Multiple sequence alignment - TraesCS4A01G123100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G123100 chr4A 100.000 2504 0 0 1 2504 153778557 153781060 0.000000e+00 4625.0
1 TraesCS4A01G123100 chr4A 92.273 220 16 1 69 288 153776511 153776293 6.730000e-81 311.0
2 TraesCS4A01G123100 chr4D 93.224 1712 69 26 294 1999 319702916 319701246 0.000000e+00 2475.0
3 TraesCS4A01G123100 chr4D 85.366 369 30 8 2083 2450 319700803 319700458 6.580000e-96 361.0
4 TraesCS4A01G123100 chr4D 90.323 93 5 1 1990 2082 319700918 319700830 4.380000e-23 119.0
5 TraesCS4A01G123100 chr4B 97.094 1411 33 6 346 1754 401880761 401882165 0.000000e+00 2372.0
6 TraesCS4A01G123100 chr4B 80.423 756 70 30 1789 2504 401883904 401884621 2.870000e-139 505.0
7 TraesCS4A01G123100 chr2D 95.222 293 12 2 1 291 499307897 499307605 1.750000e-126 462.0
8 TraesCS4A01G123100 chr2D 92.952 227 15 1 69 294 499309790 499310016 1.860000e-86 329.0
9 TraesCS4A01G123100 chr2D 87.059 85 11 0 1786 1870 387734172 387734088 2.050000e-16 97.1
10 TraesCS4A01G123100 chr2D 84.722 72 7 4 222 292 247439286 247439218 4.470000e-08 69.4
11 TraesCS4A01G123100 chr7B 82.188 393 54 5 2083 2460 481696094 481695703 8.640000e-85 324.0
12 TraesCS4A01G123100 chr7B 94.737 38 1 1 2045 2082 481696157 481696121 9.670000e-05 58.4
13 TraesCS4A01G123100 chr6B 77.600 500 78 15 2001 2466 645414 645913 3.170000e-69 272.0
14 TraesCS4A01G123100 chr6B 82.394 284 29 9 2185 2466 662237998 662237734 6.970000e-56 228.0
15 TraesCS4A01G123100 chr6B 82.727 110 17 2 1753 1860 405058505 405058614 2.050000e-16 97.1
16 TraesCS4A01G123100 chr6D 89.041 219 21 2 76 292 358077634 358077417 4.110000e-68 268.0
17 TraesCS4A01G123100 chr6D 86.301 73 9 1 2001 2072 412973668 412973740 7.430000e-11 78.7
18 TraesCS4A01G123100 chr6D 100.000 30 0 0 1789 1818 73589748 73589777 3.480000e-04 56.5
19 TraesCS4A01G123100 chr6D 100.000 30 0 0 1789 1818 73589792 73589821 3.480000e-04 56.5
20 TraesCS4A01G123100 chr5A 88.318 214 24 1 76 289 659357099 659357311 3.200000e-64 255.0
21 TraesCS4A01G123100 chr1D 86.449 214 29 0 76 289 3391326 3391539 4.160000e-58 235.0
22 TraesCS4A01G123100 chr1B 84.862 218 30 3 76 290 573578320 573578537 1.510000e-52 217.0
23 TraesCS4A01G123100 chr5D 90.541 74 6 1 2000 2072 447522944 447523017 2.050000e-16 97.1
24 TraesCS4A01G123100 chr7D 94.737 57 3 0 1772 1828 92762063 92762007 3.430000e-14 89.8
25 TraesCS4A01G123100 chr3D 85.057 87 11 2 1751 1835 528813815 528813729 1.230000e-13 87.9
26 TraesCS4A01G123100 chr6A 90.909 44 4 0 1770 1813 387061845 387061888 2.690000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G123100 chr4A 153778557 153781060 2503 False 4625.0 4625 100.000000 1 2504 1 chr4A.!!$F1 2503
1 TraesCS4A01G123100 chr4D 319700458 319702916 2458 True 985.0 2475 89.637667 294 2450 3 chr4D.!!$R1 2156
