>input_sequence_51916
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-------------------------------------------------------ACCT--CCTCCTCCTGCT-------
-----GCTGCCGCTGTCTCTCTCGCGCGCGCGCCACAGCTGAAG----------------------CCAGAATGCAGTCC
AGGCACCGGGTGTTCGCCGAGGACCTGCTCCTGGCGCAGCTGCAGGGGGAGGACCACTTCGACAGCGTGCCGGACTCGCT
GGTGCTCCTCATCTTCAACAAGCTCGCCGACGCGCGCTCGCTCGGCCGCTGCTCCGCCGTCTCGCGCCGCTTCAACGCGC
TCGTCCCGCTCGTCGACGACGCCTGCCTCCGCATCGACCGCGTCATCGCCGC---CGCCGACGCCGACGACGCGCTCGCC
CT---------CCCGCGCCAGCGCGGCGTCCTCTCCGGCCTCCTCAAGACCGTGCTCCTCGCCGTGCTCAAGCCCTTCGG
CGGACACTGCGACGCCGGGGCCAGGCCCGCCGGCCACGCGGCCGCCAAGCACGCGCCG----CACCACTCGCCCGCGCAG
GTGCTCAAGAACTTCAGCAGCATCCGCAACCTCCGCATGGAGCTCCCAGTCTCCGACGTCGGCACCGACGACGGCGTCCT
CCTCAGGTGGAAGGCCGTCTTCGGCACCACGCTCCAGAGCTGCGTCATCCTGGGCGGGACAAGGCTGGAGCACGCCTCGC
ACCCGCCCTCCGCCTCCGCCTCCGCCTCCGGGGCCCCGGACGAGCACGACGCC------------TCGCAGGGGGACGAC
GACAATGGGAGCATACCCGAGTCCTTCTACACCAACGGCGGGCTGAAGCTGCGCGTGGTGTGGACCATCAGCTCGCTCAT
CGCTGCGGCCACCAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACCCTGGAGCGCGTGGAGCTGACGGACG
CGCACGGCCAGGGCACGCTGTGCATGGAGCGCCCGCAGCTCAAGGAGTTCACCGACAAGCCGCTCGCCGCCGCCGCCGCC
GCCGCCAACCGCACGCAGGTGCCGGCCTGCAACATGAAGCTCCGATACGCGCCCATGCTGGAGCTGTCAGACGGGACGAG
GATCCAGGGCGCGACGCTGGTGGTGATCAAGCCCGTGGGCGA---GGCCGGCGGCATCGGCGGTGGGCGCAAGGAGCTGG
ACGAGTTCGTGGCCGGCGCCTTCGACGGGCCCTTCAGGGAGGCCGTGGCGATGCTCAGCAAGCGCCGCACCTACCTGCTA
GAGATGAACGGATTCTAATC------------CTTGCGCGATGGCGATGGCGATGGCGATGGCGATGGCCACCGGATAGA
TTGCTCTGCTCTGTTGGCTTCAGCTCTGCTCAGTGGCAGGCAGGCAGGCAGGCACACCGAGGTGTTACTTGTTGTTTGTA
ACAGCAGCGATCATGTCTCATACTACGTAGTATCTCATTTCTTCGCTACTGCCTTAGCATC------------------A
TTTCGTTGCGGTGATGTGATG--TGATCGATTAATGGATGAATGAAATGAAGTGATACGA--------------------
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>chr4A_1_TraesCS4A01G127600
AAGCCGTACACACCGACCCAAACAAACAAACTGCGTGTTGGTTTAGGTCGACACGTTGGAGTTGCTCTAACAGCCTACCC
TAGCATGAAACGGTGCAAAATAAGTGCTACTCCTTGCATTGGACTGCAACGCCGTCCTCTCTGATGAGCTATATAGGCTT
GTGTTTGGTTGAGTTGGTAAAAAGAAGCAGTTGAGTTGGGTTATGGCAATTGGCAATTGGCAAGGCAGTGGAGTGGAGTC
ACACTGTGTGCGTGGGCGTGCGTCGTGCG-----GAGCCGTATCCGATTCTTATTCCCGCCTGCCTGGTAAACCGGTCAC
GAGAAAAGCAGGCCCGCCTTTTTGCTTGGATACGTGGTACTCTCATTAGCCCAACCCCAACGGAAATGAGCACTGTG-CT
AGACAG--GTAGGGTGCACATTTTCGTGCTGGGAGAAAATGAAGTTGCACGTTTTTGTACGTCCTAGTACTCCATCCATA
CC--TACA---TGCCTTTCTTTTGTCA---CTGGCAATTACACCTAGTGTATCCATAACGTAGCGTATGCAGATTTTCTG
AAAAGTCAAACATTACAAACTTTAGAGTTTCCACGTG-------------------------------------------
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TGACGTGGGAGGAGAGGTTGTCCTCTTGATGTATCTAAGAAGTAAGAATATGTATTTA----------------------
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---------------------ATATTCTAGATGTATAAGTTTTTCTCTACAAACTTGATCAAAGTTTATGAAGTTTGATT
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------------TTTTTTTTAAAAAAATGCACTGAACAATGGCTACTGCC------------------------------
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-------------TGCCTACTGGTAAGGAGCACAGGGAGGAAGAAGAAACAAGGGGAGGTAAAGAAAAGAAGAAGAAAAA
TGGTCGTCCTGCTCTCTCCCTCCCTCTCTCTTAACGGTATGATTAGGATTAGGGTGGTGCCCGACAGCGAGTCATGGAGT
TAAACAAGAGGAGAGG---------TCTCGCT---------CGCGCGCCTTTATAACTCTCTCCCCCTCGCCATCCATTA
