Multiple sequence alignment - TraesCS4A01G127600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G127600 chr4A 100.000 3426 0 0 1 3426 164624822 164628247 0.000000e+00 6327.0
1 TraesCS4A01G127600 chr4D 88.883 1952 79 48 765 2626 310111726 310109823 0.000000e+00 2276.0
2 TraesCS4A01G127600 chr4D 81.276 721 39 28 2736 3426 310108615 310107961 2.370000e-136 496.0
3 TraesCS4A01G127600 chr4D 84.615 299 17 14 2447 2734 310108940 310108660 1.570000e-68 270.0
4 TraesCS4A01G127600 chr4D 85.714 175 12 7 342 504 310114291 310114118 4.550000e-39 172.0
5 TraesCS4A01G127600 chr4D 89.565 115 5 2 2627 2734 310109769 310109655 4.610000e-29 139.0
6 TraesCS4A01G127600 chr4D 83.007 153 8 3 2734 2876 384968045 384968189 4.640000e-24 122.0
7 TraesCS4A01G127600 chr4D 88.679 106 3 4 2734 2838 310109603 310109506 1.670000e-23 121.0
8 TraesCS4A01G127600 chr4D 91.045 67 6 0 633 699 439821712 439821646 1.310000e-14 91.6
9 TraesCS4A01G127600 chr4D 100.000 28 0 0 41 68 297772842 297772815 6.000000e-03 52.8
10 TraesCS4A01G127600 chr4B 89.858 1755 74 42 740 2443 387511916 387510215 0.000000e+00 2159.0
11 TraesCS4A01G127600 chr4B 92.308 351 23 3 1256 1606 307579998 307579652 2.370000e-136 496.0
12 TraesCS4A01G127600 chr4B 80.328 732 60 30 2734 3426 387509789 387509103 8.600000e-131 477.0
13 TraesCS4A01G127600 chr4B 86.313 358 23 16 159 504 387514766 387514423 1.940000e-97 366.0
14 TraesCS4A01G127600 chr4B 90.000 90 5 2 2626 2711 387509930 387509841 2.790000e-21 113.0
15 TraesCS4A01G127600 chr3A 78.156 499 87 18 1688 2175 583927300 583927787 7.190000e-77 298.0
16 TraesCS4A01G127600 chr3B 76.553 499 95 19 1688 2175 580206326 580206813 1.580000e-63 254.0
17 TraesCS4A01G127600 chr3B 84.932 73 11 0 629 701 778735864 778735936 1.320000e-09 75.0
18 TraesCS4A01G127600 chr7A 90.811 185 16 1 1093 1276 733838427 733838611 2.640000e-61 246.0
19 TraesCS4A01G127600 chr7A 90.811 185 16 1 1093 1276 733850928 733851112 2.640000e-61 246.0
20 TraesCS4A01G127600 chr3D 75.696 539 103 23 1649 2175 442755296 442755818 9.500000e-61 244.0
21 TraesCS4A01G127600 chr3D 74.739 479 95 19 1128 1590 442754804 442755272 1.250000e-44 191.0
22 TraesCS4A01G127600 chr6A 92.308 78 6 0 624 701 522038511 522038588 1.010000e-20 111.0
23 TraesCS4A01G127600 chr6A 91.045 67 6 0 633 699 486271629 486271563 1.310000e-14 91.6
24 TraesCS4A01G127600 chr5D 86.667 105 6 2 2734 2838 152780100 152780196 3.610000e-20 110.0
25 TraesCS4A01G127600 chr6B 91.429 70 6 0 632 701 566304126 566304057 2.810000e-16 97.1
26 TraesCS4A01G127600 chr6B 90.164 61 6 0 641 701 427766164 427766224 2.830000e-11 80.5
27 TraesCS4A01G127600 chr2B 83.117 77 12 1 625 701 717344319 717344394 6.130000e-08 69.4
28 TraesCS4A01G127600 chr7D 82.353 68 12 0 629 696 78042561 78042628 3.690000e-05 60.2
29 TraesCS4A01G127600 chr1D 82.353 68 12 0 629 696 432025361 432025428 3.690000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G127600 chr4A 164624822 164628247 3425 False 6327.00 6327 100.000000 1 3426 1 chr4A.!!$F1 3425
1 TraesCS4A01G127600 chr4D 310107961 310114291 6330 True 579.00 2276 86.455333 342 3426 6 chr4D.!!$R3 3084
2 TraesCS4A01G127600 chr4B 387509103 387514766 5663 True 778.75 2159 86.624750 159 3426 4 chr4B.!!$R2 3267
3 TraesCS4A01G127600 chr3D 442754804 442755818 1014 False 217.50 244 75.217500 1128 2175 2 chr3D.!!$F1 1047

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
972 4108 0.035056 CACCACCACCCTCTTCATCC 60.035 60.0 0.0 0.0 0.0 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2970 7373 0.1078 CTCATCTGCCTCCCACACAG 60.108 60.0 0.0 0.0 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.341176 AAGCCGTACACACCGACC 59.659 61.111 0.00 0.00 0.00 4.79
18 19 3.230522 AAGCCGTACACACCGACCC 62.231 63.158 0.00 0.00 0.00 4.46
19 20 3.993584 GCCGTACACACCGACCCA 61.994 66.667 0.00 0.00 0.00 4.51
20 21 2.735883 CCGTACACACCGACCCAA 59.264 61.111 0.00 0.00 0.00 4.12
21 22 1.069427 CCGTACACACCGACCCAAA 59.931 57.895 0.00 0.00 0.00 3.28
22 23 1.223417 CCGTACACACCGACCCAAAC 61.223 60.000 0.00 0.00 0.00 2.93
23 24 0.530211 CGTACACACCGACCCAAACA 60.530 55.000 0.00 0.00 0.00 2.83
24 25 1.666054 GTACACACCGACCCAAACAA 58.334 50.000 0.00 0.00 0.00 2.83
25 26 2.015587 GTACACACCGACCCAAACAAA 58.984 47.619 0.00 0.00 0.00 2.83
26 27 0.812549 ACACACCGACCCAAACAAAC 59.187 50.000 0.00 0.00 0.00 2.93
27 28 0.811915 CACACCGACCCAAACAAACA 59.188 50.000 0.00 0.00 0.00 2.83
28 29 1.202582 CACACCGACCCAAACAAACAA 59.797 47.619 0.00 0.00 0.00 2.83
29 30 1.893801 ACACCGACCCAAACAAACAAA 59.106 42.857 0.00 0.00 0.00 2.83
30 31 2.263945 CACCGACCCAAACAAACAAAC 58.736 47.619 0.00 0.00 0.00 2.93
31 32 2.094442 CACCGACCCAAACAAACAAACT 60.094 45.455 0.00 0.00 0.00 2.66
32 33 2.094442 ACCGACCCAAACAAACAAACTG 60.094 45.455 0.00 0.00 0.00 3.16
33 34 1.923864 CGACCCAAACAAACAAACTGC 59.076 47.619 0.00 0.00 0.00 4.40
34 35 1.923864 GACCCAAACAAACAAACTGCG 59.076 47.619 0.00 0.00 0.00 5.18
35 36 1.273886 ACCCAAACAAACAAACTGCGT 59.726 42.857 0.00 0.00 0.00 5.24
36 37 1.658095 CCCAAACAAACAAACTGCGTG 59.342 47.619 0.00 0.00 0.00 5.34
37 38 2.333014 CCAAACAAACAAACTGCGTGT 58.667 42.857 0.00 0.00 0.00 4.49
38 39 2.734079 CCAAACAAACAAACTGCGTGTT 59.266 40.909 0.00 0.00 40.92 3.32
39 40 3.422862 CCAAACAAACAAACTGCGTGTTG 60.423 43.478 0.00 0.00 39.14 3.33
40 41 1.989430 ACAAACAAACTGCGTGTTGG 58.011 45.000 0.00 0.00 39.14 3.77
41 42 1.271102 ACAAACAAACTGCGTGTTGGT 59.729 42.857 0.00 0.00 44.23 3.67
45 46 3.414549 ACAAACTGCGTGTTGGTTTAG 57.585 42.857 0.00 0.00 39.67 1.85
46 47 2.098443 ACAAACTGCGTGTTGGTTTAGG 59.902 45.455 0.00 0.00 39.67 2.69
47 48 2.047002 AACTGCGTGTTGGTTTAGGT 57.953 45.000 0.00 0.00 37.52 3.08
48 49 1.589803 ACTGCGTGTTGGTTTAGGTC 58.410 50.000 0.00 0.00 0.00 3.85
49 50 0.511221 CTGCGTGTTGGTTTAGGTCG 59.489 55.000 0.00 0.00 0.00 4.79
50 51 0.104487 TGCGTGTTGGTTTAGGTCGA 59.896 50.000 0.00 0.00 0.00 4.20
51 52 0.509929 GCGTGTTGGTTTAGGTCGAC 59.490 55.000 7.13 7.13 0.00 4.20
52 53 1.855513 CGTGTTGGTTTAGGTCGACA 58.144 50.000 18.91 0.00 0.00 4.35
53 54 1.523934 CGTGTTGGTTTAGGTCGACAC 59.476 52.381 18.91 6.55 42.09 3.67
54 55 1.523934 GTGTTGGTTTAGGTCGACACG 59.476 52.381 18.91 0.00 38.17 4.49
55 56 1.136695 TGTTGGTTTAGGTCGACACGT 59.863 47.619 18.91 3.62 0.00 4.49
56 57 2.204237 GTTGGTTTAGGTCGACACGTT 58.796 47.619 18.91 2.13 0.00 3.99
57 58 1.855513 TGGTTTAGGTCGACACGTTG 58.144 50.000 18.91 0.00 0.00 4.10
58 59 1.142474 GGTTTAGGTCGACACGTTGG 58.858 55.000 18.91 0.00 0.00 3.77
59 60 1.269726 GGTTTAGGTCGACACGTTGGA 60.270 52.381 18.91 0.00 0.00 3.53
60 61 2.056577 GTTTAGGTCGACACGTTGGAG 58.943 52.381 18.91 0.00 0.00 3.86
61 62 1.321474 TTAGGTCGACACGTTGGAGT 58.679 50.000 18.91 0.00 0.00 3.85
62 63 1.321474 TAGGTCGACACGTTGGAGTT 58.679 50.000 18.91 0.00 0.00 3.01
63 64 0.249322 AGGTCGACACGTTGGAGTTG 60.249 55.000 18.91 0.00 0.00 3.16
64 65 1.563173 GTCGACACGTTGGAGTTGC 59.437 57.895 11.55 0.00 0.00 4.17
65 66 0.874607 GTCGACACGTTGGAGTTGCT 60.875 55.000 11.55 0.00 0.00 3.91
66 67 0.596600 TCGACACGTTGGAGTTGCTC 60.597 55.000 0.00 0.00 0.00 4.26
67 68 0.597637 CGACACGTTGGAGTTGCTCT 60.598 55.000 0.00 0.00 0.00 4.09
68 69 1.335597 CGACACGTTGGAGTTGCTCTA 60.336 52.381 0.00 0.00 0.00 2.43