2 TraesCS4A01G123100 chr4B 401880761 401884621 3860 False 1438.5 2372 88.758500 346 2504 2 chr4B.!!$F1 2158

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
939 943 0.037326 AAACAGAGATCGCGCTTCCA 60.037 50.0 5.56 0.0 0.0 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2401 4484 0.100682 CCACGTCTACCATCTCACCG 59.899 60.0 0.0 0.0 0.0 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.187058 GGCAACACCGCAATCGAT 58.813 55.556 0.00 0.00 38.10 3.59
27 28 1.062525 GGCAACACCGCAATCGATC 59.937 57.895 0.00 0.00 38.10 3.69
28 29 1.296867 GCAACACCGCAATCGATCG 60.297 57.895 9.36 9.36 38.10 3.69
29 30 1.692148 GCAACACCGCAATCGATCGA 61.692 55.000 21.86 21.86 38.10 3.59
30 31 0.298707 CAACACCGCAATCGATCGAG 59.701 55.000 23.84 11.87 38.10 4.04
31 32 1.421410 AACACCGCAATCGATCGAGC 61.421 55.000 23.84 20.03 38.10 5.03
32 33 1.878069 CACCGCAATCGATCGAGCA 60.878 57.895 23.84 0.00 38.10 4.26
33 34 1.153647 ACCGCAATCGATCGAGCAA 60.154 52.632 23.84 0.00 38.10 3.91
34 35 1.273887 CCGCAATCGATCGAGCAAC 59.726 57.895 23.84 11.45 38.10 4.17
35 36 1.148157 CCGCAATCGATCGAGCAACT 61.148 55.000 23.84 2.81 38.10 3.16
36 37 0.043566 CGCAATCGATCGAGCAACTG 60.044 55.000 23.84 14.88 38.10 3.16
37 38 1.280982 GCAATCGATCGAGCAACTGA 58.719 50.000 23.84 0.00 0.00 3.41
38 39 1.660607 GCAATCGATCGAGCAACTGAA 59.339 47.619 23.84 0.00 0.00 3.02
39 40 2.286294 GCAATCGATCGAGCAACTGAAT 59.714 45.455 23.84 0.00 0.00 2.57
40 41 3.490896 GCAATCGATCGAGCAACTGAATA 59.509 43.478 23.84 0.00 0.00 1.75
41 42 4.025730 GCAATCGATCGAGCAACTGAATAA 60.026 41.667 23.84 0.00 0.00 1.40
42 43 5.502382 GCAATCGATCGAGCAACTGAATAAA 60.502 40.000 23.84 0.00 0.00 1.40
43 44 6.477742 CAATCGATCGAGCAACTGAATAAAA 58.522 36.000 23.84 0.00 0.00 1.52
44 45 6.851222 ATCGATCGAGCAACTGAATAAAAT 57.149 33.333 23.84 0.00 0.00 1.82
45 46 6.274001 TCGATCGAGCAACTGAATAAAATC 57.726 37.500 15.15 0.00 0.00 2.17
46 47 6.042777 TCGATCGAGCAACTGAATAAAATCT 58.957 36.000 15.15 0.00 0.00 2.40
47 48 6.199154 TCGATCGAGCAACTGAATAAAATCTC 59.801 38.462 15.15 0.00 0.00 2.75
48 49 6.019559 CGATCGAGCAACTGAATAAAATCTCA 60.020 38.462 10.26 0.00 0.00 3.27
49 50 6.653273 TCGAGCAACTGAATAAAATCTCAG 57.347 37.500 0.00 0.00 43.90 3.35
50 51 5.063944 TCGAGCAACTGAATAAAATCTCAGC 59.936 40.000 0.00 0.00 42.39 4.26
51 52 5.064452 CGAGCAACTGAATAAAATCTCAGCT 59.936 40.000 0.00 0.00 42.39 4.24
52 53 6.192234 AGCAACTGAATAAAATCTCAGCTG 57.808 37.500 7.63 7.63 42.39 4.24
53 54 5.709164 AGCAACTGAATAAAATCTCAGCTGT 59.291 36.000 14.67 0.00 42.39 4.40
54 55 5.798934 GCAACTGAATAAAATCTCAGCTGTG 59.201 40.000 14.67 11.96 42.39 3.66
55 56 6.569226 GCAACTGAATAAAATCTCAGCTGTGT 60.569 38.462 14.67 0.00 42.39 3.72
56 57 7.365741 CAACTGAATAAAATCTCAGCTGTGTT 58.634 34.615 14.67 3.33 42.39 3.32
57 58 7.516198 ACTGAATAAAATCTCAGCTGTGTTT 57.484 32.000 14.67 9.86 42.39 2.83
58 59 7.945134 ACTGAATAAAATCTCAGCTGTGTTTT 58.055 30.769 14.67 19.27 42.39 2.43
