Multiple sequence alignment - TraesCS4A01G170600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G170600 chr4A 100.000 2993 0 0 1 2993 430182073 430179081 0.000000e+00 5528.0
1 TraesCS4A01G170600 chr4B 97.262 1863 45 3 356 2217 165298865 165297008 0.000000e+00 3153.0
2 TraesCS4A01G170600 chr4B 91.506 259 9 2 2209 2464 165291385 165291137 7.940000e-91 344.0
3 TraesCS4A01G170600 chr4B 91.710 193 16 0 2465 2657 165291090 165290898 4.920000e-68 268.0
4 TraesCS4A01G170600 chr4B 100.000 31 0 0 327 357 165298964 165298934 1.160000e-04 58.4
5 TraesCS4A01G170600 chr4D 97.864 1779 36 2 356 2132 132202586 132204364 0.000000e+00 3073.0
6 TraesCS4A01G170600 chr4D 94.606 482 20 3 2177 2654 132204363 132204842 0.000000e+00 741.0
7 TraesCS4A01G170600 chr4D 91.824 159 13 0 198 356 132201474 132201632 3.880000e-54 222.0
8 TraesCS4A01G170600 chr1D 88.644 317 34 2 2678 2993 326225994 326226309 4.680000e-103 385.0
9 TraesCS4A01G170600 chr1D 84.762 315 48 0 2679 2993 126197415 126197729 1.730000e-82 316.0
10 TraesCS4A01G170600 chr1D 85.714 294 34 7 2676 2965 298131220 298131509 1.350000e-78 303.0
11 TraesCS4A01G170600 chr1D 81.416 113 16 2 46 154 489329395 489329506 1.480000e-13 87.9
12 TraesCS4A01G170600 chr1D 80.531 113 17 2 46 154 489304007 489304118 6.880000e-12 82.4
13 TraesCS4A01G170600 chr2B 85.535 318 44 2 2675 2992 429149474 429149789 6.180000e-87 331.0
14 TraesCS4A01G170600 chr3D 84.953 319 46 2 2676 2993 102207966 102207649 3.720000e-84 322.0
15 TraesCS4A01G170600 chr3D 82.422 256 39 5 2694 2945 518320213 518319960 5.020000e-53 219.0
16 TraesCS4A01G170600 chr5D 84.942 259 36 3 2678 2934 281216445 281216702 2.960000e-65 259.0
17 TraesCS4A01G170600 chr1B 87.793 213 22 1 46 254 671542703 671542915 2.300000e-61 246.0
18 TraesCS4A01G170600 chr1B 90.000 180 16 2 2332 2511 421671608 421671431 6.450000e-57 231.0
19 TraesCS4A01G170600 chr7D 84.746 236 34 2 2675 2909 414430722 414430956 4.990000e-58 235.0
20 TraesCS4A01G170600 chr5B 80.132 302 51 7 2697 2993 247673728 247673431 1.810000e-52 217.0
21 TraesCS4A01G170600 chrUn 81.416 113 16 2 46 154 346648782 346648671 1.480000e-13 87.9
22 TraesCS4A01G170600 chr2A 100.000 28 0 0 2675 2702 758260792 758260819 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G170600 chr4A 430179081 430182073 2992 True 5528.000000 5528 100.000000 1 2993 1 chr4A.!!$R1 2992
1 TraesCS4A01G170600 chr4B 165297008 165298964 1956 True 1605.700000 3153 98.631000 327 2217 2 chr4B.!!$R2 1890
2 TraesCS4A01G170600 chr4D 132201474 132204842 3368 False 1345.333333 3073 94.764667 198 2654 3 chr4D.!!$F1 2456

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
820 1824 0.178947 CCTCCTATCCTCCCTTCGCT 60.179 60.0 0.0 0.0 0.0 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2736 3790 0.031449 CGTTGGGCCATCGTTTTTGT 59.969 50.0 25.1 0.0 0.0 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.455056 AGAACTATACCCTACTTGATGCG 57.545 43.478 0.00 0.00 0.00 4.73
23 24 4.281182 AGAACTATACCCTACTTGATGCGG 59.719 45.833 0.00 0.00 0.00 5.69
24 25 2.897969 ACTATACCCTACTTGATGCGGG 59.102 50.000 0.00 0.00 42.53 6.13
25 26 4.147135 ACCCTACTTGATGCGGGT 57.853 55.556 0.00 0.00 44.90 5.28
26 27 1.117150 TACCCTACTTGATGCGGGTC 58.883 55.000 1.49 0.00 46.78 4.46
27 28 1.146263 CCCTACTTGATGCGGGTCC 59.854 63.158 0.00 0.00 31.89 4.46
28 29 1.622607 CCCTACTTGATGCGGGTCCA 61.623 60.000 0.00 0.00 31.89 4.02
29 30 0.462047 CCTACTTGATGCGGGTCCAC 60.462 60.000 0.00 0.00 0.00 4.02
30 31 0.249120 CTACTTGATGCGGGTCCACA 59.751 55.000 0.00 0.00 0.00 4.17
31 32 0.687920 TACTTGATGCGGGTCCACAA 59.312 50.000 0.00 0.00 0.00 3.33
32 33 0.889186 ACTTGATGCGGGTCCACAAC 60.889 55.000 0.00 0.00 0.00 3.32
41 42 2.715536 GGTCCACAACCTCACAACC 58.284 57.895 0.00 0.00 45.45 3.77
42 43 0.182775 GGTCCACAACCTCACAACCT 59.817 55.000 0.00 0.00 45.45 3.50
43 44 1.409661 GGTCCACAACCTCACAACCTT 60.410 52.381 0.00 0.00 45.45 3.50
44 45 1.947456 GTCCACAACCTCACAACCTTC 59.053 52.381 0.00 0.00 0.00 3.46
45 46 1.133915 TCCACAACCTCACAACCTTCC 60.134 52.381 0.00 0.00 0.00 3.46
46 47 1.409521 CCACAACCTCACAACCTTCCA 60.410 52.381 0.00 0.00 0.00 3.53
47 48 1.676006 CACAACCTCACAACCTTCCAC 59.324 52.381 0.00 0.00 0.00 4.02
48 49 0.944386 CAACCTCACAACCTTCCACG 59.056 55.000 0.00 0.00 0.00 4.94
49 50 0.818040 AACCTCACAACCTTCCACGC 60.818 55.000 0.00 0.00 0.00 5.34
50 51 2.317609 CCTCACAACCTTCCACGCG 61.318 63.158 3.53 3.53 0.00 6.01
51 52 1.300620 CTCACAACCTTCCACGCGA 60.301 57.895 15.93 0.00 0.00 5.87
52 53 0.670546 CTCACAACCTTCCACGCGAT 60.671 55.000 15.93 0.00 0.00 4.58
53 54 0.604073 TCACAACCTTCCACGCGATA 59.396 50.000 15.93 0.00 0.00 2.92
54 55 1.206132 TCACAACCTTCCACGCGATAT 59.794 47.619 15.93 0.00 0.00 1.63
55 56 1.327460 CACAACCTTCCACGCGATATG 59.673 52.381 15.93 0.00 0.00 1.78
56 57 1.206132 ACAACCTTCCACGCGATATGA 59.794 47.619 15.93 0.00 0.00 2.15
57 58 2.158957 ACAACCTTCCACGCGATATGAT 60.159 45.455 15.93 0.00 0.00 2.45
58 59 3.069016 ACAACCTTCCACGCGATATGATA 59.931 43.478 15.93 0.00 0.00 2.15
59 60 3.577649 ACCTTCCACGCGATATGATAG 57.422 47.619 15.93 1.42 0.00 2.08
60 61 2.263077 CCTTCCACGCGATATGATAGC 58.737 52.381 15.93 0.00 0.00 2.97
61 62 2.352715 CCTTCCACGCGATATGATAGCA 60.353 50.000 15.93 0.00 0.00 3.49
62 63 3.317150 CTTCCACGCGATATGATAGCAA 58.683 45.455 15.93 0.00 0.00 3.91
63 64 3.592898 TCCACGCGATATGATAGCAAT 57.407 42.857 15.93 0.00 0.00 3.56
64 65 3.511699 TCCACGCGATATGATAGCAATC 58.488 45.455 15.93 0.00 0.00 2.67
65 66 2.279921 CCACGCGATATGATAGCAATCG 59.720 50.000 15.93 16.12 44.04 3.34
66 67 2.917343 CACGCGATATGATAGCAATCGT 59.083 45.455 15.93 8.26 43.33 3.73
67 68 3.001660 CACGCGATATGATAGCAATCGTC 60.002 47.826 15.93 13.54 43.33 4.20
68 69 3.171277 CGCGATATGATAGCAATCGTCA 58.829 45.455 19.27 0.00 43.33 4.35
69 70 3.608073 CGCGATATGATAGCAATCGTCAA 59.392 43.478 19.27 0.00 43.33 3.18
70 71 4.089923 CGCGATATGATAGCAATCGTCAAA 59.910 41.667 19.27 0.00 43.33 2.69
71 72 5.545527 GCGATATGATAGCAATCGTCAAAG 58.454 41.667 19.27 1.12 43.33 2.77
72 73 5.346011 GCGATATGATAGCAATCGTCAAAGA 59.654 40.000 19.27 0.00 43.33 2.52
73 74 6.035435 GCGATATGATAGCAATCGTCAAAGAT 59.965 38.462 19.27 0.00 43.33 2.40
74 75 7.412346 GCGATATGATAGCAATCGTCAAAGATT 60.412 37.037 19.27 0.00 43.33 2.40
82 83 1.808411 TCGTCAAAGATTGCAGTCCC 58.192 50.000 5.47 0.00 0.00 4.46
83 84 1.347707 TCGTCAAAGATTGCAGTCCCT 59.652 47.619 5.47 0.00 0.00 4.20
84 85 2.565391 TCGTCAAAGATTGCAGTCCCTA 59.435 45.455 5.47 0.00 0.00 3.53
85 86 2.932614 CGTCAAAGATTGCAGTCCCTAG 59.067 50.000 5.47 0.00 0.00 3.02
86 87 3.368427 CGTCAAAGATTGCAGTCCCTAGA 60.368 47.826 5.47 0.00 0.00 2.43
87 88 3.935828 GTCAAAGATTGCAGTCCCTAGAC 59.064 47.826 5.47 5.88 43.89 2.59
88 89 3.055094 TCAAAGATTGCAGTCCCTAGACC 60.055 47.826 5.47 0.00 44.72 3.85
