Multiple sequence alignment - TraesCS4A01G124900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G124900 chr4A 100.000 3454 0 0 1 3454 159296503 159293050 0.000000e+00 6379
1 TraesCS4A01G124900 chr4A 85.560 277 31 1 371 638 173721616 173721892 7.300000e-72 281
2 TraesCS4A01G124900 chr4B 91.830 2546 93 41 632 3124 393405235 393407718 0.000000e+00 3443
3 TraesCS4A01G124900 chr4B 90.881 318 5 4 79 380 393404930 393405239 4.150000e-109 405
4 TraesCS4A01G124900 chr4B 97.030 101 3 0 3354 3454 393407716 393407816 1.650000e-38 171
5 TraesCS4A01G124900 chr4B 93.684 95 4 2 1 93 393403419 393403513 1.290000e-29 141
6 TraesCS4A01G124900 chr4D 91.264 2255 71 50 632 2810 315596271 315598475 0.000000e+00 2957
7 TraesCS4A01G124900 chr4D 92.378 328 6 12 2804 3124 315599468 315599783 1.890000e-122 449
8 TraesCS4A01G124900 chr4D 88.925 307 8 8 74 380 315595995 315596275 4.240000e-94 355
9 TraesCS4A01G124900 chr4D 85.556 270 30 7 376 636 498564835 498565104 1.220000e-69 274
10 TraesCS4A01G124900 chr4D 85.556 270 30 7 376 636 498569230 498569499 1.220000e-69 274
11 TraesCS4A01G124900 chr4D 98.020 101 2 0 3354 3454 315599781 315599881 3.540000e-40 176
12 TraesCS4A01G124900 chr3A 88.235 323 37 1 1651 1973 660196052 660196373 5.410000e-103 385
13 TraesCS4A01G124900 chr3A 90.000 240 19 4 3121 3358 13738298 13738534 4.330000e-79 305
14 TraesCS4A01G124900 chr2B 88.498 313 36 0 1651 1963 75847560 75847872 2.520000e-101 379
15 TraesCS4A01G124900 chr2A 88.562 306 35 0 1654 1959 51008492 51008187 4.210000e-99 372
16 TraesCS4A01G124900 chr2A 89.879 247 17 3 3117 3355 430932540 430932786 9.310000e-81 311
17 TraesCS4A01G124900 chr2A 86.792 265 24 10 380 634 676458102 676458365 5.640000e-73 285
18 TraesCS4A01G124900 chr2A 84.926 272 29 10 376 636 21820426 21820156 7.350000e-67 265
19 TraesCS4A01G124900 chr2A 85.075 268 31 7 378 636 709821106 709821373 7.350000e-67 265
20 TraesCS4A01G124900 chr2D 88.312 308 36 0 1651 1958 48133243 48133550 1.510000e-98 370
21 TraesCS4A01G124900 chr3D 87.342 316 40 0 1654 1969 525917682 525917367 2.530000e-96 363
22 TraesCS4A01G124900 chr3B 85.890 326 43 3 1635 1959 694263555 694263878 9.180000e-91 344
23 TraesCS4A01G124900 chr1D 85.714 308 44 0 1650 1957 60317505 60317812 3.320000e-85 326
24 TraesCS4A01G124900 chr1D 85.036 274 32 1 374 638 111086442 111086715 1.580000e-68 270
25 TraesCS4A01G124900 chr6B 90.726 248 15 3 3116 3355 716477387 716477634 1.200000e-84 324
26 TraesCS4A01G124900 chr7A 90.417 240 17 2 3122 3355 534783844 534784083 9.310000e-81 311
27 TraesCS4A01G124900 chr7A 90.164 244 15 4 3120 3355 174912335 174912577 3.350000e-80 309
28 TraesCS4A01G124900 chr7A 89.712 243 18 2 3120 3355 604102759 604102517 1.560000e-78 303
29 TraesCS4A01G124900 chr7A 85.606 264 33 4 378 636 519996841 519997104 4.390000e-69 272
30 TraesCS4A01G124900 chr6A 90.123 243 13 5 3122 3354 611418787 611418546 4.330000e-79 305
31 TraesCS4A01G124900 chr5A 89.431 246 17 6 3121 3358 704971440 704971684 5.600000e-78 302
32 TraesCS4A01G124900 chr5A 86.381 257 33 1 380 634 533482153 533481897 2.620000e-71 279
33 TraesCS4A01G124900 chr1A 88.845 251 17 7 3117 3357 497587953 497588202 7.250000e-77 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G124900 chr4A 159293050 159296503 3453 True 6379.00 6379 100.00000 1 3454 1 chr4A.!!$R1 3453
1 TraesCS4A01G124900 chr4B 393403419 393407816 4397 False 1040.00 3443 93.35625 1 3454 4 chr4B.!!$F1 3453
2 TraesCS4A01G124900 chr4D 315595995 315599881 3886 False 984.25 2957 92.64675 74 3454 4 chr4D.!!$F3 3380

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 1554 0.179189 GGCTGGCAAAAACGAGATCG 60.179 55.0 0.0 0.0 46.33 3.69 F
1164 2666 0.605589 CCCGATCAGCAGGTAGGATC 59.394 60.0 0.0 0.0 35.28 3.36 F
1395 2912 0.107703 TGCCTGATTTGTCTAGCCGG 60.108 55.0 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1304 2821 0.178961 AGGTTTGTTGCTTCCCCCTC 60.179 55.0 0.0 0.0 0.00 4.30 R
2399 3951 0.180642 CCATGCTCCAGATGCTGTCT 59.819 55.0 0.0 0.0 37.80 3.41 R
3189 5761 0.029300 CACCGCAGTTGGTCTTGTTG 59.971 55.0 0.0 0.0 41.38 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.277345 CGAACAGGCAATAGTATTTACCTGC 60.277 44.000 27.30 17.61 41.88 4.85
120 1554 0.179189 GGCTGGCAAAAACGAGATCG 60.179 55.000 0.00 0.00 46.33 3.69
242 1692 3.064545 GCTAGTAGCAGCACTTGAAATGG 59.935 47.826 17.47 0.00 41.89 3.16
317 1767 3.328237 CGCGAGCCGGTTTAATTAATT 57.672 42.857 0.00 5.89 0.00 1.40
359 1809 1.223187 CGGTAAATATCCCACCACGC 58.777 55.000 0.00 0.00 32.32 5.34
360 1810 1.202604 CGGTAAATATCCCACCACGCT 60.203 52.381 0.00 0.00 32.32 5.07
361 1811 2.743838 CGGTAAATATCCCACCACGCTT 60.744 50.000 0.00 0.00 32.32 4.68
362 1812 2.876550 GGTAAATATCCCACCACGCTTC 59.123 50.000 0.00 0.00 32.32 3.86
375 1825 1.072159 CGCTTCCCCTCATCCATCC 59.928 63.158 0.00 0.00 0.00 3.51
376 1826 1.458045 GCTTCCCCTCATCCATCCC 59.542 63.158 0.00 0.00 0.00 3.85
377 1827 1.064824 GCTTCCCCTCATCCATCCCT 61.065 60.000 0.00 0.00 0.00 4.20
378 1828 1.766499 GCTTCCCCTCATCCATCCCTA 60.766 57.143 0.00 0.00 0.00 3.53
379 1829 2.706350 CTTCCCCTCATCCATCCCTAA 58.294 52.381 0.00 0.00 0.00 2.69
380 1830 2.422939 TCCCCTCATCCATCCCTAAG 57.577 55.000 0.00 0.00 0.00 2.18
381 1831 1.873049 TCCCCTCATCCATCCCTAAGA 59.127 52.381 0.00 0.00 0.00 2.10
382 1832 1.981495 CCCCTCATCCATCCCTAAGAC 59.019 57.143 0.00 0.00 0.00 3.01
383 1833 2.428484 CCCCTCATCCATCCCTAAGACT 60.428 54.545 0.00 0.00 0.00 3.24
384 1834 2.636893 CCCTCATCCATCCCTAAGACTG 59.363 54.545 0.00 0.00 0.00 3.51
385 1835 2.636893 CCTCATCCATCCCTAAGACTGG 59.363 54.545 0.00 0.00 0.00 4.00
386 1836 3.312890 CTCATCCATCCCTAAGACTGGT 58.687 50.000 0.00 0.00 0.00 4.00
387 1837 3.309296 TCATCCATCCCTAAGACTGGTC 58.691 50.000 0.00 0.00 0.00 4.02
388 1838 2.940514 TCCATCCCTAAGACTGGTCA 57.059 50.000 3.51 0.00 0.00 4.02
389 1839 3.421394 TCCATCCCTAAGACTGGTCAT 57.579 47.619 3.51 0.00 0.00 3.06
390 1840 4.552883 TCCATCCCTAAGACTGGTCATA 57.447 45.455 3.51 0.00 0.00 2.15
391 1841 4.483950 TCCATCCCTAAGACTGGTCATAG 58.516 47.826 3.51 4.99 32.42 2.23
392 1842 4.078571 TCCATCCCTAAGACTGGTCATAGT 60.079 45.833 10.66 0.00 31.12 2.12
393 1843 4.039730 CCATCCCTAAGACTGGTCATAGTG 59.960 50.000 10.66 2.03 31.12 2.74
394 1844 4.603094 TCCCTAAGACTGGTCATAGTGA 57.397 45.455 10.66 3.99 31.12 3.41
395 1845 4.537751 TCCCTAAGACTGGTCATAGTGAG 58.462 47.826 10.66 2.33 31.12 3.51
396 1846 3.639094 CCCTAAGACTGGTCATAGTGAGG 59.361 52.174 10.66 3.57 31.12 3.86
397 1847 4.537751 CCTAAGACTGGTCATAGTGAGGA 58.462 47.826 10.66 0.00 31.12 3.71
398 1848 4.582656 CCTAAGACTGGTCATAGTGAGGAG 59.417 50.000 10.66 0.00 31.12 3.69
399 1849 3.748645 AGACTGGTCATAGTGAGGAGT 57.251 47.619 3.51 0.00 0.00 3.85
400 1850 4.864483 AGACTGGTCATAGTGAGGAGTA 57.136 45.455 3.51 0.00 0.00 2.59
401 1851 5.194473 AGACTGGTCATAGTGAGGAGTAA 57.806 43.478 3.51 0.00 0.00 2.24