69 70 2.750948 GACACGTTGGAGTTGCTCTAA 58.249 47.619 0.00 0.00 0.00 2.10
70 71 2.475487 GACACGTTGGAGTTGCTCTAAC 59.525 50.000 13.14 13.14 44.66 2.34
83 84 1.341852 GCTCTAACAGCCTACCCTAGC 59.658 57.143 0.00 0.00 43.17 3.42
84 85 2.667470 CTCTAACAGCCTACCCTAGCA 58.333 52.381 0.00 0.00 0.00 3.49
85 86 3.235200 CTCTAACAGCCTACCCTAGCAT 58.765 50.000 0.00 0.00 0.00 3.79
86 87 2.965831 TCTAACAGCCTACCCTAGCATG 59.034 50.000 0.00 0.00 0.00 4.06
87 88 1.879575 AACAGCCTACCCTAGCATGA 58.120 50.000 0.00 0.00 0.00 3.07
88 89 1.879575 ACAGCCTACCCTAGCATGAA 58.120 50.000 0.00 0.00 0.00 2.57
89 90 2.196595 ACAGCCTACCCTAGCATGAAA 58.803 47.619 0.00 0.00 0.00 2.69
90 91 2.092914 ACAGCCTACCCTAGCATGAAAC 60.093 50.000 0.00 0.00 0.00 2.78
91 92 1.139058 AGCCTACCCTAGCATGAAACG 59.861 52.381 0.00 0.00 0.00 3.60
92 93 1.810412 GCCTACCCTAGCATGAAACGG 60.810 57.143 0.00 0.00 0.00 4.44
93 94 1.485066 CCTACCCTAGCATGAAACGGT 59.515 52.381 0.00 0.00 0.00 4.83
94 95 2.550978 CTACCCTAGCATGAAACGGTG 58.449 52.381 0.00 0.00 0.00 4.94
95 96 0.676782 ACCCTAGCATGAAACGGTGC 60.677 55.000 0.00 0.00 41.57 5.01
96 97 0.676466 CCCTAGCATGAAACGGTGCA 60.676 55.000 0.00 0.00 43.63 4.57
97 98 1.164411 CCTAGCATGAAACGGTGCAA 58.836 50.000 0.00 0.00 43.63 4.08
98 99 1.539388 CCTAGCATGAAACGGTGCAAA 59.461 47.619 0.00 0.00 43.63 3.68
99 100 2.030363 CCTAGCATGAAACGGTGCAAAA 60.030 45.455 0.00 0.00 43.63 2.44
100 101 2.818130 AGCATGAAACGGTGCAAAAT 57.182 40.000 0.00 0.00 43.63 1.82
101 102 3.932545 AGCATGAAACGGTGCAAAATA 57.067 38.095 0.00 0.00 43.63 1.40
102 103 4.250116 AGCATGAAACGGTGCAAAATAA 57.750 36.364 0.00 0.00 43.63 1.40
103 104 4.236935 AGCATGAAACGGTGCAAAATAAG 58.763 39.130 0.00 0.00 43.63 1.73
104 105 3.987220 GCATGAAACGGTGCAAAATAAGT 59.013 39.130 0.00 0.00 40.94 2.24
105 106 4.143347 GCATGAAACGGTGCAAAATAAGTG 60.143 41.667 0.00 0.00 40.94 3.16
106 107 3.376540 TGAAACGGTGCAAAATAAGTGC 58.623 40.909 0.00 0.00 42.55 4.40
107 108 3.067461 TGAAACGGTGCAAAATAAGTGCT 59.933 39.130 0.00 0.00 42.69 4.40
108 109 4.276183 TGAAACGGTGCAAAATAAGTGCTA 59.724 37.500 0.00 0.00 42.69 3.49
109 110 3.824414 ACGGTGCAAAATAAGTGCTAC 57.176 42.857 0.00 0.00 42.69 3.58
110 111 3.408634 ACGGTGCAAAATAAGTGCTACT 58.591 40.909 0.00 0.00 42.69 2.57
111 112 3.435671 ACGGTGCAAAATAAGTGCTACTC 59.564 43.478 0.00 0.00 42.69 2.59
112 113 3.181510 CGGTGCAAAATAAGTGCTACTCC 60.182 47.826 0.00 0.00 42.69 3.85
113 114 4.010349 GGTGCAAAATAAGTGCTACTCCT 58.990 43.478 0.00 0.00 42.69 3.69
114 115 4.459337 GGTGCAAAATAAGTGCTACTCCTT 59.541 41.667 0.00 0.00 42.69 3.36
115 116 5.393962 GTGCAAAATAAGTGCTACTCCTTG 58.606 41.667 0.00 0.00 42.69 3.61
116 117 4.082787 TGCAAAATAAGTGCTACTCCTTGC 60.083 41.667 0.00 0.00 42.69 4.01
117 118 4.082787 GCAAAATAAGTGCTACTCCTTGCA 60.083 41.667 0.00 0.00 39.00 4.08
118 119 5.393461 GCAAAATAAGTGCTACTCCTTGCAT 60.393 40.000 0.00 0.00 41.45 3.96
119 120 6.624423 CAAAATAAGTGCTACTCCTTGCATT 58.376 36.000 0.00 0.00 41.45 3.56
120 121 5.824904 AATAAGTGCTACTCCTTGCATTG 57.175 39.130 0.00 0.00 41.45 2.82
121 122 2.119801 AGTGCTACTCCTTGCATTGG 57.880 50.000 0.00 0.00 41.45 3.16
122 123 1.630369 AGTGCTACTCCTTGCATTGGA 59.370 47.619 8.42 8.42 41.45 3.53
123 124 1.740025 GTGCTACTCCTTGCATTGGAC 59.260 52.381 5.01 0.00 41.45 4.02
124 125 1.630369 TGCTACTCCTTGCATTGGACT 59.370 47.619 5.01 0.56 33.94 3.85
125 126 2.012673 GCTACTCCTTGCATTGGACTG 58.987 52.381 5.01 0.64 0.00 3.51
126 127 2.012673 CTACTCCTTGCATTGGACTGC 58.987 52.381 5.01 0.00 42.62 4.40
132 133 2.126346 GCATTGGACTGCAACGCC 60.126 61.111 0.00 0.00 41.87 5.68
133 134 2.176546 CATTGGACTGCAACGCCG 59.823 61.111 0.00 0.00 0.00 6.46
134 135 2.281484 ATTGGACTGCAACGCCGT 60.281 55.556 0.00 0.00 0.00 5.68
135 136 2.325082 ATTGGACTGCAACGCCGTC 61.325 57.895 0.00 2.32 40.99 4.79
138 139 3.112709 GACTGCAACGCCGTCCTC 61.113 66.667 0.00 0.00 36.93 3.71
139 140 3.575351 GACTGCAACGCCGTCCTCT 62.575 63.158 0.00 0.00 36.93 3.69
140 141 2.811317 CTGCAACGCCGTCCTCTC 60.811 66.667 0.00 0.00 0.00 3.20
141 142 3.288308 CTGCAACGCCGTCCTCTCT 62.288 63.158 0.00 0.00 0.00 3.10
142 143 2.811317 GCAACGCCGTCCTCTCTG 60.811 66.667 0.00 0.00 0.00 3.35
143 144 2.962569 CAACGCCGTCCTCTCTGA 59.037 61.111 0.00 0.00 0.00 3.27
144 145 1.513158 CAACGCCGTCCTCTCTGAT 59.487 57.895 0.00 0.00 0.00 2.90
145 146 0.803768 CAACGCCGTCCTCTCTGATG 60.804 60.000 0.00 0.00 0.00 3.07
146 147 0.965866 AACGCCGTCCTCTCTGATGA 60.966 55.000 0.00 0.00 0.00 2.92
147 148 1.358402 CGCCGTCCTCTCTGATGAG 59.642 63.158 0.00 0.00 41.51 2.90
148 149 1.067250 GCCGTCCTCTCTGATGAGC 59.933 63.158 0.00 0.00 40.03 4.26
149 150 1.391157 GCCGTCCTCTCTGATGAGCT 61.391 60.000 0.00 0.00 40.03 4.09
150 151 1.974265 CCGTCCTCTCTGATGAGCTA 58.026 55.000 0.00 0.00 40.03 3.32
151 152 2.513753 CCGTCCTCTCTGATGAGCTAT 58.486 52.381 0.00 0.00 40.03 2.97
152 153 3.680490 CCGTCCTCTCTGATGAGCTATA 58.320 50.000 0.00 0.00 40.03 1.31
153 154 4.269183 CCGTCCTCTCTGATGAGCTATAT 58.731 47.826 0.00 0.00 40.03 0.86
154 155 5.432645 CCGTCCTCTCTGATGAGCTATATA 58.567 45.833 0.00 0.00 40.03 0.86
155 156 5.527214 CCGTCCTCTCTGATGAGCTATATAG 59.473 48.000 5.30 5.30 40.03 1.31
156 157 5.527214 CGTCCTCTCTGATGAGCTATATAGG 59.473 48.000 11.72 0.00 40.03 2.57
157 158 5.299279 GTCCTCTCTGATGAGCTATATAGGC 59.701 48.000 11.72 4.28 40.03 3.93
167 168 5.368145 TGAGCTATATAGGCTTGTGTTTGG 58.632 41.667 11.72 0.00 40.40 3.28
183 184 6.159988 TGTGTTTGGTTGAGTTGGTAAAAAG 58.840 36.000 0.00 0.00 0.00 2.27
184 185 6.015350 TGTGTTTGGTTGAGTTGGTAAAAAGA 60.015 34.615 0.00 0.00 0.00 2.52
193 194 5.650266 TGAGTTGGTAAAAAGAAGCAGTTGA 59.350 36.000 0.00 0.00 0.00 3.18
201 202 2.736670 AGAAGCAGTTGAGTTGGGTT 57.263 45.000 0.00 0.00 0.00 4.11
209 210 3.511146 CAGTTGAGTTGGGTTATGGCAAT 59.489 43.478 0.00 0.00 0.00 3.56
210 211 4.021192 CAGTTGAGTTGGGTTATGGCAATT 60.021 41.667 0.00 0.00 0.00 2.32
211 212 4.021192 AGTTGAGTTGGGTTATGGCAATTG 60.021 41.667 0.00 0.00 0.00 2.32
212 213 2.830923 TGAGTTGGGTTATGGCAATTGG 59.169 45.455 7.72 0.00 0.00 3.16
213 214 1.554617 AGTTGGGTTATGGCAATTGGC 59.445 47.619 24.20 24.20 43.74 4.52
292 298 3.056035 AGCCGTATCCGATTCTTATTCCC 60.056 47.826 0.00 0.00 35.63 3.97
296 302 1.420430 TCCGATTCTTATTCCCGCCT 58.580 50.000 0.00 0.00 0.00 5.52
297 303 1.070134 TCCGATTCTTATTCCCGCCTG 59.930 52.381 0.00 0.00 0.00 4.85
298 304 0.868406 CGATTCTTATTCCCGCCTGC 59.132 55.000 0.00 0.00 0.00 4.85
299 305 1.239347 GATTCTTATTCCCGCCTGCC 58.761 55.000 0.00 0.00 0.00 4.85
300 306 0.846693 ATTCTTATTCCCGCCTGCCT 59.153 50.000 0.00 0.00 0.00 4.75
301 307 0.107214 TTCTTATTCCCGCCTGCCTG 60.107 55.000 0.00 0.00 0.00 4.85
344 350 2.866726 GCCCGCCTTTTTGCTTGGA 61.867 57.895 0.00 0.00 0.00 3.53
385 391 0.243636 CAACCCCAACGGAAATGAGC 59.756 55.000 0.00 0.00 34.64 4.26
389 395 0.523072 CCCAACGGAAATGAGCACTG 59.477 55.000 0.00 0.00 0.00 3.66
390 396 1.238439 CCAACGGAAATGAGCACTGT 58.762 50.000 0.00 0.00 0.00 3.55
391 397 1.069022 CCAACGGAAATGAGCACTGTG 60.069 52.381 2.76 2.76 0.00 3.66
463 472 5.982056 CGTTTTTGTACGTCCTAGTACTC 57.018 43.478 0.00 0.00 45.23 2.59
464 473 4.853743 CGTTTTTGTACGTCCTAGTACTCC 59.146 45.833 0.00 0.00 45.23 3.85
465 474 5.562696 CGTTTTTGTACGTCCTAGTACTCCA 60.563 44.000 0.00 0.00 45.23 3.86