89 90 2.559381 AGATTGCAGTCCCTAGACCT 57.441 50.000 5.47 0.00 44.72 3.85
90 91 3.689872 AGATTGCAGTCCCTAGACCTA 57.310 47.619 5.47 0.00 44.72 3.08
91 92 3.301274 AGATTGCAGTCCCTAGACCTAC 58.699 50.000 5.47 0.00 44.72 3.18
92 93 2.615986 TTGCAGTCCCTAGACCTACA 57.384 50.000 0.00 0.00 44.72 2.74
93 94 2.615986 TGCAGTCCCTAGACCTACAA 57.384 50.000 0.00 0.00 44.72 2.41
94 95 2.897350 TGCAGTCCCTAGACCTACAAA 58.103 47.619 0.00 0.00 44.72 2.83
95 96 3.450904 TGCAGTCCCTAGACCTACAAAT 58.549 45.455 0.00 0.00 44.72 2.32
96 97 3.844211 TGCAGTCCCTAGACCTACAAATT 59.156 43.478 0.00 0.00 44.72 1.82
97 98 4.192317 GCAGTCCCTAGACCTACAAATTG 58.808 47.826 0.00 0.00 44.72 2.32
98 99 4.323562 GCAGTCCCTAGACCTACAAATTGT 60.324 45.833 3.43 3.43 44.72 2.71
99 100 5.803470 GCAGTCCCTAGACCTACAAATTGTT 60.803 44.000 3.17 0.00 44.72 2.83
100 101 5.875359 CAGTCCCTAGACCTACAAATTGTTC 59.125 44.000 3.17 0.00 44.72 3.18
101 102 5.785940 AGTCCCTAGACCTACAAATTGTTCT 59.214 40.000 3.17 3.98 44.72 3.01
102 103 6.070710 AGTCCCTAGACCTACAAATTGTTCTC 60.071 42.308 3.17 0.00 44.72 2.87
103 104 5.189145 TCCCTAGACCTACAAATTGTTCTCC 59.811 44.000 3.17 0.00 0.00 3.71
104 105 5.189934 CCCTAGACCTACAAATTGTTCTCCT 59.810 44.000 3.17 0.45 0.00 3.69
105 106 6.296489 CCCTAGACCTACAAATTGTTCTCCTT 60.296 42.308 3.17 0.00 0.00 3.36
106 107 6.819146 CCTAGACCTACAAATTGTTCTCCTTC 59.181 42.308 3.17 0.00 0.00 3.46
107 108 6.187727 AGACCTACAAATTGTTCTCCTTCA 57.812 37.500 3.17 0.00 0.00 3.02
108 109 6.784031 AGACCTACAAATTGTTCTCCTTCAT 58.216 36.000 3.17 0.00 0.00 2.57
109 110 7.234355 AGACCTACAAATTGTTCTCCTTCATT 58.766 34.615 3.17 0.00 0.00 2.57
110 111 7.391833 AGACCTACAAATTGTTCTCCTTCATTC 59.608 37.037 3.17 0.00 0.00 2.67
111 112 7.004086 ACCTACAAATTGTTCTCCTTCATTCA 58.996 34.615 3.17 0.00 0.00 2.57
112 113 7.671398 ACCTACAAATTGTTCTCCTTCATTCAT 59.329 33.333 3.17 0.00 0.00 2.57
113 114 8.186821 CCTACAAATTGTTCTCCTTCATTCATC 58.813 37.037 3.17 0.00 0.00 2.92
114 115 6.615088 ACAAATTGTTCTCCTTCATTCATCG 58.385 36.000 0.00 0.00 0.00 3.84
115 116 6.207417 ACAAATTGTTCTCCTTCATTCATCGT 59.793 34.615 0.00 0.00 0.00 3.73
116 117 7.390440 ACAAATTGTTCTCCTTCATTCATCGTA 59.610 33.333 0.00 0.00 0.00 3.43
117 118 6.910536 ATTGTTCTCCTTCATTCATCGTAC 57.089 37.500 0.00 0.00 0.00 3.67
118 119 5.661056 TGTTCTCCTTCATTCATCGTACT 57.339 39.130 0.00 0.00 0.00 2.73
119 120 5.410924 TGTTCTCCTTCATTCATCGTACTG 58.589 41.667 0.00 0.00 0.00 2.74
120 121 5.185056 TGTTCTCCTTCATTCATCGTACTGA 59.815 40.000 0.00 0.00 0.00 3.41
121 122 6.127338 TGTTCTCCTTCATTCATCGTACTGAT 60.127 38.462 0.00 0.00 38.01 2.90
155 156 7.834068 TCTGAATTGACAGTAATCTAGTTGC 57.166 36.000 0.00 0.00 38.79 4.17
156 157 7.386059 TCTGAATTGACAGTAATCTAGTTGCA 58.614 34.615 0.00 0.00 38.79 4.08
157 158 7.877612 TCTGAATTGACAGTAATCTAGTTGCAA 59.122 33.333 0.00 0.00 38.79 4.08
158 159 7.806690 TGAATTGACAGTAATCTAGTTGCAAC 58.193 34.615 22.17 22.17 0.00 4.17
159 160 6.743575 ATTGACAGTAATCTAGTTGCAACC 57.256 37.500 25.62 8.72 0.00 3.77
160 161 4.242475 TGACAGTAATCTAGTTGCAACCG 58.758 43.478 25.62 16.90 0.00 4.44
161 162 4.021807 TGACAGTAATCTAGTTGCAACCGA 60.022 41.667 25.62 21.36 0.00 4.69
162 163 5.086104 ACAGTAATCTAGTTGCAACCGAT 57.914 39.130 25.62 22.52 0.00 4.18
163 164 5.488341 ACAGTAATCTAGTTGCAACCGATT 58.512 37.500 30.83 30.83 35.29 3.34
164 165 5.351465 ACAGTAATCTAGTTGCAACCGATTG 59.649 40.000 33.18 25.90 38.99 2.67
165 166 5.351465 CAGTAATCTAGTTGCAACCGATTGT 59.649 40.000 33.18 24.38 38.17 2.71
166 167 5.938125 AGTAATCTAGTTGCAACCGATTGTT 59.062 36.000 33.18 24.47 38.17 2.83
167 168 5.705609 AATCTAGTTGCAACCGATTGTTT 57.294 34.783 29.21 15.71 38.17 2.83
168 169 4.481930 TCTAGTTGCAACCGATTGTTTG 57.518 40.909 25.62 6.88 38.17 2.93
169 170 3.880490 TCTAGTTGCAACCGATTGTTTGT 59.120 39.130 25.62 5.94 38.17 2.83
170 171 2.808244 AGTTGCAACCGATTGTTTGTG 58.192 42.857 25.62 0.00 38.17 3.33
171 172 1.257675 GTTGCAACCGATTGTTTGTGC 59.742 47.619 19.15 0.00 38.17 4.57
172 173 0.743688 TGCAACCGATTGTTTGTGCT 59.256 45.000 0.00 0.00 38.17 4.40
173 174 1.950216 TGCAACCGATTGTTTGTGCTA 59.050 42.857 0.00 0.00 38.17 3.49
174 175 2.031245 TGCAACCGATTGTTTGTGCTAG 60.031 45.455 0.00 0.00 38.17 3.42
175 176 2.668279 GCAACCGATTGTTTGTGCTAGG 60.668 50.000 0.00 0.00 38.17 3.02
176 177 1.165270 ACCGATTGTTTGTGCTAGGC 58.835 50.000 0.00 0.00 0.00 3.93
177 178 1.164411 CCGATTGTTTGTGCTAGGCA 58.836 50.000 0.00 0.00 35.60 4.75
178 179 1.539388 CCGATTGTTTGTGCTAGGCAA 59.461 47.619 0.00 0.00 41.47 4.52
179 180 2.030363 CCGATTGTTTGTGCTAGGCAAA 60.030 45.455 0.00 0.00 41.47 3.68
180 181 3.551863 CCGATTGTTTGTGCTAGGCAAAA 60.552 43.478 0.00 0.00 41.47 2.44
181 182 3.670055 CGATTGTTTGTGCTAGGCAAAAG 59.330 43.478 0.00 0.00 41.47 2.27
182 183 2.507339 TGTTTGTGCTAGGCAAAAGC 57.493 45.000 2.99 2.99 41.47 3.51
183 184 1.068434 TGTTTGTGCTAGGCAAAAGCC 59.932 47.619 6.78 0.00 41.47 4.35
184 185 1.068434 GTTTGTGCTAGGCAAAAGCCA 59.932 47.619 9.42 0.00 41.47 4.75
185 186 1.631405 TTGTGCTAGGCAAAAGCCAT 58.369 45.000 9.42 0.00 41.47 4.40
186 187 2.505650 TGTGCTAGGCAAAAGCCATA 57.494 45.000 9.42 0.00 41.47 2.74
187 188 3.017048 TGTGCTAGGCAAAAGCCATAT 57.983 42.857 9.42 0.00 41.47 1.78
188 189 3.364549 TGTGCTAGGCAAAAGCCATATT 58.635 40.909 9.42 0.00 41.47 1.28
189 190 3.768757 TGTGCTAGGCAAAAGCCATATTT 59.231 39.130 9.42 0.00 41.47 1.40
190 191 4.142182 TGTGCTAGGCAAAAGCCATATTTC 60.142 41.667 9.42 0.00 41.47 2.17
191 192 4.022603 TGCTAGGCAAAAGCCATATTTCA 58.977 39.130 9.42 0.00 39.30 2.69
192 193 4.465660 TGCTAGGCAAAAGCCATATTTCAA 59.534 37.500 9.42 0.00 39.30 2.69
193 194 5.129155 TGCTAGGCAAAAGCCATATTTCAAT 59.871 36.000 9.42 0.00 39.30 2.57
194 195 5.464389 GCTAGGCAAAAGCCATATTTCAATG 59.536 40.000 9.42 0.00 33.73 2.82
195 196 4.193865 AGGCAAAAGCCATATTTCAATGC 58.806 39.130 9.42 0.00 0.00 3.56
196 197 3.940221 GGCAAAAGCCATATTTCAATGCA 59.060 39.130 0.84 0.00 29.17 3.96
199 200 5.811613 GCAAAAGCCATATTTCAATGCAGTA 59.188 36.000 0.00 0.00 0.00 2.74
237 238 5.221244 GCACACCCTAACAGAAGTCAATTTT 60.221 40.000 0.00 0.00 0.00 1.82
246 247 6.101650 ACAGAAGTCAATTTTCCAATTCCC 57.898 37.500 0.00 0.00 29.41 3.97
267 268 4.500887 CCCTGCATTTTCTAATCCTGCATG 60.501 45.833 0.00 0.00 0.00 4.06
268 269 4.049186 CTGCATTTTCTAATCCTGCATGC 58.951 43.478 11.82 11.82 36.82 4.06
487 1490 4.452733 GAGCCCTCCCCGTCGTTG 62.453 72.222 0.00 0.00 0.00 4.10
559 1562 1.837789 CCTGCTCCATCTCCTGCAT 59.162 57.895 0.00 0.00 34.79 3.96
634 1638 4.115199 GCCTGCATTCCTCCCCGT 62.115 66.667 0.00 0.00 0.00 5.28
657 1661 2.669569 CCGCACCACCACTTCCTG 60.670 66.667 0.00 0.00 0.00 3.86
729 1733 1.081092 CCTCCTCCCTCCTGAACCA 59.919 63.158 0.00 0.00 0.00 3.67
820 1824 0.178947 CCTCCTATCCTCCCTTCGCT 60.179 60.000 0.00 0.00 0.00 4.93
825 1829 0.691078 TATCCTCCCTTCGCTGCCTT 60.691 55.000 0.00 0.00 0.00 4.35
838 1842 2.908940 GCCTTCATGCCCCCGATG 60.909 66.667 0.00 0.00 0.00 3.84
