>input_sequence_59387
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--------------------------------------------------------ATGTCGTCGAGGCAAGACCAGCGC
GAGGCGAGGGCCGAGGCCGACGCTCGCCGCGCGGCGGACGAGATCGCGCGCGCGCGGGACGAGCGGGTGATGCAGGCGGA
GATGGACGCGCGACGCGCGGCGGACGAGATCGCGCGCGCCCGCGCGGACCGCGAGCACGGCGCACTGGGCGGCGGTGCCT
ACGCCGAGCACCCGAGCGGCGGCGG---CGGCATCCTGGGGAGCATGCAGGAGGGCGCCAAGTCCCTGGCCAGCGCGGTC
GGCCGCACGTTCGGCGGCGCCAAGGACACCGCCGCCGACAAGACCTACCAGGCGGCGGACGCCACCGGGAACACGATGGG
CGAGTACAAGGACTACACCGCCGAGAAGGCCAAGGAGACCAACGACAGCGTCGCGCACAAGACGAGCGAGACCGCGGAGG
CCACCAGGAACAAGCTCGGCGAGGCCAAGGACTGCACCGTCGAGAAGGCGACGGAGGCCAAGGACACCGTGGCGCAGAAG
ACGAACGAGACCGCTGAGGCTACCAAGAACAAGCTGGGAGAGTACAAGGACGCCTTGGCCGGGAAGACGCAGGAGGCCAA
GGACAGCACCATGCAGAAGGCCCACCAGACGAAGGACGCCGCCGCCGAGAAGGCGAGGCAGGCCAAGGACGTGACACAGC
AGAAGGCCGGCGAGTACACGGACGCCACCAAGGGGACCGCGCAGGAAGCCAGGGACAGGTCCATGGCGACCACGCAGACC
---------------------------------CACGATGCCGATAGGTATGCCA--CTCAAGTCTCGACTCATTAACTT
GCACACAAGTCAAACTAGGACTCACATCGTACACATTTTTCGTGTTGATGCGCACGCAGGGGTCAGCAAGGGACCGGTCT
GTTCGGGGCGCTGGGCAACATGACGGGCGCGATCAAGGAGAAGCTGACGGTTGGCTCGGGCACGCAGCAGCACGACGCCG
GAGGGCACGGCCTCCGGCTGGGCAGCGAGGACGAGCGCGCGGTGAAGGAGCGCGCGGCGGAGAAGGCGGCGTCCGTGTAC
TTCGAGGAGAAGGACCGGCTGGCCAAGGAGCGCGCGGCGGAGCGGGTGGACAAGTGCGTTGAGAAGTGCGTGGAAGGGTG
CGTCGGCTCCTCCTGCGCCCACCGCAAGGGCAAGATGTGA----------------------------------------
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>chr4A_1_TraesCS4A01G129100
GGTGTGATCGAGTCCTGTGTAAGGATGCATTTTCCTAGCTGTTCCTTCTTTTTAATAAAAGGGGGCGGGG--TAACTCCT
ATTGTTCAAAT-AAAATATATGTTAAACATTTTTCAAAAATATATGATGT--ACATTTTTCAAATATATATTTTTGAACA
TATTTCTTAGTATGTGTTAAAAGTTTTTCAAATACACGTTGAACATATTTTTAATTGCATGAAACTTTTTAAAACGTAGT
GAACATTTTTTTACACCATGTTAATTTTTTTAAATGTGATGAGCACATTTTAAAAATGCGTGAATATTT-TTTGAAGTGT
CACGTACATTTTTTTTGTTGGTACAAAACATTGTCTGTTTATTACCTGAACATCTGTTTTGCATTATATAAATATATTTA
TTTAATATCATGAACATTCTTTTGGAACATGTGAATATTTTTAATGTATAT---TTTGAATGCCCATCAACACCTTCTAA
AAGTTGCGCGAACATTCTTTTAGCACTACATAAACATTTTAAATATAAATATTAATGT-TTAGAATATTTGAAAATACAA
ATAAAATTAAAAAGAAGGAAATCAAAACAAAAGGCGATCAAAGGGAAGGGAAGGAAGCAGCGTCACATACTGCTAAGTTT
CACGCCCACATTAAGCGACACACAGTCGCTCCCTGCAATCCTATCCACACAC--TCACTG----CGCACGCACTTCCCCG
TACCATCCACAAGGCAACAGTAGAAGCCCATGGAAGCAGCTCAGCGACGACGTCGCCTCCCCCCGGAGGCACGTGTCCGC
TTCAAACGCATGTGTCAGCAGGCCCTGTCTTCCAACACGAGGCACACGCGTCCACCTCCCAGACGTACGTGTCACCCTCG
