>input_sequence_63621
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---ATGCCCCAGCAGAGAAAGTGCACCATCGCCTACAACACAATCATCACTGCTTATGTGAAAGCCAAGGATATTTTCAC
CGCACGCCATCTGTTTGATGAAATGCAGCGGTTCAAGCGCTCCAGGAGAAGCATGGTTTCCTGGAATGCTATGATCGCAG
GGTGTACTTGGTGTGGGAGGGACGACATGGCAGTGCGGTATTTCCAAGACATGGTGAGGGAGGGCAAGGTGGCGCCAGAT
GATGGGACCCTTGCCGTGGTGCTGCCTGCTTGTGGGAGGACGGGGAATGCTGCTGCCGGGAGGTGGGCGCACGAGTATGC
ATGCAAGATGGGTATCTTAGACAGCTCGGTGCATGTTGCTAATGCGGTGGTAGATATGTATTGCAAGTGTGGCGATGTGA
GCAGCGCAAGAGAGGTGTTCGAAGGGATGCAACAGCGGACTGTGGTGAGCTGGAACACAATGATCTCTGGATTTTCATTG
AATGGGCAAGGGATTAAGGGGATTGAGCTGTTCCGGCAGATGGTGAGGCCCGGAGGGGAGCCTAATTCAGTGACTTTCCT
GGGGGTGCTTGGTTGCTGTGCCCATGCCGGGGCAGTAGATACTGGGCAGGTGATCTTCCAGATTATGCAGTCAGAGCATG
GGATTGAGCCGGGAATTGAACATTATGGATGTATGGTAGATTTACTTGGAAGGTCCGGCCTTCTCGAAGAGGCACATGCG
CTGATTCAAGGGATGCCAATGAGCCCTAATTCTGCAATATGGGGATCACTTCTAAGCGCCTGCCGTGCCCATGCTGGGCT
CGGCATTGCCGAGGTGGCTCTCAAAGAGCTTATTAGTCTGGAACCTTGGAATTCAGGGAACTATATGCTGTTGGCCAATC
TTTATGCAGAAACACAACGTTGGGAGGAGGCAGGTGATGTGAGGAAACTGATGAGGAGGATGAGTGTGCAAAAGGCACCA
GGGCAGAGCCTAATTGAAGAACCAAGTTCAAGTTGA--------------------------------------------
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>chr4A_1_TraesCS4A01G170600
AGAACTATACCCTACTTGATGCGGGTCCACAACCTCACAACCTTCCACGCGATATGATAGCAATCGTCAAAGATTGCAGT
CCCTAGACCTACAAATTGTTCTCCTTCATTCATCGTACTGATGAACTATTATCTGAATTGACAGTAATCTAGTTGCAACC
GATTGTTTGTGCTAGGCAAAAGCCATATTTCAATGCAGTAGCTTCAGCAGATAGCACACCCTAACAGAAGTCAATTTTCC
AATTCCCTGCATTTTCTAATCCTGCATGCAAGCTTGTGCGACGTACAGGCCAAATATGGGAGTTGGCCGAAGAGCCTGCC
TGATTTAGCTTGCGCGCACGGCCCATTTCATATCA---------------------------------------------
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----------------------------------------------------------------------------CCCC
GCGCATTCTCAAATCCAATCGAAGCCATTCT-CATAAAAAACAAACCAAAAGATGCAACCGAAGCCGAATTGTCTCGCGC
TCTTGCCGATGCCGTCCACCGCCGCCGCCGGCGAGCCCTCCCCGTCGTTGCCCCACGCCGTGACCACCCCCGACGGGTGG
CACCCCCGCACAGCGGAGCGCCGCCTGCTCCATCTCCTGCATCACTCCTCCCGCGCCCGGCGACGCCCGCTCGAGCTCCT
CGCCTT-GCCGTCCGCCATTGCCTGCATTCCTCCCCGTCCTCCCCGCACCACCACTTCCTGGCCGCGCTCCTCCTCCTCT
CCTCCCCTCCGCCGCCGGCTCTCTCTCTCCTGAGCCTCCTCCCTCCTGAACCACCGCCTCCCCTCGCACTCCTCAACGCC
GCCCTCAAGTCGCTGTCCGCCCCCTCTCCGCCCCTCGCGTTCCGCCTCCTATCCTCCCTTCGCTGCCTTCATGCCCCCGA
TGGCCTGTCCTTTCTCCCGCTGCTCGGGTCCACCTCCTCGTTGCCGCTCCTCTCAGCCCTCCATGGCCTCCTCCTCCGCC
TCGGCTTCCTCTCCCACCACGCCATCTCCCTCGGGCTCCTCGGGCCCTATCCTCTGCCCCACGCACGAATCCTGTTCGAC
GAAATGCCCCAGCAGAGAAAGTGCACCATCGCCTACAACACAATCATCACTGCTTATGTGAAAGCCAAGGATATTTTCAC
CGCACGCCATCTGTTTGATGAAATGCAGCGGTTCAAGCGCTCCAGGAGAAGCATGGTTTCCTGGAATGCTATGATCGCAG
GGTGTACTTGGTGTGGGAGGGACGACATGGCAGTGCGGTATTTCCAAGACATGGTGAGGGAGGGCAAGGTGGCGCCAGAT