59 60 8.078596 ACTGAATAAAATCTCAGCTGTGTTTTC 58.921 33.333 19.65 11.38 42.39 2.29
60 61 7.939782 TGAATAAAATCTCAGCTGTGTTTTCA 58.060 30.769 19.65 13.21 0.00 2.69
61 62 8.077991 TGAATAAAATCTCAGCTGTGTTTTCAG 58.922 33.333 19.65 7.46 38.35 3.02
62 63 5.841957 AAAATCTCAGCTGTGTTTTCAGT 57.158 34.783 19.65 7.06 37.70 3.41
63 64 5.841957 AAATCTCAGCTGTGTTTTCAGTT 57.158 34.783 14.67 0.00 37.70 3.16
64 65 5.429957 AATCTCAGCTGTGTTTTCAGTTC 57.570 39.130 14.67 0.00 37.70 3.01
65 66 3.872696 TCTCAGCTGTGTTTTCAGTTCA 58.127 40.909 14.67 0.00 37.70 3.18
66 67 3.623060 TCTCAGCTGTGTTTTCAGTTCAC 59.377 43.478 14.67 0.00 37.70 3.18
67 68 3.609853 TCAGCTGTGTTTTCAGTTCACT 58.390 40.909 14.67 0.00 37.70 3.41
68 69 3.623060 TCAGCTGTGTTTTCAGTTCACTC 59.377 43.478 14.67 0.00 37.70 3.51
69 70 3.374988 CAGCTGTGTTTTCAGTTCACTCA 59.625 43.478 5.25 0.00 37.70 3.41
70 71 3.624861 AGCTGTGTTTTCAGTTCACTCAG 59.375 43.478 0.00 0.00 37.70 3.35
71 72 3.790123 GCTGTGTTTTCAGTTCACTCAGC 60.790 47.826 9.15 9.15 45.50 4.26
72 73 3.342719 TGTGTTTTCAGTTCACTCAGCA 58.657 40.909 0.00 0.00 33.82 4.41
73 74 3.126858 TGTGTTTTCAGTTCACTCAGCAC 59.873 43.478 0.00 0.00 33.82 4.40
74 75 3.126858 GTGTTTTCAGTTCACTCAGCACA 59.873 43.478 0.00 0.00 0.00 4.57
75 76 3.374988 TGTTTTCAGTTCACTCAGCACAG 59.625 43.478 0.00 0.00 0.00 3.66
76 77 1.586422 TTCAGTTCACTCAGCACAGC 58.414 50.000 0.00 0.00 0.00 4.40
77 78 0.598419 TCAGTTCACTCAGCACAGCG 60.598 55.000 0.00 0.00 0.00 5.18
78 79 1.301244 AGTTCACTCAGCACAGCGG 60.301 57.895 0.00 0.00 0.00 5.52
79 80 2.031012 TTCACTCAGCACAGCGGG 59.969 61.111 0.00 0.00 0.00 6.13
80 81 2.807107 TTCACTCAGCACAGCGGGT 61.807 57.895 0.00 0.00 0.00 5.28
81 82 2.281070 CACTCAGCACAGCGGGTT 60.281 61.111 0.00 0.00 0.00 4.11
82 83 2.281070 ACTCAGCACAGCGGGTTG 60.281 61.111 0.00 0.00 0.00 3.77
83 84 2.031012 CTCAGCACAGCGGGTTGA 59.969 61.111 0.00 0.00 0.00 3.18
84 85 1.376424 CTCAGCACAGCGGGTTGAT 60.376 57.895 0.00 0.00 0.00 2.57
85 86 0.957395 CTCAGCACAGCGGGTTGATT 60.957 55.000 0.00 0.00 0.00 2.57
86 87 0.955428 TCAGCACAGCGGGTTGATTC 60.955 55.000 0.00 0.00 0.00 2.52
87 88 0.957395 CAGCACAGCGGGTTGATTCT 60.957 55.000 0.00 0.00 0.00 2.40
88 89 0.613260 AGCACAGCGGGTTGATTCTA 59.387 50.000 0.00 0.00 0.00 2.10
89 90 1.003118 AGCACAGCGGGTTGATTCTAA 59.997 47.619 0.00 0.00 0.00 2.10
90 91 2.017049 GCACAGCGGGTTGATTCTAAT 58.983 47.619 0.00 0.00 0.00 1.73
91 92 2.223340 GCACAGCGGGTTGATTCTAATG 60.223 50.000 0.00 0.00 0.00 1.90
92 93 3.270027 CACAGCGGGTTGATTCTAATGA 58.730 45.455 0.00 0.00 0.00 2.57
93 94 3.689161 CACAGCGGGTTGATTCTAATGAA 59.311 43.478 0.00 0.00 36.54 2.57
94 95 4.155826 CACAGCGGGTTGATTCTAATGAAA 59.844 41.667 0.00 0.00 35.63 2.69
95 96 4.396166 ACAGCGGGTTGATTCTAATGAAAG 59.604 41.667 0.00 0.00 35.63 2.62
96 97 3.947834 AGCGGGTTGATTCTAATGAAAGG 59.052 43.478 0.00 0.00 35.63 3.11