CATTACTCGCCGAGGAGTATATACACACTTTCACAAACGCTAGCTCAGTCACTTGTGTACTGCAACACTACAGCCAACAC
TACAGCACTAGCACGAGCGAGCAAGTTCCAGAGAAGTTCGACCACAGCGCGCGACCATGTCGTCGAGGCAAGACCAGCGC
GAGGCGAGGGCCGAGGCCGACGCTCGCCGCGCGGCGGACGAGATCGCGCGCGCGCGGGACGAGCGGGTGATGCAGGCGGA
GATGGACGCGCGACGCGCGGCGGACGAGATCGCGCGCGCCCGCGCGGACCGCGAGCACGGCGCACTGGGCGGCGGTGCCT
ACGCCGAGCACCCGAGCGGCGGCGG---CGGCATCCTGGGGAGCATGCAGGAGGGCGCCAAGTCCCTGGCCAGCGCGGTC
GGCCGCACGTTCGGCGGCGCCAAGGACACCGCCGCCGACAAGACCTACCAGGCGGCGGACGCCACCGGGAACACGATGGG
CGAGTACAAGGACTACACCGCCGAGAAGGCCAAGGAGACCAACGACAGCGTCGCGCACAAGACGAGCGAGACCGCGGAGG
CCACCAGGAACAAGCTCGGCGAGGCCAAGGACTGCACCGTCGAGAAGGCGACGGAGGCCAAGGACACCGTGGCGCAGAAG
ACGAACGAGACCGCTGAGGCTACCAAGAACAAGCTGGGAGAGTACAAGGACGCCTTGGCCGGGAAGACGCAGGAGGCCAA
GGACAGCACCATGCAGAAGGCCCACCAGACGAAGGACGCCGCCGCCGAGAAGGCGAGGCAGGCCAAGGACGTGACACAGC
AGAAGGCCGGCGAGTACACGGACGCCACCAAGGGGACCGCGCAGGAAGCCAGGGACAGGTCCATGGCGACCACGCAGACC
---------------------------------CACGATGCCGATAGGTATGCCA--CTCAAGTCTCGACTCATTAACTT
GCACACAAGTCAAACTAGGACTCACATCGTACACATTTTTCGTGTTGATGCGCACGCAGGGGTCAGCAAGGGACCGGTCT
GTTCGGGGCGCTGGGCAACATGACGGGCGCGATCAAGGAGAAGCTGACGGTTGGCTCGGGCACGCAGCAGCACGACGCCG
GAGGGCACGGCCTCCGGCTGGGCAGCGAGGACGAGCGCGCGGTGAAGGAGCGCGCGGCGGAGAAGGCGGCGTCCGTGTAC
TTCGAGGAGAAGGACCGGCTGGCCAAGGAGCGCGCGGCGGAGCGGGTGGACAAGTGCGTTGAGAAGTGCGTGGAAGGGTG
CGTCGGCTCCTCCTGCGCCCACCGCAAGGGCAAGATGTGAGCGGCCGGGCGTCCCACGTGACCGACCGCGGGCGCGTCTT
CGGTGCGACGTGCACACGTATCGCGTTCTCGTGCCATCCATGCCGTCACTCCGAGCATGGCGGCGACAATAAACTTTTAA
CTCCTAGTGGAGCTCCAGTAGAACCTTCGTTTTCAATTTCCTTTTT----------------------------------
-----------------------ACTTTTTTTGAGGATCAAGTTCCTTTTACTACTGCCTTTGTCTAAGTA---GTGTGT
GCGTCCCTTAGTTTGGTGAATC-GTAAATGCTCTACTGCTTTGTTTTACAATCTCCGGTGTCTT---AGTACGAGTTTTT
GCATGCCCTGTGTGTACTGTCTGCGTGAGTCTGGCGCCTCGTATTGGT--------------------------------
--GTCTGTCTACCTCAGGAGTCGAGACTAGTCTACGCGTGTGTGTGTGTTGTGTGCACCGAGGCGTGCACGATCGGTATT
TTTCCTTTAGGGAGGGGATGCCCTCATGGCTAGCTACTACTTCATTGATCTGATAATAGCAGTACATCCTTCACGAAAGG
AGCTTACCAAGAAAATCAGAGAATTCCCCCCTGC--AAAAAAGAAAACCAGAGAATTCATCGGCCCAATTAGAAAAGACA
TCATGATCATAAGCTATATATTGTGAGCAGCCTCTTTGGCTTCTCTTCCGACAGTGTAGCAATTCAACACTTCCTATCAT
TCCCGAAATGACAGAAAGAACAATTGGCCCTTGTACGAAGGAAACGGTGATAGTTCGGGCATCTCCAACGCAAATTCTCC
CAAAAAAAAACTCTCAACGCATATTTCCTATCATTCCTGAAATGACAGAAAGAACAGTTGGTCACAAATTTCCTATCACT
AGATGACACCCGTGGTGCTAGACGACACCCGTGGTGACAGAAAGAACAGTTGGTCACAAATAAATAGACGTGACTTCCCT