402 1852 4.951094 AGACTGGTCATAGTGAGGAGTAAC 59.049 45.833 3.51 0.00 0.00 2.50
403 1853 4.936802 ACTGGTCATAGTGAGGAGTAACT 58.063 43.478 0.00 0.00 0.00 2.24
404 1854 5.334421 ACTGGTCATAGTGAGGAGTAACTT 58.666 41.667 0.00 0.00 0.00 2.66
405 1855 6.491383 ACTGGTCATAGTGAGGAGTAACTTA 58.509 40.000 0.00 0.00 0.00 2.24
406 1856 6.603997 ACTGGTCATAGTGAGGAGTAACTTAG 59.396 42.308 0.00 0.00 0.00 2.18
407 1857 6.728411 TGGTCATAGTGAGGAGTAACTTAGA 58.272 40.000 0.00 0.00 0.00 2.10
408 1858 6.602406 TGGTCATAGTGAGGAGTAACTTAGAC 59.398 42.308 0.00 0.00 32.58 2.59
409 1859 6.829811 GGTCATAGTGAGGAGTAACTTAGACT 59.170 42.308 0.00 0.00 33.27 3.24
410 1860 7.992033 GGTCATAGTGAGGAGTAACTTAGACTA 59.008 40.741 0.00 0.00 33.27 2.59
411 1861 9.048446 GTCATAGTGAGGAGTAACTTAGACTAG 57.952 40.741 0.00 0.00 31.58 2.57
412 1862 8.770322 TCATAGTGAGGAGTAACTTAGACTAGT 58.230 37.037 0.00 0.00 0.00 2.57
416 1866 8.770322 AGTGAGGAGTAACTTAGACTAGTATCA 58.230 37.037 0.00 0.00 0.00 2.15
417 1867 9.563748 GTGAGGAGTAACTTAGACTAGTATCAT 57.436 37.037 0.00 0.00 0.00 2.45
469 1919 8.785329 TGCAAAGTAACATGATAATAGTGTCA 57.215 30.769 0.00 0.00 0.00 3.58
470 1920 9.394767 TGCAAAGTAACATGATAATAGTGTCAT 57.605 29.630 0.00 0.00 36.11 3.06
519 1969 7.679659 AGACTTATTTTGTCTTGAAAAACGC 57.320 32.000 0.00 0.00 41.45 4.84
520 1970 7.480810 AGACTTATTTTGTCTTGAAAAACGCT 58.519 30.769 0.00 0.00 41.45 5.07
521 1971 8.617809 AGACTTATTTTGTCTTGAAAAACGCTA 58.382 29.630 0.00 0.00 41.45 4.26
522 1972 8.556517 ACTTATTTTGTCTTGAAAAACGCTAC 57.443 30.769 0.00 0.00 29.78 3.58
523 1973 7.375017 ACTTATTTTGTCTTGAAAAACGCTACG 59.625 33.333 0.00 0.00 29.78 3.51
524 1974 4.603231 TTTGTCTTGAAAAACGCTACGT 57.397 36.364 0.00 0.00 43.97 3.57
542 1992 9.467258 ACGCTACGTTACATTAACATATTATGT 57.533 29.630 3.40 3.40 40.81 2.29
565 2015 8.330466 TGTTACCACCTCACATTAAATACTTG 57.670 34.615 0.00 0.00 0.00 3.16
566 2016 5.897377 ACCACCTCACATTAAATACTTGC 57.103 39.130 0.00 0.00 0.00 4.01
567 2017 4.705023 ACCACCTCACATTAAATACTTGCC 59.295 41.667 0.00 0.00 0.00 4.52
568 2018 4.704540 CCACCTCACATTAAATACTTGCCA 59.295 41.667 0.00 0.00 0.00 4.92
569 2019 5.393027 CCACCTCACATTAAATACTTGCCAC 60.393 44.000 0.00 0.00 0.00 5.01
570 2020 5.182950 CACCTCACATTAAATACTTGCCACA 59.817 40.000 0.00 0.00 0.00 4.17
571 2021 5.951747 ACCTCACATTAAATACTTGCCACAT 59.048 36.000 0.00 0.00 0.00 3.21
572 2022 7.066887 CACCTCACATTAAATACTTGCCACATA 59.933 37.037 0.00 0.00 0.00 2.29
573 2023 7.613801 ACCTCACATTAAATACTTGCCACATAA 59.386 33.333 0.00 0.00 0.00 1.90
574 2024 8.131100 CCTCACATTAAATACTTGCCACATAAG 58.869 37.037 0.00 0.00 0.00 1.73
575 2025 7.479980 TCACATTAAATACTTGCCACATAAGC 58.520 34.615 0.00 0.00 0.00 3.09
576 2026 7.121907 TCACATTAAATACTTGCCACATAAGCA 59.878 33.333 0.00 0.00 38.81 3.91
588 2038 7.887996 TGCCACATAAGCAAAAATTTCTTAG 57.112 32.000 0.00 0.00 37.28 2.18
589 2039 7.665690 TGCCACATAAGCAAAAATTTCTTAGA 58.334 30.769 0.00 0.00 37.28 2.10
590 2040 7.814107 TGCCACATAAGCAAAAATTTCTTAGAG 59.186 33.333 0.00 0.00 37.28 2.43
591 2041 7.814587 GCCACATAAGCAAAAATTTCTTAGAGT 59.185 33.333 0.00 0.00 0.00 3.24
592 2042 9.132521 CCACATAAGCAAAAATTTCTTAGAGTG 57.867 33.333 16.61 16.61 35.00 3.51
593 2043 9.683069 CACATAAGCAAAAATTTCTTAGAGTGT 57.317 29.630 15.99 9.19 33.03 3.55
594 2044 9.683069 ACATAAGCAAAAATTTCTTAGAGTGTG 57.317 29.630 0.00 0.00 0.00 3.82
595 2045 8.642020 CATAAGCAAAAATTTCTTAGAGTGTGC 58.358 33.333 0.00 0.00 0.00 4.57
596 2046 6.396829 AGCAAAAATTTCTTAGAGTGTGCT 57.603 33.333 0.00 0.00 33.95 4.40
597 2047 7.510549 AGCAAAAATTTCTTAGAGTGTGCTA 57.489 32.000 0.00 0.00 36.88 3.49
598 2048 8.115490 AGCAAAAATTTCTTAGAGTGTGCTAT 57.885 30.769 0.00 0.00 36.88 2.97
599 2049 8.025445 AGCAAAAATTTCTTAGAGTGTGCTATG 58.975 33.333 0.00 0.00 36.88 2.23
600 2050 7.809806 GCAAAAATTTCTTAGAGTGTGCTATGT 59.190 33.333 0.00 0.00 0.00 2.29
601 2051 9.683069 CAAAAATTTCTTAGAGTGTGCTATGTT 57.317 29.630 0.00 0.00 0.00 2.71
604 2054 9.726438 AAATTTCTTAGAGTGTGCTATGTTACT 57.274 29.630 0.00 0.00 0.00 2.24
607 2057 7.028926 TCTTAGAGTGTGCTATGTTACTAGC 57.971 40.000 6.81 6.81 43.61 3.42
608 2058 6.829298 TCTTAGAGTGTGCTATGTTACTAGCT 59.171 38.462 12.43 0.00 43.68 3.32
609 2059 7.991460 TCTTAGAGTGTGCTATGTTACTAGCTA 59.009 37.037 12.43 0.00 43.68 3.32
610 2060 8.515695 TTAGAGTGTGCTATGTTACTAGCTAA 57.484 34.615 12.43 0.00 43.68 3.09
611 2061 7.033530 AGAGTGTGCTATGTTACTAGCTAAG 57.966 40.000 12.43 0.00 43.68 2.18
612 2062 6.603997 AGAGTGTGCTATGTTACTAGCTAAGT 59.396 38.462 12.43 0.00 43.68 2.24
613 2063 7.122948 AGAGTGTGCTATGTTACTAGCTAAGTT 59.877 37.037 12.43 0.00 43.68 2.66
614 2064 8.289939 AGTGTGCTATGTTACTAGCTAAGTTA 57.710 34.615 12.43 0.00 43.68 2.24
615 2065 8.189460 AGTGTGCTATGTTACTAGCTAAGTTAC 58.811 37.037 12.43 0.79 43.68 2.50
616 2066 8.189460 GTGTGCTATGTTACTAGCTAAGTTACT 58.811 37.037 12.43 0.00 43.68 2.24
617 2067 8.404000 TGTGCTATGTTACTAGCTAAGTTACTC 58.596 37.037 12.43 0.00 43.68 2.59
618 2068 7.861872 GTGCTATGTTACTAGCTAAGTTACTCC 59.138 40.741 12.43 0.00 43.68 3.85
619 2069 7.014038 TGCTATGTTACTAGCTAAGTTACTCCC 59.986 40.741 12.43 0.00 43.68 4.30
620 2070 7.014038 GCTATGTTACTAGCTAAGTTACTCCCA 59.986 40.741 0.00 0.00 40.79 4.37
621 2071 6.521151 TGTTACTAGCTAAGTTACTCCCAC 57.479 41.667 0.00 0.00 38.33 4.61
622 2072 6.251471 TGTTACTAGCTAAGTTACTCCCACT 58.749 40.000 0.00 0.00 38.33 4.00
623 2073 7.405292 TGTTACTAGCTAAGTTACTCCCACTA 58.595 38.462 0.00 0.00 38.33 2.74
624 2074 8.057623 TGTTACTAGCTAAGTTACTCCCACTAT 58.942 37.037 0.00 0.00 38.33 2.12
625 2075 6.963083 ACTAGCTAAGTTACTCCCACTATG 57.037 41.667 0.00 0.00 33.35 2.23
626 2076 6.670617 ACTAGCTAAGTTACTCCCACTATGA 58.329 40.000 0.00 0.00 33.35 2.15
627 2077 5.855740 AGCTAAGTTACTCCCACTATGAC 57.144 43.478 0.00 0.00 0.00 3.06
628 2078 5.520751 AGCTAAGTTACTCCCACTATGACT 58.479 41.667 0.00 0.00 0.00 3.41
629 2079 6.670617 AGCTAAGTTACTCCCACTATGACTA 58.329 40.000 0.00 0.00 0.00 2.59
630 2080 6.773685 AGCTAAGTTACTCCCACTATGACTAG 59.226 42.308 0.00 0.00 0.00 2.57
652 2102 8.989980 ACTAGCCTAATAAAGCACGATTAATTC 58.010 33.333 0.00 0.00 0.00 2.17
817 2283 1.987807 CTCCCGCCCAATCCATCACT 61.988 60.000 0.00 0.00 0.00 3.41
840 2306 0.745468 ACCCCGCGAATACTCTTCTC 59.255 55.000 8.23 0.00 0.00 2.87
841 2307 1.033574 CCCCGCGAATACTCTTCTCT 58.966 55.000 8.23 0.00 0.00 3.10
842 2308 1.409427 CCCCGCGAATACTCTTCTCTT 59.591 52.381 8.23 0.00 0.00 2.85
843 2309 2.544069 CCCCGCGAATACTCTTCTCTTC 60.544 54.545 8.23 0.00 0.00 2.87
844 2310 2.544069 CCCGCGAATACTCTTCTCTTCC 60.544 54.545 8.23 0.00 0.00 3.46
864 2330 5.269554 TCCCTTCTCTTCTCTTCTCTTCT 57.730 43.478 0.00 0.00 0.00 2.85
875 2341 0.610174 TTCTCTTCTCCGCACAGCAT 59.390 50.000 0.00 0.00 0.00 3.79
937 2435 1.515304 GAGTTGTCTCGCTCGCCTC 60.515 63.158 0.00 0.00 0.00 4.70
956 2454 1.091771 CATCAATCCTTGGCGTCGCT 61.092 55.000 18.11 0.00 0.00 4.93