GATGGGACCCTTGCCGTGGTGCTGCCTGCTTGTGGGAGGACGGGGAATGCTGCTGCCGGGAGGTGGGCGCACGAGTATGC
ATGCAAGATGGGTATCTTAGACAGCTCGGTGCATGTTGCTAATGCGGTGGTAGATATGTATTGCAAGTGTGGCGATGTGA
GCAGCGCAAGAGAGGTGTTCGAAGGGATGCAACAGCGGACTGTGGTGAGCTGGAACACAATGATCTCTGGATTTTCATTG
AATGGGCAAGGGATTAAGGGGATTGAGCTGTTCCGGCAGATGGTGAGGCCCGGAGGGGAGCCTAATTCAGTGACTTTCCT
GGGGGTGCTTGGTTGCTGTGCCCATGCCGGGGCAGTAGATACTGGGCAGGTGATCTTCCAGATTATGCAGTCAGAGCATG
GGATTGAGCCGGGAATTGAACATTATGGATGTATGGTAGATTTACTTGGAAGGTCCGGCCTTCTCGAAGAGGCACATGCG
CTGATTCAAGGGATGCCAATGAGCCCTAATTCTGCAATATGGGGATCACTTCTAAGCGCCTGCCGTGCCCATGCTGGGCT
CGGCATTGCCGAGGTGGCTCTCAAAGAGCTTATTAGTCTGGAACCTTGGAATTCAGGGAACTATATGCTGTTGGCCAATC
TTTATGCAGAAACACAACGTTGGGAGGAGGCAGGTGATGTGAGGAAACTGATGAGGAGGATGAGTGTGCAAAAGGCACCA
GGGCAGAGCCTAATTGAAGAACCAAGTTCAAGTTGACAAATGCATGCTCGCATTGTGAGTTAACTCTGGAAATACTCCTA
CAACAGAGAGGGGAAAACTGCAAAGTGGACCATGCATTGACCAATCTTATCAAGAGATCACATAGTGGTATTACAGGTAA
TCACTTCAACTGTCTTCTTGTTTTCCGTGTTTCTTCAACATTTAAGATAGCTTTGCTCACT-------------------
---------------------------ATTATTTCATATAGACTTATACCCAATATGGAATTCGTTTTTATGGTCAGTTC
AAGAGCAATTTAGGCACTAGACACCTGATTTCATTCGATACATATGTGTTATTCATGTCCTGCTGTGAATAAATGTCCTG
CTAAAAATTGGAGATCCTACA---TTGCTGACAAGAATGAAGAAATGTGAGTAATGCCTCCTGTCCTGGAGACTGGTTCA
CCATAGTTATTCTATATTTGAAATAGTATACATGTAGTTTGCAATTATCAGCGGTGATAATGATGGGTAGTAGTAGTATA
TCTATTTAAATTTATATTCTGAACATTTTGTAAGGTGAAATCACCCTTTTCATGGGGCATATTCTGATTACTTTTACCAA
ATGTTATATTAAGCCATGTATCAATATTTTTTTTGAATAGACACAGTGTATATTGGTTTCTTTT-GTTTATTTAAGTGTT
ACTGCTTTTCAAAGTGTCTAACTAGCCTATATAATAGATTAGCCATCCTTAGAGCAACTCCAACCAGGCGACCCATTTCG
TCCGCCCACGTCCGTTTGGGTCGCTGCGGACAAAAACGATGGCCCAACGCGCCGATCCATTCCCATAATCCGTCCGCTTC
GCGTTCGCGCGGACCCATTTCTGCCCCAAATTTGCGCCTGAAATGCGTCGGTGCAGACGCGAAGCGGATGCGCCGCGCGT
CCCCTCGGTGTCCGCCGCGGCCCCACATGGCGGCCGGCCAACAACCCAAGCGGTCATAATTAACGCGGCCACCTACCGAC
GGCCCGCTTGGCAGTGTGTGGAAGGGCCGCGTGCCCTTCCTGTTTA
>chr4D_198
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-------------------------------------GTCGCTTCAGCAGATAGCACATCGTAATAGAAGTCAATTTCCC
AATTCCTTGCATTTTCTAATCCTGCATCTAAGCTTGTGCGACGTACAGGCCAAATATGGAAGTAGGCCGAAGAGCCTGCC
TGATTTAGCTTGCACGCACGGCCCATTTAAG-----------------------------------------------AT
CACTCTCATCGTTCAGCAGATGCGCCCGGGACCTCCAATGTGACGCGCTCTGCGTCTAGTTGCTGTATATGCGGTCACGG
GGATTCGAACACATGATCGACTGCCATACACGACGTGTTCCTACTAGCTGAGCTAGCAGTTATAGCTAATCAAATAGTAG
CATCAAACATAAAAAAACCAAACACGGTGCACAGATCCGAATTAGTTTAGGAATTTTGAAAGCAATATTTTTTGAAAAAA
CGGAATGTTCTGTGAAATGCAAACACTTTCCAAATTGATGAACAAATTTTCTAAAAGCTATAACATTTTCGAAAAACAAG
AGCATTTTTTGAAAATCATGAACAGTTTTTTTGAAATGGGAACATTTTTCCAAATTCCAAAACAAAATTTGGAAACGTGA
ACATATTTTGAAATTCATGAACAATTTTTTTAAACTTGTGAACAATTTTTGACACTAGAACATTTTTTGAAACTCCTGAA