466 475 6.393171 GTTTTTGTACGTCCTAGTACTCCAT 58.607 40.000 0.00 0.00 45.23 3.41
468 477 3.813443 TGTACGTCCTAGTACTCCATCC 58.187 50.000 0.00 0.00 45.23 3.51
469 478 3.200605 TGTACGTCCTAGTACTCCATCCA 59.799 47.826 0.00 0.00 45.23 3.41
470 479 3.596940 ACGTCCTAGTACTCCATCCAT 57.403 47.619 0.00 0.00 0.00 3.41
471 480 4.719026 ACGTCCTAGTACTCCATCCATA 57.281 45.455 0.00 0.00 0.00 2.74
472 481 4.396522 ACGTCCTAGTACTCCATCCATAC 58.603 47.826 0.00 0.00 0.00 2.39
477 488 5.613973 TCCTAGTACTCCATCCATACCTACA 59.386 44.000 0.00 0.00 0.00 2.74
481 495 2.639839 ACTCCATCCATACCTACATGCC 59.360 50.000 0.00 0.00 0.00 4.40
489 503 5.826643 TCCATACCTACATGCCTTTCTTTT 58.173 37.500 0.00 0.00 0.00 2.27
504 521 5.691754 CCTTTCTTTTGTCACTGGCAATTAC 59.308 40.000 0.00 0.00 0.00 1.89
506 523 5.181690 TCTTTTGTCACTGGCAATTACAC 57.818 39.130 0.00 0.00 0.00 2.90
507 524 4.037446 TCTTTTGTCACTGGCAATTACACC 59.963 41.667 0.00 0.00 0.00 4.16
510 527 3.937814 TGTCACTGGCAATTACACCTAG 58.062 45.455 0.00 0.00 0.00 3.02
511 528 3.326588 TGTCACTGGCAATTACACCTAGT 59.673 43.478 0.00 0.00 0.00 2.57
512 529 3.684788 GTCACTGGCAATTACACCTAGTG 59.315 47.826 0.00 0.00 39.75 2.74
514 531 4.528987 TCACTGGCAATTACACCTAGTGTA 59.471 41.667 3.51 3.51 45.56 2.90
515 532 5.188948 TCACTGGCAATTACACCTAGTGTAT 59.811 40.000 8.31 0.00 46.36 2.29
516 533 5.523916 CACTGGCAATTACACCTAGTGTATC 59.476 44.000 8.31 0.13 46.36 2.24
517 534 5.031066 TGGCAATTACACCTAGTGTATCC 57.969 43.478 8.31 8.17 46.36 2.59
518 535 4.471747 TGGCAATTACACCTAGTGTATCCA 59.528 41.667 8.31 10.17 46.36 3.41
519 536 5.131977 TGGCAATTACACCTAGTGTATCCAT 59.868 40.000 8.31 0.00 46.36 3.41
520 537 6.327887 TGGCAATTACACCTAGTGTATCCATA 59.672 38.462 8.31 0.00 46.36 2.74
522 539 7.172703 GGCAATTACACCTAGTGTATCCATAAC 59.827 40.741 8.31 0.00 46.36 1.89
523 540 7.095774 GCAATTACACCTAGTGTATCCATAACG 60.096 40.741 8.31 0.00 46.36 3.18
525 542 8.696043 ATTACACCTAGTGTATCCATAACGTA 57.304 34.615 8.31 0.00 46.36 3.57
526 543 6.630444 ACACCTAGTGTATCCATAACGTAG 57.370 41.667 0.00 0.00 45.56 3.51
527 544 5.009410 ACACCTAGTGTATCCATAACGTAGC 59.991 44.000 0.00 0.00 45.56 3.58
528 545 4.214971 ACCTAGTGTATCCATAACGTAGCG 59.785 45.833 0.00 0.00 0.00 4.26
529 546 4.214971 CCTAGTGTATCCATAACGTAGCGT 59.785 45.833 0.00 0.00 43.97 5.07
530 547 5.409520 CCTAGTGTATCCATAACGTAGCGTA 59.590 44.000 0.00 0.00 39.99 4.42
533 550 4.322804 GTGTATCCATAACGTAGCGTATGC 59.677 45.833 0.00 0.00 39.99 3.14
534 551 3.653539 ATCCATAACGTAGCGTATGCA 57.346 42.857 10.11 0.00 46.23 3.96
535 552 3.007979 TCCATAACGTAGCGTATGCAG 57.992 47.619 10.11 2.67 46.23 4.41
536 553 2.619646 TCCATAACGTAGCGTATGCAGA 59.380 45.455 10.11 0.00 46.23 4.26
537 554 3.254903 TCCATAACGTAGCGTATGCAGAT 59.745 43.478 10.11 0.00 46.23 2.90
538 555 3.987868 CCATAACGTAGCGTATGCAGATT 59.012 43.478 10.11 0.65 46.23 2.40
539 556 4.447724 CCATAACGTAGCGTATGCAGATTT 59.552 41.667 10.11 0.00 46.23 2.17
540 557 5.050363 CCATAACGTAGCGTATGCAGATTTT 60.050 40.000 10.11 0.00 46.23 1.82
541 558 4.516092 AACGTAGCGTATGCAGATTTTC 57.484 40.909 10.11 0.00 46.23 2.29
542 559 3.782046 ACGTAGCGTATGCAGATTTTCT 58.218 40.909 10.11 0.00 46.23 2.52
543 560 3.551890 ACGTAGCGTATGCAGATTTTCTG 59.448 43.478 10.11 0.08 46.23 3.02
544 561 4.676986 ACGTAGCGTATGCAGATTTTCTGA 60.677 41.667 10.11 0.00 42.00 3.27
546 563 7.556006 ACGTAGCGTATGCAGATTTTCTGAAA 61.556 38.462 10.11 0.00 42.00 2.69
547 564 8.947657 ACGTAGCGTATGCAGATTTTCTGAAAA 61.948 37.037 17.04 17.04 42.00 2.29
564 581 9.921637 TTTCTGAAAAGTCAAACATTACAAACT 57.078 25.926 0.00 0.00 31.88 2.66
565 582 9.921637 TTCTGAAAAGTCAAACATTACAAACTT 57.078 25.926 0.00 0.00 31.88 2.66
566 583 9.921637 TCTGAAAAGTCAAACATTACAAACTTT 57.078 25.926 0.00 0.00 38.27 2.66
583 1923 4.395959 ACTTTAGAGTTTCCACGTGTGA 57.604 40.909 15.65 8.70 29.87 3.58
597 1937 1.606601 TGTGACGTGGGAGGAGAGG 60.607 63.158 0.00 0.00 0.00 3.69
598 1938 1.606889 GTGACGTGGGAGGAGAGGT 60.607 63.158 0.00 0.00 0.00 3.85
603 1943 1.889530 CGTGGGAGGAGAGGTTGTCC 61.890 65.000 0.00 0.00 0.00 4.02
620 1960 6.897966 AGGTTGTCCTCTTGATGTATCTAAGA 59.102 38.462 0.00 0.00 40.58 2.10
623 1963 7.962995 TGTCCTCTTGATGTATCTAAGAAGT 57.037 36.000 0.00 0.00 30.77 3.01
624 1964 9.475620 TTGTCCTCTTGATGTATCTAAGAAGTA 57.524 33.333 0.00 0.00 30.77 2.24
626 1966 9.959749 GTCCTCTTGATGTATCTAAGAAGTAAG 57.040 37.037 0.00 0.00 30.77 2.34
627 1967 9.922477 TCCTCTTGATGTATCTAAGAAGTAAGA 57.078 33.333 0.00 0.00 30.77 2.10
730 2285 4.870123 AAAATGCACTGAACAATGGCTA 57.130 36.364 0.00 0.00 0.00 3.93
732 2287 2.566833 TGCACTGAACAATGGCTACT 57.433 45.000 0.00 0.00 0.00 2.57
733 2288 2.153645 TGCACTGAACAATGGCTACTG 58.846 47.619 0.00 0.00 0.00 2.74
750 3868 0.179000 CTGCCTGCCTACTGGTAAGG 59.821 60.000 0.00 0.00 40.27 2.69
756 3874 0.902531 GCCTACTGGTAAGGAGCACA 59.097 55.000 0.00 0.00 32.26 4.57
758 3876 1.482593 CCTACTGGTAAGGAGCACAGG 59.517 57.143 0.00 0.00 32.26 4.00
759 3877 1.482593 CTACTGGTAAGGAGCACAGGG 59.517 57.143 0.00 0.00 35.34 4.45
760 3878 0.178903 ACTGGTAAGGAGCACAGGGA 60.179 55.000 0.00 0.00 35.34 4.20
761 3879 0.539051 CTGGTAAGGAGCACAGGGAG 59.461 60.000 0.00 0.00 0.00 4.30
762 3880 0.909610 TGGTAAGGAGCACAGGGAGG 60.910 60.000 0.00 0.00 0.00 4.30
763 3881 0.617820 GGTAAGGAGCACAGGGAGGA 60.618 60.000 0.00 0.00 0.00 3.71
764 3882 1.276622 GTAAGGAGCACAGGGAGGAA 58.723 55.000 0.00 0.00 0.00 3.36
765 3883 1.208293 GTAAGGAGCACAGGGAGGAAG 59.792 57.143 0.00 0.00 0.00 3.46
766 3884 0.178891 AAGGAGCACAGGGAGGAAGA 60.179 55.000 0.00 0.00 0.00 2.87
767 3885 0.178891 AGGAGCACAGGGAGGAAGAA 60.179 55.000 0.00 0.00 0.00 2.52
814 3932 2.814336 AGAAGAAAAATGGTCGTCCTGC 59.186 45.455 0.00 0.00 34.23 4.85
815 3933 2.568623 AGAAAAATGGTCGTCCTGCT 57.431 45.000 0.00 0.00 34.23 4.24
816 3934 2.427506 AGAAAAATGGTCGTCCTGCTC 58.572 47.619 0.00 0.00 34.23 4.26
817 3935 2.039084 AGAAAAATGGTCGTCCTGCTCT 59.961 45.455 0.00 0.00 34.23 4.09
818 3936 2.100605 AAAATGGTCGTCCTGCTCTC 57.899 50.000 0.00 0.00 34.23 3.20
819 3937 1.270907 AAATGGTCGTCCTGCTCTCT 58.729 50.000 0.00 0.00 34.23 3.10
820 3938 0.820871 AATGGTCGTCCTGCTCTCTC 59.179 55.000 0.00 0.00 34.23 3.20
821 3939 1.040339 ATGGTCGTCCTGCTCTCTCC 61.040 60.000 0.00 0.00 34.23 3.71
829 3947 1.620259 CTGCTCTCTCCCTCCCTCT 59.380 63.158 0.00 0.00 0.00 3.69
960 4096 2.026356 CCATTACTCACCATCACCACCA 60.026 50.000 0.00 0.00 0.00 4.17
961 4097 2.851263 TTACTCACCATCACCACCAC 57.149 50.000 0.00 0.00 0.00 4.16
963 4099 1.002134 CTCACCATCACCACCACCC 60.002 63.158 0.00 0.00 0.00 4.61
969 4105 0.692476 CATCACCACCACCCTCTTCA 59.308 55.000 0.00 0.00 0.00 3.02
972 4108 0.035056 CACCACCACCCTCTTCATCC 60.035 60.000 0.00 0.00 0.00 3.51
983 4119 1.137872 CTCTTCATCCTCCTCCAACCG 59.862 57.143 0.00 0.00 0.00 4.44
984 4120 0.179000 CTTCATCCTCCTCCAACCGG 59.821 60.000 0.00 0.00 0.00 5.28
986 4122 0.252513 TCATCCTCCTCCAACCGGAA 60.253 55.000 9.46 0.00 42.21 4.30
987 4123 0.107654 CATCCTCCTCCAACCGGAAC 60.108 60.000 9.46 0.00 42.21 3.62
988 4124 1.272554 ATCCTCCTCCAACCGGAACC 61.273 60.000 9.46 0.00 42.21 3.62
989 4125 1.918800 CCTCCTCCAACCGGAACCT 60.919 63.158 9.46 0.00 42.21 3.50
990 4126 1.597461 CTCCTCCAACCGGAACCTC 59.403 63.158 9.46 0.00 42.21 3.85
991 4127 1.152204 TCCTCCAACCGGAACCTCA 60.152 57.895 9.46 0.00 42.21 3.86