TCTAGTTGTACATGCAGCTGTATCATTGCGTCAATGTTTATTAAGTTTCTTCTATCAATAAATCAATGTATTCGTCTTTC
CAAAATCAAAACGAGCATCC
>chr4D_1
GGTGTGATTGAGTCCTATGTAAGGATGCATTTTCCTGGTTGTTCCTT-TTTCTAATAAAAGGGGCGGGGG--TAACTCCT
ATTGCTCAAATAAAAATATACGTTAAACATTTTTCATT-----------------TTTTTTAAATATATGTTTTTGAACA
TTTTTCTGAGTACGTATTAAAAGTTTTTCACATACACGTTGACCATTTTTTTAATTGCACAAAACTTTTTAAAATGTAGT
GAACATTTTTTAT--ATGGTGTTAATTTTTAAAATGTCCTGAGCATATTTTTGAAATGCGTGAATATTTGTTTGAAGTGT
CACGTATATTTTATTTGTTTGTACAAAGCATTATTTTTCTATTACCTCAACATTAGTTTTACATTGTATAAATATATTTT
CTAAATATCATGAACATTTTTTTGGAACATGTGAATATTTTTAATGTATATTTATTTGAATGCCCATCAACAACTTCTAA
AAGTTGCGCGAACATTCTTTTGACACTGCATAAACATTTTAAATATAAATATTCATACCTTAGAATATTTCAGAATACAA
ATAAAATTAAAAAGAAAGAAATCAAAACAAACAGCGATCAAAGGGAAGGGAAGGAAGCATCGTCACATACAGCTAAGTTT
CACCT-CACATTAAGCGAGACACAGTCGCTCCCTGCAATCCTATCCACACAC--TCACTACTATCGCACGCACTTCCCCG
TACCATCCACAAGGCAACAGTAGAAGCCCATGGAAGCAGCTCAGCGACGACGTCGCCTCCCCCCGGAGGCACGTGTCCGC
TTCGAACGCATGTGTCAGCAAGCCCTGTCTTCCAACACGAGGCACACGCGTCCACCTCCCGGACGTACGTGTCACCCTCG
CATTACTCGCCGAGGAGTATATACACACTTGCCCAAACGCTAGCTCACTCACTTGTGTACTGCAACACTACAGCCAACGC
TACAGCACCAGCACGAGCGAGCAAGTTCCAGAGAAGTTCAACCACAGCGCGCGACCATGTCGTCGAGGCAGGACCAGCGT
GAGGCGAGGGCCGAGGCCGACGCTCGCCGCGCGGCGGACGAGATCGCGCGCGCGCGGGACGAGCGGGTGATGCAGGCGGA
GATGGACGCGCGACGCGCGGCGGACGAGATCGCGCGCGCCCGCGCGGACCGCGAGCACGGCGCACTGGGCGGCGGTGCCT
ACGCCGAGCACCCGAGCGGCGGCGTCGGCGGCATCCTGGGGAGCATGCAGGAGGGCGCCAAGTCCCTGGCCAGCGCGGTT
GGCCGCACGTTCGGCGGCGCCAAGGACACCGCCGCAGACAAGAGCTACCAGGCGGCGGACGCCACCGGGAACAAGCTGGG
CGAGTTCAAGGACTACACCGCCGAGAAGGCCAAGGAGAGCAACGACAGCGTCGCGCACAAGACGAGCGAGACGGCGGAGG
CCACCAGGAACAAGCTCGGCGAGGCCAAGGACTACACCGTCGAGAAGGCGACGGAAGCCAAGGACACCGTGGCGCAGAAG
ACGAGCGAGACCGCTGAGGCTACCAAGAACAAGCTGGGAGAGTACAAGGACGCCTTGGCCGGGAAGACGCAGGAGGCCAA
GGACACCACCATGCAGAAGGCCCAGCAGACGAAGGACGCCGCCGCCGAGAAGGCGAGGCAAGCCAAGGACGTGACACAGC
AGAAAGCCGGCGTGTACACCGACGCCACCAAGGGGACCGCGCAGGAAGCCAGGGACAGGACCATGGCGACCACGCAGACC
---------------------------------CACGATGCCGATGGGTATGCCACTCTCAAGTCTCAACTCATTAACTT
GCACACAAGTCAAACTAGGACTTA---CATACACATTTTACGTGTTGATGCGCACGCAGGGGTCAGCAAGGGACCGGTCT
GTTCGGGGCGCTGGGCAACATGACGGGCGCGATCAAGGAGAAGCTGACGGTTGGCTCGGGCACGCAGCAGCACGACGCCG
GATGGCACGGCCTCCGGCTGGGCGACGAGGACGAGCGCGCGGTGAAGGAGCGCGCGGCGGAGAAGGCGGCGTCCGTCTAC
TTCGAGGAGAAGGACCGGCTGGCCAAGGAGCGCGCGGCGGAGCGGGTGGACAAATGCGTCGAGAAGTGCGTGGAAGGGTG
CGCCGGCTCCTCCTGCGCCCACCGCAAGGGCAAGATGTGAGCGGCCGGGCGTCCCACGTGACCGACCGCGGGCGCGTCCT