AAATTGAAAACATGAACACATTTTTTTAAAACAGGAATATTTATGAAAAAATGTAAAAAAATCAATTTTTTTTGTAAAAC
AAAAACAGTTTTTGAAATGCCTGAACAATTTTTTAAAACTGTTTCGAATTTATGAAAAAAATTAAACACGATTTTGTTTT
TGAAATTTTAAACGTTTTGTAGAAAATGAACAAATTTTGAACTTTCCGAACAACTTTTGAAAAATGAACAGAAAACAGAA
AAAGGGAAAAGAAAGAAGAAAAAGAACAGAAAAACGGAAAAGGGAAAAATAAAAACGAAAAAACCCCAAGAAGAAACAGG
AAAACCGGTCAAAAAGAAAAAAAGGTTCAGGGAACCTTCTAGAAGGACCGGCTGGCTAGTTCTGATATAATGGGCCGGCC
CATTGCTAGCGATTTATCGGCTGTGCGTGCGTCGACAGCTTGACGCAACGAGCGGCGCATAGGGTTTTCTGATGCGCCCC
GCGCATTCTCAAATCCAATCGAAGCCATTCTTCATAAAAAACAAAACAAAAGATGCAACGGAAGCCGAATTGTCTCGCGC
TCTTGCCGATGCCGTCCACCGCCGCCGCAAGCGAGCCCTCCCCGTCGTTCTCCCACGCCGTGACCACCCCCGACGGGTGG
CACCCCCGCACAGCGGAGCGCCGCCTGCTCCATCTCCTGCACCATTCCTCCCGCGCCCGGCGACGCCCGCTCGAGCTCCT
CGCCTTCGCCGTCCGCCATTGCCTGCATTCCTCCCCGCCCTCCCCGCACCACCACTTCCTCGCCGCGCTCCTCCTCCTCT
CCTCCCCTCCGCCGCCGTCTCTCTCTCTCCTGAGCCTCCTCCCTCCCGAACCCCCGCCTCCCCTCGCACTCCTCAACGCC
GCCCTCAAGTCCCTTTCCGCCCCCTCTCCGCCCCTCGCGTTCCGCCTCCTATCCTCCCTTCGCCGCCTCCATGCCCCCGA
TCGCCTGTCCTTTCTCCCGCTGCTTGGGTCCACCTCCTCGTTGCCGCTCCTCTCAGCCCTCCATGGCCTCCTCCTCCGCC
TCGGCTTCCTCTCCCACCACGCCATCTCCCTCGCGCTCCTCAGGCCCTATCCTCTGCCCCACGCACGAATCCTGTTCGAC
GAAATGCCCCAGCAGAGAATGTGCACCATCGCCTACAACACACTCATCACCGCTTATGTGAAAGCCAAGGATATTTTCAC
CGCACGCCATCTGTTTGATGAAATGCAGCGGTTCAAGCGCTCCAGGAGAAGCATGGTTTCCTGGAATGCTATGATCGCAG
GGTGTACTTGTTGTGGGAGGGACGACATGGCAGTGCGGTATTTCCAAGAGATGGTGAGGGAGGGCAAGGTGGCGCCAGAT
GATGGGACCCTTGCCGCGGTGCTGCCTGCTTGTGGGAGGACGGGGAATGCTGGTGCCGGGAGGTGGGCGCACGAGTATGC
ATGCAAGATGGGTATCTTAGACAGCTCGGTGCATGTTGCTAATGCGGTGGTAGATATGTATTGCAAGTGTGGCGATGTGA
GCAGCGCAAGAGAGGTGTTCGAAGGGATGCAACAGCGGAGTGTGGTGAGCTGGAACACAATGATCTCTGGATTTTCATTG
AATGGGCAAGGGATTAAGGGGGTTGAGCTGTTCCGGCAGATGGTGAGGTCCGGAGGGGAGCCTAATTCAGTGACTTTCCT
GGGGGTGCTTGGTTGCTGTGCCCATGCTGGGGCAGTAGATACTGGGCAGGTGATCTTCCAGATTATGCAGTCAGAGCATG
GGATTGAGCCGGGAATTGAACATTATGGATGTATGGTAGATTTACTTGGAAGGTCCGGCCTTCTCGAAGAGGCACATGCG
CTGATTCAAGGGATGCCAATGAGCCCTAATTCTGCAATATGGGGATCACTTCTAAGCGCCTGTCATGCCCATGCTGGGCT
CGGCATTGCCGAGGTGGCTCTCAAAGAGCTTATTAGTCTGGAACCTTGGAATTCAGGGAACTATATGCTGTTGGCCAATC
TTTATGCGGAAACACAACGTTGGGAGGAGGCAGGTGATGTGAGGAAACTGATGAGGAGGATGAGTGTGCAAAAGGCACCA
GGGCAGAGCCTAATTGAAGAACCAAGTTCAAGTTGACAAATGCATGCTCGCATTGTGAGTTAACTCTGGAAATACTCCTA
CAACAGAGAGGGGAAAACTGCAAAGTGGACTATGCATTGACCAATCTTATCAAGAGATCACATAGTGGTATTACAGGTAA
TCACTTCAACTGT----------------------------------------------CT-------------------
---------------------------ATTATTTCATATAGACTTATACCCAATATGGAATTCGTTTTTATGGTCAGTTC
AAGAGCAATATAGGCACTAGACACCTGATTTCATTCGATACATATGTGTTATTCATGTCCTGCTGTGAATAAATGTCTTG
CTAAAAATTGGAGACCCTACAATATTGCTGACAAGAACGAAGATATGTGAGTAATGCCTTCTGTCCTGGAGACTGGTTCA
CCATAGTTATTCTATATTTGAAATAGTATACATGTAGTTTGCAATTATAAGCGGTGATAATGGTGGGTAGTAGTAGTACA