950 1954 4.227134 CCACGCCATCTCCCTCGG 62.227 72.222 0.00 0.00 0.00 4.63
958 1962 3.801068 ATCTCCCTCGGGCTCCTCG 62.801 68.421 0.00 0.00 34.68 4.63
1039 2043 1.518325 CACCATCGCCTACAACACAA 58.482 50.000 0.00 0.00 0.00 3.33
1253 2257 2.270874 GATGATGGGACCCTTGCCGT 62.271 60.000 13.00 0.00 35.45 5.68
1289 2293 2.514824 GAGGACGGGGAATGCTGC 60.515 66.667 0.00 0.00 0.00 5.25
1436 2440 1.648467 GAAGGGATGCAACAGCGGAC 61.648 60.000 0.00 0.00 0.00 4.79
1525 2529 3.329542 TTCCGGCAGATGGTGAGGC 62.330 63.158 0.00 0.00 0.00 4.70
1584 2588 4.073200 GGTTGCTGTGCCCATGCC 62.073 66.667 0.00 0.00 36.33 4.40
1884 2888 2.094078 GCTGTTGGCCAATCTTTATGCA 60.094 45.455 23.66 11.16 34.27 3.96
2067 3071 1.068588 GGGAAAACTGCAAAGTGGACC 59.931 52.381 0.00 0.00 0.00 4.46
2130 3134 7.907214 ATTACAGGTAATCACTTCAACTGTC 57.093 36.000 0.00 0.00 38.50 3.51
2131 3135 5.552870 ACAGGTAATCACTTCAACTGTCT 57.447 39.130 0.00 0.00 32.79 3.41
2132 3136 5.930135 ACAGGTAATCACTTCAACTGTCTT 58.070 37.500 0.00 0.00 32.79 3.01
2133 3137 5.992217 ACAGGTAATCACTTCAACTGTCTTC 59.008 40.000 0.00 0.00 32.79 2.87
2134 3138 6.183361 ACAGGTAATCACTTCAACTGTCTTCT 60.183 38.462 0.00 0.00 32.79 2.85
2135 3139 6.708054 CAGGTAATCACTTCAACTGTCTTCTT 59.292 38.462 0.00 0.00 0.00 2.52
2136 3140 6.708054 AGGTAATCACTTCAACTGTCTTCTTG 59.292 38.462 0.00 0.00 0.00 3.02
2137 3141 6.483640 GGTAATCACTTCAACTGTCTTCTTGT 59.516 38.462 0.00 0.00 0.00 3.16
2138 3142 7.012421 GGTAATCACTTCAACTGTCTTCTTGTT 59.988 37.037 0.00 0.00 0.00 2.83
2139 3143 7.396540 AATCACTTCAACTGTCTTCTTGTTT 57.603 32.000 0.00 0.00 0.00 2.83
2140 3144 6.817765 TCACTTCAACTGTCTTCTTGTTTT 57.182 33.333 0.00 0.00 0.00 2.43
2141 3145 6.842163 TCACTTCAACTGTCTTCTTGTTTTC 58.158 36.000 0.00 0.00 0.00 2.29
2142 3146 6.030228 CACTTCAACTGTCTTCTTGTTTTCC 58.970 40.000 0.00 0.00 0.00 3.13
2143 3147 4.875544 TCAACTGTCTTCTTGTTTTCCG 57.124 40.909 0.00 0.00 0.00 4.30
2144 3148 4.258543 TCAACTGTCTTCTTGTTTTCCGT 58.741 39.130 0.00 0.00 0.00 4.69
2145 3149 4.094294 TCAACTGTCTTCTTGTTTTCCGTG 59.906 41.667 0.00 0.00 0.00 4.94
2146 3150 3.606687 ACTGTCTTCTTGTTTTCCGTGT 58.393 40.909 0.00 0.00 0.00 4.49
2147 3151 4.007659 ACTGTCTTCTTGTTTTCCGTGTT 58.992 39.130 0.00 0.00 0.00 3.32
2148 3152 4.457949 ACTGTCTTCTTGTTTTCCGTGTTT 59.542 37.500 0.00 0.00 0.00 2.83
2149 3153 4.976987 TGTCTTCTTGTTTTCCGTGTTTC 58.023 39.130 0.00 0.00 0.00 2.78
2150 3154 4.698304 TGTCTTCTTGTTTTCCGTGTTTCT 59.302 37.500 0.00 0.00 0.00 2.52
2151 3155 5.182380 TGTCTTCTTGTTTTCCGTGTTTCTT 59.818 36.000 0.00 0.00 0.00 2.52
2152 3156 5.737757 GTCTTCTTGTTTTCCGTGTTTCTTC 59.262 40.000 0.00 0.00 0.00 2.87
2153 3157 5.413213 TCTTCTTGTTTTCCGTGTTTCTTCA 59.587 36.000 0.00 0.00 0.00 3.02
2154 3158 5.630661 TCTTGTTTTCCGTGTTTCTTCAA 57.369 34.783 0.00 0.00 0.00 2.69
2155 3159 5.395642 TCTTGTTTTCCGTGTTTCTTCAAC 58.604 37.500 0.00 0.00 35.71 3.18
2156 3160 4.768130 TGTTTTCCGTGTTTCTTCAACA 57.232 36.364 0.00 0.00 43.55 3.33
2172 3176 8.970691 TTCTTCAACATTTAAGATAGCTTTGC 57.029 30.769 0.00 0.00 35.56 3.68
2173 3177 8.340618 TCTTCAACATTTAAGATAGCTTTGCT 57.659 30.769 0.00 0.00 43.41 3.91
2174 3178 8.454106 TCTTCAACATTTAAGATAGCTTTGCTC 58.546 33.333 0.00 0.00 40.44 4.26
2175 3179 7.686438 TCAACATTTAAGATAGCTTTGCTCA 57.314 32.000 0.00 0.00 40.44 4.26
2240 3290 6.899393 TTTATGGTCAGTTCAAGAGCAATT 57.101 33.333 0.00 0.00 45.33 2.32
2308 3358 4.009675 TGTCCTGCTGTGAATAAATGTCC 58.990 43.478 0.00 0.00 0.00 4.02
2325 3375 7.486407 AAATGTCCTGCTAAAAATTGGAGAT 57.514 32.000 0.00 0.00 33.10 2.75
2345 3398 5.999044 AGATCCTACATTGCTGACAAGAAT 58.001 37.500 0.00 0.00 39.69 2.40
2351 3404 6.149973 CCTACATTGCTGACAAGAATGAAGAA 59.850 38.462 11.34 0.00 39.69 2.52
2367 3420 6.690194 ATGAAGAAATGTGAGTAATGCCTC 57.310 37.500 0.00 0.00 0.00 4.70
2466 3519 9.476928 GGTGATAATGATGGGTAGTAGTAGTAT 57.523 37.037 0.00 0.00 0.00 2.12
2544 3597 7.817418 TGGGGCATATTCTGATTACTTTTAC 57.183 36.000 0.00 0.00 0.00 2.01
2607 3660 9.378551 TGAATAGACACAGTGTATATTGGTTTC 57.621 33.333 29.78 19.46 42.67 2.78
2654 3708 5.470437 GCTTTTCAAAGTGTCTAACTAGCCT 59.530 40.000 1.37 0.00 38.56 4.58
2655 3709 6.649557 GCTTTTCAAAGTGTCTAACTAGCCTA 59.350 38.462 1.37 0.00 38.56 3.93
2656 3710 7.334671 GCTTTTCAAAGTGTCTAACTAGCCTAT 59.665 37.037 1.37 0.00 38.56 2.57
2657 3711 9.871238 CTTTTCAAAGTGTCTAACTAGCCTATA 57.129 33.333 0.00 0.00 38.56 1.31
2676 3730 9.681839 AGCCTATATAATAGATTAGCCATCCTT 57.318 33.333 0.00 0.00 31.20 3.36
2682 3736 6.942163 AATAGATTAGCCATCCTTAGAGCA 57.058 37.500 0.00 0.00 31.20 4.26
2683 3737 6.942163 ATAGATTAGCCATCCTTAGAGCAA 57.058 37.500 0.00 0.00 31.20 3.91
2684 3738 4.967036 AGATTAGCCATCCTTAGAGCAAC 58.033 43.478 0.00 0.00 31.20 4.17
2685 3739 4.657969 AGATTAGCCATCCTTAGAGCAACT 59.342 41.667 0.00 0.00 31.20 3.16
2686 3740 2.998316 AGCCATCCTTAGAGCAACTC 57.002 50.000 0.00 0.00 0.00 3.01
2687 3741 1.488393 AGCCATCCTTAGAGCAACTCC 59.512 52.381 0.00 0.00 0.00 3.85
2688 3742 1.210478 GCCATCCTTAGAGCAACTCCA 59.790 52.381 0.00 0.00 0.00 3.86
2689 3743 2.356125 GCCATCCTTAGAGCAACTCCAA 60.356 50.000 0.00 0.00 0.00 3.53
2690 3744 3.274288 CCATCCTTAGAGCAACTCCAAC 58.726 50.000 0.00 0.00 0.00 3.77
2691 3745 3.274288 CATCCTTAGAGCAACTCCAACC 58.726 50.000 0.00 0.00 0.00 3.77
2692 3746 2.334977 TCCTTAGAGCAACTCCAACCA 58.665 47.619 0.00 0.00 0.00 3.67
2693 3747 2.303022 TCCTTAGAGCAACTCCAACCAG 59.697 50.000 0.00 0.00 0.00 4.00
2694 3748 2.616510 CCTTAGAGCAACTCCAACCAGG 60.617 54.545 0.00 0.00 39.47 4.45
2695 3749 0.324943 TAGAGCAACTCCAACCAGGC 59.675 55.000 0.00 0.00 37.29 4.85
2696 3750 2.281761 AGCAACTCCAACCAGGCG 60.282 61.111 0.00 0.00 37.29 5.52
2697 3751 2.281484 GCAACTCCAACCAGGCGA 60.281 61.111 0.00 0.00 37.29 5.54
2698 3752 2.617274 GCAACTCCAACCAGGCGAC 61.617 63.158 0.00 0.00 37.29 5.19
2699 3753 1.966451 CAACTCCAACCAGGCGACC 60.966 63.158 0.00 0.00 37.29 4.79
2700 3754 3.192103 AACTCCAACCAGGCGACCC 62.192 63.158 0.00 0.00 37.29 4.46
2701 3755 3.636231 CTCCAACCAGGCGACCCA 61.636 66.667 0.00 0.00 37.29 4.51
2702 3756 2.933287 TCCAACCAGGCGACCCAT 60.933 61.111 0.00 0.00 37.29 4.00
2703 3757 2.035626 CCAACCAGGCGACCCATT 59.964 61.111 0.00 0.00 0.00 3.16
2704 3758 1.606313 CCAACCAGGCGACCCATTT 60.606 57.895 0.00 0.00 0.00 2.32
2705 3759 1.595093 CCAACCAGGCGACCCATTTC 61.595 60.000 0.00 0.00 0.00 2.17
2706 3760 1.674322 AACCAGGCGACCCATTTCG 60.674 57.895 0.00 0.00 42.15 3.46
2707 3761 2.046314 CCAGGCGACCCATTTCGT 60.046 61.111 0.00 0.00 41.26 3.85
2708 3762 2.106683 CCAGGCGACCCATTTCGTC 61.107 63.158 0.00 0.00 44.12 4.20
2709 3763 2.106683 CAGGCGACCCATTTCGTCC 61.107 63.158 0.00 0.00 44.90 4.79
2710 3764 3.192922 GGCGACCCATTTCGTCCG 61.193 66.667 0.00 0.00 41.26 4.79
2711 3765 3.861263 GCGACCCATTTCGTCCGC 61.861 66.667 0.00 0.00 41.26 5.54
2712 3766 3.192922 CGACCCATTTCGTCCGCC 61.193 66.667 0.00 0.00 34.16 6.13