CTCACCATCACCACCACCCTCTTCATCCTCCTCCAACCGGAACCTCACCAACTCCACCT--CCTCCTCCTGCT-------
-----GCTGCCGCTGTCTCTCTCGCGCGCGCGCCACAGCTGAAG----------------------CCAGAATGCAGTCC
AGGCACCGGGTGTTCGCCGAGGACCTGCTCCTGGCGCAGCTGCAGGGGGAGGACCACTTCGACAGCGTGCCGGACTCGCT
GGTGCTCCTCATCTTCAACAAGCTCGCCGACGCGCGCTCGCTCGGCCGCTGCTCCGCCGTCTCGCGCCGCTTCAACGCGC
TCGTCCCGCTCGTCGACGACGCCTGCCTCCGCATCGACCGCGTCATCGCCGC---CGCCGACGCCGACGACGCGCTCGCC
CT---------CCCGCGCCAGCGCGGCGTCCTCTCCGGCCTCCTCAAGACCGTGCTCCTCGCCGTGCTCAAGCCCTTCGG
CGGACACTGCGACGCCGGGGCCAGGCCCGCCGGCCACGCGGCCGCCAAGCACGCGCCG----CACCACTCGCCCGCGCAG
GTGCTCAAGAACTTCAGCAGCATCCGCAACCTCCGCATGGAGCTCCCAGTCTCCGACGTCGGCACCGACGACGGCGTCCT
CCTCAGGTGGAAGGCCGTCTTCGGCACCACGCTCCAGAGCTGCGTCATCCTGGGCGGGACAAGGCTGGAGCACGCCTCGC
ACCCGCCCTCCGCCTCCGCCTCCGCCTCCGGGGCCCCGGACGAGCACGACGCC------------TCGCAGGGGGACGAC
GACAATGGGAGCATACCCGAGTCCTTCTACACCAACGGCGGGCTGAAGCTGCGCGTGGTGTGGACCATCAGCTCGCTCAT
CGCTGCGGCCACCAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACCCTGGAGCGCGTGGAGCTGACGGACG
CGCACGGCCAGGGCACGCTGTGCATGGAGCGCCCGCAGCTCAAGGAGTTCACCGACAAGCCGCTCGCCGCCGCCGCCGCC
GCCGCCAACCGCACGCAGGTGCCGGCCTGCAACATGAAGCTCCGATACGCGCCCATGCTGGAGCTGTCAGACGGGACGAG
GATCCAGGGCGCGACGCTGGTGGTGATCAAGCCCGTGGGCGA---GGCCGGCGGCATCGGCGGTGGGCGCAAGGAGCTGG
ACGAGTTCGTGGCCGGCGCCTTCGACGGGCCCTTCAGGGAGGCCGTGGCGATGCTCAGCAAGCGCCGCACCTACCTGCTA
GAGATGAACGGATTCTAATC------------CTTGCGCGATGGCGATGGCGATGGCGATGGCGATGGCCACCGGATAGA
TTGCTCTGCTCTGTTGGCTTCAGCTCTGCTCAGTGGCAGGCAGGCAGGCAGGCACACCGAGGTGTTACTTGTTGTTTGTA
ACAGCAGCGATCATGTCTCATACTACGTAGTATCTCATTTCTTCGCTACTGCCTTAGCATC------------------A
TTTCGTTGCGGTGATGTGATG--TGATCGATTAATGGATGAATGAAATGAAGTGATACGACATTACCACATAGTACTTAC
-------------------------TATATCATTGTTCTCAATATAAAATTGTCTGCAATTTATACTACA------GTAG
TGAATAAGAAGTTGAGCTTTCCTCATCAACATGAAAAGGAGGAGACTGCATATC-------TAAACCGAGGTAGTGTGAG
TTTGTGACCAGGAAACTA-AACCACTGGTGCTTCAGG------ATAAGCTCCCACGTTGGTGCG----------------
------------------------------------------GC--CCTGAATTTGCATTTGCTCCTATCCTAATCCAA-
TTGTCAAGAATGGTAATCCT---ATTGCTTCTCTCTTGCACTCTCTAACCCTTG----TTCCTAGCCGGACTGAGATGAG
----------------------------------------------------AGTTACTTA-GTGTTGGGGATAAGCTTT
CCGCGATGCACACAATATCCATCCATACAGCAATTCGGATCGGCTTACTTACTTGATCTGCACTGCACATTCTTGTGC--
--------CAGACTAGGCAAA-----------------------------------------------------------
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--------------------------------------------TCTATTCCGGAGTGCATATGCTACTACT------AC
TTTTTCTTTGTGTTGTACTAG---TAGTAATGTAATCCACGCACGCATTATTGACCCGGAATTGGACGAGATGGACATTG
TCAAAATGCTTGCTGTGTGGGAGGCAGATGAGATGCCTTGATCTTTATTATTATGTGATAATCATCCTTGACTTGTGGGA
GGAGGAAGGCACCAAAACTGTGTAAGGATGGAGATAATGGCATGCTTTGCTGGGTTTGCA-TTG-------TGAGCTGCT
GTGGATGACATGTGTGTGTCGCGATTACAGAGGGGGTTAGGCTAGACATAGCATGTTTTCCAGCTGTTTGATTCCTTGGG
CTATCCATGA---------------GTTCCTGTTGGTTACCAACCACCGGTGCTAGTGATTGTTGGTTGGATGAGCATGC
ATTTTGGTAGCACTATATATATTTTTTGGCGTTAGGTTAG---------------TGACTGCGTAAAACAAAACGCATTT
TCTTGTGTTGATGTAATGTAATGGAGCAGCTGTGCTGTGCTGTGCTGTGATCCTGGATTTCATTGATTAATCTGGTCTGT
CTGTTGTGGAGGAGCTGGTGGAGGAG
>chr4B_159
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------------------------------------------------------------------------------TT
