Multiple sequence alignment - TraesCS4A01G129100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G129100 chr4A 100.000 3146 0 0 1 3146 166884042 166880897 0.000000e+00 5810.0
1 TraesCS4A01G129100 chr4D 93.648 2330 109 19 1 2315 308820047 308822352 0.000000e+00 3446.0
2 TraesCS4A01G129100 chr4D 88.180 423 24 13 2327 2743 308822422 308822824 6.100000e-132 481.0
3 TraesCS4A01G129100 chr4D 85.586 222 15 12 2743 2947 308830622 308830843 1.900000e-52 217.0
4 TraesCS4A01G129100 chr4D 93.878 49 3 0 2797 2845 308830807 308830855 1.210000e-09 75.0
5 TraesCS4A01G129100 chr4B 92.849 1762 94 22 1 1741 385623049 385624799 0.000000e+00 2527.0
6 TraesCS4A01G129100 chr4B 89.788 1038 48 33 1739 2743 385624830 385625842 0.000000e+00 1277.0
7 TraesCS4A01G129100 chr4B 89.655 145 13 2 2743 2886 385908368 385908511 1.930000e-42 183.0
8 TraesCS4A01G129100 chr4B 90.000 50 4 1 2786 2835 385908498 385908546 2.620000e-06 63.9
9 TraesCS4A01G129100 chr3B 94.030 67 3 1 3079 3144 237642124 237642190 2.000000e-17 100.0
10 TraesCS4A01G129100 chr7A 91.304 69 5 1 3079 3146 693473883 693473951 3.340000e-15 93.5
11 TraesCS4A01G129100 chr5D 89.333 75 7 1 3073 3146 520426125 520426199 3.340000e-15 93.5
12 TraesCS4A01G129100 chr5A 93.651 63 3 1 3085 3146 497961932 497961994 3.340000e-15 93.5
13 TraesCS4A01G129100 chr5A 100.000 28 0 0 180 207 636468205 636468232 6.000000e-03 52.8
14 TraesCS4A01G129100 chr6D 89.855 69 6 1 3079 3146 127389847 127389915 1.550000e-13 87.9
15 TraesCS4A01G129100 chr3D 89.855 69 6 1 3079 3146 94491068 94491136 1.550000e-13 87.9
16 TraesCS4A01G129100 chr3D 100.000 28 0 0 3085 3112 251277239 251277266 6.000000e-03 52.8
17 TraesCS4A01G129100 chr1A 92.063 63 3 2 3085 3146 96467593 96467532 1.550000e-13 87.9
18 TraesCS4A01G129100 chr7B 92.157 51 4 0 3096 3146 120232759 120232809 4.350000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G129100 chr4A 166880897 166884042 3145 True 5810.0 5810 100.0000 1 3146 1 chr4A.!!$R1 3145
1 TraesCS4A01G129100 chr4D 308820047 308822824 2777 False 1963.5 3446 90.9140 1 2743 2 chr4D.!!$F1 2742
2 TraesCS4A01G129100 chr4B 385623049 385625842 2793 False 1902.0 2527 91.3185 1 2743 2 chr4B.!!$F1 2742

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
952 969 0.469917 ACAGCCAACACTACAGCACT 59.53 50.0 0.0 0.0 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2519 2672 0.043396 CAACACACACACACGCGTAG 60.043 55.0 13.44 10.78 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.640201 TGTGTAAGGATGCATTTTCCTAGC 59.360 41.667 7.77 5.03 42.90 3.42
47 48 3.758554 TGCATTTTCCTAGCTGTTCCTTC 59.241 43.478 0.00 0.00 0.00 3.46
51 52 6.517362 GCATTTTCCTAGCTGTTCCTTCTTTT 60.517 38.462 0.00 0.00 0.00 2.27
201 207 9.790389 AAGTTTTTCAAATACACGTTGAACATA 57.210 25.926 0.00 0.00 42.98 2.29
214 220 9.202273 ACACGTTGAACATATTTTTAATTGCAT 57.798 25.926 0.00 0.00 0.00 3.96
215 221 9.463003 CACGTTGAACATATTTTTAATTGCATG 57.537 29.630 0.00 0.00 0.00 4.06
367 374 8.730680 ACATTGTCTGTTTATTACCTGAACATC 58.269 33.333 0.00 0.00 33.38 3.06
374 381 9.398170 CTGTTTATTACCTGAACATCTGTTTTG 57.602 33.333 0.00 0.00 38.56 2.44
379 386 7.517614 TTACCTGAACATCTGTTTTGCATTA 57.482 32.000 0.00 0.00 38.56 1.90
463 473 7.264221 TGTATATTTTGAATGCCCATCAACAC 58.736 34.615 0.00 0.00 36.57 3.32
492 502 3.889196 AGTTGCGCGAACATTCTTTTA 57.111 38.095 12.10 0.00 36.98 1.52
493 503 3.810373 AGTTGCGCGAACATTCTTTTAG 58.190 40.909 12.10 0.00 36.98 1.85
498 508 3.181524 GCGCGAACATTCTTTTAGCACTA 60.182 43.478 12.10 0.00 0.00 2.74
620 631 0.898320 AGGAAGCAGCGTCACATACT 59.102 50.000 10.71 0.00 0.00 2.12
633 644 4.201494 CGTCACATACTGCTAAGTTTCACG 60.201 45.833 0.00 0.00 37.88 4.35
634 645 3.678072 TCACATACTGCTAAGTTTCACGC 59.322 43.478 0.00 0.00 37.88 5.34
635 646 3.000727 ACATACTGCTAAGTTTCACGCC 58.999 45.455 0.00 0.00 37.88 5.68
687 700 4.186926 CAATCCTATCCACACACTCACTG 58.813 47.826 0.00 0.00 0.00 3.66
804 821 0.587768 TCAAACGCATGTGTCAGCAG 59.412 50.000 13.23 1.61 0.00 4.24
894 911 4.261489 CGCCGAGGAGTATATACACACTTT 60.261 45.833 15.18 0.00 0.00 2.66
911 928 2.802816 ACTTTCACAAACGCTAGCTCAG 59.197 45.455 13.93 0.00 0.00 3.35
952 969 0.469917 ACAGCCAACACTACAGCACT 59.530 50.000 0.00 0.00 0.00 4.40
983 1000 2.734079 GAGCAAGTTCCAGAGAAGTTCG 59.266 50.000 0.00 0.00 42.55 3.95
1014 1031 1.080093 GACCATGTCGTCGAGGCAA 60.080 57.895 0.00 0.00 38.34 4.52
1023 1040 4.742201 TCGAGGCAAGACCAGCGC 62.742 66.667 0.00 0.00 43.14 5.92
1413 1433 2.089349 GCACAAGACGAGCGAGACC 61.089 63.158 0.00 0.00 0.00 3.85
1505 1525 2.733218 CGTGGCGCAGAAGACGAA 60.733 61.111 10.83 0.00 33.64 3.85
1586 1606 2.045536 GCAGGAGGCCAAGGACAG 60.046 66.667 5.01 0.00 36.11 3.51
1605 1625 2.036256 ACCATGCAGAAGGCCCAC 59.964 61.111 0.00 0.00 43.89 4.61
1720 1740 2.208349 AGGAAGCCAGGGACAGGT 59.792 61.111 0.00 0.00 37.31 4.00
1773 1828 1.478510 AGGTATGCCACTCAAGTCTCG 59.521 52.381 1.54 0.00 37.19 4.04
1808 1863 3.495001 GCACACAAGTCAAACTAGGACTC 59.505 47.826 1.23 0.00 44.50 3.36
1810 1865 4.508124 CACACAAGTCAAACTAGGACTCAC 59.492 45.833 1.23 0.00 44.50 3.51
1811 1866 4.161565 ACACAAGTCAAACTAGGACTCACA 59.838 41.667 1.23 0.00 44.50 3.58
1812 1867 5.163301 ACACAAGTCAAACTAGGACTCACAT 60.163 40.000 1.23 0.00 44.50 3.21
1825 1880 5.305585 AGGACTCACATCGTACACATTTTT 58.694 37.500 0.00 0.00 0.00 1.94
2085 2140 2.590575 CGGGTGGACAAGTGCGTT 60.591 61.111 0.00 0.00 0.00 4.84
2302 2357 5.617252 TCCAGTAGAACCTTCGTTTTCAAT 58.383 37.500 0.00 0.00 30.30 2.57
2351 2463 6.262273 TCAAGTTCCTTTTACTACTGCCTTTG 59.738 38.462 0.00 0.00 0.00 2.77
2354 2466 5.562298 TCCTTTTACTACTGCCTTTGTCT 57.438 39.130 0.00 0.00 0.00 3.41
2413 2529 7.268447 CGTAAATGCTCTACTGCTTTGTTTTAC 59.732 37.037 0.00 0.00 31.99 2.01
2447 2566 5.080068 GTCTTAGTACGAGTTTTTGCATGC 58.920 41.667 11.82 11.82 0.00 4.06
2507 2660 2.096248 GGTGTCTGTCTACCTCAGGAG 58.904 57.143 0.00 0.00 34.11 3.69
2509 2662 2.750712 GTGTCTGTCTACCTCAGGAGTC 59.249 54.545 0.00 0.00 34.15 3.36
2511 2664 1.907255 TCTGTCTACCTCAGGAGTCGA 59.093 52.381 0.00 0.00 34.15 4.20
2512 2665 2.093394 TCTGTCTACCTCAGGAGTCGAG 60.093 54.545 0.00 0.00 34.15 4.04
2513 2666 1.907255 TGTCTACCTCAGGAGTCGAGA 59.093 52.381 0.00 0.00 31.84 4.04
2514 2667 2.282407 GTCTACCTCAGGAGTCGAGAC 58.718 57.143 0.00 0.00 31.84 3.36
2515 2668 2.093341 GTCTACCTCAGGAGTCGAGACT 60.093 54.545 5.31 5.31 45.84 3.24
2516 2669 3.132646 GTCTACCTCAGGAGTCGAGACTA 59.867 52.174 0.00 0.00 42.66 2.59
2517 2670 2.702592 ACCTCAGGAGTCGAGACTAG 57.297 55.000 0.00 0.13 42.66 2.57
2518 2671 1.910671 ACCTCAGGAGTCGAGACTAGT 59.089 52.381 0.00 0.00 42.66 2.57
2519 2672 2.093341 ACCTCAGGAGTCGAGACTAGTC 60.093 54.545 15.41 15.41 42.66 2.59
2520 2673 2.169769 CCTCAGGAGTCGAGACTAGTCT 59.830 54.545 25.44 25.44 42.66 3.24
2521 2674 3.385433 CCTCAGGAGTCGAGACTAGTCTA 59.615 52.174 25.23 8.37 42.66 2.59
2522 2675 4.365723 CTCAGGAGTCGAGACTAGTCTAC 58.634 52.174 25.23 19.69 42.66 2.59