CGGTGCGACGTGCACACGTATCGCGTTCTCGTGCCATCCATGCCGTCACTCCGAGCATGGCGGCGACAATAAACTTT-AA
CTCCTAGTGGAGGTCCAGTAGAGCCTTCGTTTTCAAGTTTCTTTTACTACCACCTTTTGTCTAAGTAGTGTAGTGTGTGC
GCGTCCCTTAGTTTGAATCCATAAATGTCCTTCGGTTTCAAGTTTCTTTTACTACCACCTTTTGTCTAAGTGGTGTGTGT
TCGTCCCTTAGTTTGGTGAATCCGTAAATGCTCTACTGCTTTGTTTTAGAATCTCCGGTGTCTTCGTATACC----TTTT
GCATGACCTGTGTGTACTGTCTGCGTGAGTCTGGCGTCTCGTATTGGT--------------------------------
--GTCTGTCTACCTCAGGACTAGTCTAC-----------GTGTGTGTGTTGTGTGCACCGAGGCGTACACATCCATATTT
TTTCCTTTAGCGAGGGGATGCCGTCATGGCTACTG-------TATTGATCTGATAATATCAGTACATCCTTCACAAAAGG
AGCTTACAAAGAAAATCAGAGAATTCCCCCCTGC--AAAAAAAAAACCCAGAGAATTCATCGACCCAACTAGAAAAGACA
TCATGATCATAAGCGTAT--------------------------------------------------------------
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>chr4B_1
GGTCTGATTGAGTCCTGTGTAAGGATGCATTTTCCTAGTTGTTCCTT-TTTCTAATAAAAGAGGGCGGGGGGTAACTCCT
ATTGTTCAAATAAAAATATACGTTAAACATTTTTCAAAAATATAAGAAGTACACATTTTTCAAATATATGTTTTTGAACA
TTTTTCTGAGTACGTATTAAAAGTTTTTCACATAAACGTTGAACATTTTTTTATTTGCACAAAACTTTTTAAAACATAGT
GAACATTTTTTTCACATGGTGTTATTTTTTAAAATGTCATGAGAGTATTTTTGAAATGCGTGAATATTTGTTTGAAGTGT
CACGTATATTTTATTTGTTTGTACAAAACATTGTTTTTCTATTATCTCAACATTTGTTTTACATTGTATAAATATATTTT
CTAAATATCATGAAC-TTTTTTTGGAACATGTGAATATTTTTAATGTATATTTATTTGAATG-CCATCAACAACTTCTAA
AAGTTGCGCGAACATTCTTTTGACACTGCATAAACATTTTAAATATAAATATTCATATCTTAGAATATTTCAGAATACAA
ATAAAATTAAAAAGAAAGAAATCAAAACAAACAGCGATCAAAGGGAAGG-----AAGCAGCGTCGCATACATCTAAGTTT
CACCT-CACATTAAGCGAGACACAGTTGCTCCCTGCAATCCTATCCACACACACTCACTACTATCGCACGCACTTCCCCG
TACCATCCACAAGGCAACAGTAGAAGCCCATGGAAGCAGCTCAGCGACGACGTCGCCTCCACCCGGAGGCACGTGTCCGC
TTCAAACGCATGTGTCAGCAAGCCCTGTCTTCCAACACGAGGCACACGCGTCCACCTCCCAGACCTACGTGTCACCCTCG
CATTACTCGCCGGGGAATATATACACACTTGCACAAACGCTAGCTCACTCACTTGTGTACTGCAACACTACAACCAACAC
TACAGCACCAGCACGAGCGAGCAAGTTCCAGAGAAGTTCAACCACAGCGCGCGACCATGTCGTCGAGGCAGGACCAGCGT
GAGGCGAGGGCCGAGGCCGACGCTCGCCGCGCGGCGGACGAGATCGCGCGCGCGCGGGACGAGCGGGTGATGCAGGCGGA
GATGGACGCGCGACGCGCGGCGGATGAGATCGCGCGCGCCCGCGCGGATCGCGAGCACGGCGCACTGGGCGGCGGTGCCT
ACGCCGAGCACCCGAGCGGCGGCGGCGGCGGCATCCTGGGGAGCATGCAGGAGGGCGCCAAGTCCCTGGCAAGCGCGGTT
GGCCGCACGTTCGGCGGCGCCAAGGACACCGCCGCAGACAAGACCTACCAGGCGGCGGACGCCACCGGGAACAAGCTCGG
CGAGTACAAGGACTACACCGCCGAGAAGGCCAAGGAGACCAACGACAGTGTCGCGCACAAGACGAGCGAGACGGCGGAGG
CCACCAGGAACAAGCTTGGCGAGGCCAAGGACTACACCGTCGAGAAGGCGACGGAGGCCAAGGACACCGTGGCGCAGAAG
ACGAGTGAGACCGCTGAGGCTACCAAGAACAAGCTGGGAGAGTACAAGGACGCCTTGGCTGGGAAGACGCAGGAGGCCAA