992 4128 1.003718 CCTCCAACCGGAACCTCAC 60.004 63.158 9.46 0.00 42.21 3.51
993 4129 1.003718 CTCCAACCGGAACCTCACC 60.004 63.158 9.46 0.00 42.21 4.02
994 4130 1.764571 CTCCAACCGGAACCTCACCA 61.765 60.000 9.46 0.00 42.21 4.17
995 4131 1.149627 CCAACCGGAACCTCACCAA 59.850 57.895 9.46 0.00 0.00 3.67
998 4134 0.108019 AACCGGAACCTCACCAACTC 59.892 55.000 9.46 0.00 0.00 3.01
1000 4136 1.752198 CGGAACCTCACCAACTCCA 59.248 57.895 0.00 0.00 0.00 3.86
1003 4139 0.765510 GAACCTCACCAACTCCACCT 59.234 55.000 0.00 0.00 0.00 4.00
1021 4171 4.486503 CCTCCTCCTGCTGCTGCC 62.487 72.222 13.47 0.00 38.71 4.85
1764 4964 1.300003 CATCAGCTCGCTCATCGCT 60.300 57.895 0.00 0.00 38.27 4.93
1905 5105 2.357034 TTCACCGACAAGCCGCTC 60.357 61.111 0.00 0.00 0.00 5.03
1906 5106 4.717629 TCACCGACAAGCCGCTCG 62.718 66.667 0.00 0.00 0.00 5.03
1965 5165 0.674581 CCTGCAACATGAAGCTCCGA 60.675 55.000 0.00 0.00 0.00 4.55
1989 5189 2.672908 CCCATGCTGGAGCTGTCA 59.327 61.111 0.00 0.00 40.96 3.58
2169 5372 2.145397 ACCTGCTAGAGATGAACGGA 57.855 50.000 0.00 0.00 0.00 4.69
2188 5403 3.446184 GATTCTAATCCTTGCGCGATG 57.554 47.619 12.10 0.00 0.00 3.84
2207 5422 3.417224 CGATGGCGATGGCGATGG 61.417 66.667 1.13 0.00 37.76 3.51
2300 5515 2.557317 CACCGAGGTGTTACTTGTTGT 58.443 47.619 13.82 0.00 40.91 3.32
2329 5544 2.627221 AGCAGCGATCATGTCTCATACT 59.373 45.455 0.00 0.00 0.00 2.12
2330 5545 3.823304 AGCAGCGATCATGTCTCATACTA 59.177 43.478 0.00 0.00 0.00 1.82
2331 5546 3.917380 GCAGCGATCATGTCTCATACTAC 59.083 47.826 0.00 0.00 0.00 2.73
2332 5547 4.154717 CAGCGATCATGTCTCATACTACG 58.845 47.826 0.00 0.00 0.00 3.51
2333 5548 3.815962 AGCGATCATGTCTCATACTACGT 59.184 43.478 0.00 0.00 0.00 3.57
2334 5549 4.995487 AGCGATCATGTCTCATACTACGTA 59.005 41.667 0.00 0.00 0.00 3.57
2383 5616 2.443387 CATCATTTCGTTGCGGTGATG 58.557 47.619 13.29 13.29 39.88 3.07
2385 5618 1.196581 TCATTTCGTTGCGGTGATGTG 59.803 47.619 0.00 0.00 0.00 3.21
2388 5621 0.795698 TTCGTTGCGGTGATGTGATG 59.204 50.000 0.00 0.00 0.00 3.07
2438 5673 7.200455 TGAAGTGATACGACATTACCACATAG 58.800 38.462 0.00 0.00 0.00 2.23
2443 5678 8.133627 GTGATACGACATTACCACATAGTACTT 58.866 37.037 0.00 0.00 0.00 2.24
2445 5680 9.604626 GATACGACATTACCACATAGTACTTAC 57.395 37.037 0.00 0.00 0.00 2.34
2538 5804 4.639310 CCTCATCAACATGAAAAGGAGGAG 59.361 45.833 16.29 12.82 38.63 3.69
2585 5858 4.080807 TGTGAGTTTGTGACCAGGAAACTA 60.081 41.667 4.37 0.00 39.46 2.24
2623 5903 0.676782 ATAAGCTCCCACGTTGGTGC 60.677 55.000 21.48 21.48 43.00 5.01
2658 5998 4.104579 TGCATTTGCTCCTATCCTAATCCA 59.895 41.667 3.94 0.00 42.66 3.41
2696 6040 4.767578 ATCCTATTGCTTCTCTCTTGCA 57.232 40.909 0.00 0.00 34.69 4.08
2703 6047 3.425659 TGCTTCTCTCTTGCACTCTCTA 58.574 45.455 0.00 0.00 0.00 2.43
2776 6177 1.396648 CTTTCCGCGATGCACACAATA 59.603 47.619 8.23 0.00 0.00 1.90
2777 6178 1.662517 TTCCGCGATGCACACAATAT 58.337 45.000 8.23 0.00 0.00 1.28
2778 6179 1.217001 TCCGCGATGCACACAATATC 58.783 50.000 8.23 0.00 0.00 1.63
2779 6180 0.235665 CCGCGATGCACACAATATCC 59.764 55.000 8.23 0.00 0.00 2.59
2792 6193 5.532032 CACACAATATCCATCCATACAGCAA 59.468 40.000 0.00 0.00 0.00 3.91
2811 6212 3.059800 GCAATTCGGATCGGCTTACTTAC 60.060 47.826 0.00 0.00 0.00 2.34
2812 6213 4.369182 CAATTCGGATCGGCTTACTTACT 58.631 43.478 0.00 0.00 0.00 2.24
2813 6214 4.667519 ATTCGGATCGGCTTACTTACTT 57.332 40.909 0.00 0.00 0.00 2.24
2814 6215 3.431922 TCGGATCGGCTTACTTACTTG 57.568 47.619 0.00 0.00 0.00 3.16
2846 6257 3.005554 CACATTCTTGTGCCAGACTAGG 58.994 50.000 0.00 0.00 46.20 3.02
2870 7264 5.391310 GCAAATCTATTCCGGAGTGCATATG 60.391 44.000 10.18 5.18 31.88 1.78
2871 7265 3.319137 TCTATTCCGGAGTGCATATGC 57.681 47.619 21.09 21.09 42.50 3.14
2872 7266 2.899900 TCTATTCCGGAGTGCATATGCT 59.100 45.455 27.13 9.28 42.66 3.79
2933 7336 0.248054 CCACGCACGCATTATTGACC 60.248 55.000 0.00 0.00 0.00 4.02
2934 7337 0.248054 CACGCACGCATTATTGACCC 60.248 55.000 0.00 0.00 0.00 4.46
2939 7342 1.946768 CACGCATTATTGACCCGGAAT 59.053 47.619 0.73 0.00 0.00 3.01
2942 7345 2.287547 CGCATTATTGACCCGGAATTGG 60.288 50.000 0.73 0.00 0.00 3.16
2944 7347 3.243401 GCATTATTGACCCGGAATTGGAC 60.243 47.826 0.73 0.00 0.00 4.02
2970 7373 3.391965 TGGACATTGTCAAAATGCTTGC 58.608 40.909 18.09 0.00 33.68 4.01
2985 7388 2.401699 CTTGCTGTGTGGGAGGCAGA 62.402 60.000 0.00 0.00 36.06 4.26
3006 7409 6.207025 GCAGATGAGATGCCTTGATCTTTATT 59.793 38.462 0.00 0.00 37.73 1.40
3007 7410 7.389884 GCAGATGAGATGCCTTGATCTTTATTA 59.610 37.037 0.00 0.00 37.73 0.98
3008 7411 9.451002 CAGATGAGATGCCTTGATCTTTATTAT 57.549 33.333 0.00 0.00 32.57 1.28
3041 7444 1.352083 TCCTTGACTTGTGGGAGGAG 58.648 55.000 0.00 0.00 32.91 3.69
3043 7446 1.352083 CTTGACTTGTGGGAGGAGGA 58.648 55.000 0.00 0.00 0.00 3.71
3044 7447 1.699634 CTTGACTTGTGGGAGGAGGAA 59.300 52.381 0.00 0.00 0.00 3.36
3047 7450 1.301293 CTTGTGGGAGGAGGAAGGC 59.699 63.158 0.00 0.00 0.00 4.35
3055 7458 1.248486 GAGGAGGAAGGCACCAAAAC 58.752 55.000 3.78 0.00 0.00 2.43
3063 7466 3.243401 GGAAGGCACCAAAACTGTGTAAG 60.243 47.826 0.00 0.00 36.11 2.34
3077 7480 6.179906 ACTGTGTAAGGATGGAGATAATGG 57.820 41.667 0.00 0.00 0.00 3.16
3078 7481 4.973168 TGTGTAAGGATGGAGATAATGGC 58.027 43.478 0.00 0.00 0.00 4.40
3079 7482 4.411869 TGTGTAAGGATGGAGATAATGGCA 59.588 41.667 0.00 0.00 0.00 4.92
3080 7483 5.073554 TGTGTAAGGATGGAGATAATGGCAT 59.926 40.000 0.00 0.00 0.00 4.40
3082 7485 3.083122 AGGATGGAGATAATGGCATGC 57.917 47.619 9.90 9.90 0.00 4.06
3099 7503 0.469070 TGCTTTGCTGGGTTTGCATT 59.531 45.000 0.00 0.00 40.34 3.56
3100 7504 0.869730 GCTTTGCTGGGTTTGCATTG 59.130 50.000 0.00 0.00 40.34 2.82
3112 7523 0.312729 TTGCATTGTGAGCTGCTGTG 59.687 50.000 7.01 0.00 39.16 3.66
3145 7556 1.067582 GTCGCGATTACAGAGGGGG 59.932 63.158 14.06 0.00 0.00 5.40
3159 7570 2.795960 AGAGGGGGTTAGGCTAGACATA 59.204 50.000 0.00 0.00 0.00 2.29
3189 7600 1.547372 CCAGCTGTTTGATTCCTTGGG 59.453 52.381 13.81 0.00 0.00 4.12
3258 7684 2.181125 TGGTTGGATGAGCATGCATTT 58.819 42.857 21.98 2.86 38.92 2.32
3264 7690 3.382227 TGGATGAGCATGCATTTTGGTAG 59.618 43.478 21.98 0.00 34.14 3.18
3265 7691 2.945447 TGAGCATGCATTTTGGTAGC 57.055 45.000 21.98 0.00 0.00 3.58
3266 7692 2.169330 TGAGCATGCATTTTGGTAGCA 58.831 42.857 21.98 0.00 43.14 3.49
3267 7693 2.094597 TGAGCATGCATTTTGGTAGCAC 60.095 45.455 21.98 0.00 41.60 4.40
3268 7694 2.165030 GAGCATGCATTTTGGTAGCACT 59.835 45.455 21.98 0.00 41.60 4.40
3269 7695 3.355378 AGCATGCATTTTGGTAGCACTA 58.645 40.909 21.98 0.00 41.60 2.74
3270 7696 3.956199 AGCATGCATTTTGGTAGCACTAT 59.044 39.130 21.98 0.00 41.60 2.12
3271 7697 5.132502 AGCATGCATTTTGGTAGCACTATA 58.867 37.500 21.98 0.00 41.60 1.31
3272 7698 5.771666 AGCATGCATTTTGGTAGCACTATAT 59.228 36.000 21.98 0.00 41.60 0.86
3273 7699 6.942005 AGCATGCATTTTGGTAGCACTATATA 59.058 34.615 21.98 0.00 41.60 0.86
3274 7700 7.613022 AGCATGCATTTTGGTAGCACTATATAT 59.387 33.333 21.98 0.00 41.60 0.86
3275 7701 8.892723 GCATGCATTTTGGTAGCACTATATATA 58.107 33.333 14.21 0.00 41.60 0.86
3310 7751 4.444536 AGGTTAGTGACTGCGTAAAACAA 58.555 39.130 0.00 0.00 0.00 2.83
3311 7752 4.877251 AGGTTAGTGACTGCGTAAAACAAA 59.123 37.500 0.00 0.00 0.00 2.83
3312 7753 5.354792 AGGTTAGTGACTGCGTAAAACAAAA 59.645 36.000 0.00 0.00 0.00 2.44