GTGTTTGCTTGAGTTGGTAAAAA--AGCAGTTGGGTTGGGTAATGGCAAGGCAA----GGCAAGGCAGTGGAGTGGAGTC
ACACTGTGTGCGTGTCCGTGCATCGTGGCCGAGCGAGCCGTATCCCGTTCCTATTCCTGCCGT----GTAAACCGGTCAC
GAGAAAAGCAGGCCCGCCTTTTTGCTTGGGTACGTGGTACTCTCATTAGCCCAACCCGAACGGAAATGACTACTCCTACT
ACACAG--GTAGGGTGCACATTTTCGTGTTGGGAGAAAATGAAGTTGCACGTTTTTGTACGTA---GTACCGATCCATCG
ACGATACT---TGCTTTTCTTTCGTCATCACTGGCAATTAAAAGTACGTACATAGGCAGCTCCGCCCTGACTGAAAAGGC
TACTCTTCGTAAGGCCAACTCCACCGCGGAACCCCATCTTGTCCGGTTTTATCCGTATGAAGTCAAATCTGGTCCAGTGG
GCACACCCAAACGGACAAGCACGTTCGTTCGCGTCCTTTTTATCCGCCTCAACCCTAAACCTAGACCAAAATTGAGCCAC
GAATGCTCCCGAACGGACAGAAAACGGACGCTTTTCTCCTCCCTCTCGTCCGCTCCCGTCCGCCCCTGTCCACCCTCTGG
CCCACGAATCAGTGAGAGACGAGCAGGCCAGCCCGTCCGGCGCGGCGCGGGCACGGGGGCGGGGGCGCTGCCAACCCGGC
CGGCGAGGCGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCGGGGGCGCGAGGCG
GCATAGCGAGTTCGGGGCGAGGCGGGACGGACCGTTTTTGGGTGCCAGGGGCCTTCTGCGTGTTGGGCGTCGATGACTCA
TCCTCGTGTCCGCCCCCCGGACGTCCGCCAAATCCCACCCTAAACGGACAAAAGCGGACGTCCGGATGGTGTCTTGCGGT
GGAGTTGGCCTAATTTACTCCTACACGGTG--------------------------------------------------
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-----------------------------------------------------------------------------GAA
TGGCGTGGGAGGAGAGAGTGTTGTCCACTTTTGGGTTTGCAGGGTAGGACTCGGTGAGTGTGGTAATGTTGCTGGTGGCC
AAGTTGCAATTAAGAGCATCTTTAATACAAGATGCAAAATAGAAGATTACATCTTTAAAAACATTTTCTACAACT-AAAA
AACAACTTCAACTGAAGATGTATATTAAAGATGTAAAACAACAACTTCAATAAATAACGCAAACGGAGATGTAAAATTAT
ACTCCTTCAAATAGTACTTCATTTCAAACATATAATTCAAAGATAGCAAATTCGACTACTACTTCATTTCAGACAAAAAT
AATTGAACATAGTTTTAATTAAAAACATAAATCAAACTACTACTTCAACTAATTCAAGCTACTGCATTCATCAAGTTACT
ATTACTACTAGT---TCAAACTACTATTTGAATTACATCGAAGATAAAACTACTCATCATTGGAGCTCTTGAATAGCTCT
CTGAACTCATCCTTTGCCGGGTCGTGGCACCCCTCGTCCTCCTCCTCCGAGTCACCCCAGTCCCCCACCAAGGACTCGAC
GGGGATCATCGTCGAGGGACCGGCCTCGACGTCCTACTCCTACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
TCGTCTTCTTCCTCTGCTCGGCGTCGCGCTTCCAGAAGTACTCCTGCTCGGCCTGAACATACTCCGGATTTCTCCAGCTC
AAACCTCACCATCGTCGCCTCGTCGCTATCGTCGGGACCAATGACAATGACCGGCCTCTTCTTCGTCTTCTTCTTTGGTA
TCTCCTCCATTCAAATGCCCACCGGCACTAGGAACTCTGCATCCGCCTGGGTCTCGATCTCCGGGAAGTTGAGGTCCGTC
TTTGGCCTCCCGGCACGCCACACTGCCACGTCATAGGCACGTGCGGCCTTGTCGGCGGTGGTGTAGGTACCAAGCCAGAA
GCGGTGACGGACATCGGAGAACTCAATGCCGAAATTGTCGGATGGCTTCGACCGCACGTCGAAGAACCCCGTCTTGCTCT
TTGAGATCTTCTTCGGCGACATGGCGGTGGCGGGGTGGCGGCAATGGGCAAGGTGGCGGTGCGGGGCGGGCGGCGGTGGT
GTGG----------------------------------------------------------------------------
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-------------------------------------GGCGGCCGTGCGGGGCTGCGGGCGGCGCCGGCGGTCGGTGCAG
TGGTGCGGGGTGGGCGGTGCGATGGTGGAATCGAGCGGCAGCGGTGCGGGGACGCGGCGATGGTGGTGGAATCGAACGGC
GGCAGCTGGCTGTCAAAACGTGGCGGAACCGGCGGC---------GGAGTGTGGCGGCAGTGTGGCGGGAAGAAGAAGA-
-TGGGGTTGCGGGAGGAAATGGAACGGCGGTTGGCGGTTGGCGCACGGCTGGCGTTTTTACATCTTCAGTCGGTGAAGAT
GCAAATTTACATCACG------ACCTGAAGATGTAAATTTCTTTTTTGCATCTACATCATCCGTGGGGTTTTGGACCTCG
ATGGTGTTGCATCTACGTCTTGTG---------TAAGTAGTGCTAAGAAACGCTAGAGGCGACGAAGATGAATAATAAAT
AAACTATAAACAGTGGCTACTGGTAAGAAGCACGGCAGAT-----GAAACAAGGGGAGGTAAAGAAAAGAAGAAGAAAAG