GGACACCACCATGCAGAAGGCCCAGCAGACGAAGGACGCCGCCGCCGAGAAGGCGAGGCAGACCAAGGACGTGACACAGC
AGAAGGCGGGCGAGTACACGGACGCCACCAAGGGGACCGCGCAGGAAGCTAGGGACAGGACCATGGCGACCACGCAGACC
GCCGCCGACAAGGCAAGGGAGACGGCCGGCACCCACGATGCCGATAGGTATGCCACTCTCAAGTCTCAACTCATTAACTT
GCACAAAAGTCAAACTAGGACTTA---CGTACACATTTGACGTGTTGATGCGCACGCAGGGGTCAGCAAGGGACCGGTCT
GTTCGGGGCGCTGGGCAACATGACGGGCGCGATCAAGGAGAAGCTGACGGTTGGCTCAGGCACGCAGAAGCACGACGCTG
GAGGGCACGGCCTCCGGCTGGGCGACGAGGACGAGCGCGCGGTGAAGGAGCGCGCGGCGGAGAAGGCTGCGTCCGTCTAC
TTCGAGGAGAAGGACCGGCTGGCCAAGGAGCGCGCGGCGGAGCGGGTGGACAAATGCGTCGAGAAGTGCGTGGAAGGGTG
CGCCGGCTCGTCCTGCGCGCACCGCAAGGGCAAGATGTGAGCGGCCGGGCTTCCCACGTGACCGACCGCGGGCGCGTCTT
CGGTGCGACGTGCACACGTATCGCGTTCT---------CATGCCGTCACTCCGAGCATGGCGGCGACAATAAACTTTTAA
CTCCTAGTGGAGCTCCAGTAGAGCCTTCGTTTTCAAGTTCC-TTTT----------------------------------
-----------------------ACTTTTCTTTGGGGACAAGTTCCTTTTACTACTGCCTTTATCCAAGTA---GTGTGT
GCGTCCCTTAGTTTGGTGAATC-GTAAATGCTCTACTGCTTTGTTTCAGAATCTCCGGTGTCTTCGTAGTACGAGTTTTT
GCATGACCTGTGTGTACTGTCTGCGTGAGTCTGTCTACCTCAGGACTAGTCTACGCGTGACCTGTGTGTACTGTCTGCCT
GAGTCTGTCTACCTCAGGACTAGTCTAC-----------GC--GTGTGTTGTGTGCACCGAGGCGTACACGATCGATAGT
TTTCCTTT-GGGAGGGGATGACGTCATGG-------CTACTTTATTGATCTGATAATATCAGTACATCCTTCACGAAAGG
AGCTTACAAAGAAAATCAGAGAATTCCCCCTGCAAAAAAAAAAAAACCCAGAGAATTCATCGACCCAATTAGGAAAGACA
TCATGATCATAAGCGTAT--------------------------------------------------------------
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>SNPs
--------S-----------------------------S--------S---S----------------------------
--------------------S-----------------------S--S---------------------S----------
-S-----S----S--S--------------S---------------S------------SS-------------------
------------SSSSSSSSS-S-------S------S-------S-----SS---------------------------
------S-----S------S--------------S-S-S--------S-----S------S----S-------------S
S-S---------------S-----------------------------------------------------S-------
---------------------SS----S-------------------------S--S-------------S-S-------
----------------S--------------SS-------------------------------------S---------
---SSS------------S----------------------------------------S--------------------
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--------------------S-----------------------------------------------------------
------------------------------S----------------S--------------------------------
--------S------------------------------S------------------------------S--------S
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-------------------------------------------------------------------------------S
-----------------------------------S-------------------------------------S-S----
------------------------------------------------------------------------S-------
---------------------------------S----------------------------------------------
----S---------------------------------------------------------------------------
-----S------------------S-------------------------------------------------------
-----------------------------------------------------------S--------------------
-------------------------------------------------------------------S------------
----------------------S-SSS------------S----------------------------------------
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-----------------------SS---------------------------------------------------S---
-----------------------------------------------------S-----S--------------------
--S-----------------------------------------------------------------------------
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----------------------S-------------S-------------------------------------------
-----------------------------S--SS--S-------------------------S--S--------------
------------------------------------------------S-------------------------------
-----S------------------------------S-------------------------------------------
-------------------S-S-SSSSSSSSSSSSSSSS---------------------------S--------S----
----------------------S---------SSSS------S---------------S---------------------
-------S----------------------------------S---S---------------S-----------------
--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSS
>forward_969
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---------------------------------------------------------------------ACAGCCAACAC
TACAGCACT-----------------------------------------------------------------------
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>reverse_2672
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-------------------------------CTACGCGTGTGTGTGTGTTG-----------------------------
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