2523 2676 3.117794 CAGGAGTCGAGACTAGTCTACG 58.882 54.545 25.23 25.57 42.66 3.51
2524 2677 1.860326 GGAGTCGAGACTAGTCTACGC 59.140 57.143 25.23 20.33 42.66 4.42
2525 2678 1.518102 GAGTCGAGACTAGTCTACGCG 59.482 57.143 25.23 22.60 42.66 6.01
2526 2679 1.135141 AGTCGAGACTAGTCTACGCGT 60.135 52.381 25.23 19.17 40.61 6.01
2590 2743 1.720077 CCTTTAGGGAGGGGATGCCC 61.720 65.000 15.97 15.97 41.30 5.36
2610 2763 3.257127 CCCTCATGGCTAGCTACTACTTC 59.743 52.174 15.72 0.00 0.00 3.01
2708 2863 5.886960 AAGAAAACCAGAGAATTCATCGG 57.113 39.130 8.44 6.85 0.00 4.18
2740 2895 9.842775 TTAGAAAAGACATCATGATCATAAGCT 57.157 29.630 8.15 1.41 0.00 3.74
2755 2910 9.813446 TGATCATAAGCTATATATTGTGAGCAG 57.187 33.333 8.72 0.00 37.80 4.24
2756 2911 8.659925 ATCATAAGCTATATATTGTGAGCAGC 57.340 34.615 7.73 1.48 37.40 5.25
2757 2912 7.044181 TCATAAGCTATATATTGTGAGCAGCC 58.956 38.462 7.73 0.00 37.40 4.85
2758 2913 5.495926 AAGCTATATATTGTGAGCAGCCT 57.504 39.130 7.73 0.00 37.40 4.58
2759 2914 5.083533 AGCTATATATTGTGAGCAGCCTC 57.916 43.478 7.73 0.00 37.40 4.70
2760 2915 4.776837 AGCTATATATTGTGAGCAGCCTCT 59.223 41.667 7.73 0.00 38.93 3.69
2761 2916 5.248020 AGCTATATATTGTGAGCAGCCTCTT 59.752 40.000 7.73 0.00 38.93 2.85
2762 2917 5.936956 GCTATATATTGTGAGCAGCCTCTTT 59.063 40.000 1.12 0.00 38.93 2.52
2763 2918 6.128336 GCTATATATTGTGAGCAGCCTCTTTG 60.128 42.308 1.12 0.00 38.93 2.77
2764 2919 1.542492 ATTGTGAGCAGCCTCTTTGG 58.458 50.000 0.00 0.00 38.93 3.28
2775 2930 1.731720 CCTCTTTGGCTTCTCTTCCG 58.268 55.000 0.00 0.00 0.00 4.30
2776 2931 1.276421 CCTCTTTGGCTTCTCTTCCGA 59.724 52.381 0.00 0.00 0.00 4.55
2777 2932 2.342179 CTCTTTGGCTTCTCTTCCGAC 58.658 52.381 0.00 0.00 0.00 4.79
2778 2933 1.691976 TCTTTGGCTTCTCTTCCGACA 59.308 47.619 0.00 0.00 0.00 4.35
2779 2934 2.072298 CTTTGGCTTCTCTTCCGACAG 58.928 52.381 0.00 0.00 0.00 3.51
2780 2935 1.048601 TTGGCTTCTCTTCCGACAGT 58.951 50.000 0.00 0.00 0.00 3.55
2781 2936 0.318441 TGGCTTCTCTTCCGACAGTG 59.682 55.000 0.00 0.00 0.00 3.66
2782 2937 0.318762 GGCTTCTCTTCCGACAGTGT 59.681 55.000 0.00 0.00 0.00 3.55
2783 2938 1.544691 GGCTTCTCTTCCGACAGTGTA 59.455 52.381 0.00 0.00 0.00 2.90
2784 2939 2.416162 GGCTTCTCTTCCGACAGTGTAG 60.416 54.545 0.00 0.00 0.00 2.74
2785 2940 2.869897 CTTCTCTTCCGACAGTGTAGC 58.130 52.381 0.00 0.00 0.00 3.58
2786 2941 1.905637 TCTCTTCCGACAGTGTAGCA 58.094 50.000 0.00 0.00 0.00 3.49
2787 2942 2.235891 TCTCTTCCGACAGTGTAGCAA 58.764 47.619 0.00 0.00 0.00 3.91
2788 2943 2.826128 TCTCTTCCGACAGTGTAGCAAT 59.174 45.455 0.00 0.00 0.00 3.56
2789 2944 3.258372 TCTCTTCCGACAGTGTAGCAATT 59.742 43.478 0.00 0.00 0.00 2.32
2790 2945 3.585862 TCTTCCGACAGTGTAGCAATTC 58.414 45.455 0.00 0.00 0.00 2.17
2791 2946 3.006430 TCTTCCGACAGTGTAGCAATTCA 59.994 43.478 0.00 0.00 0.00 2.57
2792 2947 3.394674 TCCGACAGTGTAGCAATTCAA 57.605 42.857 0.00 0.00 0.00 2.69
2793 2948 3.064207 TCCGACAGTGTAGCAATTCAAC 58.936 45.455 0.00 0.00 0.00 3.18
2794 2949 2.805671 CCGACAGTGTAGCAATTCAACA 59.194 45.455 0.00 0.00 0.00 3.33
2795 2950 3.363970 CCGACAGTGTAGCAATTCAACAC 60.364 47.826 0.00 6.43 0.00 3.32
2796 2951 3.494626 CGACAGTGTAGCAATTCAACACT 59.505 43.478 9.96 9.96 41.67 3.55
2797 2952 4.024893 CGACAGTGTAGCAATTCAACACTT 60.025 41.667 12.18 6.58 39.33 3.16
2798 2953 5.424121 ACAGTGTAGCAATTCAACACTTC 57.576 39.130 12.18 0.00 39.33 3.01
2799 2954 4.275936 ACAGTGTAGCAATTCAACACTTCC 59.724 41.667 12.18 0.00 39.33 3.46
2800 2955 4.516698 CAGTGTAGCAATTCAACACTTCCT 59.483 41.667 12.18 0.00 39.33 3.36
2801 2956 5.700832 CAGTGTAGCAATTCAACACTTCCTA 59.299 40.000 12.18 0.00 39.33 2.94
2802 2957 6.372659 CAGTGTAGCAATTCAACACTTCCTAT 59.627 38.462 12.18 0.00 39.33 2.57
2803 2958 6.595716 AGTGTAGCAATTCAACACTTCCTATC 59.404 38.462 9.96 0.00 38.33 2.08
2804 2959 6.371548 GTGTAGCAATTCAACACTTCCTATCA 59.628 38.462 7.06 0.00 0.00 2.15
2805 2960 7.066284 GTGTAGCAATTCAACACTTCCTATCAT 59.934 37.037 7.06 0.00 0.00 2.45
2806 2961 7.611467 TGTAGCAATTCAACACTTCCTATCATT 59.389 33.333 0.00 0.00 0.00 2.57
2807 2962 7.093322 AGCAATTCAACACTTCCTATCATTC 57.907 36.000 0.00 0.00 0.00 2.67
2808 2963 6.096001 AGCAATTCAACACTTCCTATCATTCC 59.904 38.462 0.00 0.00 0.00 3.01
2809 2964 6.681368 GCAATTCAACACTTCCTATCATTCCC 60.681 42.308 0.00 0.00 0.00 3.97
2810 2965 4.137116 TCAACACTTCCTATCATTCCCG 57.863 45.455 0.00 0.00 0.00 5.14
2811 2966 3.772572 TCAACACTTCCTATCATTCCCGA 59.227 43.478 0.00 0.00 0.00 5.14
2812 2967 4.224147 TCAACACTTCCTATCATTCCCGAA 59.776 41.667 0.00 0.00 0.00 4.30
2813 2968 4.837093 ACACTTCCTATCATTCCCGAAA 57.163 40.909 0.00 0.00 0.00 3.46
2814 2969 5.373812 ACACTTCCTATCATTCCCGAAAT 57.626 39.130 0.00 0.00 0.00 2.17
2815 2970 5.126067 ACACTTCCTATCATTCCCGAAATG 58.874 41.667 4.62 4.62 45.22 2.32
2824 2979 4.905429 TCATTCCCGAAATGACAGAAAGA 58.095 39.130 8.55 0.00 46.96 2.52
2825 2980 5.312895 TCATTCCCGAAATGACAGAAAGAA 58.687 37.500 8.55 0.00 46.96 2.52
2826 2981 5.181245 TCATTCCCGAAATGACAGAAAGAAC 59.819 40.000 8.55 0.00 46.96 3.01
2827 2982 4.079980 TCCCGAAATGACAGAAAGAACA 57.920 40.909 0.00 0.00 0.00 3.18
2828 2983 4.456535 TCCCGAAATGACAGAAAGAACAA 58.543 39.130 0.00 0.00 0.00 2.83
2829 2984 5.070001 TCCCGAAATGACAGAAAGAACAAT 58.930 37.500 0.00 0.00 0.00 2.71
2830 2985 5.534654 TCCCGAAATGACAGAAAGAACAATT 59.465 36.000 0.00 0.00 0.00 2.32
2831 2986 5.630680 CCCGAAATGACAGAAAGAACAATTG 59.369 40.000 3.24 3.24 0.00 2.32
2832 2987 5.630680 CCGAAATGACAGAAAGAACAATTGG 59.369 40.000 10.83 0.00 0.00 3.16
2833 2988 5.117592 CGAAATGACAGAAAGAACAATTGGC 59.882 40.000 10.83 1.25 0.00 4.52
2834 2989 4.525912 ATGACAGAAAGAACAATTGGCC 57.474 40.909 10.83 0.00 0.00 5.36
2835 2990 2.627699 TGACAGAAAGAACAATTGGCCC 59.372 45.455 10.83 0.00 0.00 5.80
2836 2991 2.893489 GACAGAAAGAACAATTGGCCCT 59.107 45.455 10.83 0.59 0.00 5.19
2837 2992 3.308401 ACAGAAAGAACAATTGGCCCTT 58.692 40.909 10.83 6.88 0.00 3.95
2838 2993 3.070015 ACAGAAAGAACAATTGGCCCTTG 59.930 43.478 10.83 12.36 0.00 3.61
2839 2994 3.070015 CAGAAAGAACAATTGGCCCTTGT 59.930 43.478 13.53 13.53 38.44 3.16
2840 2995 4.280677 CAGAAAGAACAATTGGCCCTTGTA 59.719 41.667 18.18 0.00 35.84 2.41
2841 2996 4.280929 AGAAAGAACAATTGGCCCTTGTAC 59.719 41.667 18.18 9.67 35.84 2.90
2842 2997 2.159382 AGAACAATTGGCCCTTGTACG 58.841 47.619 18.18 0.00 35.84 3.67
2843 2998 2.156098 GAACAATTGGCCCTTGTACGA 58.844 47.619 18.18 0.00 35.84 3.43
2844 2999 2.279935 ACAATTGGCCCTTGTACGAA 57.720 45.000 16.81 0.00 35.15 3.85
2845 3000 2.159382 ACAATTGGCCCTTGTACGAAG 58.841 47.619 16.81 0.00 35.15 3.79
2846 3001 1.472480 CAATTGGCCCTTGTACGAAGG 59.528 52.381 0.00 13.95 37.17 3.46
2847 3002 0.988832 ATTGGCCCTTGTACGAAGGA 59.011 50.000 19.62 5.94 39.81 3.36
2848 3003 0.766131 TTGGCCCTTGTACGAAGGAA 59.234 50.000 19.62 8.32 39.81 3.36
2849 3004 0.766131 TGGCCCTTGTACGAAGGAAA 59.234 50.000 19.62 7.16 39.81 3.13
2850 3005 1.162698 GGCCCTTGTACGAAGGAAAC 58.837 55.000 19.62 11.53 39.81 2.78