TGGTCGTCCTG--------CTCCCTCCCTCTTAACGGTATGATTAGGATTAGGGTGGTGCCCGACAGCGAGTCATGGAGT
TAAACAAGCGGAGAGGAGAGGAGAGGAGAGGGTCCCTCGCCCGCGCGCCTTTATAACTCTCTCCCCCTCGCCATCCATTA
CTCACCATCACCACCCTCTCCTTCCTCTTCCTCCAACCTCAC---------CTACTCCCTGCCTCCTCCTGCT-------
-----GCTGCTGCTGTCTCTCTCGCGCGCGC--CACAGCTGAAGCGGAGCAGAGCAACCCTCCAGTCCAGAATGCAGTCC
AGGCACCGGGTGTTCGCCGAGGACCTGCTCCTCGCGCAGCCGCAAGGGGAGGACCACTTCGACAGCGTGCCGGACTCGCT
CGTGCTCCTCATCTTCAACAAGCTCGCCGACGCGCGCTCGCTCGGCCGCTGCTCCGCCGTCTCGCGCCGCTTCAACGCGC
TCGTCCCGCTCGTCGACGACGCCTGCCTCCGCATCGACCGCGTCATCGCCGC---CGGCGACGCCGACGACGCGCTCGGC
GTCCCGGGCGGCCCGCGCCAGCGCGGCGTCCTCTCCAGCCTCCTCAAGACCGTGCTCCTCGCCGTGCTCAAGCCCTTCGG
C---CACTGCGACGCCGGCGCCAGGCCCGGCGGCCACGCGGGCGGCAAGCACGCGCCG----CACCACTCGCCCGCGCAG
GTGCTCAAGAACTTCAGCAGCATCCGCAACCTCCGCATGGAGCTCCCCGTCTCCGACGTCGGCACCGACGACGGCGTCCT
CCTCAGGTGGAAGGCCGTCTTCGGCACCACGCTCCAGAGCTGCGTCATCCTCGGCGGGACCAGGCTGGAGCACGCCTCGC
ACCCGCACGCGCCCTCC---------------GCCCCGGACGACCACGACGCCTCGGCCCCGCAGTCGCAGGGGGACGAC
GACAATGGGAGCATACCGGAGTCGTTCTACACCAACGGCGGGCTGAAGCTGCGCGTGGTGTGGACCATCAGCTCGCTCAT
CGCCGCGGCCACCAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACCCTGGAGCGCGTGGAGCTGACGGACG
CGCACGGCCAGGGCACGCTGTGCATGGAGCGCCCGCAGCTCAAGGAGTTCACCGACAAGCCGCT---CGCCGCCGCCGCC
GCCGCCAACCGCACGCAGGTGCCGGCCTGCAACATGAAGCTCCGGTACGCGCCGATGCTGGAGCTGTCGGACGGGACGAG
GATCCAGGGCGCGACGCTGGTGGTGATCAAGCCCGTGGGCGA---GGCCGGCGGCATCGGAGGTGGGCGCAAGGAGCTGG
ACGAGTTCGTGGCCGGCGCATTCGACGGGCCCTTCAGGGAGGCCGTGGCGATGCTCAGCAAGCGCCGCACCTACCTGCTA
GAGATGAACGGCTTCTAATCCTGTGACCTGACCTTGTGCGCGCGAGATGGCGATGGCCACC----------------AGA
TTGCTCTGCTCTGTTGGCTTCAGCTCTGCTCAGTGGCAGGCAGGCACACTAG-----CGAGGTGTTCCTTG----TTGTA
ACAGCAGCGATCATGTCTAGTCA-------TACCTCATTTCGTCGCTACTGCCTTTGCATC------------------A
TTTCGTTGCGGTGATCTCATCA--GATCGATTAATGGATGAATGAAATGAAGTGATACGACATTACCACATACTACTACA
GTACATCATCCAATGAAGTGTTGTTTATATCATTGTTCTCAATACTTACTATAAAAAATGTCTTAAGATTTACGTACCAC
TGAATAAAAAGTTGAGCTTTCCTCCTCAACATGAAAAAGAGTAAACTGCATAGATAGATATTAAACCGAGGTGGTGTGAG
TTTGTGAGCAGGAAACTTTAACCACTAGTGCTTCAGGCGGATAATATGCT-CCACGTTGGTGTGGGAATGCTTTCTTTCT
TCTTGTCATGAAATGAGAGATTTAGCTCACATCAATCCGTCTGC--CCCGAATTTGCATTTGCTCCTATCCTAATCCTAT
TTGTCAAGAATGTTAATCCTCTTATTGCTTCTCTCTTGCGCTCTCTGACCCTTGCTTGATTCAATCCCCTAGTATTG---
------------------------CTACCATATAATGCCATGCCAGCTTTGCAGTTACTTA-GTGTTTGGGATAAGCTTT
CCGTGATGCACTCAAT----ATCCATACAGTATTTCGGATCGGCTTACTTA----ATCTGCACTGCACATTTTTGTGCGT
CTGCACGCCAGACTAGACAAA-----------------------------------------------------------
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--------------------------------------------CCTATTCCGGAGTGCATAT---ACTACT------AC
GTTTTCTTTGCGTTGTAGTACGACTAGTAATGTAATCCACGCATGCATTATTGACTGGGAACTGAAGGAGATGGACATTG
TCAAAATGCTTGGTGCGTGGGAGGCAGTTGAGATGCCCTGGTCTTTAT------GTGATAATGC-CCTTGACTTGTGGGA
GGAA--TGGTACCAAAAATGTGTAAAGATGGAGATAATGCATGA-TTTGCTGGGTTTGCATTGCATCATTGTGAGCTGCT
GTAGATGACATGTGTGTGTCGCGATTACAGAGGTGATTAGGCTAGACAT-GCATGTTTTCCAGCTGTTTGATTCCTTGGC
CTATCCATGAGGGAGAGCTTGAATTGTTCCTGTTGGTTACCAACCACCAGTGCTAGTGATTGTTGGATCAGCATTGTGGT
G----------TA---------TATTTCGCGTTAGGTTAGGTGACGACGCATGCATGACTGCGTAAAACA-----CATTT
TCTTGTGTTGATGTAATGGAGCAGGCGAGCA-------GCTGTGCTGTGATCCTGGATTT----GATTAATCCGGTCTGT