995 2497 3.359523 GGCGGACGGTTTGAACCC 61.360 66.667 7.30 0.00 46.53 4.11
996 2498 3.719144 GCGGACGGTTTGAACCCG 61.719 66.667 0.00 0.00 46.53 5.28
997 2499 2.029369 CGGACGGTTTGAACCCGA 59.971 61.111 8.51 0.00 46.53 5.14
998 2500 1.375013 CGGACGGTTTGAACCCGAT 60.375 57.895 8.51 0.00 46.53 4.18
1116 2618 1.516386 CGTCAACTACATCGCCGCT 60.516 57.895 0.00 0.00 0.00 5.52
1164 2666 0.605589 CCCGATCAGCAGGTAGGATC 59.394 60.000 0.00 0.00 35.28 3.36
1265 2775 3.820689 CATCATTTTGTTTCCGCGAGAA 58.179 40.909 8.23 6.83 0.00 2.87
1266 2776 3.536158 TCATTTTGTTTCCGCGAGAAG 57.464 42.857 8.23 0.00 35.40 2.85
1267 2777 2.875933 TCATTTTGTTTCCGCGAGAAGT 59.124 40.909 8.23 0.00 35.40 3.01
1268 2778 2.748461 TTTTGTTTCCGCGAGAAGTG 57.252 45.000 8.23 0.00 35.40 3.16
1393 2910 2.409948 ACTGCCTGATTTGTCTAGCC 57.590 50.000 0.00 0.00 0.00 3.93
1395 2912 0.107703 TGCCTGATTTGTCTAGCCGG 60.108 55.000 0.00 0.00 0.00 6.13
1396 2913 0.178068 GCCTGATTTGTCTAGCCGGA 59.822 55.000 5.05 0.00 0.00 5.14
1397 2914 1.406887 GCCTGATTTGTCTAGCCGGAA 60.407 52.381 5.05 0.00 0.00 4.30
1398 2915 2.555199 CCTGATTTGTCTAGCCGGAAG 58.445 52.381 5.05 0.62 0.00 3.46
1423 2951 7.337689 AGCTAGCTATAGTGAATGAGAGAGATG 59.662 40.741 17.69 0.00 0.00 2.90
1431 2959 3.206185 TGAATGAGAGAGATGGAGGGAGA 59.794 47.826 0.00 0.00 0.00 3.71
1531 3063 2.464865 GTCTCGTCACATACATGCTCC 58.535 52.381 0.00 0.00 0.00 4.70
1532 3064 1.065551 TCTCGTCACATACATGCTCCG 59.934 52.381 0.00 0.00 0.00 4.63
1533 3065 0.527600 TCGTCACATACATGCTCCGC 60.528 55.000 0.00 0.00 0.00 5.54
1534 3066 0.805711 CGTCACATACATGCTCCGCA 60.806 55.000 0.00 0.00 44.86 5.69
1585 3117 6.751425 TCAGCAAGTTGGCGAATTTATATTTG 59.249 34.615 4.75 0.00 39.27 2.32
1594 3126 8.439993 TGGCGAATTTATATTTGTTAGTAGCA 57.560 30.769 0.00 0.00 0.00 3.49
1596 3128 9.166126 GGCGAATTTATATTTGTTAGTAGCAAC 57.834 33.333 0.00 0.00 0.00 4.17
2057 3600 3.827898 CCGGAGCTCCCTGTCGAC 61.828 72.222 27.20 9.11 0.00 4.20
2399 3951 1.141019 GATGGGCAGCTTCGACGTA 59.859 57.895 0.00 0.00 0.00 3.57
2430 3982 0.037326 GAGCATGGACGACTTGTGGA 60.037 55.000 0.00 0.00 0.00 4.02
2462 4014 3.354397 GCAGTTCGTGTGAAAAGTCAAG 58.646 45.455 0.00 0.00 35.46 3.02
2481 4033 0.394352 GACGGTGGCATGGAAATCCT 60.394 55.000 0.44 0.00 36.82 3.24
2486 4038 0.627451 TGGCATGGAAATCCTCAGCT 59.373 50.000 0.44 0.00 36.82 4.24
2553 4111 1.834378 TAGCAGATCCAGCGGAGGG 60.834 63.158 3.76 0.00 34.05 4.30
2568 4126 2.429610 CGGAGGGAAACGGATTAGAAGA 59.570 50.000 0.00 0.00 0.00 2.87
2569 4127 3.118884 CGGAGGGAAACGGATTAGAAGAA 60.119 47.826 0.00 0.00 0.00 2.52
2570 4128 4.443621 GGAGGGAAACGGATTAGAAGAAG 58.556 47.826 0.00 0.00 0.00 2.85
2612 4170 4.700692 GGACTGGGAGGATTAAAACAAGAC 59.299 45.833 0.00 0.00 0.00 3.01
2663 4221 1.155042 CTGTTCTGCTCCAGTTCTGC 58.845 55.000 0.00 0.00 32.61 4.26
2672 4230 2.671177 CCAGTTCTGCGCCGTCTTG 61.671 63.158 4.18 0.00 0.00 3.02
2746 4307 4.981674 GTGTAGCAGAAGCAGATGATCTAC 59.018 45.833 0.00 0.00 45.49 2.59
2747 4308 4.892345 TGTAGCAGAAGCAGATGATCTACT 59.108 41.667 0.00 0.00 45.49 2.57
2748 4309 6.016693 GTGTAGCAGAAGCAGATGATCTACTA 60.017 42.308 0.00 0.00 45.49 1.82
2777 4338 0.661020 GTGCCGCCGTTAATTATGCT 59.339 50.000 0.00 0.00 0.00 3.79
2821 5382 8.524487 ACTCATTCTTTTCGAGTGATTACTACT 58.476 33.333 0.00 0.00 37.68 2.57
2823 5384 9.784680 TCATTCTTTTCGAGTGATTACTACTAC 57.215 33.333 0.00 0.00 37.25 2.73
2824 5385 9.569167 CATTCTTTTCGAGTGATTACTACTACA 57.431 33.333 0.00 0.00 37.25 2.74
2879 5443 8.723942 ATATGAAGTGAACTGTTGATAGGAAC 57.276 34.615 0.00 0.00 0.00 3.62
2884 5456 6.692486 AGTGAACTGTTGATAGGAACTGTAG 58.308 40.000 0.00 0.00 41.52 2.74
3016 5588 4.917887 CTTGAATTCCAAGTGACGAGAG 57.082 45.455 2.27 0.00 45.52 3.20
3018 5590 2.632996 TGAATTCCAAGTGACGAGAGGT 59.367 45.455 2.27 0.00 0.00 3.85
3121 5693 6.096141 TGTTTATGCCGACATGGATGTTTTAT 59.904 34.615 0.00 0.00 41.95 1.40
3122 5694 7.283354 TGTTTATGCCGACATGGATGTTTTATA 59.717 33.333 0.00 0.00 41.95 0.98
3123 5695 5.689383 ATGCCGACATGGATGTTTTATAC 57.311 39.130 0.00 0.00 41.95 1.47
3124 5696 4.776349 TGCCGACATGGATGTTTTATACT 58.224 39.130 0.00 0.00 41.95 2.12
3125 5697 4.814234 TGCCGACATGGATGTTTTATACTC 59.186 41.667 0.00 0.00 41.95 2.59
3126 5698 4.213482 GCCGACATGGATGTTTTATACTCC 59.787 45.833 0.00 0.00 41.95 3.85
3127 5699 4.755123 CCGACATGGATGTTTTATACTCCC 59.245 45.833 0.00 0.00 41.95 4.30
3128 5700 5.454755 CCGACATGGATGTTTTATACTCCCT 60.455 44.000 0.00 0.00 41.95 4.20
3129 5701 5.696724 CGACATGGATGTTTTATACTCCCTC 59.303 44.000 0.00 0.00 41.95 4.30
3130 5702 5.941788 ACATGGATGTTTTATACTCCCTCC 58.058 41.667 0.00 0.00 37.90 4.30
3131 5703 5.431731 ACATGGATGTTTTATACTCCCTCCA 59.568 40.000 0.00 0.00 37.90 3.86
3132 5704 6.103205 ACATGGATGTTTTATACTCCCTCCAT 59.897 38.462 0.00 0.00 41.68 3.41
3133 5705 6.590656 TGGATGTTTTATACTCCCTCCATT 57.409 37.500 0.00 0.00 0.00 3.16
3134 5706 6.980577 TGGATGTTTTATACTCCCTCCATTT 58.019 36.000 0.00 0.00 0.00 2.32
3135 5707 7.060421 TGGATGTTTTATACTCCCTCCATTTC 58.940 38.462 0.00 0.00 0.00 2.17
3136 5708 7.060421 GGATGTTTTATACTCCCTCCATTTCA 58.940 38.462 0.00 0.00 0.00 2.69
3137 5709 7.559897 GGATGTTTTATACTCCCTCCATTTCAA 59.440 37.037 0.00 0.00 0.00 2.69
3138 5710 8.893563 ATGTTTTATACTCCCTCCATTTCAAA 57.106 30.769 0.00 0.00 0.00 2.69
3139 5711 8.713708 TGTTTTATACTCCCTCCATTTCAAAA 57.286 30.769 0.00 0.00 0.00 2.44
3140 5712 9.320295 TGTTTTATACTCCCTCCATTTCAAAAT 57.680 29.630 0.00 0.00 0.00 1.82
3148 5720 7.931948 ACTCCCTCCATTTCAAAATATAGTACG 59.068 37.037 0.00 0.00 0.00 3.67
3149 5721 7.798071 TCCCTCCATTTCAAAATATAGTACGT 58.202 34.615 0.00 0.00 0.00 3.57
3150 5722 7.929785 TCCCTCCATTTCAAAATATAGTACGTC 59.070 37.037 0.00 0.00 0.00 4.34
3151 5723 7.931948 CCCTCCATTTCAAAATATAGTACGTCT 59.068 37.037 0.00 0.00 0.00 4.18
3152 5724 8.765219 CCTCCATTTCAAAATATAGTACGTCTG 58.235 37.037 0.00 0.00 0.00 3.51
3153 5725 8.138365 TCCATTTCAAAATATAGTACGTCTGC 57.862 34.615 0.00 0.00 0.00 4.26
3154 5726 7.042992 TCCATTTCAAAATATAGTACGTCTGCG 60.043 37.037 0.00 0.00 44.93 5.18
3165 5737 2.900528 CGTCTGCGTTTTCTGAGGT 58.099 52.632 0.00 0.00 0.00 3.85
3166 5738 0.784778 CGTCTGCGTTTTCTGAGGTC 59.215 55.000 0.00 0.00 0.00 3.85
3167 5739 1.149148 GTCTGCGTTTTCTGAGGTCC 58.851 55.000 0.00 0.00 0.00 4.46
3168 5740 0.756294 TCTGCGTTTTCTGAGGTCCA 59.244 50.000 0.00 0.00 0.00 4.02
3169 5741 1.140052 TCTGCGTTTTCTGAGGTCCAA 59.860 47.619 0.00 0.00 0.00 3.53
3170 5742 1.264288 CTGCGTTTTCTGAGGTCCAAC 59.736 52.381 0.00 0.00 0.00 3.77
3171 5743 1.134220 TGCGTTTTCTGAGGTCCAACT 60.134 47.619 0.00 0.00 0.00 3.16
3172 5744 1.947456 GCGTTTTCTGAGGTCCAACTT 59.053 47.619 0.00 0.00 0.00 2.66
3173 5745 2.357952 GCGTTTTCTGAGGTCCAACTTT 59.642 45.455 0.00 0.00 0.00 2.66
3174 5746 3.792124 GCGTTTTCTGAGGTCCAACTTTG 60.792 47.826 0.00 0.00 0.00 2.77
3175 5747 3.625764 CGTTTTCTGAGGTCCAACTTTGA 59.374 43.478 0.00 0.00 0.00 2.69