3313 7754 5.453266 GGTTAGTGACTGCGTAAAACAAAAC 59.547 40.000 0.00 0.00 0.00 2.43
3314 7755 3.676540 AGTGACTGCGTAAAACAAAACG 58.323 40.909 0.00 0.00 41.92 3.60
3338 7779 6.363088 CGCATTTTCTTGTGTTGATGTAATGT 59.637 34.615 0.00 0.00 0.00 2.71
3340 7781 9.190858 GCATTTTCTTGTGTTGATGTAATGTAA 57.809 29.630 0.00 0.00 0.00 2.41
3344 7785 8.628630 TTCTTGTGTTGATGTAATGTAATGGA 57.371 30.769 0.00 0.00 0.00 3.41
3345 7786 8.267620 TCTTGTGTTGATGTAATGTAATGGAG 57.732 34.615 0.00 0.00 0.00 3.86
3346 7787 6.435430 TGTGTTGATGTAATGTAATGGAGC 57.565 37.500 0.00 0.00 0.00 4.70
3350 7791 5.039920 TGATGTAATGTAATGGAGCAGCT 57.960 39.130 0.00 0.00 0.00 4.24
3351 7792 4.818005 TGATGTAATGTAATGGAGCAGCTG 59.182 41.667 10.11 10.11 0.00 4.24
3352 7793 4.220693 TGTAATGTAATGGAGCAGCTGT 57.779 40.909 16.64 1.59 0.00 4.40
3353 7794 3.940852 TGTAATGTAATGGAGCAGCTGTG 59.059 43.478 16.64 0.00 0.00 3.66
3380 7821 2.681848 CTGTGCTGTGATCCTGGATTTC 59.318 50.000 11.17 7.75 0.00 2.17
3381 7822 2.040145 TGTGCTGTGATCCTGGATTTCA 59.960 45.455 11.17 11.69 0.00 2.69
3382 7823 3.285484 GTGCTGTGATCCTGGATTTCAT 58.715 45.455 11.17 0.00 0.00 2.57
3383 7824 3.698040 GTGCTGTGATCCTGGATTTCATT 59.302 43.478 11.17 0.00 0.00 2.57
3392 7833 9.075678 GTGATCCTGGATTTCATTGATTAATCT 57.924 33.333 16.24 0.00 0.00 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.341176 GGTCGGTGTGTACGGCTT 59.659 61.111 0.00 0.00 36.01 4.35
1 2 3.688159 GGGTCGGTGTGTACGGCT 61.688 66.667 0.00 0.00 36.01 5.52
3 4 1.069427 TTTGGGTCGGTGTGTACGG 59.931 57.895 0.00 0.00 0.00 4.02
6 7 2.015587 GTTTGTTTGGGTCGGTGTGTA 58.984 47.619 0.00 0.00 0.00 2.90
7 8 0.812549 GTTTGTTTGGGTCGGTGTGT 59.187 50.000 0.00 0.00 0.00 3.72
8 9 0.811915 TGTTTGTTTGGGTCGGTGTG 59.188 50.000 0.00 0.00 0.00 3.82
9 10 1.546961 TTGTTTGTTTGGGTCGGTGT 58.453 45.000 0.00 0.00 0.00 4.16
10 11 2.094442 AGTTTGTTTGTTTGGGTCGGTG 60.094 45.455 0.00 0.00 0.00 4.94
11 12 2.094442 CAGTTTGTTTGTTTGGGTCGGT 60.094 45.455 0.00 0.00 0.00 4.69
12 13 2.535331 CAGTTTGTTTGTTTGGGTCGG 58.465 47.619 0.00 0.00 0.00 4.79
13 14 1.923864 GCAGTTTGTTTGTTTGGGTCG 59.076 47.619 0.00 0.00 0.00 4.79
14 15 1.923864 CGCAGTTTGTTTGTTTGGGTC 59.076 47.619 0.00 0.00 0.00 4.46
15 16 1.273886 ACGCAGTTTGTTTGTTTGGGT 59.726 42.857 0.00 0.00 37.78 4.51
16 17 1.658095 CACGCAGTTTGTTTGTTTGGG 59.342 47.619 0.00 0.00 41.61 4.12
17 18 2.333014 ACACGCAGTTTGTTTGTTTGG 58.667 42.857 0.00 0.00 41.61 3.28
18 19 3.422862 CCAACACGCAGTTTGTTTGTTTG 60.423 43.478 0.00 0.00 41.61 2.93
19 20 2.734079 CCAACACGCAGTTTGTTTGTTT 59.266 40.909 0.00 0.00 41.61 2.83
20 21 2.288518 ACCAACACGCAGTTTGTTTGTT 60.289 40.909 0.00 0.00 41.61 2.83
21 22 1.271102 ACCAACACGCAGTTTGTTTGT 59.729 42.857 0.00 0.00 41.61 2.83
22 23 1.989430 ACCAACACGCAGTTTGTTTG 58.011 45.000 0.00 0.00 41.61 2.93
23 24 2.734276 AACCAACACGCAGTTTGTTT 57.266 40.000 5.36 0.00 41.69 2.83
24 25 2.734276 AAACCAACACGCAGTTTGTT 57.266 40.000 5.36 5.36 45.02 2.83
25 26 2.098443 CCTAAACCAACACGCAGTTTGT 59.902 45.455 0.00 0.00 41.61 2.83
26 27 2.098443 ACCTAAACCAACACGCAGTTTG 59.902 45.455 0.00 0.00 41.61 2.93
27 28 2.356695 GACCTAAACCAACACGCAGTTT 59.643 45.455 0.00 0.00 41.61 2.66
28 29 1.944709 GACCTAAACCAACACGCAGTT 59.055 47.619 0.00 0.00 41.61 3.16
30 31 0.511221 CGACCTAAACCAACACGCAG 59.489 55.000 0.00 0.00 0.00 5.18
31 32 0.104487 TCGACCTAAACCAACACGCA 59.896 50.000 0.00 0.00 0.00 5.24
32 33 0.509929 GTCGACCTAAACCAACACGC 59.490 55.000 3.51 0.00 0.00 5.34
33 34 1.523934 GTGTCGACCTAAACCAACACG 59.476 52.381 14.12 0.00 0.00 4.49
34 35 1.523934 CGTGTCGACCTAAACCAACAC 59.476 52.381 14.12 0.00 34.98 3.32
35 36 1.136695 ACGTGTCGACCTAAACCAACA 59.863 47.619 14.12 0.00 0.00 3.33
36 37 1.856802 ACGTGTCGACCTAAACCAAC 58.143 50.000 14.12 0.40 0.00 3.77
37 38 2.203401 CAACGTGTCGACCTAAACCAA 58.797 47.619 14.12 0.00 0.00 3.67
38 39 1.538634 CCAACGTGTCGACCTAAACCA 60.539 52.381 14.12 0.00 0.00 3.67
39 40 1.142474 CCAACGTGTCGACCTAAACC 58.858 55.000 14.12 0.00 0.00 3.27
40 41 2.056577 CTCCAACGTGTCGACCTAAAC 58.943 52.381 14.12 3.19 0.00 2.01
41 42 1.682854 ACTCCAACGTGTCGACCTAAA 59.317 47.619 14.12 0.00 0.00 1.85
42 43 1.321474 ACTCCAACGTGTCGACCTAA 58.679 50.000 14.12 0.00 0.00 2.69
43 44 1.001048 CAACTCCAACGTGTCGACCTA 60.001 52.381 14.12 0.00 0.00 3.08
44 45 0.249322 CAACTCCAACGTGTCGACCT 60.249 55.000 14.12 0.00 0.00 3.85
45 46 1.828331 GCAACTCCAACGTGTCGACC 61.828 60.000 14.12 3.43 0.00 4.79
46 47 0.874607 AGCAACTCCAACGTGTCGAC 60.875 55.000 9.11 9.11 0.00 4.20
47 48 0.596600 GAGCAACTCCAACGTGTCGA 60.597 55.000 0.00 0.00 0.00 4.20
48 49 0.597637 AGAGCAACTCCAACGTGTCG 60.598 55.000 0.00 0.00 0.00 4.35
49 50 2.433868 TAGAGCAACTCCAACGTGTC 57.566 50.000 0.00 0.00 0.00 3.67
50 51 2.159014 TGTTAGAGCAACTCCAACGTGT 60.159 45.455 0.00 0.00 35.48 4.49
51 52 2.476619 CTGTTAGAGCAACTCCAACGTG 59.523 50.000 0.00 0.00 35.48 4.49
52 53 2.755650 CTGTTAGAGCAACTCCAACGT 58.244 47.619 2.34 0.00 35.48 3.99
64 65 2.667470 TGCTAGGGTAGGCTGTTAGAG 58.333 52.381 0.00 0.00 0.00 2.43
65 66 2.840640 TGCTAGGGTAGGCTGTTAGA 57.159 50.000 0.00 0.00 0.00 2.10
66 67 2.965831 TCATGCTAGGGTAGGCTGTTAG 59.034 50.000 0.00 0.00 0.00 2.34
67 68 3.040655 TCATGCTAGGGTAGGCTGTTA 57.959 47.619 0.00 0.00 0.00 2.41
68 69 1.879575 TCATGCTAGGGTAGGCTGTT 58.120 50.000 0.00 0.00 0.00 3.16
69 70 1.879575 TTCATGCTAGGGTAGGCTGT 58.120 50.000 0.00 0.00 0.00 4.40
70 71 2.565841 GTTTCATGCTAGGGTAGGCTG 58.434 52.381 0.00 0.00 0.00 4.85
71 72 1.139058 CGTTTCATGCTAGGGTAGGCT 59.861 52.381 0.00 0.00 0.00 4.58
72 73 1.583054 CGTTTCATGCTAGGGTAGGC 58.417 55.000 0.00 0.00 0.00 3.93
73 74 1.485066 ACCGTTTCATGCTAGGGTAGG 59.515 52.381 8.83 0.00 31.20 3.18
74 75 2.550978 CACCGTTTCATGCTAGGGTAG 58.449 52.381 9.86 3.78 31.72 3.18
75 76 1.406341 GCACCGTTTCATGCTAGGGTA 60.406 52.381 9.86 0.00 38.84 3.69
76 77 0.676782 GCACCGTTTCATGCTAGGGT 60.677 55.000 5.70 5.70 38.84 4.34
77 78 0.676466 TGCACCGTTTCATGCTAGGG 60.676 55.000 0.00 0.00 42.55 3.53
78 79 1.164411 TTGCACCGTTTCATGCTAGG 58.836 50.000 0.00 0.00 42.55 3.02
79 80 2.987413 TTTGCACCGTTTCATGCTAG 57.013 45.000 0.00 0.00 42.55 3.42
80 81 3.932545 ATTTTGCACCGTTTCATGCTA 57.067 38.095 0.00 0.00 42.55 3.49
81 82 2.818130 ATTTTGCACCGTTTCATGCT 57.182 40.000 0.00 0.00 42.55 3.79
82 83 3.987220 ACTTATTTTGCACCGTTTCATGC 59.013 39.130 0.00 0.00 42.40 4.06
83 84 4.143347 GCACTTATTTTGCACCGTTTCATG 60.143 41.667 0.00 0.00 39.93 3.07
84 85 3.987220 GCACTTATTTTGCACCGTTTCAT 59.013 39.130 0.00 0.00 39.93 2.57
85 86 3.067461 AGCACTTATTTTGCACCGTTTCA 59.933 39.130 0.00 0.00 42.83 2.69
86 87 3.638484 AGCACTTATTTTGCACCGTTTC 58.362 40.909 0.00 0.00 42.83 2.78
87 88 3.726291 AGCACTTATTTTGCACCGTTT 57.274 38.095 0.00 0.00 42.83 3.60
88 89 3.818773 AGTAGCACTTATTTTGCACCGTT 59.181 39.130 0.00 0.00 42.83 4.44
89 90 3.408634 AGTAGCACTTATTTTGCACCGT 58.591 40.909 0.00 0.00 42.83 4.83
90 91 3.181510 GGAGTAGCACTTATTTTGCACCG 60.182 47.826 0.00 0.00 42.83 4.94
91 92 4.010349 AGGAGTAGCACTTATTTTGCACC 58.990 43.478 0.00 0.00 42.83 5.01
92 93 5.393962 CAAGGAGTAGCACTTATTTTGCAC 58.606 41.667 0.00 0.00 42.83 4.57
93 94 4.082787 GCAAGGAGTAGCACTTATTTTGCA 60.083 41.667 14.82 0.00 42.83 4.08
94 95 4.082787 TGCAAGGAGTAGCACTTATTTTGC 60.083 41.667 13.87 13.87 40.52 3.68