2851 3006 0.794473 GCCCTTGTACGAAGGAAACG 59.206 55.000 19.62 8.66 39.81 3.60
2852 3007 1.435577 CCCTTGTACGAAGGAAACGG 58.564 55.000 19.62 1.53 39.81 4.44
2853 3008 1.270465 CCCTTGTACGAAGGAAACGGT 60.270 52.381 19.62 0.00 39.81 4.83
2854 3009 1.796459 CCTTGTACGAAGGAAACGGTG 59.204 52.381 15.18 0.00 39.81 4.94
2855 3010 2.546373 CCTTGTACGAAGGAAACGGTGA 60.546 50.000 15.18 0.00 39.81 4.02
2856 3011 3.323243 CTTGTACGAAGGAAACGGTGAT 58.677 45.455 0.00 0.00 34.93 3.06
2857 3012 4.487948 CTTGTACGAAGGAAACGGTGATA 58.512 43.478 0.00 0.00 34.93 2.15
2858 3013 4.100707 TGTACGAAGGAAACGGTGATAG 57.899 45.455 0.00 0.00 34.93 2.08
2859 3014 3.507233 TGTACGAAGGAAACGGTGATAGT 59.493 43.478 0.00 0.00 34.93 2.12
2860 3015 3.672767 ACGAAGGAAACGGTGATAGTT 57.327 42.857 0.00 0.00 34.93 2.24
2861 3016 3.582780 ACGAAGGAAACGGTGATAGTTC 58.417 45.455 0.00 0.00 34.93 3.01
2862 3017 2.597305 CGAAGGAAACGGTGATAGTTCG 59.403 50.000 0.00 0.00 0.00 3.95
2863 3018 2.667473 AGGAAACGGTGATAGTTCGG 57.333 50.000 0.00 0.00 0.00 4.30
2864 3019 1.206371 AGGAAACGGTGATAGTTCGGG 59.794 52.381 0.00 0.00 0.00 5.14
2865 3020 1.004595 GAAACGGTGATAGTTCGGGC 58.995 55.000 0.00 0.00 0.00 6.13
2866 3021 0.322322 AAACGGTGATAGTTCGGGCA 59.678 50.000 0.00 0.00 0.00 5.36
2867 3022 0.539986 AACGGTGATAGTTCGGGCAT 59.460 50.000 0.00 0.00 0.00 4.40
2868 3023 0.104304 ACGGTGATAGTTCGGGCATC 59.896 55.000 0.00 0.00 0.00 3.91
2869 3024 0.389391 CGGTGATAGTTCGGGCATCT 59.611 55.000 0.00 0.00 0.00 2.90
2870 3025 1.603172 CGGTGATAGTTCGGGCATCTC 60.603 57.143 0.00 0.00 0.00 2.75
2871 3026 1.270358 GGTGATAGTTCGGGCATCTCC 60.270 57.143 0.00 0.00 0.00 3.71
2872 3027 1.412710 GTGATAGTTCGGGCATCTCCA 59.587 52.381 0.00 0.00 36.21 3.86
2873 3028 2.115427 TGATAGTTCGGGCATCTCCAA 58.885 47.619 0.00 0.00 36.21 3.53
2874 3029 2.158957 TGATAGTTCGGGCATCTCCAAC 60.159 50.000 0.00 0.00 36.21 3.77
2875 3030 0.174845 TAGTTCGGGCATCTCCAACG 59.825 55.000 0.00 0.00 36.21 4.10
2876 3031 2.435938 TTCGGGCATCTCCAACGC 60.436 61.111 0.00 0.00 36.21 4.84
2877 3032 3.247056 TTCGGGCATCTCCAACGCA 62.247 57.895 0.00 0.00 36.21 5.24
2878 3033 2.739849 TTCGGGCATCTCCAACGCAA 62.740 55.000 0.00 0.00 36.21 4.85
2879 3034 2.331893 CGGGCATCTCCAACGCAAA 61.332 57.895 0.00 0.00 36.21 3.68
2880 3035 1.656818 CGGGCATCTCCAACGCAAAT 61.657 55.000 0.00 0.00 36.21 2.32
2881 3036 0.532115 GGGCATCTCCAACGCAAATT 59.468 50.000 0.00 0.00 36.21 1.82
2882 3037 1.469767 GGGCATCTCCAACGCAAATTC 60.470 52.381 0.00 0.00 36.21 2.17
2883 3038 1.474077 GGCATCTCCAACGCAAATTCT 59.526 47.619 0.00 0.00 34.01 2.40
2884 3039 2.478539 GGCATCTCCAACGCAAATTCTC 60.479 50.000 0.00 0.00 34.01 2.87
2885 3040 2.478539 GCATCTCCAACGCAAATTCTCC 60.479 50.000 0.00 0.00 0.00 3.71
2886 3041 1.821216 TCTCCAACGCAAATTCTCCC 58.179 50.000 0.00 0.00 0.00 4.30
2887 3042 1.073125 TCTCCAACGCAAATTCTCCCA 59.927 47.619 0.00 0.00 0.00 4.37
2888 3043 1.885887 CTCCAACGCAAATTCTCCCAA 59.114 47.619 0.00 0.00 0.00 4.12
2889 3044 2.295909 CTCCAACGCAAATTCTCCCAAA 59.704 45.455 0.00 0.00 0.00 3.28
2890 3045 2.695666 TCCAACGCAAATTCTCCCAAAA 59.304 40.909 0.00 0.00 0.00 2.44
2891 3046 3.133003 TCCAACGCAAATTCTCCCAAAAA 59.867 39.130 0.00 0.00 0.00 1.94
2914 3069 6.575162 AAAAACTCTCAACGCATATTTCCT 57.425 33.333 0.00 0.00 0.00 3.36
2915 3070 7.681939 AAAAACTCTCAACGCATATTTCCTA 57.318 32.000 0.00 0.00 0.00 2.94
2916 3071 7.865706 AAAACTCTCAACGCATATTTCCTAT 57.134 32.000 0.00 0.00 0.00 2.57
2917 3072 7.484035 AAACTCTCAACGCATATTTCCTATC 57.516 36.000 0.00 0.00 0.00 2.08
2918 3073 6.161855 ACTCTCAACGCATATTTCCTATCA 57.838 37.500 0.00 0.00 0.00 2.15
2919 3074 6.763355 ACTCTCAACGCATATTTCCTATCAT 58.237 36.000 0.00 0.00 0.00 2.45
2920 3075 7.220030 ACTCTCAACGCATATTTCCTATCATT 58.780 34.615 0.00 0.00 0.00 2.57
2921 3076 7.386299 ACTCTCAACGCATATTTCCTATCATTC 59.614 37.037 0.00 0.00 0.00 2.67
2922 3077 6.650807 TCTCAACGCATATTTCCTATCATTCC 59.349 38.462 0.00 0.00 0.00 3.01
2923 3078 6.533730 TCAACGCATATTTCCTATCATTCCT 58.466 36.000 0.00 0.00 0.00 3.36
2924 3079 6.427853 TCAACGCATATTTCCTATCATTCCTG 59.572 38.462 0.00 0.00 0.00 3.86
2925 3080 6.114187 ACGCATATTTCCTATCATTCCTGA 57.886 37.500 0.00 0.00 35.41 3.86
2926 3081 6.533730 ACGCATATTTCCTATCATTCCTGAA 58.466 36.000 0.00 0.00 34.37 3.02
2927 3082 6.998074 ACGCATATTTCCTATCATTCCTGAAA 59.002 34.615 0.00 0.00 34.37 2.69
2928 3083 7.667219 ACGCATATTTCCTATCATTCCTGAAAT 59.333 33.333 0.00 0.00 38.68 2.17
2929 3084 7.966753 CGCATATTTCCTATCATTCCTGAAATG 59.033 37.037 0.00 0.00 45.22 2.32
2940 3095 7.206981 TCATTCCTGAAATGACAGAAAGAAC 57.793 36.000 0.00 0.00 46.96 3.01
2941 3096 6.772233 TCATTCCTGAAATGACAGAAAGAACA 59.228 34.615 0.00 0.00 46.96 3.18
2942 3097 6.624352 TTCCTGAAATGACAGAAAGAACAG 57.376 37.500 0.00 0.00 39.94 3.16
2943 3098 5.684704 TCCTGAAATGACAGAAAGAACAGT 58.315 37.500 0.00 0.00 39.94 3.55
2944 3099 6.122277 TCCTGAAATGACAGAAAGAACAGTT 58.878 36.000 0.00 0.00 39.94 3.16
2945 3100 6.038603 TCCTGAAATGACAGAAAGAACAGTTG 59.961 38.462 0.00 0.00 39.94 3.16
2946 3101 6.135290 TGAAATGACAGAAAGAACAGTTGG 57.865 37.500 0.00 0.00 0.00 3.77
2947 3102 5.652014 TGAAATGACAGAAAGAACAGTTGGT 59.348 36.000 0.00 0.00 0.00 3.67
2948 3103 5.757850 AATGACAGAAAGAACAGTTGGTC 57.242 39.130 0.00 0.00 0.00 4.02
2949 3104 4.214986 TGACAGAAAGAACAGTTGGTCA 57.785 40.909 0.00 0.00 33.22 4.02
2950 3105 3.938963 TGACAGAAAGAACAGTTGGTCAC 59.061 43.478 0.00 0.00 33.22 3.67
2951 3106 3.938963 GACAGAAAGAACAGTTGGTCACA 59.061 43.478 0.00 0.00 33.22 3.58
2952 3107 4.331968 ACAGAAAGAACAGTTGGTCACAA 58.668 39.130 0.00 0.00 33.22 3.33
2953 3108 4.764823 ACAGAAAGAACAGTTGGTCACAAA 59.235 37.500 0.00 0.00 38.54 2.83
2954 3109 5.418840 ACAGAAAGAACAGTTGGTCACAAAT 59.581 36.000 0.00 0.00 38.54 2.32
2955 3110 6.071391 ACAGAAAGAACAGTTGGTCACAAATT 60.071 34.615 0.00 0.00 38.54 1.82
2956 3111 6.813152 CAGAAAGAACAGTTGGTCACAAATTT 59.187 34.615 0.00 0.00 38.54 1.82
2957 3112 7.009540 CAGAAAGAACAGTTGGTCACAAATTTC 59.990 37.037 0.00 1.18 38.54 2.17
2958 3113 5.262588 AGAACAGTTGGTCACAAATTTCC 57.737 39.130 0.00 0.00 38.54 3.13
2959 3114 4.956075 AGAACAGTTGGTCACAAATTTCCT 59.044 37.500 0.00 0.00 38.54 3.36
2960 3115 6.126409 AGAACAGTTGGTCACAAATTTCCTA 58.874 36.000 0.00 0.00 38.54 2.94
2961 3116 6.777580 AGAACAGTTGGTCACAAATTTCCTAT 59.222 34.615 0.00 0.00 38.54 2.57
2962 3117 6.575162 ACAGTTGGTCACAAATTTCCTATC 57.425 37.500 0.00 0.00 38.54 2.08
2963 3118 6.068010 ACAGTTGGTCACAAATTTCCTATCA 58.932 36.000 0.00 0.00 38.54 2.15
2964 3119 6.016276 ACAGTTGGTCACAAATTTCCTATCAC 60.016 38.462 0.00 0.00 38.54 3.06
2965 3120 6.207417 CAGTTGGTCACAAATTTCCTATCACT 59.793 38.462 0.00 0.00 38.54 3.41
2966 3121 7.390440 CAGTTGGTCACAAATTTCCTATCACTA 59.610 37.037 0.00 0.00 38.54 2.74
2967 3122 7.607991 AGTTGGTCACAAATTTCCTATCACTAG 59.392 37.037 0.00 0.00 38.54 2.57
2968 3123 7.252612 TGGTCACAAATTTCCTATCACTAGA 57.747 36.000 0.00 0.00 0.00 2.43
2969 3124 7.861629 TGGTCACAAATTTCCTATCACTAGAT 58.138 34.615 0.00 0.00 38.29 1.98