3176 5748 4.495844 CGTTTTCTGAGGTCCAACTTTGAC 60.496 45.833 0.00 0.00 0.00 3.18
3177 5749 2.930826 TCTGAGGTCCAACTTTGACC 57.069 50.000 4.16 4.16 39.18 4.02
3178 5750 2.123589 TCTGAGGTCCAACTTTGACCA 58.876 47.619 13.24 0.00 41.22 4.02
3179 5751 2.711009 TCTGAGGTCCAACTTTGACCAT 59.289 45.455 13.24 0.72 41.22 3.55
3180 5752 3.907474 TCTGAGGTCCAACTTTGACCATA 59.093 43.478 13.24 2.61 41.22 2.74
3181 5753 4.349636 TCTGAGGTCCAACTTTGACCATAA 59.650 41.667 13.24 0.00 41.22 1.90
3182 5754 5.055265 TGAGGTCCAACTTTGACCATAAA 57.945 39.130 13.24 0.00 41.22 1.40
3183 5755 5.640147 TGAGGTCCAACTTTGACCATAAAT 58.360 37.500 13.24 0.00 41.22 1.40
3184 5756 6.074648 TGAGGTCCAACTTTGACCATAAATT 58.925 36.000 13.24 0.00 41.22 1.82
3185 5757 6.553100 TGAGGTCCAACTTTGACCATAAATTT 59.447 34.615 13.24 0.00 41.22 1.82
3186 5758 7.726291 TGAGGTCCAACTTTGACCATAAATTTA 59.274 33.333 13.24 0.00 41.22 1.40
3187 5759 8.485578 AGGTCCAACTTTGACCATAAATTTAA 57.514 30.769 13.24 0.00 41.22 1.52
3188 5760 8.364894 AGGTCCAACTTTGACCATAAATTTAAC 58.635 33.333 13.24 0.00 41.22 2.01
3189 5761 7.601130 GGTCCAACTTTGACCATAAATTTAACC 59.399 37.037 1.21 0.00 38.76 2.85
3190 5762 8.145122 GTCCAACTTTGACCATAAATTTAACCA 58.855 33.333 1.21 0.00 0.00 3.67
3191 5763 8.705594 TCCAACTTTGACCATAAATTTAACCAA 58.294 29.630 1.21 2.19 0.00 3.67
3192 5764 8.769891 CCAACTTTGACCATAAATTTAACCAAC 58.230 33.333 1.21 0.00 0.00 3.77
3193 5765 9.319143 CAACTTTGACCATAAATTTAACCAACA 57.681 29.630 1.21 0.00 0.00 3.33
3194 5766 9.892130 AACTTTGACCATAAATTTAACCAACAA 57.108 25.926 1.21 3.68 0.00 2.83
3195 5767 9.541143 ACTTTGACCATAAATTTAACCAACAAG 57.459 29.630 1.21 4.46 0.00 3.16
3196 5768 9.757227 CTTTGACCATAAATTTAACCAACAAGA 57.243 29.630 1.21 0.00 0.00 3.02
3197 5769 9.535878 TTTGACCATAAATTTAACCAACAAGAC 57.464 29.630 1.21 0.00 0.00 3.01
3198 5770 7.662897 TGACCATAAATTTAACCAACAAGACC 58.337 34.615 1.21 0.00 0.00 3.85
3199 5771 7.287927 TGACCATAAATTTAACCAACAAGACCA 59.712 33.333 1.21 0.00 0.00 4.02
3200 5772 8.024145 ACCATAAATTTAACCAACAAGACCAA 57.976 30.769 1.21 0.00 0.00 3.67
3201 5773 7.929245 ACCATAAATTTAACCAACAAGACCAAC 59.071 33.333 1.21 0.00 0.00 3.77
3202 5774 8.147704 CCATAAATTTAACCAACAAGACCAACT 58.852 33.333 1.21 0.00 0.00 3.16
3203 5775 8.977505 CATAAATTTAACCAACAAGACCAACTG 58.022 33.333 1.21 0.00 0.00 3.16
3204 5776 4.379339 TTTAACCAACAAGACCAACTGC 57.621 40.909 0.00 0.00 0.00 4.40
3205 5777 0.738389 AACCAACAAGACCAACTGCG 59.262 50.000 0.00 0.00 0.00 5.18
3206 5778 1.101049 ACCAACAAGACCAACTGCGG 61.101 55.000 0.00 0.00 0.00 5.69
3207 5779 1.101049 CCAACAAGACCAACTGCGGT 61.101 55.000 0.00 0.00 43.91 5.68
3208 5780 0.029300 CAACAAGACCAACTGCGGTG 59.971 55.000 0.00 0.00 40.22 4.94
3209 5781 1.101049 AACAAGACCAACTGCGGTGG 61.101 55.000 10.52 10.52 40.22 4.61
3210 5782 2.113139 AAGACCAACTGCGGTGGG 59.887 61.111 18.33 18.33 40.22 4.61
3211 5783 2.448582 AAGACCAACTGCGGTGGGA 61.449 57.895 26.78 0.00 40.22 4.37
3212 5784 2.358737 GACCAACTGCGGTGGGAG 60.359 66.667 26.78 4.53 40.22 4.30
3213 5785 2.847234 ACCAACTGCGGTGGGAGA 60.847 61.111 26.78 0.00 38.85 3.71
3214 5786 2.391724 GACCAACTGCGGTGGGAGAA 62.392 60.000 26.78 0.00 40.22 2.87
3215 5787 1.228124 CCAACTGCGGTGGGAGAAA 60.228 57.895 14.70 0.00 38.85 2.52
3216 5788 0.821711 CCAACTGCGGTGGGAGAAAA 60.822 55.000 14.70 0.00 38.85 2.29
3217 5789 1.028905 CAACTGCGGTGGGAGAAAAA 58.971 50.000 0.00 0.00 35.29 1.94
3218 5790 1.613437 CAACTGCGGTGGGAGAAAAAT 59.387 47.619 0.00 0.00 35.29 1.82
3219 5791 1.995376 ACTGCGGTGGGAGAAAAATT 58.005 45.000 0.00 0.00 35.29 1.82
3220 5792 3.149005 ACTGCGGTGGGAGAAAAATTA 57.851 42.857 0.00 0.00 35.29 1.40
3221 5793 3.697166 ACTGCGGTGGGAGAAAAATTAT 58.303 40.909 0.00 0.00 35.29 1.28
3222 5794 4.850680 ACTGCGGTGGGAGAAAAATTATA 58.149 39.130 0.00 0.00 35.29 0.98
3223 5795 5.445964 ACTGCGGTGGGAGAAAAATTATAT 58.554 37.500 0.00 0.00 35.29 0.86
3224 5796 6.597562 ACTGCGGTGGGAGAAAAATTATATA 58.402 36.000 0.00 0.00 35.29 0.86
3225 5797 7.057894 ACTGCGGTGGGAGAAAAATTATATAA 58.942 34.615 0.00 0.00 35.29 0.98
3226 5798 7.724061 ACTGCGGTGGGAGAAAAATTATATAAT 59.276 33.333 0.00 1.91 35.29 1.28
3227 5799 8.472007 TGCGGTGGGAGAAAAATTATATAATT 57.528 30.769 13.85 13.85 37.49 1.40
3228 5800 8.356657 TGCGGTGGGAGAAAAATTATATAATTG 58.643 33.333 19.08 5.70 36.14 2.32
3229 5801 8.573035 GCGGTGGGAGAAAAATTATATAATTGA 58.427 33.333 19.08 0.00 36.14 2.57
3271 5843 9.722056 ACGAATTCACTGATATAATTTTTGCTC 57.278 29.630 6.22 0.00 0.00 4.26
3272 5844 9.173939 CGAATTCACTGATATAATTTTTGCTCC 57.826 33.333 6.22 0.00 0.00 4.70
3273 5845 9.468532 GAATTCACTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
3274 5846 6.618287 TCACTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
3275 5847 5.008613 TCACTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
3276 5848 4.278419 ACTGATATAATTTTTGCTCCCGCC 59.722 41.667 0.00 0.00 34.43 6.13
3277 5849 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
3278 5850 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
3279 5851 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
3280 5852 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
3281 5853 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
3282 5854 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
3299 5871 5.192496 CGCAATCGGTAGTTAAATTTACGG 58.808 41.667 0.00 0.00 0.00 4.02
3300 5872 5.220453 CGCAATCGGTAGTTAAATTTACGGT 60.220 40.000 0.00 0.00 0.00 4.83
3301 5873 6.187480 GCAATCGGTAGTTAAATTTACGGTC 58.813 40.000 0.00 0.00 0.00 4.79
3302 5874 6.183360 GCAATCGGTAGTTAAATTTACGGTCA 60.183 38.462 0.00 0.00 0.00 4.02
3303 5875 7.623925 GCAATCGGTAGTTAAATTTACGGTCAA 60.624 37.037 0.00 0.00 0.00 3.18
3304 5876 7.903995 ATCGGTAGTTAAATTTACGGTCAAA 57.096 32.000 0.00 0.00 0.00 2.69
3305 5877 7.903995 TCGGTAGTTAAATTTACGGTCAAAT 57.096 32.000 0.00 0.00 0.00 2.32
3306 5878 8.321650 TCGGTAGTTAAATTTACGGTCAAATT 57.678 30.769 0.00 0.00 39.26 1.82
3307 5879 8.782144 TCGGTAGTTAAATTTACGGTCAAATTT 58.218 29.630 16.44 16.44 45.45 1.82
3308 5880 8.842777 CGGTAGTTAAATTTACGGTCAAATTTG 58.157 33.333 12.15 12.15 44.08 2.32
3309 5881 9.896263 GGTAGTTAAATTTACGGTCAAATTTGA 57.104 29.630 16.91 16.91 44.08 2.69
3312 5884 8.974408 AGTTAAATTTACGGTCAAATTTGAAGC 58.026 29.630 22.07 14.20 44.08 3.86
3313 5885 8.756864 GTTAAATTTACGGTCAAATTTGAAGCA 58.243 29.630 22.07 7.93 44.08 3.91
3314 5886 6.763303 AATTTACGGTCAAATTTGAAGCAC 57.237 33.333 22.07 10.44 39.21 4.40
3315 5887 2.399396 ACGGTCAAATTTGAAGCACG 57.601 45.000 22.07 22.58 39.21 5.34
3316 5888 1.944024 ACGGTCAAATTTGAAGCACGA 59.056 42.857 27.51 6.22 39.21 4.35
3317 5889 2.032030 ACGGTCAAATTTGAAGCACGAG 60.032 45.455 27.51 15.75 39.21 4.18
3318 5890 2.223144 CGGTCAAATTTGAAGCACGAGA 59.777 45.455 22.07 0.00 39.21 4.04
3319 5891 3.303725 CGGTCAAATTTGAAGCACGAGAA 60.304 43.478 22.07 0.00 39.21 2.87