2713 3767 2.822701 GACCCATTTCGTCCGCCC 60.823 66.667 0.00 0.00 0.00 6.13
2714 3768 3.615509 GACCCATTTCGTCCGCCCA 62.616 63.158 0.00 0.00 0.00 5.36
2715 3769 3.131478 CCCATTTCGTCCGCCCAC 61.131 66.667 0.00 0.00 0.00 4.61
2716 3770 3.496131 CCATTTCGTCCGCCCACG 61.496 66.667 0.00 0.00 41.36 4.94
2717 3771 2.740826 CATTTCGTCCGCCCACGT 60.741 61.111 2.31 0.00 40.79 4.49
2718 3772 2.433664 ATTTCGTCCGCCCACGTC 60.434 61.111 2.31 0.00 40.79 4.34
2719 3773 3.945304 ATTTCGTCCGCCCACGTCC 62.945 63.158 2.31 0.00 40.79 4.79
2723 3777 4.974989 GTCCGCCCACGTCCGTTT 62.975 66.667 0.00 0.00 37.70 3.60
2724 3778 4.973055 TCCGCCCACGTCCGTTTG 62.973 66.667 0.00 0.00 37.70 2.93
2728 3782 2.667199 CCCACGTCCGTTTGGGTC 60.667 66.667 7.10 0.00 46.74 4.46
2732 3786 3.411351 CGTCCGTTTGGGTCGCTG 61.411 66.667 0.00 0.00 40.30 5.18
2733 3787 3.723348 GTCCGTTTGGGTCGCTGC 61.723 66.667 0.00 0.00 37.00 5.25
2737 3791 3.723348 GTTTGGGTCGCTGCGGAC 61.723 66.667 23.03 17.49 36.18 4.79
2738 3792 4.243008 TTTGGGTCGCTGCGGACA 62.243 61.111 23.03 15.28 38.70 4.02
2739 3793 3.758973 TTTGGGTCGCTGCGGACAA 62.759 57.895 23.03 19.88 38.70 3.18
2740 3794 3.758973 TTGGGTCGCTGCGGACAAA 62.759 57.895 23.03 12.01 38.70 2.83
2741 3795 2.975799 GGGTCGCTGCGGACAAAA 60.976 61.111 23.03 0.00 38.70 2.44
2742 3796 2.548295 GGGTCGCTGCGGACAAAAA 61.548 57.895 23.03 0.00 38.70 1.94
2743 3797 1.370051 GGTCGCTGCGGACAAAAAC 60.370 57.895 23.03 10.62 38.70 2.43
2744 3798 1.721133 GTCGCTGCGGACAAAAACG 60.721 57.895 23.03 0.00 36.91 3.60
2745 3799 1.883544 TCGCTGCGGACAAAAACGA 60.884 52.632 23.03 0.00 0.00 3.85
2746 3800 1.206578 CGCTGCGGACAAAAACGAT 59.793 52.632 15.40 0.00 0.00 3.73
2747 3801 1.059657 CGCTGCGGACAAAAACGATG 61.060 55.000 15.40 0.00 0.00 3.84
2748 3802 0.729140 GCTGCGGACAAAAACGATGG 60.729 55.000 0.00 0.00 0.00 3.51
2749 3803 0.729140 CTGCGGACAAAAACGATGGC 60.729 55.000 0.00 0.00 0.00 4.40
2750 3804 1.443702 GCGGACAAAAACGATGGCC 60.444 57.895 0.00 0.00 42.97 5.36
2751 3805 1.211709 CGGACAAAAACGATGGCCC 59.788 57.895 0.00 0.00 43.54 5.80
2752 3806 1.519751 CGGACAAAAACGATGGCCCA 61.520 55.000 0.00 0.00 43.54 5.36
2753 3807 0.676736 GGACAAAAACGATGGCCCAA 59.323 50.000 0.00 0.00 40.33 4.12
2754 3808 1.604438 GGACAAAAACGATGGCCCAAC 60.604 52.381 0.00 0.00 40.33 3.77
2755 3809 0.031449 ACAAAAACGATGGCCCAACG 59.969 50.000 12.24 12.24 35.82 4.10
2756 3810 1.006688 AAAAACGATGGCCCAACGC 60.007 52.632 13.79 0.00 33.06 4.84
2757 3811 2.741116 AAAAACGATGGCCCAACGCG 62.741 55.000 13.79 3.53 38.94 6.01
2767 3821 3.202001 CCAACGCGCCGATCCATT 61.202 61.111 5.73 0.00 0.00 3.16
2768 3822 2.324477 CAACGCGCCGATCCATTC 59.676 61.111 5.73 0.00 0.00 2.67
2769 3823 2.895372 AACGCGCCGATCCATTCC 60.895 61.111 5.73 0.00 0.00 3.01
2770 3824 4.910585 ACGCGCCGATCCATTCCC 62.911 66.667 5.73 0.00 0.00 3.97
2771 3825 4.908687 CGCGCCGATCCATTCCCA 62.909 66.667 0.00 0.00 0.00 4.37
2772 3826 2.281761 GCGCCGATCCATTCCCAT 60.282 61.111 0.00 0.00 0.00 4.00
2773 3827 1.003839 GCGCCGATCCATTCCCATA 60.004 57.895 0.00 0.00 0.00 2.74
2774 3828 0.605319 GCGCCGATCCATTCCCATAA 60.605 55.000 0.00 0.00 0.00 1.90
2775 3829 1.950484 GCGCCGATCCATTCCCATAAT 60.950 52.381 0.00 0.00 0.00 1.28
2776 3830 2.009774 CGCCGATCCATTCCCATAATC 58.990 52.381 0.00 0.00 0.00 1.75
2777 3831 2.369394 GCCGATCCATTCCCATAATCC 58.631 52.381 0.00 0.00 0.00 3.01
2778 3832 2.632377 CCGATCCATTCCCATAATCCG 58.368 52.381 0.00 0.00 0.00 4.18
2779 3833 2.027192 CCGATCCATTCCCATAATCCGT 60.027 50.000 0.00 0.00 0.00 4.69
2780 3834 3.262420 CGATCCATTCCCATAATCCGTC 58.738 50.000 0.00 0.00 0.00 4.79
2781 3835 3.610911 GATCCATTCCCATAATCCGTCC 58.389 50.000 0.00 0.00 0.00 4.79
2782 3836 1.346395 TCCATTCCCATAATCCGTCCG 59.654 52.381 0.00 0.00 0.00 4.79
2783 3837 1.156736 CATTCCCATAATCCGTCCGC 58.843 55.000 0.00 0.00 0.00 5.54
2784 3838 1.056660 ATTCCCATAATCCGTCCGCT 58.943 50.000 0.00 0.00 0.00 5.52
2785 3839 0.834612 TTCCCATAATCCGTCCGCTT 59.165 50.000 0.00 0.00 0.00 4.68
2786 3840 0.391597 TCCCATAATCCGTCCGCTTC 59.608 55.000 0.00 0.00 0.00 3.86
2787 3841 0.944311 CCCATAATCCGTCCGCTTCG 60.944 60.000 0.00 0.00 0.00 3.79
2788 3842 1.557443 CCATAATCCGTCCGCTTCGC 61.557 60.000 0.00 0.00 0.00 4.70
2806 3860 3.428282 GTTCGCGCGGACCCATTT 61.428 61.111 30.82 0.00 0.00 2.32
2807 3861 3.122323 TTCGCGCGGACCCATTTC 61.122 61.111 31.69 0.00 0.00 2.17
2808 3862 3.599285 TTCGCGCGGACCCATTTCT 62.599 57.895 31.69 0.00 0.00 2.52
2809 3863 3.864686 CGCGCGGACCCATTTCTG 61.865 66.667 24.84 0.00 0.00 3.02
2810 3864 4.179579 GCGCGGACCCATTTCTGC 62.180 66.667 8.83 0.00 43.46 4.26
2811 3865 3.508840 CGCGGACCCATTTCTGCC 61.509 66.667 0.00 0.00 43.94 4.85
2812 3866 3.140814 GCGGACCCATTTCTGCCC 61.141 66.667 0.00 0.00 41.40 5.36
2813 3867 2.440247 CGGACCCATTTCTGCCCC 60.440 66.667 0.00 0.00 0.00 5.80
2814 3868 2.770130 GGACCCATTTCTGCCCCA 59.230 61.111 0.00 0.00 0.00 4.96
2815 3869 1.078347 GGACCCATTTCTGCCCCAA 59.922 57.895 0.00 0.00 0.00 4.12
2816 3870 0.544120 GGACCCATTTCTGCCCCAAA 60.544 55.000 0.00 0.00 0.00 3.28
2817 3871 1.571955 GACCCATTTCTGCCCCAAAT 58.428 50.000 0.00 0.00 0.00 2.32
2818 3872 1.908619 GACCCATTTCTGCCCCAAATT 59.091 47.619 0.00 0.00 0.00 1.82
2819 3873 2.305635 GACCCATTTCTGCCCCAAATTT 59.694 45.455 0.00 0.00 0.00 1.82
2820 3874 2.040145 ACCCATTTCTGCCCCAAATTTG 59.960 45.455 11.40 11.40 0.00 2.32
2821 3875 2.086094 CCATTTCTGCCCCAAATTTGC 58.914 47.619 12.92 2.29 0.00 3.68
2822 3876 1.733360 CATTTCTGCCCCAAATTTGCG 59.267 47.619 12.92 4.15 0.00 4.85
2823 3877 0.602372 TTTCTGCCCCAAATTTGCGC 60.602 50.000 12.92 15.44 0.00 6.09
2824 3878 2.434709 CTGCCCCAAATTTGCGCC 60.435 61.111 19.74 8.80 0.00 6.53
2825 3879 2.921972 TGCCCCAAATTTGCGCCT 60.922 55.556 19.74 0.00 0.00 5.52
2826 3880 2.434709 GCCCCAAATTTGCGCCTG 60.435 61.111 12.92 0.00 0.00 4.85
2827 3881 2.941616 GCCCCAAATTTGCGCCTGA 61.942 57.895 12.92 0.00 0.00 3.86
2828 3882 1.670590 CCCCAAATTTGCGCCTGAA 59.329 52.632 12.92 0.00 0.00 3.02
2829 3883 0.034616 CCCCAAATTTGCGCCTGAAA 59.965 50.000 12.92 0.00 0.00 2.69
2830 3884 1.338960 CCCCAAATTTGCGCCTGAAAT 60.339 47.619 12.92 0.89 0.00 2.17
2831 3885 1.733360 CCCAAATTTGCGCCTGAAATG 59.267 47.619 12.92 0.00 0.00 2.32
2832 3886 1.129064 CCAAATTTGCGCCTGAAATGC 59.871 47.619 12.92 0.00 0.00 3.56
2838 3892 3.118454 CGCCTGAAATGCGTCGGT 61.118 61.111 0.00 0.00 46.01 4.69
2839 3893 2.480555 GCCTGAAATGCGTCGGTG 59.519 61.111 0.00 0.00 0.00 4.94
2840 3894 2.480555 CCTGAAATGCGTCGGTGC 59.519 61.111 0.00 0.00 0.00 5.01
2850 3904 3.470567 GTCGGTGCAGACGCGAAG 61.471 66.667 15.93 2.43 42.97 3.79
2916 3970 3.989787 GCCGGCCAACAACCCAAG 61.990 66.667 18.11 0.00 0.00 3.61
2917 3971 3.989787 CCGGCCAACAACCCAAGC 61.990 66.667 2.24 0.00 0.00 4.01
2918 3972 4.341502 CGGCCAACAACCCAAGCG 62.342 66.667 2.24 0.00 0.00 4.68