2970 3125 7.770433 TGGTCACAAATTTCCTATCACTAGATG 59.230 37.037 0.00 0.00 35.67 2.90
2971 3126 7.987458 GGTCACAAATTTCCTATCACTAGATGA 59.013 37.037 0.00 0.00 43.13 2.92
2972 3127 8.821894 GTCACAAATTTCCTATCACTAGATGAC 58.178 37.037 0.00 0.00 41.24 3.06
2973 3128 8.539544 TCACAAATTTCCTATCACTAGATGACA 58.460 33.333 0.00 0.00 41.24 3.58
2974 3129 8.607459 CACAAATTTCCTATCACTAGATGACAC 58.393 37.037 0.00 0.00 41.24 3.67
2975 3130 7.770897 ACAAATTTCCTATCACTAGATGACACC 59.229 37.037 0.00 0.00 41.24 4.16
2976 3131 5.871396 TTTCCTATCACTAGATGACACCC 57.129 43.478 0.00 0.00 41.24 4.61
2977 3132 3.487372 TCCTATCACTAGATGACACCCG 58.513 50.000 0.00 0.00 41.24 5.28
2978 3133 3.117625 TCCTATCACTAGATGACACCCGT 60.118 47.826 0.00 0.00 41.24 5.28
2979 3134 3.004839 CCTATCACTAGATGACACCCGTG 59.995 52.174 0.00 0.00 41.24 4.94
2980 3135 1.182667 TCACTAGATGACACCCGTGG 58.817 55.000 0.00 0.00 29.99 4.94
2981 3136 0.895530 CACTAGATGACACCCGTGGT 59.104 55.000 0.00 0.00 35.62 4.16
2982 3137 4.996455 ATCACTAGATGACACCCGTGGTG 61.996 52.174 18.16 18.16 45.23 4.17
2990 3145 2.282674 ACCCGTGGTGCTAGACGA 60.283 61.111 3.46 0.00 37.81 4.20
2991 3146 2.181021 CCCGTGGTGCTAGACGAC 59.819 66.667 3.46 1.41 37.81 4.34
2992 3147 2.632544 CCCGTGGTGCTAGACGACA 61.633 63.158 3.46 0.00 37.81 4.35
2993 3148 1.443872 CCGTGGTGCTAGACGACAC 60.444 63.158 3.46 1.16 37.81 3.67
3010 3165 2.523440 ACCCGTGGTGACAGAAAGA 58.477 52.632 0.00 0.00 44.46 2.52
3011 3166 0.834612 ACCCGTGGTGACAGAAAGAA 59.165 50.000 0.00 0.00 44.46 2.52
3012 3167 1.226746 CCCGTGGTGACAGAAAGAAC 58.773 55.000 0.00 0.00 44.46 3.01
3013 3168 1.474320 CCCGTGGTGACAGAAAGAACA 60.474 52.381 0.00 0.00 44.46 3.18
3014 3169 1.867233 CCGTGGTGACAGAAAGAACAG 59.133 52.381 0.00 0.00 44.46 3.16
3015 3170 2.550978 CGTGGTGACAGAAAGAACAGT 58.449 47.619 0.00 0.00 44.46 3.55
3016 3171 2.936498 CGTGGTGACAGAAAGAACAGTT 59.064 45.455 0.00 0.00 44.46 3.16
3017 3172 3.242413 CGTGGTGACAGAAAGAACAGTTG 60.242 47.826 0.00 0.00 44.46 3.16
3018 3173 3.065371 GTGGTGACAGAAAGAACAGTTGG 59.935 47.826 0.00 0.00 44.46 3.77
3019 3174 3.279434 GGTGACAGAAAGAACAGTTGGT 58.721 45.455 0.00 0.00 0.00 3.67
3020 3175 3.312697 GGTGACAGAAAGAACAGTTGGTC 59.687 47.826 0.00 0.00 0.00 4.02
3021 3176 3.938963 GTGACAGAAAGAACAGTTGGTCA 59.061 43.478 0.00 0.00 33.22 4.02
3022 3177 3.938963 TGACAGAAAGAACAGTTGGTCAC 59.061 43.478 0.00 0.00 33.22 3.67
3023 3178 3.938963 GACAGAAAGAACAGTTGGTCACA 59.061 43.478 0.00 0.00 33.22 3.58
3024 3179 4.331968 ACAGAAAGAACAGTTGGTCACAA 58.668 39.130 0.00 0.00 33.22 3.33
3025 3180 4.764823 ACAGAAAGAACAGTTGGTCACAAA 59.235 37.500 0.00 0.00 38.54 2.83
3026 3181 5.418840 ACAGAAAGAACAGTTGGTCACAAAT 59.581 36.000 0.00 0.00 38.54 2.32
3027 3182 6.601613 ACAGAAAGAACAGTTGGTCACAAATA 59.398 34.615 0.00 0.00 38.54 1.40
3028 3183 7.122055 ACAGAAAGAACAGTTGGTCACAAATAA 59.878 33.333 0.00 0.00 38.54 1.40
3029 3184 7.973388 CAGAAAGAACAGTTGGTCACAAATAAA 59.027 33.333 0.00 0.00 38.54 1.40
3030 3185 8.695456 AGAAAGAACAGTTGGTCACAAATAAAT 58.305 29.630 0.00 0.00 38.54 1.40
3031 3186 9.959749 GAAAGAACAGTTGGTCACAAATAAATA 57.040 29.630 0.00 0.00 38.54 1.40
3032 3187 9.965824 AAAGAACAGTTGGTCACAAATAAATAG 57.034 29.630 0.00 0.00 38.54 1.73
3033 3188 8.918202 AGAACAGTTGGTCACAAATAAATAGA 57.082 30.769 0.00 0.00 38.54 1.98
3034 3189 8.784043 AGAACAGTTGGTCACAAATAAATAGAC 58.216 33.333 0.00 0.00 38.54 2.59
3035 3190 7.129109 ACAGTTGGTCACAAATAAATAGACG 57.871 36.000 0.00 0.00 38.54 4.18
3036 3191 6.708949 ACAGTTGGTCACAAATAAATAGACGT 59.291 34.615 0.00 0.00 38.54 4.34
3037 3192 7.015289 CAGTTGGTCACAAATAAATAGACGTG 58.985 38.462 0.00 0.00 38.54 4.49
3038 3193 6.932400 AGTTGGTCACAAATAAATAGACGTGA 59.068 34.615 0.00 0.00 38.54 4.35
3043 3198 7.453838 GTCACAAATAAATAGACGTGACTTCC 58.546 38.462 12.02 0.00 46.06 3.46
3044 3199 6.592607 TCACAAATAAATAGACGTGACTTCCC 59.407 38.462 0.00 0.00 0.00 3.97
3045 3200 6.594159 CACAAATAAATAGACGTGACTTCCCT 59.406 38.462 0.00 0.00 0.00 4.20
3046 3201 7.119262 CACAAATAAATAGACGTGACTTCCCTT 59.881 37.037 0.00 0.00 0.00 3.95
3047 3202 7.333672 ACAAATAAATAGACGTGACTTCCCTTC 59.666 37.037 0.00 0.00 0.00 3.46
3048 3203 6.793505 ATAAATAGACGTGACTTCCCTTCT 57.206 37.500 0.00 0.00 0.00 2.85
3049 3204 7.893124 ATAAATAGACGTGACTTCCCTTCTA 57.107 36.000 0.00 0.00 0.00 2.10
3050 3205 5.838531 AATAGACGTGACTTCCCTTCTAG 57.161 43.478 0.00 0.00 0.00 2.43
3051 3206 3.157750 AGACGTGACTTCCCTTCTAGT 57.842 47.619 0.00 0.00 0.00 2.57
3052 3207 3.498334 AGACGTGACTTCCCTTCTAGTT 58.502 45.455 0.00 0.00 0.00 2.24
3053 3208 3.256136 AGACGTGACTTCCCTTCTAGTTG 59.744 47.826 0.00 0.00 0.00 3.16
3054 3209 2.963782 ACGTGACTTCCCTTCTAGTTGT 59.036 45.455 0.00 0.00 0.00 3.32
3055 3210 4.147321 ACGTGACTTCCCTTCTAGTTGTA 58.853 43.478 0.00 0.00 0.00 2.41
3056 3211 4.022503 ACGTGACTTCCCTTCTAGTTGTAC 60.023 45.833 0.00 0.00 0.00 2.90
3057 3212 4.022589 CGTGACTTCCCTTCTAGTTGTACA 60.023 45.833 0.00 0.00 0.00 2.90
3058 3213 5.336531 CGTGACTTCCCTTCTAGTTGTACAT 60.337 44.000 0.00 0.00 0.00 2.29
3059 3214 5.869888 GTGACTTCCCTTCTAGTTGTACATG 59.130 44.000 0.00 0.00 0.00 3.21
3060 3215 4.833390 ACTTCCCTTCTAGTTGTACATGC 58.167 43.478 0.00 0.00 0.00 4.06
3061 3216 4.286032 ACTTCCCTTCTAGTTGTACATGCA 59.714 41.667 0.00 0.00 0.00 3.96
3062 3217 4.471904 TCCCTTCTAGTTGTACATGCAG 57.528 45.455 0.00 0.00 0.00 4.41
3063 3218 2.939103 CCCTTCTAGTTGTACATGCAGC 59.061 50.000 0.00 0.00 0.00 5.25
3064 3219 3.369892 CCCTTCTAGTTGTACATGCAGCT 60.370 47.826 0.00 0.00 34.40 4.24
3065 3220 3.620374 CCTTCTAGTTGTACATGCAGCTG 59.380 47.826 10.11 10.11 32.33 4.24
3066 3221 3.961480 TCTAGTTGTACATGCAGCTGT 57.039 42.857 16.64 0.00 32.33 4.40
3067 3222 5.400066 TTCTAGTTGTACATGCAGCTGTA 57.600 39.130 16.64 12.13 32.33 2.74
3068 3223 5.598416 TCTAGTTGTACATGCAGCTGTAT 57.402 39.130 16.64 14.28 34.33 2.29
3069 3224 5.592054 TCTAGTTGTACATGCAGCTGTATC 58.408 41.667 14.99 4.71 34.33 2.24
3070 3225 4.206477 AGTTGTACATGCAGCTGTATCA 57.794 40.909 14.99 7.42 34.33 2.15
3071 3226 4.774124 AGTTGTACATGCAGCTGTATCAT 58.226 39.130 14.99 6.91 34.33 2.45
3072 3227 5.188434 AGTTGTACATGCAGCTGTATCATT 58.812 37.500 14.99 4.94 34.33 2.57
3073 3228 5.065602 AGTTGTACATGCAGCTGTATCATTG 59.934 40.000 14.99 7.94 34.33 2.82
3074 3229 3.313249 TGTACATGCAGCTGTATCATTGC 59.687 43.478 14.99 6.53 34.33 3.56
3075 3230 1.332686 ACATGCAGCTGTATCATTGCG 59.667 47.619 14.99 5.22 39.34 4.85
3076 3231 1.332686 CATGCAGCTGTATCATTGCGT 59.667 47.619 14.99 0.00 39.34 5.24
3077 3232 1.009078 TGCAGCTGTATCATTGCGTC 58.991 50.000 16.64 0.00 39.34 5.19
3078 3233 1.009078 GCAGCTGTATCATTGCGTCA 58.991 50.000 16.64 0.00 0.00 4.35
3079 3234 1.398041 GCAGCTGTATCATTGCGTCAA 59.602 47.619 16.64 0.00 0.00 3.18
3080 3235 2.032550 GCAGCTGTATCATTGCGTCAAT 59.967 45.455 16.64 0.09 34.04 2.57
3095 3250 9.128107 CATTGCGTCAATGTTTATTAAGTTTCT 57.872 29.630 18.50 0.00 44.12 2.52
3096 3251 9.691362 ATTGCGTCAATGTTTATTAAGTTTCTT 57.309 25.926 4.59 0.00 32.39 2.52