CTGTTGCGGAGGAGCTGGTGGAGGAG
>chr4D_342
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--------------------------TGGGTACGTGGTACTCTCATCACCCCAACCCCAACGGAAATGAGTACTCCTACT
AGACAGCCGTAGGGTGCACATTTTCGTGCTGGGAGAAAATGAAGTTGCACGTTTTTGTACGTCGTCGTACCGATCCATCC
ACGATACTACTTGCTTTCCTTTCCTCATCACTGGCAATTAAAGGTACGTACATAGGCAGCTCCGCCCTGACTGGAAAGGC
TACTCTTCG-----------------------------------------------------------------------
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----------TAATTTACTCCTACACGAGGATGGTGCATTCACTACTCCGGCAGGTAACTGTGCCATATAGGAGTACCCA
TCTTTTCAGTGCATCGTCGGATATTCATATTTGATGAGGTGATTTGGTAGTGGTACGATTAACCAAGGGCAGGGAGGGCT
ATATCCCCCGAAAGTGCTCTCTACACCCGATCGACCGCATCCCATAGAATTTGTGGCAGCAGCAAAGCCAAGATACTGCC
GTCGCGCCACGCTGCGTGAAGTAAGTAAACTCAGCCGTCATTTGAGTTGCCACAGTGGAATGGCGTGCGAAATTGCTTTG
CACACGATCTTTGTACATACGATCTGACGTGTCTTCATTAGACAACATGCTGCATTGGTTTTCTTTTCCCGATGGAGCTG
GTTGATTGGACGAAAGGACATGCAACCGCACATCGTATGTGTTTCCGACATGAAAATGTCGTACGTATAGCAGCTCTGAA
TGGCGTGGGAGGAGAGAGTGCCGTCCACTTTTGGGTTTGCAGGGAAGATCTCGGTAAGTGCGGTAATGTTGCAGGTTGCA
AAGTTGCGATTAAGAGCATCTTCAATACAAGATGTAAAATAGAAGATTACATCTTTAAAAATGTTTTTTACAACTAAAAA
AGCAACTTCAACAGAAGATGTATATTAAAGATGTAAAACAACAACTCCAATAAATAACGCT-ACGGAGATGTAAAACTAT
ACTGCTTCAAATAGTACTTCACTTGAAACATATAATTCAAAGATAGCAAATTCGACTACTGCTCCATTTCAAACAAAAAA
AATTGAACATAGTTCTAATTAAAAACATAAATTAAACAACTACTTTAACTAATTCAAGTTACTACATTCATCAAGTTACT
ACTACTAGTAGTAGTTCGAACTACTACTTGAACTACATCGAAAATAAAACTACTCATCATCGAAGCTCTTGAACAGCTGT
CAAAATGCATCCTTACCTGGATCGTCGCACCCCTCGTCCTCCTCCTCCGAATCACCCCAGTCCTCGTCCGAGGACTCGAC
GGGGATCATCATCGAGGGGGCAGCCTC---------------CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CATCCTTCTTCTTCTGCTCGGCGTTGCGCTTCCAGAAGTACTCCTGCTCGGCCTGAACATACTCCAGATTCTCCCACGTG
-AACCCCACCATCGCCGCCTTGTTGCTATCGCCGGTACCAACGACAATGACCGGCCTCTTCTTCATCTTCTTCTTTGGTA
TCTCCTCCATTCGAATGCCCTCCGGCACTAGGAACTCCACATCCGCCTGAGTCTCGATCTCCGGGAAGTTGAGGTTCGTC
TTTGGCCTCCCGACACGCGACACTGCCACGTCATAGGCACGTGCGGCCTTGTCGGCGGTGGTGTAGGTGCCGAGCCAGAA
GTGGCGACGAGCGTCGGAGAACTCAATGCCGAAATTGTCTGATGGCTTCGGCCACACGCCGAAGAACCCCGTCTTGCTNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCGGCGGCGGTGCGGGGATGCGGGAGGGGCGGTG-----------
------------------GCGGTGGTGGAATCGAATGGCAGCGGAAAAACG-------------------------CGGC
GGTGGCTGGCGGTCGAAACGCGGCGGAACCGACGGCAGGGGTGCTGGAGGGCTCCGGCGATGGGGCGGCCGGAGGAAGAA
ATGGGGTTGGGGGAGGAAATGAAACGACGGTTGGCGGTTGGCGTGTGGCTGGCATTTTTACATCTCCAGTCCGTGAAGAC
GCAATGCATCACGATGTGTTGTACCCGAAGATGTAAAC----TTTTTGCATCTACATAATCGGTTGAAAAGGGGGGTTTG
GATCGTGCAAGTTAGTTATTTTTACGTCTTCTCTAAGTAGTGCTAAGAAACGCTATAGGCGACGAAGATGATTAAAC---
------TAAACAATGGCTACTGGTAAGAAGAACGGCAGAT-----GAAACAAGGAGAGGTAAAGAAAAAAAGAAGAAAAA
TGGTCGTCCTGT--------TCCCTCCCTCTTAACGGTATGATTAGGATTAGGGTGGTGCCCGACAGCGAGTCATGGAGT
TAAACAAGAGCAGAGGGAGGAGAGGTCTCGCT---------CGCGCGGCTTTATAACTCTCTCCCCCTCGCCATCCATTA
CTCACCATCACCACCCTCTTCTTCCTCTTCCTACAACCTCAC---------CTACTCCA--CCTCCTCCTGCTCCTGCTG
CTGCTGCTGCTGCTGTCTCTCTCGCGCGCGC--CACAGCTGAAGCGGAATCAGCAAGCTCT----TCCAGAATGCAGTCC
AGGCACCGGGTGTTCGCCGAGGACCTGCTCCTCGCGCAGCTGCAAGGGGAGGACCACTTCGACAGCGTGCCGGACTCGCT
CGTGCTCCTCATCTTCAACAAGCTCGCCGACGCGCGTTCCCTCGGCCGCTGCTCCGCCGTCTCGCGCCGCTTCAACGCGC