95 96 5.627499 TGCAAGGAGTAGCACTTATTTTG 57.373 39.130 0.00 0.00 35.51 2.44
96 97 6.350445 CCAATGCAAGGAGTAGCACTTATTTT 60.350 38.462 2.49 0.00 44.49 1.82
97 98 5.126061 CCAATGCAAGGAGTAGCACTTATTT 59.874 40.000 2.49 0.00 44.49 1.40
98 99 4.641989 CCAATGCAAGGAGTAGCACTTATT 59.358 41.667 2.49 0.00 44.49 1.40
99 100 4.080356 TCCAATGCAAGGAGTAGCACTTAT 60.080 41.667 7.13 0.00 44.49 1.73
100 101 3.263170 TCCAATGCAAGGAGTAGCACTTA 59.737 43.478 7.13 0.00 44.49 2.24
101 102 2.040278 TCCAATGCAAGGAGTAGCACTT 59.960 45.455 7.13 0.00 44.49 3.16
102 103 1.630369 TCCAATGCAAGGAGTAGCACT 59.370 47.619 7.13 0.00 44.49 4.40
103 104 1.740025 GTCCAATGCAAGGAGTAGCAC 59.260 52.381 11.19 0.00 44.49 4.40
104 105 1.630369 AGTCCAATGCAAGGAGTAGCA 59.370 47.619 15.20 0.00 45.92 3.49
105 106 2.012673 CAGTCCAATGCAAGGAGTAGC 58.987 52.381 16.07 4.26 36.69 3.58
106 107 2.012673 GCAGTCCAATGCAAGGAGTAG 58.987 52.381 16.07 12.28 45.77 2.57
107 108 2.113860 GCAGTCCAATGCAAGGAGTA 57.886 50.000 16.07 0.00 45.77 2.59
108 109 2.952714 GCAGTCCAATGCAAGGAGT 58.047 52.632 11.19 11.59 45.77 3.85
116 117 2.176546 CGGCGTTGCAGTCCAATG 59.823 61.111 0.00 0.00 42.21 2.82
117 118 2.281484 ACGGCGTTGCAGTCCAAT 60.281 55.556 6.77 0.00 29.95 3.16
118 119 2.970324 GACGGCGTTGCAGTCCAA 60.970 61.111 16.19 0.00 45.25 3.53
122 123 3.575351 GAGAGGACGGCGTTGCAGT 62.575 63.158 16.19 0.00 40.02 4.40
123 124 2.811317 GAGAGGACGGCGTTGCAG 60.811 66.667 16.19 0.00 0.00 4.41
124 125 3.303135 AGAGAGGACGGCGTTGCA 61.303 61.111 16.19 0.00 0.00 4.08
125 126 2.564553 ATCAGAGAGGACGGCGTTGC 62.565 60.000 16.19 6.82 0.00 4.17
126 127 0.803768 CATCAGAGAGGACGGCGTTG 60.804 60.000 16.19 7.49 0.00 4.10
127 128 0.965866 TCATCAGAGAGGACGGCGTT 60.966 55.000 16.19 0.00 0.00 4.84
128 129 1.378646 TCATCAGAGAGGACGGCGT 60.379 57.895 14.65 14.65 0.00 5.68
129 130 1.358402 CTCATCAGAGAGGACGGCG 59.642 63.158 4.80 4.80 44.98 6.46
130 131 1.067250 GCTCATCAGAGAGGACGGC 59.933 63.158 0.00 0.00 44.98 5.68
131 132 1.974265 TAGCTCATCAGAGAGGACGG 58.026 55.000 0.00 0.00 44.98 4.79
132 133 5.527214 CCTATATAGCTCATCAGAGAGGACG 59.473 48.000 4.04 0.00 44.98 4.79
133 134 5.299279 GCCTATATAGCTCATCAGAGAGGAC 59.701 48.000 4.04 0.00 44.98 3.85
134 135 5.193527 AGCCTATATAGCTCATCAGAGAGGA 59.806 44.000 4.04 0.00 44.98 3.71
135 136 5.448654 AGCCTATATAGCTCATCAGAGAGG 58.551 45.833 4.04 0.00 44.98 3.69
136 137 6.377996 ACAAGCCTATATAGCTCATCAGAGAG 59.622 42.308 4.04 0.00 44.98 3.20
137 138 6.152492 CACAAGCCTATATAGCTCATCAGAGA 59.848 42.308 4.04 0.00 44.98 3.10
138 139 6.071447 ACACAAGCCTATATAGCTCATCAGAG 60.071 42.308 4.04 0.00 40.49 3.35
139 140 5.777223 ACACAAGCCTATATAGCTCATCAGA 59.223 40.000 4.04 0.00 40.49 3.27
140 141 6.035368 ACACAAGCCTATATAGCTCATCAG 57.965 41.667 4.04 0.00 40.49 2.90
141 142 6.425210 AACACAAGCCTATATAGCTCATCA 57.575 37.500 4.04 0.00 40.49 3.07
142 143 6.148480 CCAAACACAAGCCTATATAGCTCATC 59.852 42.308 4.04 0.00 40.49 2.92
143 144 6.000219 CCAAACACAAGCCTATATAGCTCAT 59.000 40.000 4.04 0.00 40.49 2.90
144 145 5.104527 ACCAAACACAAGCCTATATAGCTCA 60.105 40.000 4.04 0.00 40.49 4.26
145 146 5.368989 ACCAAACACAAGCCTATATAGCTC 58.631 41.667 4.04 0.00 40.49 4.09
146 147 5.373812 ACCAAACACAAGCCTATATAGCT 57.626 39.130 4.04 2.91 44.19 3.32
147 148 5.588648 TCAACCAAACACAAGCCTATATAGC 59.411 40.000 4.04 0.60 0.00 2.97
148 149 6.823689 ACTCAACCAAACACAAGCCTATATAG 59.176 38.462 2.46 2.46 0.00 1.31
149 150 6.717289 ACTCAACCAAACACAAGCCTATATA 58.283 36.000 0.00 0.00 0.00 0.86
150 151 5.570320 ACTCAACCAAACACAAGCCTATAT 58.430 37.500 0.00 0.00 0.00 0.86
151 152 4.980573 ACTCAACCAAACACAAGCCTATA 58.019 39.130 0.00 0.00 0.00 1.31
152 153 3.832527 ACTCAACCAAACACAAGCCTAT 58.167 40.909 0.00 0.00 0.00 2.57
153 154 3.290948 ACTCAACCAAACACAAGCCTA 57.709 42.857 0.00 0.00 0.00 3.93
154 155 2.143876 ACTCAACCAAACACAAGCCT 57.856 45.000 0.00 0.00 0.00 4.58
155 156 2.539476 CAACTCAACCAAACACAAGCC 58.461 47.619 0.00 0.00 0.00 4.35
156 157 2.094234 ACCAACTCAACCAAACACAAGC 60.094 45.455 0.00 0.00 0.00 4.01
157 158 3.866883 ACCAACTCAACCAAACACAAG 57.133 42.857 0.00 0.00 0.00 3.16
167 168 5.891451 ACTGCTTCTTTTTACCAACTCAAC 58.109 37.500 0.00 0.00 0.00 3.18
183 184 3.191371 CCATAACCCAACTCAACTGCTTC 59.809 47.826 0.00 0.00 0.00 3.86
184 185 3.157087 CCATAACCCAACTCAACTGCTT 58.843 45.455 0.00 0.00 0.00 3.91
193 194 1.554617 GCCAATTGCCATAACCCAACT 59.445 47.619 0.00 0.00 0.00 3.16
201 202 1.558294 TGCCAATTGCCAATTGCCATA 59.442 42.857 21.96 7.09 45.36 2.74
209 210 1.371932 CTGCCTTGCCAATTGCCAA 59.628 52.632 1.45 1.45 40.16 4.52
210 211 1.837947 ACTGCCTTGCCAATTGCCA 60.838 52.632 0.00 0.00 40.16 4.92
211 212 1.375013 CACTGCCTTGCCAATTGCC 60.375 57.895 0.00 0.00 40.16 4.52
212 213 1.375013 CCACTGCCTTGCCAATTGC 60.375 57.895 0.00 0.00 41.77 3.56
213 214 0.245539 CTCCACTGCCTTGCCAATTG 59.754 55.000 0.00 0.00 0.00 2.32
214 215 0.178953 ACTCCACTGCCTTGCCAATT 60.179 50.000 0.00 0.00 0.00 2.32
215 216 0.896940 CACTCCACTGCCTTGCCAAT 60.897 55.000 0.00 0.00 0.00 3.16
216 217 1.529010 CACTCCACTGCCTTGCCAA 60.529 57.895 0.00 0.00 0.00 4.52
217 218 2.113774 CACTCCACTGCCTTGCCA 59.886 61.111 0.00 0.00 0.00 4.92
261 262 2.654404 GATACGGCTCCGCACGAC 60.654 66.667 8.41 0.00 44.19 4.34
280 286 1.202818 AGGCAGGCGGGAATAAGAATC 60.203 52.381 0.00 0.00 0.00 2.52
281 287 0.846693 AGGCAGGCGGGAATAAGAAT 59.153 50.000 0.00 0.00 0.00 2.40
285 291 0.983905 TACCAGGCAGGCGGGAATAA 60.984 55.000 20.46 0.00 43.14 1.40
292 298 3.124921 CGGTTTACCAGGCAGGCG 61.125 66.667 0.00 0.00 43.14 5.52
296 302 1.071814 GTGACCGGTTTACCAGGCA 59.928 57.895 9.42 0.00 34.50 4.75
297 303 2.030958 CGTGACCGGTTTACCAGGC 61.031 63.158 9.42 0.00 34.50 4.85
298 304 0.389426 CTCGTGACCGGTTTACCAGG 60.389 60.000 9.42 8.03 36.31 4.45
299 305 0.599558 TCTCGTGACCGGTTTACCAG 59.400 55.000 9.42 9.84 35.14 4.00
300 306 1.039068 TTCTCGTGACCGGTTTACCA 58.961 50.000 9.42 0.00 35.14 3.25
301 307 2.153366 TTTCTCGTGACCGGTTTACC 57.847 50.000 9.42 0.00 33.95 2.85
344 350 3.573110 GGGCTAATGAGAGTACCACGTAT 59.427 47.826 0.00 0.00 0.00 3.06
389 395 0.175989 GCACCCTACCTGTCTAGCAC 59.824 60.000 0.00 0.00 0.00 4.40
390 396 0.252057 TGCACCCTACCTGTCTAGCA 60.252 55.000 0.00 0.00 0.00 3.49
391 397 0.175989 GTGCACCCTACCTGTCTAGC 59.824 60.000 5.22 0.00 0.00 3.42
455 464 6.127591 GCATGTAGGTATGGATGGAGTACTAG 60.128 46.154 0.00 0.00 0.00 2.57
457 466 4.528596 GCATGTAGGTATGGATGGAGTACT 59.471 45.833 0.00 0.00 0.00 2.73
462 471 2.990195 AGGCATGTAGGTATGGATGGA 58.010 47.619 0.00 0.00 0.00 3.41
463 472 3.795688 AAGGCATGTAGGTATGGATGG 57.204 47.619 0.00 0.00 0.00 3.51
464 473 4.978099 AGAAAGGCATGTAGGTATGGATG 58.022 43.478 0.00 0.00 0.00 3.51
465 474 5.653255 AAGAAAGGCATGTAGGTATGGAT 57.347 39.130 0.00 0.00 0.00 3.41
466 475 5.450818 AAAGAAAGGCATGTAGGTATGGA 57.549 39.130 0.00 0.00 0.00 3.41
468 477 6.150976 TGACAAAAGAAAGGCATGTAGGTATG 59.849 38.462 0.00 0.00 0.00 2.39
469 478 6.151144 GTGACAAAAGAAAGGCATGTAGGTAT 59.849 38.462 0.00 0.00 0.00 2.73
470 479 5.472137 GTGACAAAAGAAAGGCATGTAGGTA 59.528 40.000 0.00 0.00 0.00 3.08
471 480 4.278419 GTGACAAAAGAAAGGCATGTAGGT 59.722 41.667 0.00 0.00 0.00 3.08
472 481 4.520492 AGTGACAAAAGAAAGGCATGTAGG 59.480 41.667 0.00 0.00 0.00 3.18
477 488 2.036346 GCCAGTGACAAAAGAAAGGCAT 59.964 45.455 0.00 0.00 40.50 4.40