3097 3252 8.722342 TGCGTCAATGTTTATTAAGTTTCTTC 57.278 30.769 0.00 0.00 0.00 2.87
3098 3253 8.564574 TGCGTCAATGTTTATTAAGTTTCTTCT 58.435 29.630 0.00 0.00 0.00 2.85
3131 3286 9.927668 AAATCAATGTATTCGTCTTTCCAAAAT 57.072 25.926 0.00 0.00 0.00 1.82
3132 3287 9.573133 AATCAATGTATTCGTCTTTCCAAAATC 57.427 29.630 0.00 0.00 0.00 2.17
3133 3288 8.105097 TCAATGTATTCGTCTTTCCAAAATCA 57.895 30.769 0.00 0.00 0.00 2.57
3134 3289 8.572185 TCAATGTATTCGTCTTTCCAAAATCAA 58.428 29.630 0.00 0.00 0.00 2.57
3135 3290 9.190858 CAATGTATTCGTCTTTCCAAAATCAAA 57.809 29.630 0.00 0.00 0.00 2.69
3136 3291 9.757227 AATGTATTCGTCTTTCCAAAATCAAAA 57.243 25.926 0.00 0.00 0.00 2.44
3137 3292 8.568732 TGTATTCGTCTTTCCAAAATCAAAAC 57.431 30.769 0.00 0.00 0.00 2.43
3138 3293 6.747659 ATTCGTCTTTCCAAAATCAAAACG 57.252 33.333 0.00 0.00 0.00 3.60
3139 3294 5.487153 TCGTCTTTCCAAAATCAAAACGA 57.513 34.783 0.00 0.00 34.62 3.85
3140 3295 5.507077 TCGTCTTTCCAAAATCAAAACGAG 58.493 37.500 0.00 0.00 33.31 4.18
3141 3296 4.146443 CGTCTTTCCAAAATCAAAACGAGC 59.854 41.667 0.00 0.00 0.00 5.03
3142 3297 5.040635 GTCTTTCCAAAATCAAAACGAGCA 58.959 37.500 0.00 0.00 0.00 4.26
3143 3298 5.691754 GTCTTTCCAAAATCAAAACGAGCAT 59.308 36.000 0.00 0.00 0.00 3.79
3144 3299 5.920273 TCTTTCCAAAATCAAAACGAGCATC 59.080 36.000 0.00 0.00 0.00 3.91
3145 3300 4.173036 TCCAAAATCAAAACGAGCATCC 57.827 40.909 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 1.009199 ACCCCGCCCCCTTTTATTAA 58.991 50.000 0.00 0.00 0.00 1.40
167 173 9.408069 ACGTGTATTTGAAAAACTTTTAACACA 57.592 25.926 0.00 0.77 0.00 3.72
214 220 9.843334 ATGTTCACTACGTTTTAAAAAGTTTCA 57.157 25.926 21.71 13.08 32.92 2.69
272 278 6.089283 TCACGCATTTTTAAAATGTGCTCATC 59.911 34.615 31.37 14.48 40.69 2.92
348 355 9.398170 CAAAACAGATGTTCAGGTAATAAACAG 57.602 33.333 0.00 0.00 37.25 3.16
350 357 7.865385 TGCAAAACAGATGTTCAGGTAATAAAC 59.135 33.333 0.00 0.00 37.25 2.01
352 359 7.517614 TGCAAAACAGATGTTCAGGTAATAA 57.482 32.000 0.00 0.00 37.25 1.40
463 473 2.032377 TGTTCGCGCAACTTTTAGAAGG 60.032 45.455 18.81 0.00 37.19 3.46
566 577 4.987912 TGATCGCCTTTTGTTTTGATTTCC 59.012 37.500 0.00 0.00 0.00 3.13
581 592 0.914417 TCCCTTCCCTTTGATCGCCT 60.914 55.000 0.00 0.00 0.00 5.52
582 593 0.034477 TTCCCTTCCCTTTGATCGCC 60.034 55.000 0.00 0.00 0.00 5.54
620 631 0.179043 TGTGGGCGTGAAACTTAGCA 60.179 50.000 0.00 0.00 31.75 3.49
633 644 0.168128 GTGTGTCGCTTAATGTGGGC 59.832 55.000 0.00 0.00 0.00 5.36
634 645 1.464608 CTGTGTGTCGCTTAATGTGGG 59.535 52.381 0.00 0.00 0.00 4.61
635 646 2.143122 ACTGTGTGTCGCTTAATGTGG 58.857 47.619 0.00 0.00 0.00 4.17
648 659 2.740055 GCAGGGAGCGACTGTGTG 60.740 66.667 7.09 0.00 38.22 3.82
804 821 1.966451 CGTGTTGGAAGACAGGGCC 60.966 63.158 0.00 0.00 33.13 5.80
894 911 1.339929 TGACTGAGCTAGCGTTTGTGA 59.660 47.619 9.55 0.00 0.00 3.58
911 928 3.319238 GTGTTGCAGTACACAAGTGAC 57.681 47.619 15.25 1.43 46.00 3.67
952 969 0.732880 GAACTTGCTCGCTCGTGCTA 60.733 55.000 15.65 8.63 36.97 3.49
1296 1316 1.153823 CGCCTGGTAGGTCTTGTCG 60.154 63.158 0.00 0.00 37.80 4.35
1334 1354 0.527817 GTCCTTGTACTCGCCCATCG 60.528 60.000 0.00 0.00 40.15 3.84
1336 1356 1.755380 GTAGTCCTTGTACTCGCCCAT 59.245 52.381 0.00 0.00 0.00 4.00
1454 1474 4.415332 TCGCCTTCTCGACGGTGC 62.415 66.667 0.00 0.00 33.02 5.01
1505 1525 2.045242 TAGCCTCAGCGGTCTCGT 60.045 61.111 0.00 0.00 46.67 4.18
1586 1606 3.455469 GGGCCTTCTGCATGGTGC 61.455 66.667 0.84 0.00 45.29 5.01
2022 2077 1.401199 CGGTCCTTCTCCTCGAAGTAC 59.599 57.143 0.00 0.00 46.23 2.73
2079 2134 1.083401 CACGCACTTCTCAACGCAC 60.083 57.895 0.00 0.00 0.00 5.34
2085 2140 1.371183 CCCTTCCACGCACTTCTCA 59.629 57.895 0.00 0.00 0.00 3.27
2288 2343 8.255206 AGTAAAAAGGAAATTGAAAACGAAGGT 58.745 29.630 0.00 0.00 0.00 3.50
2351 2463 2.593257 GGACGCACACACTACTTAGAC 58.407 52.381 0.00 0.00 0.00 2.59
2354 2466 1.624336 AGGGACGCACACACTACTTA 58.376 50.000 0.00 0.00 0.00 2.24
2413 2529 3.376234 TCGTACTAAGACACCGGAGATTG 59.624 47.826 9.46 0.00 0.00 2.67
2447 2566 0.667487 CGCAGACAGTACACACAGGG 60.667 60.000 0.00 0.00 0.00 4.45
2478 2597 3.181489 GGTAGACAGACACCAATACGAGG 60.181 52.174 0.00 0.00 34.77 4.63
2507 2660 1.006183 CACGCGTAGACTAGTCTCGAC 60.006 57.143 31.24 23.70 40.93 4.20
2509 2662 0.997932 ACACGCGTAGACTAGTCTCG 59.002 55.000 28.42 27.31 40.93 4.04
2511 2664 1.463831 CACACACGCGTAGACTAGTCT 59.536 52.381 27.72 27.72 43.40 3.24
2512 2665 1.196354 ACACACACGCGTAGACTAGTC 59.804 52.381 13.44 15.41 0.00 2.59
2513 2666 1.069432 CACACACACGCGTAGACTAGT 60.069 52.381 13.44 0.39 0.00 2.57
2514 2667 1.069432 ACACACACACGCGTAGACTAG 60.069 52.381 13.44 0.00 0.00 2.57
2515 2668 0.946528 ACACACACACGCGTAGACTA 59.053 50.000 13.44 0.00 0.00 2.59
2516 2669 0.594028 CACACACACACGCGTAGACT 60.594 55.000 13.44 0.00 0.00 3.24
2517 2670 0.868602 ACACACACACACGCGTAGAC 60.869 55.000 13.44 0.00 0.00 2.59
2518 2671 0.179132 AACACACACACACGCGTAGA 60.179 50.000 13.44 0.00 0.00 2.59
2519 2672 0.043396 CAACACACACACACGCGTAG 60.043 55.000 13.44 10.78 0.00 3.51
2520 2673 0.736672 ACAACACACACACACGCGTA 60.737 50.000 13.44 0.00 0.00 4.42
2521 2674 2.030401 ACAACACACACACACGCGT 61.030 52.632 5.58 5.58 0.00 6.01
2522 2675 1.579879 CACAACACACACACACGCG 60.580 57.895 3.53 3.53 0.00 6.01
2523 2676 0.792729 CACACAACACACACACACGC 60.793 55.000 0.00 0.00 0.00 5.34
2524 2677 0.792729 GCACACAACACACACACACG 60.793 55.000 0.00 0.00 0.00 4.49
2525 2678 0.239613 TGCACACAACACACACACAC 59.760 50.000 0.00 0.00 0.00 3.82
2526 2679 0.239613 GTGCACACAACACACACACA 59.760 50.000 13.17 0.00 37.96 3.72
2554 2707 4.351131 AAAGGAAAAATACCGATCGTGC 57.649 40.909 15.09 0.00 0.00 5.34
2563 2716 5.461516 TCCCCTCCCTAAAGGAAAAATAC 57.538 43.478 0.00 0.00 46.94 1.89
2590 2743 5.720371 ATGAAGTAGTAGCTAGCCATGAG 57.280 43.478 12.13 0.00 0.00 2.90
2603 2756 9.926158 CTGCTATTATCAGATCAATGAAGTAGT 57.074 33.333 0.00 0.00 33.54 2.73
2610 2763 9.096160 GGATGTACTGCTATTATCAGATCAATG 57.904 37.037 1.69 0.00 35.61 2.82
2626 2779 3.999229 CTTTCGTGAAGGATGTACTGC 57.001 47.619 0.00 0.00 0.00 4.40
2655 2808 5.588958 GGGGGAATTCTCTGATTTTCTTG 57.411 43.478 5.06 0.00 0.00 3.02
2688 2843 3.181496 GGCCGATGAATTCTCTGGTTTTC 60.181 47.826 7.05 0.00 0.00 2.29
2692 2847 0.181350 GGGCCGATGAATTCTCTGGT 59.819 55.000 7.05 0.00 0.00 4.00
2708 2863 6.455360 TCATGATGTCTTTTCTAATTGGGC 57.545 37.500 0.00 0.00 0.00 5.36
2740 2895 6.233434 CCAAAGAGGCTGCTCACAATATATA 58.767 40.000 0.00 0.00 0.00 0.86
2741 2896 5.068636 CCAAAGAGGCTGCTCACAATATAT 58.931 41.667 0.00 0.00 0.00 0.86
2742 2897 4.454678 CCAAAGAGGCTGCTCACAATATA 58.545 43.478 0.00 0.00 0.00 0.86
2743 2898 3.285484 CCAAAGAGGCTGCTCACAATAT 58.715 45.455 0.00 0.00 0.00 1.28
2744 2899 2.715046 CCAAAGAGGCTGCTCACAATA 58.285 47.619 0.00 0.00 0.00 1.90
2745 2900 1.542492 CCAAAGAGGCTGCTCACAAT 58.458 50.000 0.00 0.00 0.00 2.71
2746 2901 3.025924 CCAAAGAGGCTGCTCACAA 57.974 52.632 0.00 0.00 0.00 3.33