TTTTTTAAAATTTATATTCTGAACATTTTGTAAGGTGAAATCACTCTTTTCATGGGGCATATTCTGATTACTTTTAACAA
ATGTTATATTAAGCCATTTATCA--ATTTTTTTTGAATAAACACGGTGTATATTGGTTTATTTTTGTTTATTTAAGTGTT
GCTGCTTTTGAAAGTGTCTAACTAGCC-----------------------------------------------------
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>chr4B_327
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------AGCTTGCGCGCACGGCCCATTTCATATCACCAGAGCCTGCCTGATTTAGCTTGCGCACACGGCCCATTTCGTAT
CACCCTCATCGTTCAGGCG-------------------------------------------------------------
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----------------------------------------------------------------------GATGCGCCCC
GCGGATTCTCAAATCCAATCGAAACCATTCT-CATAA-----AAAAAAAAAGATGCAACCGAGGCCGAATTGTCTCGCGC
TCTTGCCGATGCCATCCACCGCCGCCGCAGGCGAGCCCTCCCCGTCGTTCCCCCACGCCGTGACCACCCCCGACGGGTGG
CACCCCCGCACAGCGGAGCGCCGCCTGCTCCATCTACTGCACCACTCCTCCCGCGCCCGGCGACGCCCGCTCGAGCTCCT
CGCCTTCGCCGTCCGCCATTGCCTGCATTCCTCCCCGCCCTCCACGCAGCACCACTTCCTCGCCGCGCTCCTCCTCCTCT
CCTCCCCTCCGCCGCCGGCTCTCTCTCTCCTGAGCCTCCTCCCTCCTGAACCCCCGCCTCCCCTCGCACTCCTCAACGCC
GCCCTCAAGTCCCTGTCCGCCCCCTCTCCGCCCCTCGCGCTCCGCCTCCTATCCTCCCTTCGCCGCCTCCATGCCCCCGA
TCGCCTGTCCTTTCTCCCGCTGCTCGGGTCCACCTCCTCGTTGCCGCTCCTCTCAGCCCTCCATGGCCTCCTCCTCCGCC
TCGGCTTCCTCTCCCACCACGCCATCTCCCTCGCGCTCCTCCAGCCCTATCCTCTGCCCCACGCACGAATCCTGTTCGAC
GAAATGCCCCTGCAGAGAAAGTGCACCATCGCCTACAACACACTCATCACTGCTTATGTGAAAGCCAAGGATATTTTCAC
CGCACGCCATCTGTTTGATGTAATGCAGCGGTTCAAGCGCTCTAGGAGAAGCATGATTTCCTGGAATGCTATGATCGCAG
GGTGTACTTGGTGTGGGAGGGACGACATGGCAGTGCGGTATTTCCAAGACATGGTGAGGGAGGGCAAGGTAGCGCCAGAT
GATGGGACCCTCGCCGCGGTGCTGCCTGCTTGTGGGAGGACGGGGAATGCTGGTGCCGGGAGGTGGGCGCACGAGTATGC
ATGCAAGATGGGTATCTTAGACAGCTCGGTGCATGTTGCTAATGCGGTGGTAGATATGTATTGCAAGTGTGGCGATGTGA
GCAGCGCAAGAGAGGTGTTCGAAGGGATGCAACAGCGGAGTGTGGTGAGCTGGAACACAATGATCTCTGGACTTTCATTG
AATGGGCAAGGGATTAAGGGGATTGAACTGTTCCGGCAGATGGTGAGGTCCGGAGGGGAGCCTAATTCAGTGACTTTCCT
GGGGTTGCTTGGTTGCTGTGCCCATGCTGGGGCAGTAGATACTGGGCAGGTGATCTTCCAGATTATGCAGTCAGAGCATG
GGATTGAGCCGGGAATTGAACATTATGGATGTATGGTAGATTTACTTGGAAGGTCCGGCCTTCTCAAAGAGGCACATGCG
CTGATTCAAGGGATGCCAATGAGCCCTAATTCTGCAATATGGGGATCACTTCTAAGCGCCTGCCGTGCCCATGCTGGGCT
CGGCATTGCCGAGGTGGCTCTCAAAGAGCTTATTAGTCTGGAACCTTGGAATTCAGGGAACTATATGCTGTTGGCCAATC
TTTATGCGGAAACACAACGTTGGGAGGAGGCAGGTGATGTGAGGAAACTGATGAGGAGGATGACTGTGCAAAAGGCACCA
GGGCAGAGCCTAATTGAAGAACCAAGTTCAAGTTGACAAATGCATGCTCGCATTGTGAGTTAACTCTGGAAATACTCCTA
CAACAGAGAGGGGGATACTGCAAAGTGGACTATGCATTGACCAATCTTATCAAGAGATCACATAGTGGTATTACAGGTAA
TCACTTCAACTGT----------------------------------------------CTTCTTGTTTTCCGTGTTTCT