2919 3973 3.989787 GGCCAACAACCCAAGCGG 61.990 66.667 0.00 0.00 37.81 5.52
2931 3985 2.940410 ACCCAAGCGGTCATAATTAACG 59.060 45.455 0.00 0.00 43.58 3.18
2932 3986 4.785238 ACCCAAGCGGTCATAATTAACGC 61.785 47.826 15.04 15.04 43.58 4.84
2934 3988 3.721466 GCGGTCATAATTAACGCGG 57.279 52.632 12.47 0.00 40.84 6.46
2935 3989 0.383860 GCGGTCATAATTAACGCGGC 60.384 55.000 12.47 0.00 40.84 6.53
2936 3990 0.233848 CGGTCATAATTAACGCGGCC 59.766 55.000 12.47 0.00 0.00 6.13
2937 3991 1.301423 GGTCATAATTAACGCGGCCA 58.699 50.000 12.47 0.00 0.00 5.36
2938 3992 1.003223 GGTCATAATTAACGCGGCCAC 60.003 52.381 12.47 0.00 0.00 5.01
2939 3993 1.003223 GTCATAATTAACGCGGCCACC 60.003 52.381 12.47 0.00 0.00 4.61
2940 3994 1.134340 TCATAATTAACGCGGCCACCT 60.134 47.619 12.47 0.00 0.00 4.00
2941 3995 2.102757 TCATAATTAACGCGGCCACCTA 59.897 45.455 12.47 0.00 0.00 3.08
2942 3996 1.938625 TAATTAACGCGGCCACCTAC 58.061 50.000 12.47 0.00 0.00 3.18
2943 3997 0.745486 AATTAACGCGGCCACCTACC 60.745 55.000 12.47 0.00 0.00 3.18
2966 4020 3.663176 CCCGCTTGGCAGTGTGTG 61.663 66.667 0.00 0.00 0.00 3.82
2967 4021 3.663176 CCGCTTGGCAGTGTGTGG 61.663 66.667 0.00 0.00 0.00 4.17
2968 4022 2.591429 CGCTTGGCAGTGTGTGGA 60.591 61.111 0.00 0.00 0.00 4.02
2969 4023 2.186160 CGCTTGGCAGTGTGTGGAA 61.186 57.895 0.00 0.00 0.00 3.53
2970 4024 1.656441 GCTTGGCAGTGTGTGGAAG 59.344 57.895 0.00 0.00 0.00 3.46
2971 4025 1.799258 GCTTGGCAGTGTGTGGAAGG 61.799 60.000 0.00 0.00 0.00 3.46
2972 4026 1.152777 TTGGCAGTGTGTGGAAGGG 60.153 57.895 0.00 0.00 0.00 3.95
2973 4027 2.985847 GGCAGTGTGTGGAAGGGC 60.986 66.667 0.00 0.00 0.00 5.19
2974 4028 2.985847 GCAGTGTGTGGAAGGGCC 60.986 66.667 0.00 0.00 37.10 5.80
2975 4029 2.669569 CAGTGTGTGGAAGGGCCG 60.670 66.667 0.00 0.00 40.66 6.13
2991 4045 2.978010 CGCGTGCCCTTCCTGTTT 60.978 61.111 0.00 0.00 0.00 2.83
2992 4046 1.669760 CGCGTGCCCTTCCTGTTTA 60.670 57.895 0.00 0.00 0.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.281182 CCGCATCAAGTAGGGTATAGTTCT 59.719 45.833 0.00 0.00 0.00 3.01
1 2 4.557205 CCGCATCAAGTAGGGTATAGTTC 58.443 47.826 0.00 0.00 0.00 3.01
2 3 3.323979 CCCGCATCAAGTAGGGTATAGTT 59.676 47.826 0.00 0.00 39.05 2.24
3 4 2.897969 CCCGCATCAAGTAGGGTATAGT 59.102 50.000 0.00 0.00 39.05 2.12
4 5 3.594603 CCCGCATCAAGTAGGGTATAG 57.405 52.381 0.00 0.00 39.05 1.31
10 11 0.462047 GTGGACCCGCATCAAGTAGG 60.462 60.000 0.00 0.00 0.00 3.18
11 12 0.249120 TGTGGACCCGCATCAAGTAG 59.751 55.000 0.00 0.00 0.00 2.57
12 13 0.687920 TTGTGGACCCGCATCAAGTA 59.312 50.000 2.84 0.00 36.27 2.24
13 14 0.889186 GTTGTGGACCCGCATCAAGT 60.889 55.000 2.84 0.00 36.27 3.16
14 15 1.586154 GGTTGTGGACCCGCATCAAG 61.586 60.000 2.84 0.00 43.06 3.02
15 16 1.602323 GGTTGTGGACCCGCATCAA 60.602 57.895 2.84 0.00 43.06 2.57
16 17 2.033448 GGTTGTGGACCCGCATCA 59.967 61.111 2.84 0.00 43.06 3.07
24 25 1.947456 GAAGGTTGTGAGGTTGTGGAC 59.053 52.381 0.00 0.00 0.00 4.02
25 26 1.133915 GGAAGGTTGTGAGGTTGTGGA 60.134 52.381 0.00 0.00 0.00 4.02
26 27 1.318576 GGAAGGTTGTGAGGTTGTGG 58.681 55.000 0.00 0.00 0.00 4.17
27 28 1.676006 GTGGAAGGTTGTGAGGTTGTG 59.324 52.381 0.00 0.00 0.00 3.33
28 29 1.745827 CGTGGAAGGTTGTGAGGTTGT 60.746 52.381 0.00 0.00 0.00 3.32
29 30 0.944386 CGTGGAAGGTTGTGAGGTTG 59.056 55.000 0.00 0.00 0.00 3.77
30 31 0.818040 GCGTGGAAGGTTGTGAGGTT 60.818 55.000 0.00 0.00 0.00 3.50
31 32 1.227853 GCGTGGAAGGTTGTGAGGT 60.228 57.895 0.00 0.00 0.00 3.85
32 33 2.317609 CGCGTGGAAGGTTGTGAGG 61.318 63.158 0.00 0.00 0.00 3.86
33 34 0.670546 ATCGCGTGGAAGGTTGTGAG 60.671 55.000 5.77 0.00 0.00 3.51
34 35 0.604073 TATCGCGTGGAAGGTTGTGA 59.396 50.000 5.77 0.00 0.00 3.58
35 36 1.327460 CATATCGCGTGGAAGGTTGTG 59.673 52.381 5.77 0.00 0.00 3.33
36 37 1.206132 TCATATCGCGTGGAAGGTTGT 59.794 47.619 5.77 0.00 0.00 3.32
37 38 1.934589 TCATATCGCGTGGAAGGTTG 58.065 50.000 5.77 0.00 0.00 3.77
38 39 2.910688 ATCATATCGCGTGGAAGGTT 57.089 45.000 5.77 0.00 0.00 3.50
39 40 2.352814 GCTATCATATCGCGTGGAAGGT 60.353 50.000 5.77 0.00 0.00 3.50
40 41 2.263077 GCTATCATATCGCGTGGAAGG 58.737 52.381 5.77 0.00 0.00 3.46
41 42 2.946564 TGCTATCATATCGCGTGGAAG 58.053 47.619 5.77 0.00 0.00 3.46
42 43 3.378911 TTGCTATCATATCGCGTGGAA 57.621 42.857 5.77 0.00 0.00 3.53
43 44 3.511699 GATTGCTATCATATCGCGTGGA 58.488 45.455 5.77 0.00 0.00 4.02
44 45 2.279921 CGATTGCTATCATATCGCGTGG 59.720 50.000 5.77 0.00 35.36 4.94
45 46 2.917343 ACGATTGCTATCATATCGCGTG 59.083 45.455 5.77 0.00 43.57 5.34
46 47 3.172050 GACGATTGCTATCATATCGCGT 58.828 45.455 5.77 0.00 43.57 6.01
47 48 3.171277 TGACGATTGCTATCATATCGCG 58.829 45.455 0.00 0.00 43.57 5.87
48 49 5.346011 TCTTTGACGATTGCTATCATATCGC 59.654 40.000 8.85 0.00 43.57 4.58
49 50 6.934561 TCTTTGACGATTGCTATCATATCG 57.065 37.500 8.85 0.00 44.86 2.92
60 61 6.369428 TAGGGACTGCAATCTTTGACGATTG 61.369 44.000 8.69 8.69 45.22 2.67
61 62 2.749621 GGGACTGCAATCTTTGACGATT 59.250 45.455 0.00 0.00 34.07 3.34
62 63 2.026822 AGGGACTGCAATCTTTGACGAT 60.027 45.455 0.00 0.00 37.18 3.73
63 64 1.347707 AGGGACTGCAATCTTTGACGA 59.652 47.619 0.00 0.00 37.18 4.20
64 65 1.813513 AGGGACTGCAATCTTTGACG 58.186 50.000 0.00 0.00 37.18 4.35
65 66 3.935828 GTCTAGGGACTGCAATCTTTGAC 59.064 47.826 0.00 0.00 41.52 3.18
66 67 3.055094 GGTCTAGGGACTGCAATCTTTGA 60.055 47.826 0.00 0.00 41.52 2.69
67 68 3.054802 AGGTCTAGGGACTGCAATCTTTG 60.055 47.826 0.00 0.00 41.52 2.77
68 69 3.185455 AGGTCTAGGGACTGCAATCTTT 58.815 45.455 0.00 0.00 41.52 2.52
69 70 2.839228 AGGTCTAGGGACTGCAATCTT 58.161 47.619 0.00 0.00 41.52 2.40
70 71 2.559381 AGGTCTAGGGACTGCAATCT 57.441 50.000 0.00 0.00 41.52 2.40
71 72 3.031736 TGTAGGTCTAGGGACTGCAATC 58.968 50.000 0.00 0.00 41.52 2.67
72 73 3.116096 TGTAGGTCTAGGGACTGCAAT 57.884 47.619 0.00 0.00 41.52 3.56
73 74 2.615986 TGTAGGTCTAGGGACTGCAA 57.384 50.000 0.00 0.00 41.52 4.08
74 75 2.615986 TTGTAGGTCTAGGGACTGCA 57.384 50.000 0.00 0.00 41.52 4.41
75 76 4.192317 CAATTTGTAGGTCTAGGGACTGC 58.808 47.826 0.00 0.00 41.52 4.40
76 77 5.422214 ACAATTTGTAGGTCTAGGGACTG 57.578 43.478 0.00 0.00 41.52 3.51
77 78 5.785940 AGAACAATTTGTAGGTCTAGGGACT 59.214 40.000 1.76 0.00 46.37 3.85
78 79 6.051179 AGAACAATTTGTAGGTCTAGGGAC 57.949 41.667 1.76 0.00 41.43 4.46
79 80 5.189145 GGAGAACAATTTGTAGGTCTAGGGA 59.811 44.000 1.76 0.00 0.00 4.20
80 81 5.189934 AGGAGAACAATTTGTAGGTCTAGGG 59.810 44.000 1.76 0.00 0.00 3.53
81 82 6.301169 AGGAGAACAATTTGTAGGTCTAGG 57.699 41.667 1.76 0.00 0.00 3.02
82 83 7.386851 TGAAGGAGAACAATTTGTAGGTCTAG 58.613 38.462 1.76 0.00 0.00 2.43
83 84 7.311092 TGAAGGAGAACAATTTGTAGGTCTA 57.689 36.000 1.76 0.00 0.00 2.59
84 85 6.187727 TGAAGGAGAACAATTTGTAGGTCT 57.812 37.500 1.76 2.24 0.00 3.85
85 86 7.174946 TGAATGAAGGAGAACAATTTGTAGGTC 59.825 37.037 1.76 0.00 0.00 3.85
86 87 7.004086 TGAATGAAGGAGAACAATTTGTAGGT 58.996 34.615 1.76 0.00 0.00 3.08
87 88 7.452880 TGAATGAAGGAGAACAATTTGTAGG 57.547 36.000 1.76 0.00 0.00 3.18