2747 2902 4.806936 CCAAAGAGGCTGCTCACA 57.193 55.556 0.00 0.00 0.00 3.58
2756 2911 1.276421 TCGGAAGAGAAGCCAAAGAGG 59.724 52.381 0.00 0.00 36.47 3.69
2757 2912 2.289072 TGTCGGAAGAGAAGCCAAAGAG 60.289 50.000 0.00 0.00 43.49 2.85
2758 2913 1.691976 TGTCGGAAGAGAAGCCAAAGA 59.308 47.619 0.00 0.00 43.49 2.52
2759 2914 2.072298 CTGTCGGAAGAGAAGCCAAAG 58.928 52.381 0.00 0.00 43.49 2.77
2760 2915 1.416401 ACTGTCGGAAGAGAAGCCAAA 59.584 47.619 0.00 0.00 43.49 3.28
2761 2916 1.048601 ACTGTCGGAAGAGAAGCCAA 58.951 50.000 0.00 0.00 43.49 4.52
2762 2917 0.318441 CACTGTCGGAAGAGAAGCCA 59.682 55.000 0.00 0.00 43.49 4.75
2763 2918 0.318762 ACACTGTCGGAAGAGAAGCC 59.681 55.000 0.00 0.00 43.49 4.35
2764 2919 2.869897 CTACACTGTCGGAAGAGAAGC 58.130 52.381 0.00 0.00 43.49 3.86
2765 2920 2.229062 TGCTACACTGTCGGAAGAGAAG 59.771 50.000 0.00 0.00 43.49 2.85
2766 2921 2.235891 TGCTACACTGTCGGAAGAGAA 58.764 47.619 0.00 0.00 43.49 2.87
2767 2922 1.905637 TGCTACACTGTCGGAAGAGA 58.094 50.000 0.00 0.00 43.49 3.10
2768 2923 2.724977 TTGCTACACTGTCGGAAGAG 57.275 50.000 0.00 0.00 43.49 2.85
2769 2924 3.006430 TGAATTGCTACACTGTCGGAAGA 59.994 43.478 0.00 0.00 38.16 2.87
2770 2925 3.325870 TGAATTGCTACACTGTCGGAAG 58.674 45.455 0.00 0.00 0.00 3.46
2771 2926 3.394674 TGAATTGCTACACTGTCGGAA 57.605 42.857 0.00 0.00 0.00 4.30
2772 2927 3.064207 GTTGAATTGCTACACTGTCGGA 58.936 45.455 0.00 0.00 0.00 4.55
2773 2928 2.805671 TGTTGAATTGCTACACTGTCGG 59.194 45.455 0.00 0.00 0.00 4.79
2774 2929 3.799035 GTGTTGAATTGCTACACTGTCG 58.201 45.455 2.49 0.00 45.68 4.35
2780 2935 6.472016 TGATAGGAAGTGTTGAATTGCTACA 58.528 36.000 0.00 0.00 33.03 2.74
2781 2936 6.985188 TGATAGGAAGTGTTGAATTGCTAC 57.015 37.500 0.00 0.00 33.03 3.58
2782 2937 7.283127 GGAATGATAGGAAGTGTTGAATTGCTA 59.717 37.037 0.00 0.00 34.44 3.49
2783 2938 6.096001 GGAATGATAGGAAGTGTTGAATTGCT 59.904 38.462 0.00 0.00 0.00 3.91
2784 2939 6.268566 GGAATGATAGGAAGTGTTGAATTGC 58.731 40.000 0.00 0.00 0.00 3.56
2785 2940 6.458751 CGGGAATGATAGGAAGTGTTGAATTG 60.459 42.308 0.00 0.00 0.00 2.32
2786 2941 5.590259 CGGGAATGATAGGAAGTGTTGAATT 59.410 40.000 0.00 0.00 0.00 2.17
2787 2942 5.104527 TCGGGAATGATAGGAAGTGTTGAAT 60.105 40.000 0.00 0.00 0.00 2.57
2788 2943 4.224147 TCGGGAATGATAGGAAGTGTTGAA 59.776 41.667 0.00 0.00 0.00 2.69
2789 2944 3.772572 TCGGGAATGATAGGAAGTGTTGA 59.227 43.478 0.00 0.00 0.00 3.18
2790 2945 4.137116 TCGGGAATGATAGGAAGTGTTG 57.863 45.455 0.00 0.00 0.00 3.33
2791 2946 4.837093 TTCGGGAATGATAGGAAGTGTT 57.163 40.909 0.00 0.00 0.00 3.32
2792 2947 4.837093 TTTCGGGAATGATAGGAAGTGT 57.163 40.909 0.00 0.00 0.00 3.55
2793 2948 5.368145 TCATTTCGGGAATGATAGGAAGTG 58.632 41.667 7.63 0.00 47.00 3.16
2794 2949 5.630415 TCATTTCGGGAATGATAGGAAGT 57.370 39.130 7.63 0.00 47.00 3.01
2803 2958 5.048782 TGTTCTTTCTGTCATTTCGGGAATG 60.049 40.000 2.40 2.40 45.31 2.67
2804 2959 5.070001 TGTTCTTTCTGTCATTTCGGGAAT 58.930 37.500 0.00 0.00 0.00 3.01
2805 2960 4.456535 TGTTCTTTCTGTCATTTCGGGAA 58.543 39.130 0.00 0.00 0.00 3.97
2806 2961 4.079980 TGTTCTTTCTGTCATTTCGGGA 57.920 40.909 0.00 0.00 0.00 5.14
2807 2962 4.829064 TTGTTCTTTCTGTCATTTCGGG 57.171 40.909 0.00 0.00 0.00 5.14
2808 2963 5.630680 CCAATTGTTCTTTCTGTCATTTCGG 59.369 40.000 4.43 0.00 0.00 4.30
2809 2964 5.117592 GCCAATTGTTCTTTCTGTCATTTCG 59.882 40.000 4.43 0.00 0.00 3.46
2810 2965 5.406477 GGCCAATTGTTCTTTCTGTCATTTC 59.594 40.000 4.43 0.00 0.00 2.17
2811 2966 5.299949 GGCCAATTGTTCTTTCTGTCATTT 58.700 37.500 4.43 0.00 0.00 2.32
2812 2967 4.262592 GGGCCAATTGTTCTTTCTGTCATT 60.263 41.667 4.39 0.00 0.00 2.57
2813 2968 3.259123 GGGCCAATTGTTCTTTCTGTCAT 59.741 43.478 4.39 0.00 0.00 3.06
2814 2969 2.627699 GGGCCAATTGTTCTTTCTGTCA 59.372 45.455 4.39 0.00 0.00 3.58
2815 2970 2.893489 AGGGCCAATTGTTCTTTCTGTC 59.107 45.455 6.18 0.00 0.00 3.51
2816 2971 2.962859 AGGGCCAATTGTTCTTTCTGT 58.037 42.857 6.18 0.00 0.00 3.41
2817 2972 3.070015 ACAAGGGCCAATTGTTCTTTCTG 59.930 43.478 17.39 0.00 37.61 3.02
2818 2973 3.308401 ACAAGGGCCAATTGTTCTTTCT 58.692 40.909 17.39 0.00 37.61 2.52
2819 2974 3.751479 ACAAGGGCCAATTGTTCTTTC 57.249 42.857 17.39 0.00 37.61 2.62
2820 2975 3.005367 CGTACAAGGGCCAATTGTTCTTT 59.995 43.478 25.28 7.75 41.08 2.52
2821 2976 2.556622 CGTACAAGGGCCAATTGTTCTT 59.443 45.455 25.28 6.62 41.08 2.52
2822 2977 2.159382 CGTACAAGGGCCAATTGTTCT 58.841 47.619 25.28 8.37 41.08 3.01
2823 2978 2.156098 TCGTACAAGGGCCAATTGTTC 58.844 47.619 25.28 20.08 41.08 3.18
2824 2979 2.279935 TCGTACAAGGGCCAATTGTT 57.720 45.000 25.28 13.02 41.08 2.83
2825 2980 2.159382 CTTCGTACAAGGGCCAATTGT 58.841 47.619 24.04 24.04 43.15 2.71
2826 2981 1.472480 CCTTCGTACAAGGGCCAATTG 59.528 52.381 16.21 16.21 33.79 2.32
2827 2982 1.353022 TCCTTCGTACAAGGGCCAATT 59.647 47.619 18.28 0.00 37.99 2.32
2828 2983 0.988832 TCCTTCGTACAAGGGCCAAT 59.011 50.000 18.28 0.00 37.99 3.16
2829 2984 0.766131 TTCCTTCGTACAAGGGCCAA 59.234 50.000 18.28 7.82 37.99 4.52
2830 2985 0.766131 TTTCCTTCGTACAAGGGCCA 59.234 50.000 18.28 6.11 37.99 5.36
2831 2986 1.162698 GTTTCCTTCGTACAAGGGCC 58.837 55.000 18.28 0.00 37.99 5.80
2832 2987 0.794473 CGTTTCCTTCGTACAAGGGC 59.206 55.000 18.28 11.17 37.99 5.19
2833 2988 1.270465 ACCGTTTCCTTCGTACAAGGG 60.270 52.381 18.28 10.09 37.99 3.95
2834 2989 1.796459 CACCGTTTCCTTCGTACAAGG 59.204 52.381 14.47 14.47 38.78 3.61
2835 2990 2.746269 TCACCGTTTCCTTCGTACAAG 58.254 47.619 0.00 0.00 0.00 3.16
2836 2991 2.886862 TCACCGTTTCCTTCGTACAA 57.113 45.000 0.00 0.00 0.00 2.41
2837 2992 3.507233 ACTATCACCGTTTCCTTCGTACA 59.493 43.478 0.00 0.00 0.00 2.90
2838 2993 4.102035 ACTATCACCGTTTCCTTCGTAC 57.898 45.455 0.00 0.00 0.00 3.67
2839 2994 4.672542 CGAACTATCACCGTTTCCTTCGTA 60.673 45.833 0.00 0.00 0.00 3.43
2840 2995 3.582780 GAACTATCACCGTTTCCTTCGT 58.417 45.455 0.00 0.00 0.00 3.85
2841 2996 2.597305 CGAACTATCACCGTTTCCTTCG 59.403 50.000 0.00 0.00 0.00 3.79
2842 2997 2.928116 CCGAACTATCACCGTTTCCTTC 59.072 50.000 0.00 0.00 0.00 3.46
2843 2998 2.354403 CCCGAACTATCACCGTTTCCTT 60.354 50.000 0.00 0.00 0.00 3.36
2844 2999 1.206371 CCCGAACTATCACCGTTTCCT 59.794 52.381 0.00 0.00 0.00 3.36
2845 3000 1.648504 CCCGAACTATCACCGTTTCC 58.351 55.000 0.00 0.00 0.00 3.13
2846 3001 1.004595 GCCCGAACTATCACCGTTTC 58.995 55.000 0.00 0.00 0.00 2.78
2847 3002 0.322322 TGCCCGAACTATCACCGTTT 59.678 50.000 0.00 0.00 0.00 3.60
2848 3003 0.539986 ATGCCCGAACTATCACCGTT 59.460 50.000 0.00 0.00 0.00 4.44
2849 3004 0.104304 GATGCCCGAACTATCACCGT 59.896 55.000 0.00 0.00 0.00 4.83
2850 3005 0.389391 AGATGCCCGAACTATCACCG 59.611 55.000 0.00 0.00 0.00 4.94
2851 3006 1.270358 GGAGATGCCCGAACTATCACC 60.270 57.143 0.00 0.00 0.00 4.02
2852 3007 1.412710 TGGAGATGCCCGAACTATCAC 59.587 52.381 0.00 0.00 34.97 3.06
2853 3008 1.788229 TGGAGATGCCCGAACTATCA 58.212 50.000 0.00 0.00 34.97 2.15
2854 3009 2.484889 GTTGGAGATGCCCGAACTATC 58.515 52.381 0.00 0.00 34.97 2.08
2855 3010 1.202533 CGTTGGAGATGCCCGAACTAT 60.203 52.381 0.00 0.00 34.97 2.12