TCGTCCCGCTCGTCGACGACGCCTGCCTCCACATCGACCGCGTCATCGCCGC---CGGCGACGCCGACGACGCGCTCGGC
GCCTCGGGCGGCCCGCGCCAGCGCGGCGTCCTCTCCAGCCTCCTCAAGACCGTGCTCCTCGCCGTGCTCAAGCCCTTCGG
C---CACTGCGACGCCGGCGCCAGGCCCGCCGGCCACGCGGGAGGCAAGCACGCGCCG----CACCACTCCCCCGCGCAG
GTGCTCAAGAACTTCAGCAGCATCCGCAACCTCCGCATGGAGCTCCCCGTCTCCGACGTCGGCACCGACGACGGCGTCCT
CCTTAGGTGGAAGGCCGTCTTCGGCACCACGCTCCAGAGCTGCGTCATCCTCGGCGGGACAAGGCTGGACCACGCCTCGC
ACGCGCCCTCCGCCTCCGT------------GGCCCCGGAAGAACACGACGCC------------TCGCAGGGGGACGAC
GACAATGGGAGCATACCGGAGTCCTTCTACACCAACGGCGGGCTGAAGCTGCGCGTGGTGTGGACCATCAGCTCGCTCAT
CGCCGCGGCCACCAGGCACTACCTCCTCCGCGAGATCGTCAAGGAGCACCCCACCCTGGAGCGCGTGGAGCTGACGGACG
CGCACGGCCAGGGCATGCTCTGCATGGAGCGCCCGCAGCTCAAGGAGTTCACCGACAAGCCGCT---CGCCGCCGCCGCC
GCCGCCAACCGCACGCAGGTGCCGGCCTGCAACATGAAGCTCCGGTACGCGCCGATGCTGGAGCTGTCGGACGGGACGAG
GATCCAGGGCGCCACTCTGGTGGTGATCAAGCCCGTGGGCGA---GGCCGGCGGCATCGGCGGTGGGCGCAAGGAGCTGG
ACGAGTTCGTGGCCGGCGCCTTCGACGGGCCCTTCAGGGAGGCCGTGGCGATGCTCAGCAAGCGCCGCACCTACCTGCTA
GAGATGAACGGCTTCTAATCATGTGACCTTCCTT----CGTGCGCGATGGCGATGGCGATGACAATGGCCACCGGATAGA
TTGCTCTGCTCTGTTAGCTTCAGCTCTGCTCAGTGGCAGGCAG----GCAGGCACACCGAGGCGTTCCTTG----TTGTA
ACAGCAGCGATCATGTCTCATAC------GTATCTCATTTCTTCGCTACTGCCTTAGCATCCTTGTAATCGCAAGCATCA
TTTCGTTGCGGTGATCTCTCATCTGATCGATTAATGGATGAATGAAATGAAGTGATACGACATTACCACATACAGTACAT
----------CAATGAAGTGTTGTTTATATCATTGTTCTCAACACAAAAAAATGTC-------TAAGATTTACTACGTAC
TGAATAAAAAGTTCATCTTTG---CTCAACATGAAAAGGAGGAAACTGCATAGATAGTAAACCTACCGAGGTAGTGTGAG
TTCTTGACCAGGAAAC-TTAACCACTGGTGCTTCAGG------ATAAGCT-CCACGTTGGTGTGGGAATGCTTTCTT---
----GTCATGAAATGAGAGATTTAGCTCACATCTATCCGTCTGCCCCCTGAATTTGCATTTGCTCCTATCCTAATCCTG-
TTGTCAAGAATGGTAATCCACTTATTGCTTCTCTCTTGCGCTCTCTGGCCCTTGCTTATTCCTAGCCGGACTGAGATGAG
ACAATCAATCCCCCTCCCCTGGTACTACCATATACTGTCATGCCAGCTTTGCAGTTACTTAAGTGTTGGGGATAAGCTTT
CCGCGATGCACACAAT----ATCCATACAACATTTCGGATCGCCTTACTTA----ATCTGCACTGCACATTCTTGTGCGT
CTGCACGCCAGACTAGACAAATCGATCCGCCTACTCCACCACGGCAGCCGCCGCCCTGTCTCGGGCTTTTTTGGCGTTGA
GCCTGTTCCGCCGGTCGGTGGTGACAGCTTTCCGGCGGTGAACCTCCGCCTTCCAGTCAGCGTTTGACATGGCAAGGGGT
TTGGACGGCGGCGCCCTCTGGTTCCTCTGCTTCGGCTAGGTGGCGTTGGCATCGGTAGCGGCTCGAGGGGCCGTGTACTT
CTTCGGTGACATGGCGGCCGGATGGAGGGGAGAGGGAGGAGAATGGCGGGAGAAGGGGAGATGGAGGGAAACGGAGGTGG
AAAAGCTGAGGGATCGGCGGGAAAAGGTCTTTCTCTCGTCGACAGAGCGGACCCACGCGCCTTTTCACTTCGGCCGGCGT
CCCCAGGGGCTTGGGTTCGGCTCGGGTTCGCCAGCTGTTATTTCGACCCAAACCGGCGGTAAACGAGATCCTGGGGGCGC
AACTGGGCCAATTTTTGAGCGCCGGCGCTAAAAAATGGCCTTGGGAGGGGGGGGGGGGTTGGGGGCGCGGCTGAAGATGC
TCTTATATCATTGTTCTCAATACTATAAAAAATGACTTAAGATTTACGTACCACTGAATAAAAAGTAGTTGAGCTTTCCT
CAACATGAAAAAGAGAGTAAACCGAGGTAGTGTGAGTTTGTGACCAGGAAACTTAACCACTGGTGCTTCAGGATAAGCTC
CACGTTGGTGTGGCCCTGAATTTGCATTTCTCCTATCCTAATCCTATTGTCAAGAATGGTAATCATGTTGCTGCTCTCTT
GCGCTCTCTGACCCTTGCTTGTTCCTAGCCGGACTGAGATGAGACATTCAATCCCCTACTACCATATACTGTCATGCCAG
CTTTGCACTTACTTAGTGTTGGGGATAAGCTTTCCGCGATGCACAATATCCATACAGTATTTTGGATCGGCTTACTTGAT
CCGCACTGCACATTTTTGTGCATCTGCACGCCAGACTAGACAAATCTATTCCGGAGTGCGTAT---ACTACTCGTACTAC
TTTTTCTTTGT---------G---TAGTAATGTAATCCACGCACGCATTATTGACTGGGAACTGAAGGATATGGACATTG
TCAAAATGCTTGGTGTGTGGGAGGCAGTTGAGATGCCTTGATCTTTAT------GTGATAATTATCCTTGACTTGTGGGA
GGAAGGTGGTACCAAAAATGTGTAAAGATGGAGATAATGCATGGGTTTGCTGAGTTTGCA-TGCATCATTGTGAGCCAGA