88 89 7.907045 CGATGAATGAAGGAGAACAATTTGTAG 59.093 37.037 1.76 0.00 0.00 2.74
89 90 7.390440 ACGATGAATGAAGGAGAACAATTTGTA 59.610 33.333 1.76 0.00 0.00 2.41
90 91 6.207417 ACGATGAATGAAGGAGAACAATTTGT 59.793 34.615 0.00 0.00 0.00 2.83
91 92 6.615088 ACGATGAATGAAGGAGAACAATTTG 58.385 36.000 0.00 0.00 0.00 2.32
92 93 6.824305 ACGATGAATGAAGGAGAACAATTT 57.176 33.333 0.00 0.00 0.00 1.82
93 94 7.065085 CAGTACGATGAATGAAGGAGAACAATT 59.935 37.037 0.00 0.00 0.00 2.32
94 95 6.536582 CAGTACGATGAATGAAGGAGAACAAT 59.463 38.462 0.00 0.00 0.00 2.71
95 96 5.869344 CAGTACGATGAATGAAGGAGAACAA 59.131 40.000 0.00 0.00 0.00 2.83
96 97 5.185056 TCAGTACGATGAATGAAGGAGAACA 59.815 40.000 0.00 0.00 0.00 3.18
97 98 5.651530 TCAGTACGATGAATGAAGGAGAAC 58.348 41.667 0.00 0.00 0.00 3.01
98 99 5.914898 TCAGTACGATGAATGAAGGAGAA 57.085 39.130 0.00 0.00 0.00 2.87
129 130 9.534565 GCAACTAGATTACTGTCAATTCAGATA 57.465 33.333 0.00 0.00 38.63 1.98
130 131 8.043113 TGCAACTAGATTACTGTCAATTCAGAT 58.957 33.333 0.00 0.00 38.63 2.90
131 132 7.386059 TGCAACTAGATTACTGTCAATTCAGA 58.614 34.615 0.00 0.00 38.63 3.27
132 133 7.601073 TGCAACTAGATTACTGTCAATTCAG 57.399 36.000 0.00 0.00 40.80 3.02
133 134 7.094805 GGTTGCAACTAGATTACTGTCAATTCA 60.095 37.037 27.64 0.00 0.00 2.57
134 135 7.244192 GGTTGCAACTAGATTACTGTCAATTC 58.756 38.462 27.64 2.02 0.00 2.17
135 136 6.128282 CGGTTGCAACTAGATTACTGTCAATT 60.128 38.462 27.64 0.00 0.00 2.32
136 137 5.351465 CGGTTGCAACTAGATTACTGTCAAT 59.649 40.000 27.64 0.00 0.00 2.57
137 138 4.688879 CGGTTGCAACTAGATTACTGTCAA 59.311 41.667 27.64 0.00 0.00 3.18
138 139 4.021807 TCGGTTGCAACTAGATTACTGTCA 60.022 41.667 27.64 2.39 0.00 3.58
139 140 4.491676 TCGGTTGCAACTAGATTACTGTC 58.508 43.478 27.64 6.75 0.00 3.51
140 141 4.530710 TCGGTTGCAACTAGATTACTGT 57.469 40.909 27.64 0.00 0.00 3.55
141 142 5.351465 ACAATCGGTTGCAACTAGATTACTG 59.649 40.000 32.39 27.17 38.96 2.74
142 143 5.488341 ACAATCGGTTGCAACTAGATTACT 58.512 37.500 32.39 24.01 38.96 2.24
143 144 5.796350 ACAATCGGTTGCAACTAGATTAC 57.204 39.130 32.39 16.95 38.96 1.89
144 145 6.205853 ACAAACAATCGGTTGCAACTAGATTA 59.794 34.615 32.39 15.97 40.35 1.75
145 146 5.009610 ACAAACAATCGGTTGCAACTAGATT 59.990 36.000 30.01 30.01 40.35 2.40
146 147 4.518970 ACAAACAATCGGTTGCAACTAGAT 59.481 37.500 27.64 25.96 40.35 1.98
147 148 3.880490 ACAAACAATCGGTTGCAACTAGA 59.120 39.130 27.64 25.06 40.35 2.43
148 149 3.974401 CACAAACAATCGGTTGCAACTAG 59.026 43.478 27.64 21.17 40.35 2.57
149 150 3.793801 GCACAAACAATCGGTTGCAACTA 60.794 43.478 27.64 17.11 40.35 2.24
150 151 2.808244 CACAAACAATCGGTTGCAACT 58.192 42.857 27.64 6.77 40.35 3.16
151 152 1.257675 GCACAAACAATCGGTTGCAAC 59.742 47.619 21.59 21.59 40.35 4.17
152 153 1.135915 AGCACAAACAATCGGTTGCAA 59.864 42.857 8.70 0.00 40.35 4.08
153 154 0.743688 AGCACAAACAATCGGTTGCA 59.256 45.000 8.70 0.00 40.35 4.08
154 155 2.584791 CTAGCACAAACAATCGGTTGC 58.415 47.619 8.70 0.00 40.35 4.17
155 156 2.668279 GCCTAGCACAAACAATCGGTTG 60.668 50.000 6.92 6.92 40.35 3.77
156 157 1.539827 GCCTAGCACAAACAATCGGTT 59.460 47.619 0.00 0.00 42.98 4.44
157 158 1.165270 GCCTAGCACAAACAATCGGT 58.835 50.000 0.00 0.00 0.00 4.69
158 159 1.164411 TGCCTAGCACAAACAATCGG 58.836 50.000 0.00 0.00 31.71 4.18
159 160 2.987413 TTGCCTAGCACAAACAATCG 57.013 45.000 0.00 0.00 38.71 3.34
160 161 3.429881 GCTTTTGCCTAGCACAAACAATC 59.570 43.478 8.25 0.00 38.71 2.67
161 162 3.392882 GCTTTTGCCTAGCACAAACAAT 58.607 40.909 8.25 0.00 38.71 2.71
162 163 2.820330 GCTTTTGCCTAGCACAAACAA 58.180 42.857 8.25 0.00 38.71 2.83
163 164 2.507339 GCTTTTGCCTAGCACAAACA 57.493 45.000 8.25 1.98 38.71 2.83
175 176 4.632688 ACTGCATTGAAATATGGCTTTTGC 59.367 37.500 0.00 0.00 46.64 3.68
176 177 6.019318 GCTACTGCATTGAAATATGGCTTTTG 60.019 38.462 0.00 0.00 39.41 2.44
177 178 6.044682 GCTACTGCATTGAAATATGGCTTTT 58.955 36.000 0.00 0.00 39.41 2.27
178 179 5.361857 AGCTACTGCATTGAAATATGGCTTT 59.638 36.000 0.00 0.00 42.74 3.51
179 180 4.891756 AGCTACTGCATTGAAATATGGCTT 59.108 37.500 0.00 0.00 42.74 4.35
180 181 4.467769 AGCTACTGCATTGAAATATGGCT 58.532 39.130 0.00 0.00 42.74 4.75
181 182 4.843220 AGCTACTGCATTGAAATATGGC 57.157 40.909 0.00 0.00 42.74 4.40
182 183 6.381481 TGAAGCTACTGCATTGAAATATGG 57.619 37.500 0.00 0.00 42.74 2.74
183 184 5.913514 GCTGAAGCTACTGCATTGAAATATG 59.086 40.000 0.00 0.00 42.74 1.78
184 185 5.591472 TGCTGAAGCTACTGCATTGAAATAT 59.409 36.000 3.61 0.00 42.74 1.28
185 186 4.943093 TGCTGAAGCTACTGCATTGAAATA 59.057 37.500 3.61 0.00 42.74 1.40
186 187 3.760151 TGCTGAAGCTACTGCATTGAAAT 59.240 39.130 3.61 0.00 42.74 2.17
187 188 3.148412 TGCTGAAGCTACTGCATTGAAA 58.852 40.909 3.61 0.00 42.74 2.69
188 189 2.745821 CTGCTGAAGCTACTGCATTGAA 59.254 45.455 3.61 0.00 42.04 2.69
189 190 2.027837 TCTGCTGAAGCTACTGCATTGA 60.028 45.455 3.61 1.63 42.04 2.57
190 191 2.353323 TCTGCTGAAGCTACTGCATTG 58.647 47.619 3.61 0.00 42.04 2.82
191 192 2.775911 TCTGCTGAAGCTACTGCATT 57.224 45.000 3.61 0.00 42.04 3.56
192 193 3.803021 GCTATCTGCTGAAGCTACTGCAT 60.803 47.826 15.43 0.00 42.04 3.96
193 194 2.482664 GCTATCTGCTGAAGCTACTGCA 60.483 50.000 15.43 7.14 42.66 4.41
194 195 2.134346 GCTATCTGCTGAAGCTACTGC 58.866 52.381 15.43 0.00 42.66 4.40
195 196 3.122297 GTGCTATCTGCTGAAGCTACTG 58.878 50.000 20.02 0.00 43.37 2.74
196 197 2.762887 TGTGCTATCTGCTGAAGCTACT 59.237 45.455 20.02 0.10 43.37 2.57
199 200 1.406614 GGTGTGCTATCTGCTGAAGCT 60.407 52.381 20.02 0.00 43.37 3.74
218 219 6.648879 TTGGAAAATTGACTTCTGTTAGGG 57.351 37.500 0.00 0.00 0.00 3.53
220 221 7.814587 GGGAATTGGAAAATTGACTTCTGTTAG 59.185 37.037 0.00 0.00 0.00 2.34
224 225 6.161381 CAGGGAATTGGAAAATTGACTTCTG 58.839 40.000 0.00 0.00 0.00 3.02
237 238 5.363580 GGATTAGAAAATGCAGGGAATTGGA 59.636 40.000 0.00 0.00 33.86 3.53
267 268 1.154654 GTACGTCGCACAAGCTTGC 60.155 57.895 26.27 13.51 39.10 4.01
268 269 0.161658 CTGTACGTCGCACAAGCTTG 59.838 55.000 24.84 24.84 39.10 4.01
403 1406 1.669795 GGCTTCGGTTGCATCTTTTGG 60.670 52.381 0.00 0.00 0.00 3.28
820 1824 3.419580 ATCGGGGGCATGAAGGCA 61.420 61.111 0.00 0.00 46.44 4.75
838 1842 2.269241 CGGGAGAAAGGACAGGCC 59.731 66.667 0.00 0.00 0.00 5.19
1436 2440 0.179048 TGTGTTCCAGCTCACCACAG 60.179 55.000 1.22 0.00 32.64 3.66
1884 2888 1.210967 TCCTCCCAACGTTGTGTTTCT 59.789 47.619 25.63 0.00 39.29 2.52
2067 3071 7.012989 TCTCTTGATAAGATTGGTCAATGCATG 59.987 37.037 0.00 0.00 36.82 4.06
2130 3134 5.636837 TGAAGAAACACGGAAAACAAGAAG 58.363 37.500 0.00 0.00 0.00 2.85
2131 3135 5.630661 TGAAGAAACACGGAAAACAAGAA 57.369 34.783 0.00 0.00 0.00 2.52
2132 3136 5.048643 TGTTGAAGAAACACGGAAAACAAGA 60.049 36.000 0.00 0.00 43.96 3.02
2133 3137 5.157781 TGTTGAAGAAACACGGAAAACAAG 58.842 37.500 0.00 0.00 43.96 3.16
2134 3138 5.122512 TGTTGAAGAAACACGGAAAACAA 57.877 34.783 0.00 0.00 43.96 2.83