2856 3011 0.174845 CGTTGGAGATGCCCGAACTA 59.825 55.000 0.00 0.00 34.97 2.24
2857 3012 1.079127 CGTTGGAGATGCCCGAACT 60.079 57.895 0.00 0.00 34.97 3.01
2858 3013 2.750888 GCGTTGGAGATGCCCGAAC 61.751 63.158 0.00 0.00 34.03 3.95
2859 3014 2.435938 GCGTTGGAGATGCCCGAA 60.436 61.111 0.00 0.00 34.03 4.30
2860 3015 2.739849 TTTGCGTTGGAGATGCCCGA 62.740 55.000 0.00 0.00 39.64 5.14
2861 3016 1.656818 ATTTGCGTTGGAGATGCCCG 61.657 55.000 0.00 0.00 39.64 6.13
2862 3017 0.532115 AATTTGCGTTGGAGATGCCC 59.468 50.000 0.00 0.00 39.64 5.36
2863 3018 1.474077 AGAATTTGCGTTGGAGATGCC 59.526 47.619 0.00 0.00 39.64 4.40
2864 3019 2.478539 GGAGAATTTGCGTTGGAGATGC 60.479 50.000 0.00 0.00 40.83 3.91
2865 3020 2.098117 GGGAGAATTTGCGTTGGAGATG 59.902 50.000 0.00 0.00 0.00 2.90
2866 3021 2.290896 TGGGAGAATTTGCGTTGGAGAT 60.291 45.455 0.00 0.00 0.00 2.75
2867 3022 1.073125 TGGGAGAATTTGCGTTGGAGA 59.927 47.619 0.00 0.00 0.00 3.71
2868 3023 1.533625 TGGGAGAATTTGCGTTGGAG 58.466 50.000 0.00 0.00 0.00 3.86
2869 3024 1.988293 TTGGGAGAATTTGCGTTGGA 58.012 45.000 0.00 0.00 0.00 3.53
2870 3025 2.810439 TTTGGGAGAATTTGCGTTGG 57.190 45.000 0.00 0.00 0.00 3.77
2891 3046 6.575162 AGGAAATATGCGTTGAGAGTTTTT 57.425 33.333 0.00 0.00 0.00 1.94
2892 3047 7.552687 TGATAGGAAATATGCGTTGAGAGTTTT 59.447 33.333 0.00 0.00 0.00 2.43
2893 3048 7.047891 TGATAGGAAATATGCGTTGAGAGTTT 58.952 34.615 0.00 0.00 0.00 2.66
2894 3049 6.582636 TGATAGGAAATATGCGTTGAGAGTT 58.417 36.000 0.00 0.00 0.00 3.01
2895 3050 6.161855 TGATAGGAAATATGCGTTGAGAGT 57.838 37.500 0.00 0.00 0.00 3.24
2896 3051 7.148507 GGAATGATAGGAAATATGCGTTGAGAG 60.149 40.741 0.00 0.00 0.00 3.20
2897 3052 6.650807 GGAATGATAGGAAATATGCGTTGAGA 59.349 38.462 0.00 0.00 0.00 3.27
2898 3053 6.652481 AGGAATGATAGGAAATATGCGTTGAG 59.348 38.462 0.00 0.00 0.00 3.02
2899 3054 6.427853 CAGGAATGATAGGAAATATGCGTTGA 59.572 38.462 0.00 0.00 0.00 3.18
2900 3055 6.427853 TCAGGAATGATAGGAAATATGCGTTG 59.572 38.462 0.00 0.00 0.00 4.10
2901 3056 6.533730 TCAGGAATGATAGGAAATATGCGTT 58.466 36.000 0.00 0.00 0.00 4.84
2902 3057 6.114187 TCAGGAATGATAGGAAATATGCGT 57.886 37.500 0.00 0.00 0.00 5.24
2903 3058 7.439157 TTTCAGGAATGATAGGAAATATGCG 57.561 36.000 0.00 0.00 0.00 4.73
2904 3059 9.017509 TCATTTCAGGAATGATAGGAAATATGC 57.982 33.333 0.00 0.00 47.00 3.14
2917 3072 6.973843 TGTTCTTTCTGTCATTTCAGGAATG 58.026 36.000 0.00 0.00 45.31 2.67
2918 3073 6.774656 ACTGTTCTTTCTGTCATTTCAGGAAT 59.225 34.615 0.00 0.00 33.19 3.01
2919 3074 6.122277 ACTGTTCTTTCTGTCATTTCAGGAA 58.878 36.000 0.00 0.00 36.25 3.36
2920 3075 5.684704 ACTGTTCTTTCTGTCATTTCAGGA 58.315 37.500 0.00 0.00 36.25 3.86
2921 3076 6.204359 CAACTGTTCTTTCTGTCATTTCAGG 58.796 40.000 0.00 0.00 36.25 3.86
2922 3077 6.183360 ACCAACTGTTCTTTCTGTCATTTCAG 60.183 38.462 0.00 0.00 36.85 3.02
2923 3078 5.652014 ACCAACTGTTCTTTCTGTCATTTCA 59.348 36.000 0.00 0.00 0.00 2.69
2924 3079 6.136541 ACCAACTGTTCTTTCTGTCATTTC 57.863 37.500 0.00 0.00 0.00 2.17
2925 3080 5.652014 TGACCAACTGTTCTTTCTGTCATTT 59.348 36.000 0.00 0.00 0.00 2.32
2926 3081 5.066505 GTGACCAACTGTTCTTTCTGTCATT 59.933 40.000 0.00 0.00 34.42 2.57
2927 3082 4.576463 GTGACCAACTGTTCTTTCTGTCAT 59.424 41.667 0.00 0.00 34.42 3.06
2928 3083 3.938963 GTGACCAACTGTTCTTTCTGTCA 59.061 43.478 0.00 0.00 0.00 3.58
2929 3084 3.938963 TGTGACCAACTGTTCTTTCTGTC 59.061 43.478 0.00 0.00 0.00 3.51
2930 3085 3.950397 TGTGACCAACTGTTCTTTCTGT 58.050 40.909 0.00 0.00 0.00 3.41
2931 3086 4.963276 TTGTGACCAACTGTTCTTTCTG 57.037 40.909 0.00 0.00 0.00 3.02
2932 3087 6.530019 AATTTGTGACCAACTGTTCTTTCT 57.470 33.333 0.00 0.00 0.00 2.52
2933 3088 6.255670 GGAAATTTGTGACCAACTGTTCTTTC 59.744 38.462 0.00 0.00 0.00 2.62
2934 3089 6.070824 AGGAAATTTGTGACCAACTGTTCTTT 60.071 34.615 0.00 0.00 0.00 2.52
2935 3090 5.422012 AGGAAATTTGTGACCAACTGTTCTT 59.578 36.000 0.00 0.00 0.00 2.52
2936 3091 4.956075 AGGAAATTTGTGACCAACTGTTCT 59.044 37.500 0.00 0.00 0.00 3.01
2937 3092 5.262588 AGGAAATTTGTGACCAACTGTTC 57.737 39.130 0.00 0.00 0.00 3.18
2938 3093 6.549364 TGATAGGAAATTTGTGACCAACTGTT 59.451 34.615 0.00 0.00 0.00 3.16
2939 3094 6.016276 GTGATAGGAAATTTGTGACCAACTGT 60.016 38.462 0.00 0.00 0.00 3.55
2940 3095 6.207417 AGTGATAGGAAATTTGTGACCAACTG 59.793 38.462 0.00 0.00 0.00 3.16
2941 3096 6.306987 AGTGATAGGAAATTTGTGACCAACT 58.693 36.000 0.00 0.00 0.00 3.16
2942 3097 6.575162 AGTGATAGGAAATTTGTGACCAAC 57.425 37.500 0.00 0.00 0.00 3.77
2943 3098 7.685481 TCTAGTGATAGGAAATTTGTGACCAA 58.315 34.615 0.00 0.00 0.00 3.67
2944 3099 7.252612 TCTAGTGATAGGAAATTTGTGACCA 57.747 36.000 0.00 0.00 0.00 4.02
2945 3100 7.987458 TCATCTAGTGATAGGAAATTTGTGACC 59.013 37.037 0.00 0.00 0.00 4.02
2946 3101 8.821894 GTCATCTAGTGATAGGAAATTTGTGAC 58.178 37.037 0.00 0.00 39.48 3.67
2947 3102 8.539544 TGTCATCTAGTGATAGGAAATTTGTGA 58.460 33.333 0.00 0.00 39.48 3.58
2948 3103 8.607459 GTGTCATCTAGTGATAGGAAATTTGTG 58.393 37.037 0.00 0.00 39.48 3.33
2949 3104 7.770897 GGTGTCATCTAGTGATAGGAAATTTGT 59.229 37.037 0.00 0.00 39.48 2.83
2950 3105 7.227512 GGGTGTCATCTAGTGATAGGAAATTTG 59.772 40.741 0.00 0.00 39.48 2.32
2951 3106 7.283329 GGGTGTCATCTAGTGATAGGAAATTT 58.717 38.462 0.00 0.00 39.48 1.82
2952 3107 6.463049 CGGGTGTCATCTAGTGATAGGAAATT 60.463 42.308 0.00 0.00 39.48 1.82
2953 3108 5.011125 CGGGTGTCATCTAGTGATAGGAAAT 59.989 44.000 0.00 0.00 39.48 2.17
2954 3109 4.341235 CGGGTGTCATCTAGTGATAGGAAA 59.659 45.833 0.00 0.00 39.48 3.13
2955 3110 3.889538 CGGGTGTCATCTAGTGATAGGAA 59.110 47.826 0.00 0.00 39.48 3.36
2956 3111 3.117625 ACGGGTGTCATCTAGTGATAGGA 60.118 47.826 0.00 0.00 39.48 2.94
2957 3112 3.004839 CACGGGTGTCATCTAGTGATAGG 59.995 52.174 6.45 0.00 39.48 2.57
2958 3113 3.004839 CCACGGGTGTCATCTAGTGATAG 59.995 52.174 11.91 0.00 39.48 2.08
2959 3114 2.956333 CCACGGGTGTCATCTAGTGATA 59.044 50.000 11.91 0.00 39.48 2.15
2960 3115 1.757118 CCACGGGTGTCATCTAGTGAT 59.243 52.381 11.91 0.00 39.48 3.06
2961 3116 1.182667 CCACGGGTGTCATCTAGTGA 58.817 55.000 11.91 0.00 0.00 3.41
2962 3117 0.895530 ACCACGGGTGTCATCTAGTG 59.104 55.000 5.60 5.60 32.98 2.74
2963 3118 3.376082 ACCACGGGTGTCATCTAGT 57.624 52.632 0.00 0.00 32.98 2.57
2973 3128 2.282674 TCGTCTAGCACCACGGGT 60.283 61.111 2.32 0.00 36.64 5.28
2974 3129 2.181021 GTCGTCTAGCACCACGGG 59.819 66.667 2.32 0.00 36.64 5.28
2975 3130 1.443872 GTGTCGTCTAGCACCACGG 60.444 63.158 2.32 0.00 36.64 4.94
2976 3131 4.148230 GTGTCGTCTAGCACCACG 57.852 61.111 0.00 0.00 37.36 4.94
2992 3147 0.834612 TTCTTTCTGTCACCACGGGT 59.165 50.000 0.00 0.00 35.62 5.28
2993 3148 1.226746 GTTCTTTCTGTCACCACGGG 58.773 55.000 0.00 0.00 0.00 5.28
2994 3149 1.867233 CTGTTCTTTCTGTCACCACGG 59.133 52.381 0.00 0.00 0.00 4.94
2995 3150 2.550978 ACTGTTCTTTCTGTCACCACG 58.449 47.619 0.00 0.00 0.00 4.94
2996 3151 3.065371 CCAACTGTTCTTTCTGTCACCAC 59.935 47.826 0.00 0.00 0.00 4.16
2997 3152 3.278574 CCAACTGTTCTTTCTGTCACCA 58.721 45.455 0.00 0.00 0.00 4.17