3320 5892 4.613622 CGGTCAAATTTGAAGCACGAGAAT 60.614 41.667 22.07 0.00 39.21 2.40
3321 5893 5.390461 CGGTCAAATTTGAAGCACGAGAATA 60.390 40.000 22.07 0.00 39.21 1.75
3322 5894 6.024049 GGTCAAATTTGAAGCACGAGAATAG 58.976 40.000 22.07 0.00 39.21 1.73
3323 5895 6.128282 GGTCAAATTTGAAGCACGAGAATAGA 60.128 38.462 22.07 0.00 39.21 1.98
3324 5896 6.958193 GTCAAATTTGAAGCACGAGAATAGAG 59.042 38.462 22.07 0.00 39.21 2.43
3325 5897 6.650807 TCAAATTTGAAGCACGAGAATAGAGT 59.349 34.615 18.45 0.00 33.55 3.24
3326 5898 7.817478 TCAAATTTGAAGCACGAGAATAGAGTA 59.183 33.333 18.45 0.00 33.55 2.59
3327 5899 8.443160 CAAATTTGAAGCACGAGAATAGAGTAA 58.557 33.333 13.08 0.00 0.00 2.24
3328 5900 7.763172 ATTTGAAGCACGAGAATAGAGTAAG 57.237 36.000 0.00 0.00 0.00 2.34
3329 5901 4.673441 TGAAGCACGAGAATAGAGTAAGC 58.327 43.478 0.00 0.00 0.00 3.09
3330 5902 4.157840 TGAAGCACGAGAATAGAGTAAGCA 59.842 41.667 0.00 0.00 0.00 3.91
3331 5903 4.035278 AGCACGAGAATAGAGTAAGCAC 57.965 45.455 0.00 0.00 0.00 4.40
3332 5904 3.697045 AGCACGAGAATAGAGTAAGCACT 59.303 43.478 0.00 0.00 37.87 4.40
3333 5905 4.882427 AGCACGAGAATAGAGTAAGCACTA 59.118 41.667 0.00 0.00 34.21 2.74
3334 5906 5.533154 AGCACGAGAATAGAGTAAGCACTAT 59.467 40.000 0.00 0.00 34.21 2.12
3335 5907 6.711194 AGCACGAGAATAGAGTAAGCACTATA 59.289 38.462 0.00 0.00 34.21 1.31
3336 5908 7.392113 AGCACGAGAATAGAGTAAGCACTATAT 59.608 37.037 0.00 0.00 40.18 0.86
3337 5909 8.024285 GCACGAGAATAGAGTAAGCACTATATT 58.976 37.037 4.29 4.29 46.73 1.28
3338 5910 9.335891 CACGAGAATAGAGTAAGCACTATATTG 57.664 37.037 8.36 0.00 45.03 1.90
3339 5911 9.069082 ACGAGAATAGAGTAAGCACTATATTGT 57.931 33.333 8.36 5.23 45.03 2.71
3340 5912 9.335891 CGAGAATAGAGTAAGCACTATATTGTG 57.664 37.037 12.29 12.29 45.03 3.33
3341 5913 9.632807 GAGAATAGAGTAAGCACTATATTGTGG 57.367 37.037 17.22 1.91 45.03 4.17
3342 5914 9.368416 AGAATAGAGTAAGCACTATATTGTGGA 57.632 33.333 17.22 0.00 45.03 4.02
3343 5915 9.982651 GAATAGAGTAAGCACTATATTGTGGAA 57.017 33.333 17.22 0.00 45.03 3.53
3345 5917 9.935241 ATAGAGTAAGCACTATATTGTGGAATG 57.065 33.333 17.22 0.00 36.05 2.67
3346 5918 8.023021 AGAGTAAGCACTATATTGTGGAATGA 57.977 34.615 17.22 0.00 38.31 2.57
3347 5919 8.486210 AGAGTAAGCACTATATTGTGGAATGAA 58.514 33.333 17.22 0.00 38.31 2.57
3348 5920 8.668510 AGTAAGCACTATATTGTGGAATGAAG 57.331 34.615 17.22 0.00 38.31 3.02
3349 5921 6.949352 AAGCACTATATTGTGGAATGAAGG 57.051 37.500 17.22 0.00 38.31 3.46
3350 5922 5.380043 AGCACTATATTGTGGAATGAAGGG 58.620 41.667 17.22 0.00 38.31 3.95
3351 5923 5.132648 AGCACTATATTGTGGAATGAAGGGA 59.867 40.000 17.22 0.00 38.31 4.20
3352 5924 5.471456 GCACTATATTGTGGAATGAAGGGAG 59.529 44.000 17.22 0.00 38.31 4.30
3379 5951 0.246635 AATTCAGTACGAGCGGTGCT 59.753 50.000 0.00 0.00 42.85 4.40
3449 6021 4.091509 GCATTACACTTGTTGTCCTCGTAG 59.908 45.833 0.00 0.00 39.91 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 48 4.597940 GGGAGGGAATACTACTGCCTATTT 59.402 45.833 0.00 0.00 39.36 1.40
48 51 3.255634 GGGAGGGAATACTACTGCCTA 57.744 52.381 0.00 0.00 39.36 3.93
242 1692 4.246458 AGTTTGACTAATTGACTCGCCTC 58.754 43.478 0.00 0.00 0.00 4.70
295 1745 1.754436 TAATTAAACCGGCTCGCGCG 61.754 55.000 26.76 26.76 36.88 6.86
314 1764 0.965439 TTGGCCACGCAGCTAAAATT 59.035 45.000 3.88 0.00 29.43 1.82
315 1765 1.185315 ATTGGCCACGCAGCTAAAAT 58.815 45.000 3.88 0.00 36.76 1.82
316 1766 0.965439 AATTGGCCACGCAGCTAAAA 59.035 45.000 3.88 0.00 36.76 1.52
317 1767 1.742831 CTAATTGGCCACGCAGCTAAA 59.257 47.619 3.88 0.00 36.76 1.85
359 1809 2.422939 TAGGGATGGATGAGGGGAAG 57.577 55.000 0.00 0.00 0.00 3.46
360 1810 2.252676 TCTTAGGGATGGATGAGGGGAA 59.747 50.000 0.00 0.00 0.00 3.97
361 1811 1.873049 TCTTAGGGATGGATGAGGGGA 59.127 52.381 0.00 0.00 0.00 4.81
362 1812 1.981495 GTCTTAGGGATGGATGAGGGG 59.019 57.143 0.00 0.00 0.00 4.79
375 1825 4.537751 TCCTCACTATGACCAGTCTTAGG 58.462 47.826 19.23 8.84 39.96 2.69
376 1826 5.197451 ACTCCTCACTATGACCAGTCTTAG 58.803 45.833 15.49 15.49 40.86 2.18
377 1827 5.194473 ACTCCTCACTATGACCAGTCTTA 57.806 43.478 0.00 0.00 0.00 2.10
378 1828 4.054359 ACTCCTCACTATGACCAGTCTT 57.946 45.455 0.00 0.00 0.00 3.01
379 1829 3.748645 ACTCCTCACTATGACCAGTCT 57.251 47.619 0.00 0.00 0.00 3.24
380 1830 4.951094 AGTTACTCCTCACTATGACCAGTC 59.049 45.833 0.00 0.00 0.00 3.51
381 1831 4.936802 AGTTACTCCTCACTATGACCAGT 58.063 43.478 0.00 0.00 0.00 4.00
382 1832 5.923733 AAGTTACTCCTCACTATGACCAG 57.076 43.478 0.00 0.00 0.00 4.00
383 1833 6.602406 GTCTAAGTTACTCCTCACTATGACCA 59.398 42.308 0.00 0.00 0.00 4.02
384 1834 6.829811 AGTCTAAGTTACTCCTCACTATGACC 59.170 42.308 0.00 0.00 31.22 4.02
385 1835 7.868906 AGTCTAAGTTACTCCTCACTATGAC 57.131 40.000 0.00 0.00 0.00 3.06
386 1836 8.770322 ACTAGTCTAAGTTACTCCTCACTATGA 58.230 37.037 0.00 0.00 0.00 2.15
387 1837 8.967664 ACTAGTCTAAGTTACTCCTCACTATG 57.032 38.462 0.00 0.00 0.00 2.23
390 1840 8.770322 TGATACTAGTCTAAGTTACTCCTCACT 58.230 37.037 0.00 0.00 0.00 3.41
391 1841 8.961294 TGATACTAGTCTAAGTTACTCCTCAC 57.039 38.462 0.00 0.00 0.00 3.51
443 1893 9.394767 TGACACTATTATCATGTTACTTTGCAT 57.605 29.630 0.00 0.00 0.00 3.96
444 1894 8.785329 TGACACTATTATCATGTTACTTTGCA 57.215 30.769 0.00 0.00 0.00 4.08
493 1943 9.394477 GCGTTTTTCAAGACAAAATAAGTCTAT 57.606 29.630 0.00 0.00 45.11 1.98
494 1944 8.617809 AGCGTTTTTCAAGACAAAATAAGTCTA 58.382 29.630 0.00 0.00 45.11 2.59
496 1946 7.679659 AGCGTTTTTCAAGACAAAATAAGTC 57.320 32.000 0.00 0.00 36.26 3.01
497 1947 7.375017 CGTAGCGTTTTTCAAGACAAAATAAGT 59.625 33.333 0.00 0.00 0.00 2.24
498 1948 7.375017 ACGTAGCGTTTTTCAAGACAAAATAAG 59.625 33.333 0.00 0.00 36.35 1.73
499 1949 7.188157 ACGTAGCGTTTTTCAAGACAAAATAA 58.812 30.769 0.00 0.00 36.35 1.40
500 1950 6.717413 ACGTAGCGTTTTTCAAGACAAAATA 58.283 32.000 0.00 0.00 36.35 1.40
501 1951 5.575019 ACGTAGCGTTTTTCAAGACAAAAT 58.425 33.333 0.00 0.00 36.35 1.82
502 1952 4.972201 ACGTAGCGTTTTTCAAGACAAAA 58.028 34.783 0.00 0.00 36.35 2.44
503 1953 4.603231 ACGTAGCGTTTTTCAAGACAAA 57.397 36.364 0.00 0.00 36.35 2.83
516 1966 9.467258 ACATAATATGTTAATGTAACGTAGCGT 57.533 29.630 0.00 0.00 41.63 5.07
541 1991 7.248437 GCAAGTATTTAATGTGAGGTGGTAAC 58.752 38.462 0.00 0.00 0.00 2.50
542 1992 6.376018 GGCAAGTATTTAATGTGAGGTGGTAA 59.624 38.462 0.00 0.00 0.00 2.85
543 1993 5.883673 GGCAAGTATTTAATGTGAGGTGGTA 59.116 40.000 0.00 0.00 0.00 3.25
544 1994 4.705023 GGCAAGTATTTAATGTGAGGTGGT 59.295 41.667 0.00 0.00 0.00 4.16
545 1995 4.704540 TGGCAAGTATTTAATGTGAGGTGG 59.295 41.667 0.00 0.00 0.00 4.61
546 1996 5.182950 TGTGGCAAGTATTTAATGTGAGGTG 59.817 40.000 0.00 0.00 0.00 4.00
547 1997 5.321102 TGTGGCAAGTATTTAATGTGAGGT 58.679 37.500 0.00 0.00 0.00 3.85
548 1998 5.895636 TGTGGCAAGTATTTAATGTGAGG 57.104 39.130 0.00 0.00 0.00 3.86
549 1999 7.645340 GCTTATGTGGCAAGTATTTAATGTGAG 59.355 37.037 0.00 0.00 0.00 3.51
550 2000 7.121907 TGCTTATGTGGCAAGTATTTAATGTGA 59.878 33.333 0.00 0.00 36.71 3.58