TGAC-------GTGTGTGTCGCGATTACAGAGGGGATTAGGCTAGACAT-GCATGTTTTCCAGCTGTTTGATTCCTTGGC
CTATCCATGAGGGAGAGCTTGAACTGTTCCTGTTGGTTACCAACCACCGGTGCTAGTGATTGTTGGTTGGATGAGCATGC
ATTGTGGTATATA---------TATTTGGCGTTAGGTTAG---------------TGACTGCGTAAAACA-----CATTT
TCTTGTGTTGATGTAATGGAGCA--------------------GCTGTGATCCTGGATTT----GATTAATCCGGTCTGT
CTGTTGTGGAGGAGCTGGTGGAGGAG
>chr3D_1128
TCGACG--------------------------------------------------------------------------
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----------------------------------------------------------------GCCTGCCGGACTCGCT
CGTGCTGCTCATCCTCAACAAGCTGGAGGACGTGCACTCGCTGGGCCGCTGCGCCGCCGTGTCCAGGCGCTTCAACGACC
TGGTCCCGCTCGTCCACGACGTGTACGTCAAGATCGACCGCGTGGTGGCCGTGGACGGCGACCCCGACGACGCGCTCAAC
CTGTCGTCCCCCAAGCCC---CGCCACATCTTCTCCCACCTCTTCAAGCTCATGCTCTTCACCATCGCCAAGCCGTTCCA
AGGCATGCGC-------GGCCCGGGCGGCGCGGGCGGCCGGCCGCTGTTCCCGCGGCTCGCCCAGCACTCGCCCGTGCAG
GTGCTCAGGGGCTTCTCCCACGTCCGCAACCTCCGGGTGGAGCTCCCCTCGGGGGACGTCGGGACGGAGGAGGGGGTTCT
GCTCAAGTGGCGGGCCAGGTACGGCAGCACGCTCCAGAGCTGCGTCATCCTGGGCGGCACCCTGGTCGACCGCAA-----
-------------------------------GCCCGCCGGCGGGCACGAGCCG------------TCGGCGGCGGAGGAC
GGC---GGGAGCATGCCGGAGTCCTTCTACACCAACGGCGGGCTGAAGCTGCGCGTGGTGTGGACCATCAGCTCCCTGAT
CGCCGCGTCGACGCGGCACTACCTGCTCCGGTCTATCATCAAGGAGCATCCGACGCTGCGAAGCCTGGTGCTGGCGGACG
CCGACGGGCAGGGGACGCTGTGCATGGGGGCGGAGCAGCTCGCGGAGTTCAGGGAGAGCCGGCT---GTCGGCCTCGGCG
TGCTCCAACAGGACGCAGGTCCCGGCGTGCAGCATGAAGCTCAAGTACGCCCCCTACCTCGAGCTGCCCGGCGGCCTGGG
GCTGCAGGGCGCGACCCTGGTCGTCATCAAGCCCTCCGGCGACGGGGCTGGCGGGTGTCACGTTGGCCGGAAGGAGACCG
AAGCCTTTGTCTCGGGTGCGTTCGATGGGCCGTTCAGGTTCGCGGCCAAGGCGCTGATGAAGCGGCGCACCTATCTGCTG
GAGATGAACGGGTTCTA---------------------------------------------------------------
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>SNPs
SS-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
-------S---------------SS--------S-------S-------SSSSSSSSS----------------------
--------------SS-----S-----SS----------------SS---S------S---SSSSSS-------------
-----------------------------S----------------------------------------S---SSS---
---------------------------------------------------------------S-S----SSSSS-SSSS
S------S------S-------S-----------------S-SS--SSSSSSSSSSS-SS-SSSSSS--SSSSSSSSSSS
S-SSS-SSSSS-SSS---SSSSSSSSSSSSS-S-SSS-------------------------------------------
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--S-------------SS----S--SSSS-S-SSS-SS-S--SS-SS--S-SSS-SSS----------------------
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--------------------------SS-------S--SSSSSS---S-SS--S-SSSS----SSSSSSSSSSSSSSSS-
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----------------SS-------S--SS-S-S-----SSS--S-SS-S------------------------------
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---------------S-----------S-----S-SSSSSSSSSS-----------------------------------
-----------SSSSSSSS-------S-----------------------------------------------------
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---------------SS-S-----S--S----------SS-SSSSSSSSSS--S-S--S---------------------
