 5.345702 TGGTTATACTCGATCAAACTTCGG 58.654 41.667 0.00 0.00 37.22 4.30
3278 7134 6.144080 GGATGGTTATACTCGATCAAACTTCG 59.856 42.308 0.00 0.00 37.94 3.79
3395 7277 5.277297 CGACAGTTCACATTCAAGTGCTTTA 60.277 40.000 0.00 0.00 39.35 1.85
3398 7280 2.545526 CGACAGTTCACATTCAAGTGCT 59.454 45.455 0.00 0.00 39.35 4.40
3448 7330 2.279741 CGTGGTGAGAGAGAGAGAGAG 58.720 57.143 0.00 0.00 0.00 3.20
3449 7331 1.626321 ACGTGGTGAGAGAGAGAGAGA 59.374 52.381 0.00 0.00 0.00 3.10
3450 7332 2.107950 ACGTGGTGAGAGAGAGAGAG 57.892 55.000 0.00 0.00 0.00 3.20
3451 7333 2.155279 CAACGTGGTGAGAGAGAGAGA 58.845 52.381 0.00 0.00 0.00 3.10
3452 7334 1.402194 GCAACGTGGTGAGAGAGAGAG 60.402 57.143 0.00 0.00 0.00 3.20
3453 7335 0.598562 GCAACGTGGTGAGAGAGAGA 59.401 55.000 0.00 0.00 0.00 3.10
3454 7336 0.389166 GGCAACGTGGTGAGAGAGAG 60.389 60.000 0.00 0.00 0.00 3.20
3455 7337 0.827925 AGGCAACGTGGTGAGAGAGA 60.828 55.000 0.00 0.00 46.39 3.10
3456 7338 0.888619 TAGGCAACGTGGTGAGAGAG 59.111 55.000 0.00 0.00 46.39 3.20
3457 7339 0.888619 CTAGGCAACGTGGTGAGAGA 59.111 55.000 0.00 0.00 46.39 3.10
3458 7340 0.603569 ACTAGGCAACGTGGTGAGAG 59.396 55.000 0.00 0.00 46.39 3.20
3459 7341 1.542915 GTACTAGGCAACGTGGTGAGA 59.457 52.381 0.00 0.00 46.39 3.27
3462 7344 2.733127 CGTACTAGGCAACGTGGTG 58.267 57.895 0.00 0.00 46.39 4.17
3467 7349 4.913376 ACTAATGTACGTACTAGGCAACG 58.087 43.478 25.12 11.52 44.47 4.10
3468 7350 7.020914 ACTACTAATGTACGTACTAGGCAAC 57.979 40.000 25.12 0.31 0.00 4.17
3469 7351 7.987458 AGTACTACTAATGTACGTACTAGGCAA 59.013 37.037 25.12 5.47 43.41 4.52
3496 7378 5.048083 GTGTAGCACCATTCATCTGGAAAAA 60.048 40.000 0.00 0.00 39.39 1.94
3529 7411 0.459237 CGTGAGAGAGTGATGCCCAC 60.459 60.000 0.00 0.00 46.03 4.61
3554 7436 4.499183 ACTAGAAAGAAATCTCTGGCACG 58.501 43.478 0.00 0.00 30.03 5.34
3556 7438 5.187772 TGCTACTAGAAAGAAATCTCTGGCA 59.812 40.000 0.00 0.00 30.03 4.92
3557 7439 5.665459 TGCTACTAGAAAGAAATCTCTGGC 58.335 41.667 0.00 0.00 30.03 4.85
3558 7440 6.872920 ACTGCTACTAGAAAGAAATCTCTGG 58.127 40.000 0.00 0.00 30.03 3.86
3560 7442 7.340743 TGCTACTGCTACTAGAAAGAAATCTCT 59.659 37.037 0.00 0.00 40.48 3.10
3561 7443 7.484975 TGCTACTGCTACTAGAAAGAAATCTC 58.515 38.462 0.00 0.00 40.48 2.75
3562 7444 7.411486 TGCTACTGCTACTAGAAAGAAATCT 57.589 36.000 0.00 0.00 40.48 2.40
3564 7446 7.841956 TCTTGCTACTGCTACTAGAAAGAAAT 58.158 34.615 0.00 0.00 34.25 2.17
3565 7447 7.228314 TCTTGCTACTGCTACTAGAAAGAAA 57.772 36.000 0.00 0.00 34.25 2.52
3566 7448 6.127591 CCTCTTGCTACTGCTACTAGAAAGAA 60.128 42.308 0.00 0.00 36.04 2.52
3567 7449 5.358442 CCTCTTGCTACTGCTACTAGAAAGA 59.642 44.000 0.00 6.29 34.63 2.52
3568 7450 5.358442 TCCTCTTGCTACTGCTACTAGAAAG 59.642 44.000 0.00 0.00 40.48 2.62


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.