551 2001 7.257003 TGCTTATGTGGCAAGTATTTAATGTG 58.743 34.615 0.00 0.00 36.71 3.21
552 2002 7.403312 TGCTTATGTGGCAAGTATTTAATGT 57.597 32.000 0.00 0.00 36.71 2.71
563 2013 8.147058 TCTAAGAAATTTTTGCTTATGTGGCAA 58.853 29.630 0.00 0.00 46.12 4.52
564 2014 7.665690 TCTAAGAAATTTTTGCTTATGTGGCA 58.334 30.769 0.00 0.00 37.97 4.92
565 2015 7.814587 ACTCTAAGAAATTTTTGCTTATGTGGC 59.185 33.333 0.00 0.00 0.00 5.01
566 2016 9.132521 CACTCTAAGAAATTTTTGCTTATGTGG 57.867 33.333 14.92 2.53 31.93 4.17
567 2017 9.683069 ACACTCTAAGAAATTTTTGCTTATGTG 57.317 29.630 17.76 17.76 36.15 3.21
568 2018 9.683069 CACACTCTAAGAAATTTTTGCTTATGT 57.317 29.630 0.00 0.00 0.00 2.29
569 2019 8.642020 GCACACTCTAAGAAATTTTTGCTTATG 58.358 33.333 0.00 0.00 0.00 1.90
570 2020 8.579863 AGCACACTCTAAGAAATTTTTGCTTAT 58.420 29.630 0.00 0.00 32.81 1.73
571 2021 7.940850 AGCACACTCTAAGAAATTTTTGCTTA 58.059 30.769 0.00 0.00 32.81 3.09
572 2022 6.809869 AGCACACTCTAAGAAATTTTTGCTT 58.190 32.000 0.00 0.00 32.81 3.91
573 2023 6.396829 AGCACACTCTAAGAAATTTTTGCT 57.603 33.333 0.00 0.00 0.00 3.91
574 2024 7.809806 ACATAGCACACTCTAAGAAATTTTTGC 59.190 33.333 0.00 0.00 0.00 3.68
575 2025 9.683069 AACATAGCACACTCTAAGAAATTTTTG 57.317 29.630 0.00 0.00 0.00 2.44
578 2028 9.726438 AGTAACATAGCACACTCTAAGAAATTT 57.274 29.630 0.00 0.00 0.00 1.82
581 2031 7.974501 GCTAGTAACATAGCACACTCTAAGAAA 59.025 37.037 0.99 0.00 46.12 2.52
582 2032 7.481642 GCTAGTAACATAGCACACTCTAAGAA 58.518 38.462 0.99 0.00 46.12 2.52
583 2033 7.028926 GCTAGTAACATAGCACACTCTAAGA 57.971 40.000 0.99 0.00 46.12 2.10
595 2045 8.351461 GTGGGAGTAACTTAGCTAGTAACATAG 58.649 40.741 0.00 0.00 35.54 2.23
596 2046 8.057623 AGTGGGAGTAACTTAGCTAGTAACATA 58.942 37.037 0.00 0.00 35.54 2.29
597 2047 6.896307 AGTGGGAGTAACTTAGCTAGTAACAT 59.104 38.462 0.00 0.00 35.54 2.71
598 2048 6.251471 AGTGGGAGTAACTTAGCTAGTAACA 58.749 40.000 0.00 0.00 35.54 2.41
599 2049 6.772360 AGTGGGAGTAACTTAGCTAGTAAC 57.228 41.667 0.00 0.00 35.54 2.50
600 2050 8.277197 TCATAGTGGGAGTAACTTAGCTAGTAA 58.723 37.037 0.00 0.00 35.54 2.24
601 2051 7.718753 GTCATAGTGGGAGTAACTTAGCTAGTA 59.281 40.741 0.00 0.00 35.54 1.82
602 2052 6.546772 GTCATAGTGGGAGTAACTTAGCTAGT 59.453 42.308 0.00 0.00 39.32 2.57
603 2053 6.773685 AGTCATAGTGGGAGTAACTTAGCTAG 59.226 42.308 0.00 0.00 0.00 3.42
604 2054 6.670617 AGTCATAGTGGGAGTAACTTAGCTA 58.329 40.000 0.00 0.00 0.00 3.32
605 2055 5.520751 AGTCATAGTGGGAGTAACTTAGCT 58.479 41.667 0.00 0.00 0.00 3.32
606 2056 5.855740 AGTCATAGTGGGAGTAACTTAGC 57.144 43.478 0.00 0.00 0.00 3.09
607 2057 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
608 2058 5.832060 GGCTAGTCATAGTGGGAGTAACTTA 59.168 44.000 0.00 0.00 0.00 2.24
609 2059 4.650131 GGCTAGTCATAGTGGGAGTAACTT 59.350 45.833 0.00 0.00 0.00 2.66
610 2060 4.079096 AGGCTAGTCATAGTGGGAGTAACT 60.079 45.833 0.00 0.00 0.00 2.24
611 2061 4.216708 AGGCTAGTCATAGTGGGAGTAAC 58.783 47.826 0.00 0.00 0.00 2.50
612 2062 4.537945 AGGCTAGTCATAGTGGGAGTAA 57.462 45.455 0.00 0.00 0.00 2.24
613 2063 5.658198 TTAGGCTAGTCATAGTGGGAGTA 57.342 43.478 0.00 0.00 0.00 2.59
614 2064 4.537945 TTAGGCTAGTCATAGTGGGAGT 57.462 45.455 0.00 0.00 0.00 3.85
615 2065 7.540474 TTTATTAGGCTAGTCATAGTGGGAG 57.460 40.000 0.00 0.00 0.00 4.30
616 2066 6.014499 GCTTTATTAGGCTAGTCATAGTGGGA 60.014 42.308 0.00 0.00 0.00 4.37
617 2067 6.166982 GCTTTATTAGGCTAGTCATAGTGGG 58.833 44.000 0.00 0.00 0.00 4.61
618 2068 6.647067 GTGCTTTATTAGGCTAGTCATAGTGG 59.353 42.308 0.00 0.00 0.00 4.00
619 2069 6.363626 CGTGCTTTATTAGGCTAGTCATAGTG 59.636 42.308 0.00 0.00 0.00 2.74
620 2070 6.264744 TCGTGCTTTATTAGGCTAGTCATAGT 59.735 38.462 0.00 0.00 0.00 2.12
621 2071 6.678878 TCGTGCTTTATTAGGCTAGTCATAG 58.321 40.000 0.00 0.00 0.00 2.23
622 2072 6.644248 TCGTGCTTTATTAGGCTAGTCATA 57.356 37.500 0.00 0.00 0.00 2.15
623 2073 5.531122 TCGTGCTTTATTAGGCTAGTCAT 57.469 39.130 0.00 0.00 0.00 3.06
624 2074 4.994907 TCGTGCTTTATTAGGCTAGTCA 57.005 40.909 0.00 0.00 0.00 3.41
625 2075 7.941795 TTAATCGTGCTTTATTAGGCTAGTC 57.058 36.000 0.00 0.00 0.00 2.59
626 2076 8.904099 AATTAATCGTGCTTTATTAGGCTAGT 57.096 30.769 0.00 0.00 0.00 2.57
627 2077 9.209175 AGAATTAATCGTGCTTTATTAGGCTAG 57.791 33.333 0.00 0.00 0.00 3.42
629 2079 9.209175 CTAGAATTAATCGTGCTTTATTAGGCT 57.791 33.333 0.00 0.00 0.00 4.58
630 2080 8.989980 ACTAGAATTAATCGTGCTTTATTAGGC 58.010 33.333 0.00 0.00 0.00 3.93
652 2102 5.175388 AGCCAAAAGTTTAGGGGTACTAG 57.825 43.478 8.68 0.00 32.16 2.57
658 2108 4.681074 TTCAAAGCCAAAAGTTTAGGGG 57.319 40.909 7.99 3.23 0.00 4.79
829 2295 7.189087 AGAAGAGAAGGGAAGAGAAGAGTATT 58.811 38.462 0.00 0.00 0.00 1.89
840 2306 5.716703 AGAAGAGAAGAGAAGAGAAGGGAAG 59.283 44.000 0.00 0.00 0.00 3.46
841 2307 5.650283 AGAAGAGAAGAGAAGAGAAGGGAA 58.350 41.667 0.00 0.00 0.00 3.97
842 2308 5.261216 GAGAAGAGAAGAGAAGAGAAGGGA 58.739 45.833 0.00 0.00 0.00 4.20
843 2309 4.402474 GGAGAAGAGAAGAGAAGAGAAGGG 59.598 50.000 0.00 0.00 0.00 3.95
844 2310 4.096382 CGGAGAAGAGAAGAGAAGAGAAGG 59.904 50.000 0.00 0.00 0.00 3.46
864 2330 2.743538 GCAGTGATGCTGTGCGGA 60.744 61.111 0.00 0.00 46.64 5.54
892 2358 2.570442 TTTGGTTTGGTTTGCTCGAC 57.430 45.000 0.00 0.00 0.00 4.20
895 2362 4.058124 GGAGATTTTGGTTTGGTTTGCTC 58.942 43.478 0.00 0.00 0.00 4.26
956 2454 1.035923 CTCGCCTCCAGATGAAGCTA 58.964 55.000 0.00 0.00 0.00 3.32
986 2484 4.216257 CCATATCCATGATCGGGTTCAAAC 59.784 45.833 0.00 0.00 33.67 2.93
995 2497 0.723414 GTGCGCCATATCCATGATCG 59.277 55.000 4.18 0.00 33.67 3.69
996 2498 0.723414 CGTGCGCCATATCCATGATC 59.277 55.000 4.18 0.00 33.67 2.92
997 2499 0.321346 TCGTGCGCCATATCCATGAT 59.679 50.000 4.18 0.00 33.67 2.45
998 2500 0.319813 CTCGTGCGCCATATCCATGA 60.320 55.000 4.18 0.00 33.67 3.07
1164 2666 2.442212 TTGGATTGTGCAGTGCAATG 57.558 45.000 21.67 10.38 41.47 2.82
1201 2703 2.283145 AGCACTTGAAAGACCAGCAT 57.717 45.000 0.00 0.00 0.00 3.79
1203 2705 1.466558 GCTAGCACTTGAAAGACCAGC 59.533 52.381 10.63 0.00 0.00 4.85
1204 2706 2.740981 CAGCTAGCACTTGAAAGACCAG 59.259 50.000 18.83 0.00 0.00 4.00
1206 2708 2.772287 ACAGCTAGCACTTGAAAGACC 58.228 47.619 18.83 0.00 0.00 3.85
1207 2709 4.561105 ACTACAGCTAGCACTTGAAAGAC 58.439 43.478 18.83 0.00 0.00 3.01
1265 2775 4.100189 AGAAATATCTAAGCCTCACGCACT 59.900 41.667 0.00 0.00 35.01 4.40
1266 2776 4.372656 AGAAATATCTAAGCCTCACGCAC 58.627 43.478 0.00 0.00 35.01 5.34
1267 2777 4.672587 AGAAATATCTAAGCCTCACGCA 57.327 40.909 0.00 0.00 35.01 5.24
1268 2778 5.774630 ACTAGAAATATCTAAGCCTCACGC 58.225 41.667 0.00 0.00 37.70 5.34
1302 2819 0.469144 GTTTGTTGCTTCCCCCTCCA 60.469 55.000 0.00 0.00 0.00 3.86
1303 2820 1.185618 GGTTTGTTGCTTCCCCCTCC 61.186 60.000 0.00 0.00 0.00 4.30
1304 2821 0.178961 AGGTTTGTTGCTTCCCCCTC 60.179 55.000 0.00 0.00 0.00 4.30
1305 2822 0.469892 CAGGTTTGTTGCTTCCCCCT 60.470 55.000 0.00 0.00 0.00 4.79