TCAACATTTAAGGTAGCTTTGCTCACTATTATTTCATATAGACTTATATCCAATATGGAATTTGTT--------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--S------------------S-S---S------------S--
------S--------------------SS------------------------------S---S----------------
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---------------------------------------------S----------------------------------
----------------------------S--------------------S------------------------------
-----------------------------------------S--------------------------------------
-------------------------------------S----------------------S-------------------
----------------------------------------------------S---------------------------
-----------S---------------------------------------------------S----S-----------
-S------------------------------------------------------------------------------
---------------------------------S-------S--------------------------------------
------------------------------------------S-------------------------------------
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----------------S-----------------------------------S---------------------------
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---------------------------------------S----------------------------------------
------------------------------------------------S-------------------------------
---------------------------S----------------------------------------------------
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-------S------------------------------------------------------------------------
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------------------------------S-------------------------------------------------
-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
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---------S-------------------------------------------------------------------S--
--------------S----------------------S-----S---------------S--------------------
------------------------------------------------S-------------S---------------S-
-S-S--S-------------------------------------S-------------------------------S---
-----------------S-----SS--------------S----S--------------S--------------------
S--------S-----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1824
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--------------------------------------------CCTCCTATCCTCCCTTCGCT----------------
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>reverse_3790
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-----------------------------ACAAAAACGATGGCCCAACG-------------------------------
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