2135 3139 4.768130 TGTTGAAGAAACACGGAAAACA 57.232 36.364 0.00 0.00 43.96 2.83
2146 3150 9.410556 GCAAAGCTATCTTAAATGTTGAAGAAA 57.589 29.630 0.00 0.00 35.40 2.52
2147 3151 8.796475 AGCAAAGCTATCTTAAATGTTGAAGAA 58.204 29.630 0.00 0.00 36.99 2.52
2148 3152 8.340618 AGCAAAGCTATCTTAAATGTTGAAGA 57.659 30.769 0.00 0.00 36.99 2.87
2149 3153 8.239314 TGAGCAAAGCTATCTTAAATGTTGAAG 58.761 33.333 0.00 0.00 39.88 3.02
2150 3154 8.023128 GTGAGCAAAGCTATCTTAAATGTTGAA 58.977 33.333 0.00 0.00 39.88 2.69
2151 3155 7.391554 AGTGAGCAAAGCTATCTTAAATGTTGA 59.608 33.333 0.00 0.00 39.88 3.18
2152 3156 7.533426 AGTGAGCAAAGCTATCTTAAATGTTG 58.467 34.615 0.00 0.00 39.88 3.33
2153 3157 7.693969 AGTGAGCAAAGCTATCTTAAATGTT 57.306 32.000 0.00 0.00 39.88 2.71
2154 3158 8.970859 ATAGTGAGCAAAGCTATCTTAAATGT 57.029 30.769 0.00 0.00 39.88 2.71
2160 3164 9.618890 TGAAATAATAGTGAGCAAAGCTATCTT 57.381 29.630 0.00 0.00 39.88 2.40
2161 3165 9.790344 ATGAAATAATAGTGAGCAAAGCTATCT 57.210 29.630 0.00 0.00 39.88 1.98
2240 3290 4.530553 TGAAATCAGGTGTCTAGTGCCTAA 59.469 41.667 3.05 0.00 0.00 2.69
2308 3358 7.814264 ATGTAGGATCTCCAATTTTTAGCAG 57.186 36.000 0.00 0.00 38.89 4.24
2325 3375 5.164620 TCATTCTTGTCAGCAATGTAGGA 57.835 39.130 5.97 0.00 33.65 2.94
2345 3398 4.943705 GGAGGCATTACTCACATTTCTTCA 59.056 41.667 0.00 0.00 39.27 3.02
2351 3404 3.370953 GGACAGGAGGCATTACTCACATT 60.371 47.826 0.00 0.00 39.27 2.71
2436 3489 2.260844 ACCCATCATTATCACCGCTG 57.739 50.000 0.00 0.00 0.00 5.18
2512 3565 4.217510 TCAGAATATGCCCCATGAAAAGG 58.782 43.478 0.00 0.00 0.00 3.11
2587 3640 8.349983 ACAAAAGAAACCAATATACACTGTGTC 58.650 33.333 17.99 0.00 0.00 3.67
2627 3681 6.017852 GCTAGTTAGACACTTTGAAAAGCAGT 60.018 38.462 2.69 2.46 39.63 4.40
2656 3710 9.715119 TGCTCTAAGGATGGCTAATCTATTATA 57.285 33.333 0.00 0.00 35.43 0.98
2657 3711 8.615360 TGCTCTAAGGATGGCTAATCTATTAT 57.385 34.615 0.00 0.00 35.43 1.28
2658 3712 8.314751 GTTGCTCTAAGGATGGCTAATCTATTA 58.685 37.037 0.00 0.00 35.43 0.98
2659 3713 6.942163 TGCTCTAAGGATGGCTAATCTATT 57.058 37.500 0.00 0.00 35.43 1.73
2660 3714 6.500049 AGTTGCTCTAAGGATGGCTAATCTAT 59.500 38.462 0.00 0.00 35.43 1.98
2661 3715 5.841237 AGTTGCTCTAAGGATGGCTAATCTA 59.159 40.000 0.00 0.00 35.43 1.98
2662 3716 4.657969 AGTTGCTCTAAGGATGGCTAATCT 59.342 41.667 0.00 0.00 35.43 2.40
2663 3717 4.967036 AGTTGCTCTAAGGATGGCTAATC 58.033 43.478 0.00 0.00 34.19 1.75
2664 3718 4.202409 GGAGTTGCTCTAAGGATGGCTAAT 60.202 45.833 0.00 0.00 0.00 1.73
2665 3719 3.134804 GGAGTTGCTCTAAGGATGGCTAA 59.865 47.826 0.00 0.00 0.00 3.09
2666 3720 2.700897 GGAGTTGCTCTAAGGATGGCTA 59.299 50.000 0.00 0.00 0.00 3.93
2667 3721 1.488393 GGAGTTGCTCTAAGGATGGCT 59.512 52.381 0.00 0.00 0.00 4.75
2668 3722 1.210478 TGGAGTTGCTCTAAGGATGGC 59.790 52.381 0.00 0.00 0.00 4.40
2669 3723 3.274288 GTTGGAGTTGCTCTAAGGATGG 58.726 50.000 0.00 0.00 31.92 3.51
2670 3724 3.274288 GGTTGGAGTTGCTCTAAGGATG 58.726 50.000 0.00 0.00 31.92 3.51
2671 3725 2.912956 TGGTTGGAGTTGCTCTAAGGAT 59.087 45.455 0.00 0.00 31.92 3.24
2672 3726 2.303022 CTGGTTGGAGTTGCTCTAAGGA 59.697 50.000 0.00 0.00 31.92 3.36
2673 3727 2.616510 CCTGGTTGGAGTTGCTCTAAGG 60.617 54.545 0.00 0.00 38.35 2.69
2674 3728 2.704572 CCTGGTTGGAGTTGCTCTAAG 58.295 52.381 0.00 0.00 38.35 2.18
2675 3729 1.271379 GCCTGGTTGGAGTTGCTCTAA 60.271 52.381 0.00 0.00 38.35 2.10
2676 3730 0.324943 GCCTGGTTGGAGTTGCTCTA 59.675 55.000 0.00 0.00 38.35 2.43
2677 3731 1.073897 GCCTGGTTGGAGTTGCTCT 59.926 57.895 0.00 0.00 38.35 4.09
2678 3732 2.328099 CGCCTGGTTGGAGTTGCTC 61.328 63.158 0.00 0.00 38.35 4.26
2679 3733 2.281761 CGCCTGGTTGGAGTTGCT 60.282 61.111 0.00 0.00 38.35 3.91
2680 3734 2.281484 TCGCCTGGTTGGAGTTGC 60.281 61.111 0.00 0.00 38.35 4.17
2681 3735 1.966451 GGTCGCCTGGTTGGAGTTG 60.966 63.158 0.00 0.00 38.35 3.16
2682 3736 2.430367 GGTCGCCTGGTTGGAGTT 59.570 61.111 0.00 0.00 38.35 3.01
2683 3737 3.637273 GGGTCGCCTGGTTGGAGT 61.637 66.667 0.00 0.00 38.35 3.85
2684 3738 2.484287 AATGGGTCGCCTGGTTGGAG 62.484 60.000 0.00 0.00 38.35 3.86
2685 3739 2.075355 AAATGGGTCGCCTGGTTGGA 62.075 55.000 0.00 0.00 38.35 3.53
2686 3740 1.595093 GAAATGGGTCGCCTGGTTGG 61.595 60.000 0.00 0.00 39.35 3.77
2687 3741 1.883021 GAAATGGGTCGCCTGGTTG 59.117 57.895 0.00 0.00 0.00 3.77
2688 3742 1.674322 CGAAATGGGTCGCCTGGTT 60.674 57.895 0.00 0.00 33.66 3.67
2689 3743 2.046314 CGAAATGGGTCGCCTGGT 60.046 61.111 0.00 0.00 33.66 4.00
2690 3744 2.046314 ACGAAATGGGTCGCCTGG 60.046 61.111 0.00 0.00 45.00 4.45
2691 3745 2.106683 GGACGAAATGGGTCGCCTG 61.107 63.158 0.00 0.00 45.00 4.85
2692 3746 2.267961 GGACGAAATGGGTCGCCT 59.732 61.111 0.00 0.00 45.00 5.52
2693 3747 3.192922 CGGACGAAATGGGTCGCC 61.193 66.667 0.00 0.00 45.00 5.54
2694 3748 3.861263 GCGGACGAAATGGGTCGC 61.861 66.667 0.00 0.00 45.00 5.19
2695 3749 3.192922 GGCGGACGAAATGGGTCG 61.193 66.667 0.00 0.00 46.54 4.79
2696 3750 2.822701 GGGCGGACGAAATGGGTC 60.823 66.667 0.00 0.00 0.00 4.46
2697 3751 3.642503 TGGGCGGACGAAATGGGT 61.643 61.111 0.00 0.00 0.00 4.51
2698 3752 3.131478 GTGGGCGGACGAAATGGG 61.131 66.667 0.00 0.00 0.00 4.00
2699 3753 3.496131 CGTGGGCGGACGAAATGG 61.496 66.667 1.76 0.00 42.10 3.16
2700 3754 2.736682 GACGTGGGCGGACGAAATG 61.737 63.158 13.77 0.00 42.10 2.32
2701 3755 2.433664 GACGTGGGCGGACGAAAT 60.434 61.111 13.77 0.00 42.10 2.17
2702 3756 4.668118 GGACGTGGGCGGACGAAA 62.668 66.667 13.77 0.00 42.10 3.46
2706 3760 4.974989 AAACGGACGTGGGCGGAC 62.975 66.667 0.00 0.00 43.45 4.79
2707 3761 4.973055 CAAACGGACGTGGGCGGA 62.973 66.667 0.00 0.00 43.45 5.54
2712 3766 3.039588 CGACCCAAACGGACGTGG 61.040 66.667 0.00 0.00 43.65 4.94
2716 3770 3.723348 GCAGCGACCCAAACGGAC 61.723 66.667 0.00 0.00 34.64 4.79
2720 3774 3.723348 GTCCGCAGCGACCCAAAC 61.723 66.667 18.75 0.55 0.00 2.93
2721 3775 3.758973 TTGTCCGCAGCGACCCAAA 62.759 57.895 18.75 0.07 31.35 3.28
2722 3776 3.758973 TTTGTCCGCAGCGACCCAA 62.759 57.895 18.75 12.69 31.35 4.12
2723 3777 3.758973 TTTTGTCCGCAGCGACCCA 62.759 57.895 18.75 6.65 31.35 4.51
2724 3778 2.548295 TTTTTGTCCGCAGCGACCC 61.548 57.895 18.75 3.72 31.35 4.46
2725 3779 1.370051 GTTTTTGTCCGCAGCGACC 60.370 57.895 18.75 6.54 31.35 4.79
2726 3780 1.721133 CGTTTTTGTCCGCAGCGAC 60.721 57.895 18.75 13.13 0.00 5.19
2727 3781 1.225376 ATCGTTTTTGTCCGCAGCGA 61.225 50.000 18.75 0.00 0.00 4.93
2728 3782 1.059657 CATCGTTTTTGTCCGCAGCG 61.060 55.000 8.18 8.18 0.00 5.18
2729 3783 0.729140 CCATCGTTTTTGTCCGCAGC 60.729 55.000 0.00 0.00 0.00 5.25
2730 3784 0.729140 GCCATCGTTTTTGTCCGCAG 60.729 55.000 0.00 0.00 0.00 5.18
2731 3785 1.284408 GCCATCGTTTTTGTCCGCA 59.716 52.632 0.00 0.00 0.00 5.69
2732 3786 1.443702 GGCCATCGTTTTTGTCCGC 60.444 57.895 0.00 0.00 0.00 5.54
2733 3787 1.211709 GGGCCATCGTTTTTGTCCG 59.788 57.895 4.39 0.00 0.00 4.79
2734 3788 0.676736 TTGGGCCATCGTTTTTGTCC 59.323 50.000 7.26 0.00 0.00 4.02