481 495 6.198966 GTGTAATTGCCAGTGACAAAAGAAAG 59.801 38.462 0.00 0.00 0.00 2.62
489 503 2.949177 AGGTGTAATTGCCAGTGACA 57.051 45.000 0.00 0.00 0.00 3.58
504 521 8.163558 ACGCTACGTTATGGATACACTAGGTG 62.164 46.154 0.00 0.00 45.41 4.00
506 523 4.214971 ACGCTACGTTATGGATACACTAGG 59.785 45.833 0.00 0.00 45.41 3.02
507 524 5.354054 ACGCTACGTTATGGATACACTAG 57.646 43.478 0.00 0.00 45.41 2.57
510 527 4.322804 GCATACGCTACGTTATGGATACAC 59.677 45.833 0.00 0.00 46.39 2.90
512 529 4.478699 TGCATACGCTACGTTATGGATAC 58.521 43.478 0.00 0.00 41.54 2.24
513 530 4.456566 TCTGCATACGCTACGTTATGGATA 59.543 41.667 0.00 0.00 41.54 2.59
514 531 3.254903 TCTGCATACGCTACGTTATGGAT 59.745 43.478 0.00 0.00 41.54 3.41
515 532 2.619646 TCTGCATACGCTACGTTATGGA 59.380 45.455 0.00 0.00 41.54 3.41
516 533 3.007979 TCTGCATACGCTACGTTATGG 57.992 47.619 0.00 0.00 41.54 2.74
517 534 5.576337 AAATCTGCATACGCTACGTTATG 57.424 39.130 0.00 0.00 41.54 1.90
518 535 5.983720 AGAAAATCTGCATACGCTACGTTAT 59.016 36.000 0.00 0.00 41.54 1.89
519 536 5.231357 CAGAAAATCTGCATACGCTACGTTA 59.769 40.000 0.00 0.00 38.27 3.18
520 537 4.032900 CAGAAAATCTGCATACGCTACGTT 59.967 41.667 0.00 0.00 38.27 3.99
522 539 3.796717 TCAGAAAATCTGCATACGCTACG 59.203 43.478 2.48 0.00 43.95 3.51
523 540 5.718649 TTCAGAAAATCTGCATACGCTAC 57.281 39.130 2.48 0.00 43.95 3.58
525 542 5.182001 ACTTTTCAGAAAATCTGCATACGCT 59.818 36.000 8.81 0.00 43.95 5.07
526 543 5.393962 ACTTTTCAGAAAATCTGCATACGC 58.606 37.500 8.81 0.00 43.95 4.42
527 544 6.602179 TGACTTTTCAGAAAATCTGCATACG 58.398 36.000 8.81 0.00 43.95 3.06
528 545 8.694394 GTTTGACTTTTCAGAAAATCTGCATAC 58.306 33.333 8.81 6.81 43.95 2.39
529 546 8.412456 TGTTTGACTTTTCAGAAAATCTGCATA 58.588 29.630 8.81 0.00 43.95 3.14
530 547 7.267128 TGTTTGACTTTTCAGAAAATCTGCAT 58.733 30.769 8.81 0.00 43.95 3.96
538 555 9.921637 AGTTTGTAATGTTTGACTTTTCAGAAA 57.078 25.926 0.00 0.00 31.71 2.52
539 556 9.921637 AAGTTTGTAATGTTTGACTTTTCAGAA 57.078 25.926 0.00 0.00 31.71 3.02
540 557 9.921637 AAAGTTTGTAATGTTTGACTTTTCAGA 57.078 25.926 0.00 0.00 34.67 3.27
562 579 4.117685 GTCACACGTGGAAACTCTAAAGT 58.882 43.478 21.57 0.00 37.32 2.66
563 580 3.181774 CGTCACACGTGGAAACTCTAAAG 59.818 47.826 21.57 0.00 36.74 1.85
564 581 3.117794 CGTCACACGTGGAAACTCTAAA 58.882 45.455 21.57 0.00 36.74 1.85
565 582 2.734670 CGTCACACGTGGAAACTCTAA 58.265 47.619 21.57 0.00 36.74 2.10
566 583 2.410785 CGTCACACGTGGAAACTCTA 57.589 50.000 21.57 0.00 36.74 2.43
567 584 3.267900 CGTCACACGTGGAAACTCT 57.732 52.632 21.57 0.00 36.74 3.24
578 595 1.587054 CTCTCCTCCCACGTCACAC 59.413 63.158 0.00 0.00 0.00 3.82
579 596 1.606601 CCTCTCCTCCCACGTCACA 60.607 63.158 0.00 0.00 0.00 3.58
580 597 1.186267 AACCTCTCCTCCCACGTCAC 61.186 60.000 0.00 0.00 0.00 3.67
583 1923 1.152312 ACAACCTCTCCTCCCACGT 60.152 57.895 0.00 0.00 0.00 4.49
597 1937 8.254508 ACTTCTTAGATACATCAAGAGGACAAC 58.745 37.037 14.46 0.00 31.81 3.32
598 1938 8.367660 ACTTCTTAGATACATCAAGAGGACAA 57.632 34.615 14.46 0.57 31.81 3.18
656 2119 9.788960 ACTTTGATCAAGTTTGTAGAGAAAAAC 57.211 29.630 8.41 0.00 43.89 2.43
711 2266 3.192001 CAGTAGCCATTGTTCAGTGCATT 59.808 43.478 0.00 0.00 0.00 3.56
714 2269 1.135575 GCAGTAGCCATTGTTCAGTGC 60.136 52.381 0.00 0.00 33.58 4.40
715 2270 2.907910 GCAGTAGCCATTGTTCAGTG 57.092 50.000 0.00 0.00 33.58 3.66
727 2282 1.144936 CCAGTAGGCAGGCAGTAGC 59.855 63.158 0.00 0.00 41.10 3.58
730 2285 0.905357 CTTACCAGTAGGCAGGCAGT 59.095 55.000 0.00 0.00 39.06 4.40
732 2287 0.252513 TCCTTACCAGTAGGCAGGCA 60.253 55.000 0.00 0.00 38.19 4.75
733 2288 0.466124 CTCCTTACCAGTAGGCAGGC 59.534 60.000 0.00 0.00 38.19 4.85
735 2290 1.134670 GTGCTCCTTACCAGTAGGCAG 60.135 57.143 0.00 0.00 39.06 4.85
738 3856 1.482593 CCTGTGCTCCTTACCAGTAGG 59.517 57.143 0.00 0.00 42.21 3.18
750 3868 1.270907 TCTTCTTCCTCCCTGTGCTC 58.729 55.000 0.00 0.00 0.00 4.26
756 3874 2.376855 CCCTTGTTTCTTCTTCCTCCCT 59.623 50.000 0.00 0.00 0.00 4.20
758 3876 2.375509 TCCCCTTGTTTCTTCTTCCTCC 59.624 50.000 0.00 0.00 0.00 4.30
759 3877 3.560239 CCTCCCCTTGTTTCTTCTTCCTC 60.560 52.174 0.00 0.00 0.00 3.71
760 3878 2.376855 CCTCCCCTTGTTTCTTCTTCCT 59.623 50.000 0.00 0.00 0.00 3.36
761 3879 2.108425 ACCTCCCCTTGTTTCTTCTTCC 59.892 50.000 0.00 0.00 0.00 3.46
762 3880 3.510531 ACCTCCCCTTGTTTCTTCTTC 57.489 47.619 0.00 0.00 0.00 2.87
763 3881 5.133830 TCTTTACCTCCCCTTGTTTCTTCTT 59.866 40.000 0.00 0.00 0.00 2.52
764 3882 4.663592 TCTTTACCTCCCCTTGTTTCTTCT 59.336 41.667 0.00 0.00 0.00 2.85
765 3883 4.981812 TCTTTACCTCCCCTTGTTTCTTC 58.018 43.478 0.00 0.00 0.00 2.87
766 3884 5.397553 TTCTTTACCTCCCCTTGTTTCTT 57.602 39.130 0.00 0.00 0.00 2.52
767 3885 5.397553 TTTCTTTACCTCCCCTTGTTTCT 57.602 39.130 0.00 0.00 0.00 2.52
814 3932 1.522900 AGAGAGAGGGAGGGAGAGAG 58.477 60.000 0.00 0.00 0.00 3.20
815 3933 1.994399 AAGAGAGAGGGAGGGAGAGA 58.006 55.000 0.00 0.00 0.00 3.10
816 3934 3.562182 GTTAAGAGAGAGGGAGGGAGAG 58.438 54.545 0.00 0.00 0.00 3.20
817 3935 2.092321 CGTTAAGAGAGAGGGAGGGAGA 60.092 54.545 0.00 0.00 0.00 3.71
818 3936 2.303175 CGTTAAGAGAGAGGGAGGGAG 58.697 57.143 0.00 0.00 0.00 4.30
819 3937 1.063867 CCGTTAAGAGAGAGGGAGGGA 60.064 57.143 0.00 0.00 0.00 4.20
820 3938 1.342175 ACCGTTAAGAGAGAGGGAGGG 60.342 57.143 0.00 0.00 0.00 4.30
821 3939 2.146920 ACCGTTAAGAGAGAGGGAGG 57.853 55.000 0.00 0.00 0.00 4.30
829 3947 9.021807 CCTAATCCTAATCATACCGTTAAGAGA 57.978 37.037 0.00 0.00 0.00 3.10
960 4096 0.719015 TGGAGGAGGATGAAGAGGGT 59.281 55.000 0.00 0.00 0.00 4.34
961 4097 1.488393 GTTGGAGGAGGATGAAGAGGG 59.512 57.143 0.00 0.00 0.00 4.30
963 4099 1.137872 CGGTTGGAGGAGGATGAAGAG 59.862 57.143 0.00 0.00 0.00 2.85
983 4119 0.250770 GGTGGAGTTGGTGAGGTTCC 60.251 60.000 0.00 0.00 0.00 3.62
984 4120 0.765510 AGGTGGAGTTGGTGAGGTTC 59.234 55.000 0.00 0.00 0.00 3.62
986 4122 1.128188 GGAGGTGGAGTTGGTGAGGT 61.128 60.000 0.00 0.00 0.00 3.85
987 4123 0.838122 AGGAGGTGGAGTTGGTGAGG 60.838 60.000 0.00 0.00 0.00 3.86
988 4124 0.610687 GAGGAGGTGGAGTTGGTGAG 59.389 60.000 0.00 0.00 0.00 3.51
989 4125 0.836400 GGAGGAGGTGGAGTTGGTGA 60.836 60.000 0.00 0.00 0.00 4.02
990 4126 0.838122 AGGAGGAGGTGGAGTTGGTG 60.838 60.000 0.00 0.00 0.00 4.17
991 4127 0.545548 GAGGAGGAGGTGGAGTTGGT 60.546 60.000 0.00 0.00 0.00 3.67
992 4128 1.268283 GGAGGAGGAGGTGGAGTTGG 61.268 65.000 0.00 0.00 0.00 3.77
993 4129 0.252467 AGGAGGAGGAGGTGGAGTTG 60.252 60.000 0.00 0.00 0.00 3.16
994 4130 0.252467 CAGGAGGAGGAGGTGGAGTT 60.252 60.000 0.00 0.00 0.00 3.01
995 4131 1.390125 CAGGAGGAGGAGGTGGAGT 59.610 63.158 0.00 0.00 0.00 3.85
998 4134 2.040278 AGCAGGAGGAGGAGGTGG 59.960 66.667 0.00 0.00 0.00 4.61
1000 4136 2.686835 GCAGCAGGAGGAGGAGGT 60.687 66.667 0.00 0.00 0.00 3.85
1003 4139 3.397439 GCAGCAGCAGGAGGAGGA 61.397 66.667 0.00 0.00 41.58 3.71
1042 4192 0.964358 ATTCTGGCTTCAGCTGTGGC 60.964 55.000 21.80 21.80 41.70 5.01
1043 4193 0.809385 CATTCTGGCTTCAGCTGTGG 59.191 55.000 14.67 8.86 41.70 4.17
1113 4285 2.284405 TCGAAGTGGTCCTCCCCC 60.284 66.667 0.00 0.00 0.00 5.40
1149 4321 2.479566 TGTTGAAGATGAGGAGCACC 57.520 50.000 0.00 0.00 0.00 5.01
1698 4898 1.402456 CCGTTGGTGTAGAAGGACTCG 60.402 57.143 0.00 0.00 0.00 4.18
1989 5189 1.454111 CTGGATCCTCGTCCCGTCT 60.454 63.158 14.23 0.00 37.48 4.18