----------S--------------------SS-----------------------------------------------
--------------------------------S-----------S-----------------------------------
S-------------------------------------------------------------------------------
---------------------------------------------------------S--------------------S-
------------------------------------S-------------------------------------------
---S----------------------------------------------------------------------------
-----------------------------------------------S--------------------------------
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------------------SSSSSSSSSSSSS-------------------------------------------------
-----------------S--------------------------------------------------------------
---S----------------------------------------------------------------------------
----------------------------------------------------------------SSS-------------
--------------------------------------------S-----------------------S-----------
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-----------S------------------------S---SSS------------------S-S----------------
----------------------------------------------S-------------------S----SSSS-----
-----------------------SSSSSS---------------------------------------------------
---------------S-S--S---------------------------------------------------S----S-S
--------------------------------------------S-----SS-S-SS-SS-SS--SS-SS---------S
-------S----------------S------------------S--------SS--------------------------
-----------------S--------------------------------S-----------S-----------------
-----------------------------------------------------------------------------S--
---------------------------------------S------S---------------------------------
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----------------SSSS------------S------------------SSSS-------------------------
----------------S---------------------------------------------------------------
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---------------------------------------------------------------SSS--------------
-----------------S-------------------------------------SS----S--S-S-------------
------------S--------------S--------------------SSSSSS--------S-----------------
---S-SS--S-------S-------S-------------SSSS-S-----------------SS----------------
--S--------------------------------S-------------S-----------------------------S
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---S-----SSSSSSSSSSSSS-S----------------------------------------------SSSSS-----
------------------S-SSS-SSS---SSSSSSSS----------------------SSSS--------S-------
--------------------------
>forward_4108
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--------CACCACCACCCTCTTCATCC----------------------------------------------------
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>reverse_7373
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------------CTGTGTGGGAGGCAGATGAG------------------------------------------------
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--------------------------