2998 3153 3.279434 ACCAACTGTTCTTTCTGTCACC 58.721 45.455 0.00 0.00 0.00 4.02
2999 3154 3.938963 TGACCAACTGTTCTTTCTGTCAC 59.061 43.478 0.00 0.00 0.00 3.67
3000 3155 3.938963 GTGACCAACTGTTCTTTCTGTCA 59.061 43.478 0.00 0.00 0.00 3.58
3001 3156 3.938963 TGTGACCAACTGTTCTTTCTGTC 59.061 43.478 0.00 0.00 0.00 3.51
3002 3157 3.950397 TGTGACCAACTGTTCTTTCTGT 58.050 40.909 0.00 0.00 0.00 3.41
3003 3158 4.963276 TTGTGACCAACTGTTCTTTCTG 57.037 40.909 0.00 0.00 0.00 3.02
3004 3159 7.639113 TTATTTGTGACCAACTGTTCTTTCT 57.361 32.000 0.00 0.00 0.00 2.52
3005 3160 8.871686 ATTTATTTGTGACCAACTGTTCTTTC 57.128 30.769 0.00 0.00 0.00 2.62
3006 3161 9.965824 CTATTTATTTGTGACCAACTGTTCTTT 57.034 29.630 0.00 0.00 0.00 2.52
3007 3162 9.349713 TCTATTTATTTGTGACCAACTGTTCTT 57.650 29.630 0.00 0.00 0.00 2.52
3008 3163 8.784043 GTCTATTTATTTGTGACCAACTGTTCT 58.216 33.333 0.00 0.00 0.00 3.01
3009 3164 7.744715 CGTCTATTTATTTGTGACCAACTGTTC 59.255 37.037 0.00 0.00 0.00 3.18
3010 3165 7.227910 ACGTCTATTTATTTGTGACCAACTGTT 59.772 33.333 0.00 0.00 0.00 3.16
3011 3166 6.708949 ACGTCTATTTATTTGTGACCAACTGT 59.291 34.615 0.00 0.00 0.00 3.55
3012 3167 7.015289 CACGTCTATTTATTTGTGACCAACTG 58.985 38.462 0.00 0.00 0.00 3.16
3013 3168 6.932400 TCACGTCTATTTATTTGTGACCAACT 59.068 34.615 0.00 0.00 31.93 3.16
3014 3169 7.013529 GTCACGTCTATTTATTTGTGACCAAC 58.986 38.462 11.18 0.00 46.35 3.77
3015 3170 7.124347 GTCACGTCTATTTATTTGTGACCAA 57.876 36.000 11.18 0.00 46.35 3.67
3016 3171 6.715344 GTCACGTCTATTTATTTGTGACCA 57.285 37.500 11.18 0.00 46.35 4.02
3019 3174 6.592607 GGGAAGTCACGTCTATTTATTTGTGA 59.407 38.462 0.00 0.00 34.27 3.58
3020 3175 6.594159 AGGGAAGTCACGTCTATTTATTTGTG 59.406 38.462 0.00 0.00 0.00 3.33
3021 3176 6.708285 AGGGAAGTCACGTCTATTTATTTGT 58.292 36.000 0.00 0.00 0.00 2.83
3022 3177 7.549488 AGAAGGGAAGTCACGTCTATTTATTTG 59.451 37.037 0.00 0.00 36.36 2.32
3023 3178 7.621796 AGAAGGGAAGTCACGTCTATTTATTT 58.378 34.615 0.00 0.00 36.36 1.40
3024 3179 7.184067 AGAAGGGAAGTCACGTCTATTTATT 57.816 36.000 0.00 0.00 36.36 1.40
3025 3180 6.793505 AGAAGGGAAGTCACGTCTATTTAT 57.206 37.500 0.00 0.00 36.36 1.40
3026 3181 6.888632 ACTAGAAGGGAAGTCACGTCTATTTA 59.111 38.462 6.67 0.00 39.10 1.40
3027 3182 5.715753 ACTAGAAGGGAAGTCACGTCTATTT 59.284 40.000 6.67 0.00 39.10 1.40
3028 3183 5.262804 ACTAGAAGGGAAGTCACGTCTATT 58.737 41.667 6.67 0.00 39.10 1.73
3029 3184 4.857679 ACTAGAAGGGAAGTCACGTCTAT 58.142 43.478 6.67 0.00 39.10 1.98
3030 3185 4.298103 ACTAGAAGGGAAGTCACGTCTA 57.702 45.455 6.15 6.15 38.91 2.59
3031 3186 3.157750 ACTAGAAGGGAAGTCACGTCT 57.842 47.619 4.43 4.43 40.98 4.18
3032 3187 3.005578 ACAACTAGAAGGGAAGTCACGTC 59.994 47.826 0.00 0.00 0.00 4.34
3033 3188 2.963782 ACAACTAGAAGGGAAGTCACGT 59.036 45.455 0.00 0.00 0.00 4.49
3034 3189 3.662247 ACAACTAGAAGGGAAGTCACG 57.338 47.619 0.00 0.00 0.00 4.35
3035 3190 5.464030 TGTACAACTAGAAGGGAAGTCAC 57.536 43.478 0.00 0.00 0.00 3.67
3036 3191 5.568825 GCATGTACAACTAGAAGGGAAGTCA 60.569 44.000 0.00 0.00 0.00 3.41
3037 3192 4.870991 GCATGTACAACTAGAAGGGAAGTC 59.129 45.833 0.00 0.00 0.00 3.01
3038 3193 4.286032 TGCATGTACAACTAGAAGGGAAGT 59.714 41.667 0.00 0.00 0.00 3.01
3039 3194 4.832248 TGCATGTACAACTAGAAGGGAAG 58.168 43.478 0.00 0.00 0.00 3.46
3040 3195 4.832248 CTGCATGTACAACTAGAAGGGAA 58.168 43.478 0.00 0.00 0.00 3.97
3041 3196 3.369471 GCTGCATGTACAACTAGAAGGGA 60.369 47.826 0.00 0.00 0.00 4.20
3042 3197 2.939103 GCTGCATGTACAACTAGAAGGG 59.061 50.000 0.00 0.00 0.00 3.95
3043 3198 3.620374 CAGCTGCATGTACAACTAGAAGG 59.380 47.826 0.00 0.00 0.00 3.46
3044 3199 4.248859 ACAGCTGCATGTACAACTAGAAG 58.751 43.478 15.27 0.00 0.00 2.85
3045 3200 4.271696 ACAGCTGCATGTACAACTAGAA 57.728 40.909 15.27 0.00 0.00 2.10
3046 3201 3.961480 ACAGCTGCATGTACAACTAGA 57.039 42.857 15.27 0.00 0.00 2.43
3047 3202 5.351458 TGATACAGCTGCATGTACAACTAG 58.649 41.667 15.27 0.00 38.43 2.57
3048 3203 5.337578 TGATACAGCTGCATGTACAACTA 57.662 39.130 15.27 0.00 38.43 2.24
3049 3204 4.206477 TGATACAGCTGCATGTACAACT 57.794 40.909 15.27 0.00 38.43 3.16
3050 3205 5.268544 CAATGATACAGCTGCATGTACAAC 58.731 41.667 15.27 0.00 38.43 3.32
3051 3206 4.201940 GCAATGATACAGCTGCATGTACAA 60.202 41.667 15.27 1.21 38.43 2.41
3052 3207 3.313249 GCAATGATACAGCTGCATGTACA 59.687 43.478 15.27 0.00 38.43 2.90
3053 3208 3.605461 CGCAATGATACAGCTGCATGTAC 60.605 47.826 15.27 0.00 38.43 2.90
3054 3209 2.545106 CGCAATGATACAGCTGCATGTA 59.455 45.455 15.27 8.28 39.85 2.29
3055 3210 1.332686 CGCAATGATACAGCTGCATGT 59.667 47.619 15.27 6.21 34.39 3.21
3056 3211 1.332686 ACGCAATGATACAGCTGCATG 59.667 47.619 15.27 5.19 34.39 4.06
3057 3212 1.600957 GACGCAATGATACAGCTGCAT 59.399 47.619 15.27 6.32 34.39 3.96
3058 3213 1.009078 GACGCAATGATACAGCTGCA 58.991 50.000 15.27 0.00 34.39 4.41
3059 3214 1.009078 TGACGCAATGATACAGCTGC 58.991 50.000 15.27 0.00 0.00 5.25
3060 3215 3.957671 ATTGACGCAATGATACAGCTG 57.042 42.857 13.48 13.48 32.39 4.24
3070 3225 9.691362 AAGAAACTTAATAAACATTGACGCAAT 57.309 25.926 0.00 0.09 34.04 3.56
3071 3226 9.176181 GAAGAAACTTAATAAACATTGACGCAA 57.824 29.630 0.00 0.00 0.00 4.85
3072 3227 8.564574 AGAAGAAACTTAATAAACATTGACGCA 58.435 29.630 0.00 0.00 0.00 5.24
3073 3228 8.950403 AGAAGAAACTTAATAAACATTGACGC 57.050 30.769 0.00 0.00 0.00 5.19
3105 3260 9.927668 ATTTTGGAAAGACGAATACATTGATTT 57.072 25.926 0.00 0.00 0.00 2.17
3106 3261 9.573133 GATTTTGGAAAGACGAATACATTGATT 57.427 29.630 0.00 0.00 0.00 2.57
3107 3262 8.739039 TGATTTTGGAAAGACGAATACATTGAT 58.261 29.630 0.00 0.00 0.00 2.57
3108 3263 8.105097 TGATTTTGGAAAGACGAATACATTGA 57.895 30.769 0.00 0.00 0.00 2.57
3109 3264 8.741101 TTGATTTTGGAAAGACGAATACATTG 57.259 30.769 0.00 0.00 0.00 2.82
3110 3265 9.757227 TTTTGATTTTGGAAAGACGAATACATT 57.243 25.926 0.00 0.00 0.00 2.71
3111 3266 9.191995 GTTTTGATTTTGGAAAGACGAATACAT 57.808 29.630 0.00 0.00 0.00 2.29
3112 3267 7.377397 CGTTTTGATTTTGGAAAGACGAATACA 59.623 33.333 0.00 0.00 0.00 2.29
3113 3268 7.588488 TCGTTTTGATTTTGGAAAGACGAATAC 59.412 33.333 0.00 0.00 34.57 1.89
3114 3269 7.640852 TCGTTTTGATTTTGGAAAGACGAATA 58.359 30.769 0.00 0.00 34.57 1.75
3115 3270 6.500041 TCGTTTTGATTTTGGAAAGACGAAT 58.500 32.000 0.00 0.00 34.57 3.34
3116 3271 5.881447 TCGTTTTGATTTTGGAAAGACGAA 58.119 33.333 0.00 0.00 34.57 3.85
3117 3272 5.487153 TCGTTTTGATTTTGGAAAGACGA 57.513 34.783 0.00 0.00 35.04 4.20
3118 3273 4.146443 GCTCGTTTTGATTTTGGAAAGACG 59.854 41.667 0.00 0.00 0.00 4.18
3119 3274 5.040635 TGCTCGTTTTGATTTTGGAAAGAC 58.959 37.500 0.00 0.00 0.00 3.01
3120 3275 5.255710 TGCTCGTTTTGATTTTGGAAAGA 57.744 34.783 0.00 0.00 0.00 2.52
3121 3276 5.119125 GGATGCTCGTTTTGATTTTGGAAAG 59.881 40.000 0.00 0.00 0.00 2.62
3122 3277 4.987912 GGATGCTCGTTTTGATTTTGGAAA 59.012 37.500 0.00 0.00 0.00 3.13
3123 3278 4.555262 GGATGCTCGTTTTGATTTTGGAA 58.445 39.130 0.00 0.00 0.00 3.53
3124 3279 4.173036 GGATGCTCGTTTTGATTTTGGA 57.827 40.909 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.