2169 5372 2.146342 CCATCGCGCAAGGATTAGAAT 58.854 47.619 8.75 0.00 38.28 2.40
2207 5422 2.172483 ATCTATCCGGTGGCCATCGC 62.172 60.000 33.22 8.28 32.70 4.58
2209 5424 1.813513 CAATCTATCCGGTGGCCATC 58.186 55.000 9.72 7.61 0.00 3.51
2292 5507 3.730662 CGCTGCTGTTACAAACAACAAGT 60.731 43.478 0.00 0.00 41.61 3.16
2297 5512 2.875317 TGATCGCTGCTGTTACAAACAA 59.125 40.909 0.00 0.00 41.61 2.83
2298 5513 2.488952 TGATCGCTGCTGTTACAAACA 58.511 42.857 0.00 0.00 39.52 2.83
2299 5514 3.120199 ACATGATCGCTGCTGTTACAAAC 60.120 43.478 0.00 0.00 0.00 2.93
2300 5515 3.073678 ACATGATCGCTGCTGTTACAAA 58.926 40.909 0.00 0.00 0.00 2.83
2329 5544 6.615264 AGCGAAGAAATGAGATACTACGTA 57.385 37.500 0.00 0.00 0.00 3.57
2330 5545 5.502153 AGCGAAGAAATGAGATACTACGT 57.498 39.130 0.00 0.00 0.00 3.57
2331 5546 6.575572 CAGTAGCGAAGAAATGAGATACTACG 59.424 42.308 0.00 0.00 34.57 3.51
2332 5547 6.361214 GCAGTAGCGAAGAAATGAGATACTAC 59.639 42.308 0.00 0.00 34.57 2.73
2333 5548 6.439599 GCAGTAGCGAAGAAATGAGATACTA 58.560 40.000 0.00 0.00 34.57 1.82
2334 5549 5.285651 GCAGTAGCGAAGAAATGAGATACT 58.714 41.667 0.00 0.00 36.41 2.12
2383 5616 7.425577 TTCATCCATTAATCGATCACATCAC 57.574 36.000 0.00 0.00 0.00 3.06
2385 5618 8.260270 TCATTCATCCATTAATCGATCACATC 57.740 34.615 0.00 0.00 0.00 3.06
2388 5621 9.338291 CATTTCATTCATCCATTAATCGATCAC 57.662 33.333 0.00 0.00 0.00 3.06
2471 5731 8.745590 TCACTACTGTAGTATAAATTGCAGACA 58.254 33.333 19.32 0.00 37.23 3.41
2472 5732 9.582431 TTCACTACTGTAGTATAAATTGCAGAC 57.418 33.333 19.32 0.00 37.23 3.51
2486 5746 8.247562 AGCTCAACTTCTTATTCACTACTGTAG 58.752 37.037 13.13 13.13 0.00 2.74
2487 5747 8.123639 AGCTCAACTTCTTATTCACTACTGTA 57.876 34.615 0.00 0.00 0.00 2.74
2489 5749 7.897575 AAGCTCAACTTCTTATTCACTACTG 57.102 36.000 0.00 0.00 30.77 2.74
2490 5750 7.604545 GGAAAGCTCAACTTCTTATTCACTACT 59.395 37.037 0.00 0.00 37.75 2.57
2494 5760 6.428159 TGAGGAAAGCTCAACTTCTTATTCAC 59.572 38.462 0.00 0.00 37.75 3.18
2502 5768 4.516698 TGTTGATGAGGAAAGCTCAACTTC 59.483 41.667 13.49 0.86 44.84 3.01
2519 5785 5.251764 CAGTCTCCTCCTTTTCATGTTGAT 58.748 41.667 0.00 0.00 0.00 2.57
2538 5804 4.323553 ACCTCGGTTTAGATATGCAGTC 57.676 45.455 0.00 0.00 0.00 3.51
2547 5813 3.759581 ACTCACACTACCTCGGTTTAGA 58.240 45.455 0.00 0.00 0.00 2.10
2548 5814 4.516365 AACTCACACTACCTCGGTTTAG 57.484 45.455 0.00 0.00 0.00 1.85
2623 5903 1.361793 CAAATGCAAATTCAGGGCCG 58.638 50.000 0.00 0.00 0.00 6.13
2658 5998 8.416329 GCAATAGGATTACCATTCTTGACAATT 58.584 33.333 0.00 0.00 38.94 2.32
2696 6040 3.770388 GCTAGGAACAAGGGTTAGAGAGT 59.230 47.826 0.00 0.00 37.36 3.24
2703 6047 1.683441 CCGGCTAGGAACAAGGGTT 59.317 57.895 0.00 0.00 45.00 4.11
2776 6177 3.072915 TCCGAATTGCTGTATGGATGGAT 59.927 43.478 0.00 0.00 0.00 3.41
2777 6178 2.437651 TCCGAATTGCTGTATGGATGGA 59.562 45.455 0.00 0.00 0.00 3.41
2778 6179 2.849942 TCCGAATTGCTGTATGGATGG 58.150 47.619 0.00 0.00 0.00 3.51
2779 6180 3.124128 CGATCCGAATTGCTGTATGGATG 59.876 47.826 5.32 0.00 36.40 3.51
2792 6193 4.098960 TCAAGTAAGTAAGCCGATCCGAAT 59.901 41.667 0.00 0.00 0.00 3.34
2811 6212 2.747989 AGAATGTGCAGTGCAGATCAAG 59.252 45.455 26.18 0.00 41.66 3.02
2812 6213 2.786777 AGAATGTGCAGTGCAGATCAA 58.213 42.857 26.18 7.44 41.66 2.57
2813 6214 2.484742 AGAATGTGCAGTGCAGATCA 57.515 45.000 26.18 17.63 41.66 2.92
2814 6215 2.486982 ACAAGAATGTGCAGTGCAGATC 59.513 45.455 26.18 19.47 41.66 2.75
2846 6257 2.288666 TGCACTCCGGAATAGATTTGC 58.711 47.619 5.23 6.36 0.00 3.68
2870 7264 8.610035 ACAACACAAAGAAAAAGTAGTAGTAGC 58.390 33.333 0.00 0.00 0.00 3.58
2898 7298 5.624081 CGTGCGTGGATTACATTACTACTAG 59.376 44.000 0.00 0.00 0.00 2.57
2933 7336 0.464036 TCCATCTCGTCCAATTCCGG 59.536 55.000 0.00 0.00 0.00 5.14
2934 7337 1.134818 TGTCCATCTCGTCCAATTCCG 60.135 52.381 0.00 0.00 0.00 4.30
2939 7342 2.301583 TGACAATGTCCATCTCGTCCAA 59.698 45.455 11.24 0.00 0.00 3.53
2942 7345 5.327091 CATTTTGACAATGTCCATCTCGTC 58.673 41.667 11.24 0.00 0.00 4.20
2944 7347 4.100529 GCATTTTGACAATGTCCATCTCG 58.899 43.478 11.24 0.00 0.00 4.04
2970 7373 0.107800 CTCATCTGCCTCCCACACAG 60.108 60.000 0.00 0.00 0.00 3.66
3007 7410 9.857656 ACAAGTCAAGGATGATTATCACATAAT 57.142 29.630 0.00 0.00 38.01 1.28
3008 7411 9.112725 CACAAGTCAAGGATGATTATCACATAA 57.887 33.333 0.00 0.00 38.01 1.90
3009 7412 7.716560 CCACAAGTCAAGGATGATTATCACATA 59.283 37.037 0.00 0.00 38.01 2.29
3010 7413 6.544931 CCACAAGTCAAGGATGATTATCACAT 59.455 38.462 0.00 0.00 38.01 3.21
3011 7414 5.882000 CCACAAGTCAAGGATGATTATCACA 59.118 40.000 0.00 0.00 38.01 3.58
3020 7423 1.630369 TCCTCCCACAAGTCAAGGATG 59.370 52.381 0.00 0.00 31.25 3.51
3041 7444 1.111277 ACACAGTTTTGGTGCCTTCC 58.889 50.000 0.00 0.00 39.87 3.46
3043 7446 2.693074 CCTTACACAGTTTTGGTGCCTT 59.307 45.455 0.00 0.00 39.87 4.35
3044 7447 2.092103 TCCTTACACAGTTTTGGTGCCT 60.092 45.455 0.00 0.00 39.87 4.75
3047 7450 4.141287 TCCATCCTTACACAGTTTTGGTG 58.859 43.478 0.00 0.00 41.95 4.17
3055 7458 4.999950 GCCATTATCTCCATCCTTACACAG 59.000 45.833 0.00 0.00 0.00 3.66
3063 7466 3.083122 AGCATGCCATTATCTCCATCC 57.917 47.619 15.66 0.00 0.00 3.51
3078 7481 0.249953 TGCAAACCCAGCAAAGCATG 60.250 50.000 0.00 0.00 39.39 4.06
3079 7482 0.688487 ATGCAAACCCAGCAAAGCAT 59.312 45.000 0.00 0.00 46.27 3.79
3080 7483 0.469070 AATGCAAACCCAGCAAAGCA 59.531 45.000 0.00 0.00 46.27 3.91
3082 7485 1.868498 CACAATGCAAACCCAGCAAAG 59.132 47.619 0.00 0.00 46.27 2.77
3099 7503 0.321034 GTCATCCACAGCAGCTCACA 60.321 55.000 0.00 0.00 0.00 3.58
3100 7504 0.321034 TGTCATCCACAGCAGCTCAC 60.321 55.000 0.00 0.00 0.00 3.51
3159 7570 2.694628 TCAAACAGCTGGAAAACATGCT 59.305 40.909 19.93 0.00 35.07 3.79
3189 7600 3.209410 CCAACAGGAACTCATGGATAGC 58.791 50.000 0.00 0.00 42.10 2.97
3278 7704 3.810941 CAGTCACTAACCTAACGCCAAAA 59.189 43.478 0.00 0.00 0.00 2.44
3310 7751 5.108517 ACATCAACACAAGAAAATGCGTTT 58.891 33.333 0.00 0.00 0.00 3.60
3311 7752 4.681744 ACATCAACACAAGAAAATGCGTT 58.318 34.783 0.00 0.00 0.00 4.84
3312 7753 4.305989 ACATCAACACAAGAAAATGCGT 57.694 36.364 0.00 0.00 0.00 5.24
3313 7754 6.363088 ACATTACATCAACACAAGAAAATGCG 59.637 34.615 0.00 0.00 0.00 4.73
3314 7755 7.642071 ACATTACATCAACACAAGAAAATGC 57.358 32.000 0.00 0.00 0.00 3.56
3350 7791 2.124612 ACAGCACAGCACAGCACA 60.125 55.556 0.00 0.00 0.00 4.57
3351 7792 1.512996 ATCACAGCACAGCACAGCAC 61.513 55.000 0.00 0.00 0.00 4.40
3352 7793 1.228033 ATCACAGCACAGCACAGCA 60.228 52.632 0.00 0.00 0.00 4.41
3353 7794 1.500844 GATCACAGCACAGCACAGC 59.499 57.895 0.00 0.00 0.00 4.40
3354 7795 0.321387 AGGATCACAGCACAGCACAG 60.321 55.000 0.00 0.00 0.00 3.66
3355 7796 0.604511 CAGGATCACAGCACAGCACA 60.605 55.000 0.00 0.00 0.00 4.57
3356 7797 1.303799 CCAGGATCACAGCACAGCAC 61.304 60.000 0.00 0.00 0.00 4.40
3357 7798 1.002990 CCAGGATCACAGCACAGCA 60.003 57.895 0.00 0.00 0.00 4.41
3380 7821 7.120285 ACAACAGACAGACCAGATTAATCAATG 59.880 37.037 17.56 7.84 0.00 2.82
3381 7822 7.120285 CACAACAGACAGACCAGATTAATCAAT 59.880 37.037 17.56 2.24 0.00 2.57
3382 7823 6.427853 CACAACAGACAGACCAGATTAATCAA 59.572 38.462 17.56 0.00 0.00 2.57
3383 7824 5.934043 CACAACAGACAGACCAGATTAATCA 59.066 40.000 17.56 0.00 0.00 2.57
3392 7833 0.758734 CCTCCACAACAGACAGACCA 59.241 55.000 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.