1393 2910 5.182190 TCTCATTCACTATAGCTAGCTTCCG 59.818 44.000 24.88 13.39 0.00 4.30
1395 2912 7.390440 TCTCTCTCATTCACTATAGCTAGCTTC 59.610 40.741 24.88 0.00 0.00 3.86
1396 2913 7.230747 TCTCTCTCATTCACTATAGCTAGCTT 58.769 38.462 24.88 13.16 0.00 3.74
1397 2914 6.778821 TCTCTCTCATTCACTATAGCTAGCT 58.221 40.000 23.12 23.12 0.00 3.32
1398 2915 7.415541 CCATCTCTCTCATTCACTATAGCTAGC 60.416 44.444 6.62 6.62 0.00 3.42
1400 2917 7.694093 TCCATCTCTCTCATTCACTATAGCTA 58.306 38.462 0.00 0.00 0.00 3.32
1423 2951 1.900254 AATTCTTCCCCTCTCCCTCC 58.100 55.000 0.00 0.00 0.00 4.30
1431 2959 5.715279 GCTAACCACTAAAAATTCTTCCCCT 59.285 40.000 0.00 0.00 0.00 4.79
1585 3117 4.566004 TCACATCAGTGGTTGCTACTAAC 58.434 43.478 0.00 0.00 45.91 2.34
1594 3126 3.507162 TGGAACATCACATCAGTGGTT 57.493 42.857 0.00 0.00 45.91 3.67
1811 3354 2.789203 GATCTCGTTGTCGGTGCGC 61.789 63.158 0.00 0.00 37.69 6.09
2207 3750 4.039357 CACTCGGCACCGTCGACT 62.039 66.667 14.70 0.00 33.73 4.18
2210 3753 4.657824 AACCACTCGGCACCGTCG 62.658 66.667 9.23 4.41 40.74 5.12
2267 3810 3.695606 AGCTGGTCCGTGTCGCAT 61.696 61.111 0.00 0.00 0.00 4.73
2384 3936 1.516603 GTCTACGTCGAAGCTGCCC 60.517 63.158 0.00 0.00 0.00 5.36
2399 3951 0.180642 CCATGCTCCAGATGCTGTCT 59.819 55.000 0.00 0.00 37.80 3.41
2462 4014 0.394352 AGGATTTCCATGCCACCGTC 60.394 55.000 0.00 0.00 38.89 4.79
2525 4083 3.825833 GATCTGCTACGCGTCCCCG 62.826 68.421 18.63 4.42 37.07 5.73
2526 4084 2.027751 GATCTGCTACGCGTCCCC 59.972 66.667 18.63 5.81 0.00 4.81
2527 4085 2.027751 GGATCTGCTACGCGTCCC 59.972 66.667 18.63 8.81 0.00 4.46
2553 4111 6.631962 TCTCCTTCTTCTTCTAATCCGTTTC 58.368 40.000 0.00 0.00 0.00 2.78
2568 4126 1.981495 CAGGTGGTTCCTCTCCTTCTT 59.019 52.381 0.00 0.00 46.24 2.52
2569 4127 1.650528 CAGGTGGTTCCTCTCCTTCT 58.349 55.000 0.00 0.00 46.24 2.85
2570 4128 0.615850 CCAGGTGGTTCCTCTCCTTC 59.384 60.000 0.00 0.00 46.24 3.46
2612 4170 4.250464 TCTTCACGTGCAGGGTAAATTAG 58.750 43.478 15.25 0.00 0.00 1.73
2663 4221 1.734477 CACAGGAGACAAGACGGCG 60.734 63.158 4.80 4.80 0.00 6.46
2672 4230 9.578439 ACGTAGTAATAAATTAACACAGGAGAC 57.422 33.333 0.00 0.00 41.94 3.36
2710 4271 6.237595 GCTTCTGCTACACTTTTACGTATCTG 60.238 42.308 0.00 0.00 36.03 2.90
2746 4307 1.084370 GGCGGCACAGCTAACACTAG 61.084 60.000 3.07 0.00 37.29 2.57
2747 4308 1.079405 GGCGGCACAGCTAACACTA 60.079 57.895 3.07 0.00 37.29 2.74
2748 4309 2.358737 GGCGGCACAGCTAACACT 60.359 61.111 3.07 0.00 37.29 3.55
2842 5406 9.953697 CAGTTCACTTCATATACTAGTACTTCC 57.046 37.037 4.31 0.00 0.00 3.46
3122 5694 7.931948 CGTACTATATTTTGAAATGGAGGGAGT 59.068 37.037 0.00 0.00 0.00 3.85
3123 5695 7.931948 ACGTACTATATTTTGAAATGGAGGGAG 59.068 37.037 0.00 0.00 0.00 4.30
3124 5696 7.798071 ACGTACTATATTTTGAAATGGAGGGA 58.202 34.615 0.00 0.00 0.00 4.20
3125 5697 7.931948 AGACGTACTATATTTTGAAATGGAGGG 59.068 37.037 0.00 0.00 0.00 4.30
3126 5698 8.765219 CAGACGTACTATATTTTGAAATGGAGG 58.235 37.037 0.00 0.00 0.00 4.30
3127 5699 8.276325 GCAGACGTACTATATTTTGAAATGGAG 58.724 37.037 0.00 0.06 0.00 3.86
3128 5700 7.042992 CGCAGACGTACTATATTTTGAAATGGA 60.043 37.037 0.00 0.00 33.53 3.41
3129 5701 7.063456 CGCAGACGTACTATATTTTGAAATGG 58.937 38.462 0.00 0.00 33.53 3.16
3148 5720 1.149148 GGACCTCAGAAAACGCAGAC 58.851 55.000 0.00 0.00 0.00 3.51
3149 5721 0.756294 TGGACCTCAGAAAACGCAGA 59.244 50.000 0.00 0.00 0.00 4.26
3150 5722 1.264288 GTTGGACCTCAGAAAACGCAG 59.736 52.381 0.00 0.00 0.00 5.18
3151 5723 1.134220 AGTTGGACCTCAGAAAACGCA 60.134 47.619 0.00 0.00 0.00 5.24
3152 5724 1.594331 AGTTGGACCTCAGAAAACGC 58.406 50.000 0.00 0.00 0.00 4.84
3153 5725 3.625764 TCAAAGTTGGACCTCAGAAAACG 59.374 43.478 0.00 0.00 0.00 3.60
3154 5726 4.921547 GTCAAAGTTGGACCTCAGAAAAC 58.078 43.478 0.00 0.00 0.00 2.43
3164 5736 8.145122 TGGTTAAATTTATGGTCAAAGTTGGAC 58.855 33.333 1.31 1.31 29.44 4.02
3165 5737 8.251383 TGGTTAAATTTATGGTCAAAGTTGGA 57.749 30.769 0.00 0.00 29.44 3.53
3166 5738 8.769891 GTTGGTTAAATTTATGGTCAAAGTTGG 58.230 33.333 0.00 0.00 29.44 3.77
3167 5739 9.319143 TGTTGGTTAAATTTATGGTCAAAGTTG 57.681 29.630 0.00 0.00 29.44 3.16
3168 5740 9.892130 TTGTTGGTTAAATTTATGGTCAAAGTT 57.108 25.926 0.00 0.00 31.36 2.66
3169 5741 9.541143 CTTGTTGGTTAAATTTATGGTCAAAGT 57.459 29.630 0.00 0.00 0.00 2.66
3170 5742 9.757227 TCTTGTTGGTTAAATTTATGGTCAAAG 57.243 29.630 0.00 1.33 0.00 2.77
3171 5743 9.535878 GTCTTGTTGGTTAAATTTATGGTCAAA 57.464 29.630 0.00 0.00 0.00 2.69
3172 5744 8.145122 GGTCTTGTTGGTTAAATTTATGGTCAA 58.855 33.333 0.00 0.00 0.00 3.18
3173 5745 7.287927 TGGTCTTGTTGGTTAAATTTATGGTCA 59.712 33.333 0.00 0.00 0.00 4.02
3174 5746 7.662897 TGGTCTTGTTGGTTAAATTTATGGTC 58.337 34.615 0.00 0.00 0.00 4.02
3175 5747 7.604657 TGGTCTTGTTGGTTAAATTTATGGT 57.395 32.000 0.00 0.00 0.00 3.55
3176 5748 8.147704 AGTTGGTCTTGTTGGTTAAATTTATGG 58.852 33.333 0.00 0.00 0.00 2.74
3177 5749 8.977505 CAGTTGGTCTTGTTGGTTAAATTTATG 58.022 33.333 0.00 0.00 0.00 1.90
3178 5750 7.655732 GCAGTTGGTCTTGTTGGTTAAATTTAT 59.344 33.333 0.00 0.00 0.00 1.40
3179 5751 6.981559 GCAGTTGGTCTTGTTGGTTAAATTTA 59.018 34.615 0.00 0.00 0.00 1.40
3180 5752 5.815222 GCAGTTGGTCTTGTTGGTTAAATTT 59.185 36.000 0.00 0.00 0.00 1.82
3181 5753 5.356426 GCAGTTGGTCTTGTTGGTTAAATT 58.644 37.500 0.00 0.00 0.00 1.82
3182 5754 4.499019 CGCAGTTGGTCTTGTTGGTTAAAT 60.499 41.667 0.00 0.00 0.00 1.40
3183 5755 3.181495 CGCAGTTGGTCTTGTTGGTTAAA 60.181 43.478 0.00 0.00 0.00 1.52
3184 5756 2.356382 CGCAGTTGGTCTTGTTGGTTAA 59.644 45.455 0.00 0.00 0.00 2.01
3185 5757 1.944024 CGCAGTTGGTCTTGTTGGTTA 59.056 47.619 0.00 0.00 0.00 2.85
3186 5758 0.738389 CGCAGTTGGTCTTGTTGGTT 59.262 50.000 0.00 0.00 0.00 3.67
3187 5759 1.101049 CCGCAGTTGGTCTTGTTGGT 61.101 55.000 0.00 0.00 0.00 3.67
3188 5760 1.101049 ACCGCAGTTGGTCTTGTTGG 61.101 55.000 0.00 0.00 37.91 3.77
3189 5761 0.029300 CACCGCAGTTGGTCTTGTTG 59.971 55.000 0.00 0.00 41.38 3.33
3190 5762 1.101049 CCACCGCAGTTGGTCTTGTT 61.101 55.000 0.00 0.00 41.38 2.83
3191 5763 1.525995 CCACCGCAGTTGGTCTTGT 60.526 57.895 0.00 0.00 41.38 3.16
3192 5764 2.260869 CCCACCGCAGTTGGTCTTG 61.261 63.158 0.00 0.00 41.38 3.02
3193 5765 2.113139 CCCACCGCAGTTGGTCTT 59.887 61.111 0.00 0.00 41.38 3.01
3194 5766 2.847234 TCCCACCGCAGTTGGTCT 60.847 61.111 0.00 0.00 41.38 3.85
3195 5767 2.358737 CTCCCACCGCAGTTGGTC 60.359 66.667 0.00 0.00 41.38 4.02
3196 5768 1.990160 TTTCTCCCACCGCAGTTGGT 61.990 55.000 0.00 0.00 45.21 3.67
3197 5769 0.821711 TTTTCTCCCACCGCAGTTGG 60.822 55.000 0.00 0.00 0.00 3.77
3198 5770 1.028905 TTTTTCTCCCACCGCAGTTG 58.971 50.000 0.00 0.00 0.00 3.16
3199 5771 1.995376 ATTTTTCTCCCACCGCAGTT 58.005 45.000 0.00 0.00 0.00 3.16
3200 5772 1.995376 AATTTTTCTCCCACCGCAGT 58.005 45.000 0.00 0.00 0.00 4.40
3201 5773 7.504924 TTATATAATTTTTCTCCCACCGCAG 57.495 36.000 0.00 0.00 0.00 5.18
3202 5774 8.356657 CAATTATATAATTTTTCTCCCACCGCA 58.643 33.333 16.47 0.00 33.88 5.69