2735 3789 1.778334 GTTGGGCCATCGTTTTTGTC 58.222 50.000 7.26 0.00 0.00 3.18
2736 3790 0.031449 CGTTGGGCCATCGTTTTTGT 59.969 50.000 25.10 0.00 0.00 2.83
2737 3791 1.281566 GCGTTGGGCCATCGTTTTTG 61.282 55.000 31.03 9.19 34.80 2.44
2738 3792 1.006688 GCGTTGGGCCATCGTTTTT 60.007 52.632 31.03 0.00 34.80 1.94
2739 3793 2.648454 GCGTTGGGCCATCGTTTT 59.352 55.556 31.03 0.00 34.80 2.43
2740 3794 3.732892 CGCGTTGGGCCATCGTTT 61.733 61.111 31.03 0.00 38.94 3.60
2750 3804 3.168237 GAATGGATCGGCGCGTTGG 62.168 63.158 8.43 0.00 0.00 3.77
2751 3805 2.324477 GAATGGATCGGCGCGTTG 59.676 61.111 8.43 0.00 0.00 4.10
2752 3806 2.895372 GGAATGGATCGGCGCGTT 60.895 61.111 8.43 0.00 0.00 4.84
2753 3807 4.910585 GGGAATGGATCGGCGCGT 62.911 66.667 8.43 0.00 0.00 6.01
2754 3808 2.779951 TATGGGAATGGATCGGCGCG 62.780 60.000 0.00 0.00 0.00 6.86
2755 3809 0.605319 TTATGGGAATGGATCGGCGC 60.605 55.000 0.00 0.00 0.00 6.53
2756 3810 2.009774 GATTATGGGAATGGATCGGCG 58.990 52.381 0.00 0.00 0.00 6.46
2757 3811 2.369394 GGATTATGGGAATGGATCGGC 58.631 52.381 0.00 0.00 0.00 5.54
2758 3812 2.027192 ACGGATTATGGGAATGGATCGG 60.027 50.000 0.00 0.00 0.00 4.18
2759 3813 3.262420 GACGGATTATGGGAATGGATCG 58.738 50.000 0.00 0.00 0.00 3.69
2760 3814 3.610911 GGACGGATTATGGGAATGGATC 58.389 50.000 0.00 0.00 0.00 3.36
2761 3815 2.027192 CGGACGGATTATGGGAATGGAT 60.027 50.000 0.00 0.00 0.00 3.41
2762 3816 1.346395 CGGACGGATTATGGGAATGGA 59.654 52.381 0.00 0.00 0.00 3.41
2763 3817 1.808411 CGGACGGATTATGGGAATGG 58.192 55.000 0.00 0.00 0.00 3.16
2764 3818 1.156736 GCGGACGGATTATGGGAATG 58.843 55.000 0.00 0.00 0.00 2.67
2765 3819 1.056660 AGCGGACGGATTATGGGAAT 58.943 50.000 0.00 0.00 0.00 3.01
2766 3820 0.834612 AAGCGGACGGATTATGGGAA 59.165 50.000 0.00 0.00 0.00 3.97
2767 3821 0.391597 GAAGCGGACGGATTATGGGA 59.608 55.000 0.00 0.00 0.00 4.37
2768 3822 0.944311 CGAAGCGGACGGATTATGGG 60.944 60.000 0.00 0.00 0.00 4.00
2769 3823 2.517598 CGAAGCGGACGGATTATGG 58.482 57.895 0.00 0.00 0.00 2.74
2789 3843 3.376914 GAAATGGGTCCGCGCGAAC 62.377 63.158 34.63 24.27 0.00 3.95
2790 3844 3.122323 GAAATGGGTCCGCGCGAA 61.122 61.111 34.63 8.78 0.00 4.70
2791 3845 4.077184 AGAAATGGGTCCGCGCGA 62.077 61.111 34.63 15.16 0.00 5.87
2792 3846 3.864686 CAGAAATGGGTCCGCGCG 61.865 66.667 25.67 25.67 0.00 6.86
2793 3847 4.179579 GCAGAAATGGGTCCGCGC 62.180 66.667 0.00 0.00 0.00 6.86
2794 3848 3.508840 GGCAGAAATGGGTCCGCG 61.509 66.667 0.00 0.00 0.00 6.46
2795 3849 3.140814 GGGCAGAAATGGGTCCGC 61.141 66.667 0.00 0.00 0.00 5.54
2796 3850 2.440247 GGGGCAGAAATGGGTCCG 60.440 66.667 0.00 0.00 0.00 4.79
2797 3851 0.544120 TTTGGGGCAGAAATGGGTCC 60.544 55.000 0.00 0.00 0.00 4.46
2798 3852 1.571955 ATTTGGGGCAGAAATGGGTC 58.428 50.000 0.00 0.00 0.00 4.46
2799 3853 2.040145 CAAATTTGGGGCAGAAATGGGT 59.960 45.455 10.49 0.00 0.00 4.51
2800 3854 2.713877 CAAATTTGGGGCAGAAATGGG 58.286 47.619 10.49 0.00 0.00 4.00
2801 3855 2.086094 GCAAATTTGGGGCAGAAATGG 58.914 47.619 19.47 0.00 0.00 3.16
2802 3856 1.733360 CGCAAATTTGGGGCAGAAATG 59.267 47.619 23.66 0.00 37.46 2.32
2803 3857 1.945355 GCGCAAATTTGGGGCAGAAAT 60.945 47.619 29.66 0.00 43.01 2.17
2804 3858 0.602372 GCGCAAATTTGGGGCAGAAA 60.602 50.000 29.66 0.00 43.01 2.52
2805 3859 1.005156 GCGCAAATTTGGGGCAGAA 60.005 52.632 29.66 0.00 43.01 3.02
2806 3860 2.656055 GCGCAAATTTGGGGCAGA 59.344 55.556 29.66 0.00 43.01 4.26
2810 3864 0.034616 TTTCAGGCGCAAATTTGGGG 59.965 50.000 29.66 17.14 40.98 4.96
2811 3865 1.733360 CATTTCAGGCGCAAATTTGGG 59.267 47.619 26.18 26.18 43.22 4.12
2812 3866 1.129064 GCATTTCAGGCGCAAATTTGG 59.871 47.619 19.47 10.66 0.00 3.28
2813 3867 2.513964 GCATTTCAGGCGCAAATTTG 57.486 45.000 14.03 14.03 0.00 2.32
2822 3876 2.480555 CACCGACGCATTTCAGGC 59.519 61.111 0.00 0.00 0.00 4.85
2823 3877 2.244436 CTGCACCGACGCATTTCAGG 62.244 60.000 0.00 0.00 42.06 3.86
2824 3878 1.133253 CTGCACCGACGCATTTCAG 59.867 57.895 0.00 0.00 42.06 3.02
2825 3879 1.301322 TCTGCACCGACGCATTTCA 60.301 52.632 0.00 0.00 42.06 2.69
2826 3880 1.132640 GTCTGCACCGACGCATTTC 59.867 57.895 0.00 0.00 42.06 2.17
2827 3881 3.253955 GTCTGCACCGACGCATTT 58.746 55.556 0.00 0.00 42.06 2.32
2833 3887 3.470567 CTTCGCGTCTGCACCGAC 61.471 66.667 5.77 0.73 42.97 4.79
2899 3953 3.989787 CTTGGGTTGTTGGCCGGC 61.990 66.667 21.18 21.18 0.00 6.13
2900 3954 3.989787 GCTTGGGTTGTTGGCCGG 61.990 66.667 0.00 0.00 0.00 6.13
2901 3955 4.341502 CGCTTGGGTTGTTGGCCG 62.342 66.667 0.00 0.00 0.00 6.13
2902 3956 3.989787 CCGCTTGGGTTGTTGGCC 61.990 66.667 0.00 0.00 0.00 5.36
2911 3965 2.286772 GCGTTAATTATGACCGCTTGGG 60.287 50.000 10.30 0.00 41.06 4.12
2912 3966 2.598907 CGCGTTAATTATGACCGCTTGG 60.599 50.000 0.00 0.00 42.01 3.61
2913 3967 2.598907 CCGCGTTAATTATGACCGCTTG 60.599 50.000 4.92 5.33 42.01 4.01
2914 3968 1.595794 CCGCGTTAATTATGACCGCTT 59.404 47.619 4.92 0.00 42.01 4.68
2915 3969 1.214367 CCGCGTTAATTATGACCGCT 58.786 50.000 4.92 0.00 42.01 5.52
2916 3970 0.383860 GCCGCGTTAATTATGACCGC 60.384 55.000 4.92 8.44 40.87 5.68
2917 3971 0.233848 GGCCGCGTTAATTATGACCG 59.766 55.000 4.92 0.00 0.00 4.79
2918 3972 1.003223 GTGGCCGCGTTAATTATGACC 60.003 52.381 4.92 0.00 0.00 4.02
2919 3973 1.003223 GGTGGCCGCGTTAATTATGAC 60.003 52.381 10.86 0.00 0.00 3.06
2920 3974 1.134340 AGGTGGCCGCGTTAATTATGA 60.134 47.619 10.86 0.00 0.00 2.15
2921 3975 1.305201 AGGTGGCCGCGTTAATTATG 58.695 50.000 10.86 0.00 0.00 1.90
2922 3976 2.486918 GTAGGTGGCCGCGTTAATTAT 58.513 47.619 17.88 0.00 0.00 1.28
2923 3977 1.473080 GGTAGGTGGCCGCGTTAATTA 60.473 52.381 17.88 0.00 0.00 1.40
2924 3978 0.745486 GGTAGGTGGCCGCGTTAATT 60.745 55.000 17.88 0.00 0.00 1.40
2925 3979 1.153309 GGTAGGTGGCCGCGTTAAT 60.153 57.895 17.88 0.00 0.00 1.40
2926 3980 2.265424 GGTAGGTGGCCGCGTTAA 59.735 61.111 17.88 0.00 0.00 2.01
2927 3981 4.132441 CGGTAGGTGGCCGCGTTA 62.132 66.667 17.88 5.92 42.82 3.18
2949 4003 3.663176 CACACACTGCCAAGCGGG 61.663 66.667 0.00 0.00 39.57 6.13
2950 4004 3.663176 CCACACACTGCCAAGCGG 61.663 66.667 0.00 0.00 41.29 5.52
2951 4005 2.121564 CTTCCACACACTGCCAAGCG 62.122 60.000 0.00 0.00 0.00 4.68
2952 4006 1.656441 CTTCCACACACTGCCAAGC 59.344 57.895 0.00 0.00 0.00 4.01
2953 4007 1.174712 CCCTTCCACACACTGCCAAG 61.175 60.000 0.00 0.00 0.00 3.61
2954 4008 1.152777 CCCTTCCACACACTGCCAA 60.153 57.895 0.00 0.00 0.00 4.52
2955 4009 2.515398 CCCTTCCACACACTGCCA 59.485 61.111 0.00 0.00 0.00 4.92
2956 4010 2.985847 GCCCTTCCACACACTGCC 60.986 66.667 0.00 0.00 0.00 4.85
2957 4011 2.985847 GGCCCTTCCACACACTGC 60.986 66.667 0.00 0.00 34.01 4.40
2958 4012 2.669569 CGGCCCTTCCACACACTG 60.670 66.667 0.00 0.00 34.01 3.66
2959 4013 4.643387 GCGGCCCTTCCACACACT 62.643 66.667 0.00 0.00 34.01 3.55
2974 4028 1.669760 TAAACAGGAAGGGCACGCG 60.670 57.895 3.53 3.53 0.00 6.01
2975 4029 4.390048 TAAACAGGAAGGGCACGC 57.610 55.556 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.