3203 5775 8.573035 TCAATTATATAATTTTTCTCCCACCGC 58.427 33.333 16.47 0.00 33.88 5.68
3245 5817 9.722056 GAGCAAAAATTATATCAGTGAATTCGT 57.278 29.630 0.00 0.00 0.00 3.85
3246 5818 9.173939 GGAGCAAAAATTATATCAGTGAATTCG 57.826 33.333 0.00 0.00 0.00 3.34
3247 5819 9.468532 GGGAGCAAAAATTATATCAGTGAATTC 57.531 33.333 0.00 0.00 0.00 2.17
3248 5820 8.137437 CGGGAGCAAAAATTATATCAGTGAATT 58.863 33.333 0.00 0.00 0.00 2.17
3249 5821 7.651808 CGGGAGCAAAAATTATATCAGTGAAT 58.348 34.615 0.00 0.00 0.00 2.57
3250 5822 7.026631 CGGGAGCAAAAATTATATCAGTGAA 57.973 36.000 0.00 0.00 0.00 3.18
3251 5823 6.618287 CGGGAGCAAAAATTATATCAGTGA 57.382 37.500 0.00 0.00 0.00 3.41
3276 5848 5.192496 CCGTAAATTTAACTACCGATTGCG 58.808 41.667 0.00 0.00 37.24 4.85
3277 5849 6.110543 ACCGTAAATTTAACTACCGATTGC 57.889 37.500 0.00 0.00 0.00 3.56
3278 5850 7.293402 TGACCGTAAATTTAACTACCGATTG 57.707 36.000 0.00 0.00 0.00 2.67
3279 5851 7.903995 TTGACCGTAAATTTAACTACCGATT 57.096 32.000 0.00 0.00 0.00 3.34
3280 5852 7.903995 TTTGACCGTAAATTTAACTACCGAT 57.096 32.000 0.00 0.00 0.00 4.18
3281 5853 7.903995 ATTTGACCGTAAATTTAACTACCGA 57.096 32.000 0.00 0.00 0.00 4.69
3282 5854 8.842777 CAAATTTGACCGTAAATTTAACTACCG 58.157 33.333 13.08 0.00 44.23 4.02
3283 5855 9.896263 TCAAATTTGACCGTAAATTTAACTACC 57.104 29.630 16.91 0.00 44.23 3.18
3286 5858 8.974408 GCTTCAAATTTGACCGTAAATTTAACT 58.026 29.630 20.35 0.00 44.23 2.24
3287 5859 8.756864 TGCTTCAAATTTGACCGTAAATTTAAC 58.243 29.630 20.35 0.00 44.23 2.01
3288 5860 8.756864 GTGCTTCAAATTTGACCGTAAATTTAA 58.243 29.630 20.35 0.81 44.23 1.52
3289 5861 7.113684 CGTGCTTCAAATTTGACCGTAAATTTA 59.886 33.333 20.35 1.32 44.23 1.40
3290 5862 6.074569 CGTGCTTCAAATTTGACCGTAAATTT 60.075 34.615 20.35 0.00 45.92 1.82
3291 5863 5.401079 CGTGCTTCAAATTTGACCGTAAATT 59.599 36.000 20.35 0.00 40.84 1.82
3292 5864 4.915085 CGTGCTTCAAATTTGACCGTAAAT 59.085 37.500 20.35 0.00 36.83 1.40
3293 5865 4.035324 TCGTGCTTCAAATTTGACCGTAAA 59.965 37.500 20.35 4.20 36.83 2.01
3294 5866 3.560481 TCGTGCTTCAAATTTGACCGTAA 59.440 39.130 20.35 4.92 36.83 3.18
3295 5867 3.132160 TCGTGCTTCAAATTTGACCGTA 58.868 40.909 20.35 11.14 36.83 4.02
3296 5868 1.944024 TCGTGCTTCAAATTTGACCGT 59.056 42.857 20.35 0.00 36.83 4.83
3297 5869 2.223144 TCTCGTGCTTCAAATTTGACCG 59.777 45.455 20.35 18.00 36.83 4.79
3298 5870 3.896648 TCTCGTGCTTCAAATTTGACC 57.103 42.857 20.35 14.30 36.83 4.02
3299 5871 6.831769 TCTATTCTCGTGCTTCAAATTTGAC 58.168 36.000 20.35 10.72 36.83 3.18
3300 5872 6.650807 ACTCTATTCTCGTGCTTCAAATTTGA 59.349 34.615 16.91 16.91 34.92 2.69
3301 5873 6.835914 ACTCTATTCTCGTGCTTCAAATTTG 58.164 36.000 12.15 12.15 0.00 2.32
3302 5874 8.547967 TTACTCTATTCTCGTGCTTCAAATTT 57.452 30.769 0.00 0.00 0.00 1.82
3303 5875 7.201565 GCTTACTCTATTCTCGTGCTTCAAATT 60.202 37.037 0.00 0.00 0.00 1.82
3304 5876 6.256757 GCTTACTCTATTCTCGTGCTTCAAAT 59.743 38.462 0.00 0.00 0.00 2.32
3305 5877 5.577164 GCTTACTCTATTCTCGTGCTTCAAA 59.423 40.000 0.00 0.00 0.00 2.69
3306 5878 5.103000 GCTTACTCTATTCTCGTGCTTCAA 58.897 41.667 0.00 0.00 0.00 2.69
3307 5879 4.157840 TGCTTACTCTATTCTCGTGCTTCA 59.842 41.667 0.00 0.00 0.00 3.02
3308 5880 4.501198 GTGCTTACTCTATTCTCGTGCTTC 59.499 45.833 0.00 0.00 0.00 3.86
3309 5881 4.158764 AGTGCTTACTCTATTCTCGTGCTT 59.841 41.667 0.00 0.00 0.00 3.91
3310 5882 3.697045 AGTGCTTACTCTATTCTCGTGCT 59.303 43.478 0.00 0.00 0.00 4.40
3311 5883 4.035278 AGTGCTTACTCTATTCTCGTGC 57.965 45.455 0.00 0.00 0.00 5.34
3312 5884 9.335891 CAATATAGTGCTTACTCTATTCTCGTG 57.664 37.037 0.00 0.00 35.01 4.35
3313 5885 9.069082 ACAATATAGTGCTTACTCTATTCTCGT 57.931 33.333 0.00 0.00 35.01 4.18
3314 5886 9.335891 CACAATATAGTGCTTACTCTATTCTCG 57.664 37.037 0.00 0.00 35.01 4.04
3315 5887 9.632807 CCACAATATAGTGCTTACTCTATTCTC 57.367 37.037 0.00 0.00 38.18 2.87
3316 5888 9.368416 TCCACAATATAGTGCTTACTCTATTCT 57.632 33.333 0.00 0.00 38.18 2.40
3317 5889 9.982651 TTCCACAATATAGTGCTTACTCTATTC 57.017 33.333 0.00 0.00 38.18 1.75
3319 5891 9.935241 CATTCCACAATATAGTGCTTACTCTAT 57.065 33.333 0.00 0.00 38.18 1.98
3320 5892 9.143155 TCATTCCACAATATAGTGCTTACTCTA 57.857 33.333 0.00 0.00 38.18 2.43
3321 5893 8.023021 TCATTCCACAATATAGTGCTTACTCT 57.977 34.615 0.00 0.00 38.18 3.24
3322 5894 8.662781 TTCATTCCACAATATAGTGCTTACTC 57.337 34.615 0.00 0.00 38.18 2.59
3323 5895 7.716998 CCTTCATTCCACAATATAGTGCTTACT 59.283 37.037 0.00 0.00 38.18 2.24
3324 5896 7.041098 CCCTTCATTCCACAATATAGTGCTTAC 60.041 40.741 0.00 0.00 38.18 2.34
3325 5897 6.998074 CCCTTCATTCCACAATATAGTGCTTA 59.002 38.462 0.00 0.00 38.18 3.09
3326 5898 5.829924 CCCTTCATTCCACAATATAGTGCTT 59.170 40.000 0.00 0.00 38.18 3.91
3327 5899 5.132648 TCCCTTCATTCCACAATATAGTGCT 59.867 40.000 0.00 0.00 38.18 4.40
3328 5900 5.376625 TCCCTTCATTCCACAATATAGTGC 58.623 41.667 0.00 0.00 38.18 4.40
3329 5901 6.595682 ACTCCCTTCATTCCACAATATAGTG 58.404 40.000 0.00 0.00 39.21 2.74
3330 5902 6.831664 ACTCCCTTCATTCCACAATATAGT 57.168 37.500 0.00 0.00 0.00 2.12
3331 5903 7.162082 GGTACTCCCTTCATTCCACAATATAG 58.838 42.308 0.00 0.00 0.00 1.31
3332 5904 6.617784 TGGTACTCCCTTCATTCCACAATATA 59.382 38.462 0.00 0.00 0.00 0.86
3333 5905 5.431731 TGGTACTCCCTTCATTCCACAATAT 59.568 40.000 0.00 0.00 0.00 1.28
3334 5906 4.785914 TGGTACTCCCTTCATTCCACAATA 59.214 41.667 0.00 0.00 0.00 1.90
3335 5907 3.591527 TGGTACTCCCTTCATTCCACAAT 59.408 43.478 0.00 0.00 0.00 2.71
3336 5908 2.983192 TGGTACTCCCTTCATTCCACAA 59.017 45.455 0.00 0.00 0.00 3.33
3337 5909 2.571653 CTGGTACTCCCTTCATTCCACA 59.428 50.000 0.00 0.00 0.00 4.17
3338 5910 2.838202 TCTGGTACTCCCTTCATTCCAC 59.162 50.000 0.00 0.00 0.00 4.02
3339 5911 3.199442 TCTGGTACTCCCTTCATTCCA 57.801 47.619 0.00 0.00 0.00 3.53
3340 5912 4.569719 TTTCTGGTACTCCCTTCATTCC 57.430 45.455 0.00 0.00 0.00 3.01
3341 5913 6.180472 TGAATTTCTGGTACTCCCTTCATTC 58.820 40.000 0.00 0.00 0.00 2.67
3342 5914 6.139679 TGAATTTCTGGTACTCCCTTCATT 57.860 37.500 0.00 0.00 0.00 2.57
3343 5915 5.251700 ACTGAATTTCTGGTACTCCCTTCAT 59.748 40.000 8.00 0.00 0.00 2.57
3344 5916 4.597507 ACTGAATTTCTGGTACTCCCTTCA 59.402 41.667 8.00 0.00 0.00 3.02
3345 5917 5.167303 ACTGAATTTCTGGTACTCCCTTC 57.833 43.478 8.00 0.00 0.00 3.46
3346 5918 5.337330 CGTACTGAATTTCTGGTACTCCCTT 60.337 44.000 20.04 0.20 34.26 3.95
3347 5919 4.159879 CGTACTGAATTTCTGGTACTCCCT 59.840 45.833 20.04 0.70 34.26 4.20
3348 5920 4.159135 TCGTACTGAATTTCTGGTACTCCC 59.841 45.833 20.04 0.00 34.26 4.30
3349 5921 5.320549 TCGTACTGAATTTCTGGTACTCC 57.679 43.478 20.04 0.00 34.26 3.85
3350 5922 4.799428 GCTCGTACTGAATTTCTGGTACTC 59.201 45.833 20.04 11.76 34.26 2.59
3351 5923 4.674623 CGCTCGTACTGAATTTCTGGTACT 60.675 45.833 20.04 2.48 34.26 2.73
3352 5924 3.546670 CGCTCGTACTGAATTTCTGGTAC 59.453 47.826 16.13 16.13 33.42 3.34
3379 5951 1.155889 CTGTTGGCGCTGATGTAACA 58.844 50.000 7.64 8.72 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.