97 98 3.489229 GCGGGTTGATTCTAATGAAAGGC 60.489 47.826 0.00 0.00 35.63 4.35
98 99 3.694072 CGGGTTGATTCTAATGAAAGGCA 59.306 43.478 0.00 0.00 35.63 4.75
99 100 4.201950 CGGGTTGATTCTAATGAAAGGCAG 60.202 45.833 0.00 0.00 35.63 4.85
100 101 4.098501 GGGTTGATTCTAATGAAAGGCAGG 59.901 45.833 0.00 0.00 35.63 4.85
101 102 4.949856 GGTTGATTCTAATGAAAGGCAGGA 59.050 41.667 0.00 0.00 35.63 3.86
102 103 5.067023 GGTTGATTCTAATGAAAGGCAGGAG 59.933 44.000 0.00 0.00 35.63 3.69
103 104 4.785301 TGATTCTAATGAAAGGCAGGAGG 58.215 43.478 0.00 0.00 35.63 4.30
104 105 2.717639 TCTAATGAAAGGCAGGAGGC 57.282 50.000 0.00 0.00 43.74 4.70
112 113 2.034687 GGCAGGAGGCTCTTTGCA 59.965 61.111 30.76 0.00 45.15 4.08
113 114 1.604593 GGCAGGAGGCTCTTTGCAA 60.605 57.895 30.76 0.00 45.15 4.08
114 115 1.181098 GGCAGGAGGCTCTTTGCAAA 61.181 55.000 30.76 12.14 45.15 3.68
115 116 0.675633 GCAGGAGGCTCTTTGCAAAA 59.324 50.000 27.60 3.82 45.15 2.44
116 117 1.069049 GCAGGAGGCTCTTTGCAAAAA 59.931 47.619 27.60 0.00 45.15 1.94
117 118 2.747436 CAGGAGGCTCTTTGCAAAAAC 58.253 47.619 13.84 5.34 45.15 2.43
118 119 1.338020 AGGAGGCTCTTTGCAAAAACG 59.662 47.619 13.84 1.77 45.15 3.60
119 120 1.131771 GAGGCTCTTTGCAAAAACGC 58.868 50.000 13.84 14.51 45.15 4.84
120 121 0.594796 AGGCTCTTTGCAAAAACGCG 60.595 50.000 13.84 3.53 45.15 6.01
121 122 1.199126 GCTCTTTGCAAAAACGCGC 59.801 52.632 13.84 4.78 42.31 6.86
122 123 1.208642 GCTCTTTGCAAAAACGCGCT 61.209 50.000 13.84 0.00 42.31 5.92
123 124 0.772341 CTCTTTGCAAAAACGCGCTC 59.228 50.000 13.84 0.00 33.35 5.03
124 125 0.380378 TCTTTGCAAAAACGCGCTCT 59.620 45.000 13.84 0.00 33.35 4.09
125 126 0.499761 CTTTGCAAAAACGCGCTCTG 59.500 50.000 13.84 0.00 33.35 3.35
126 127 0.099613 TTTGCAAAAACGCGCTCTGA 59.900 45.000 10.02 0.00 33.35 3.27
127 128 0.591236 TTGCAAAAACGCGCTCTGAC 60.591 50.000 5.73 0.00 33.35 3.51
128 129 1.725973 GCAAAAACGCGCTCTGACC 60.726 57.895 5.73 0.00 0.00 4.02
129 130 1.438710 CAAAAACGCGCTCTGACCG 60.439 57.895 5.73 0.00 0.00 4.79
130 131 2.604174 AAAAACGCGCTCTGACCGG 61.604 57.895 5.73 0.00 0.00 5.28
152 153 3.692406 GGCCCGACGAGTCCACTT 61.692 66.667 0.00 0.00 0.00 3.16
153 154 2.432628 GCCCGACGAGTCCACTTG 60.433 66.667 0.00 0.00 0.00 3.16
154 155 3.048602 CCCGACGAGTCCACTTGT 58.951 61.111 0.00 0.00 43.04 3.16
160 161 2.279935 ACGAGTCCACTTGTCTCTCT 57.720 50.000 0.00 0.00 35.78 3.10
161 162 1.883275 ACGAGTCCACTTGTCTCTCTG 59.117 52.381 0.00 0.00 35.78 3.35
162 163 1.883275 CGAGTCCACTTGTCTCTCTGT 59.117 52.381 0.00 0.00 0.00 3.41
163 164 2.351253 CGAGTCCACTTGTCTCTCTGTG 60.351 54.545 0.00 0.00 0.00 3.66
164 165 2.887783 GAGTCCACTTGTCTCTCTGTGA 59.112 50.000 0.00 0.00 32.72 3.58
165 166 3.505386 AGTCCACTTGTCTCTCTGTGAT 58.495 45.455 0.00 0.00 32.72 3.06
166 167 3.900601 AGTCCACTTGTCTCTCTGTGATT 59.099 43.478 0.00 0.00 32.72 2.57
167 168 3.993081 GTCCACTTGTCTCTCTGTGATTG 59.007 47.826 0.00 0.00 32.72 2.67
168 169 3.007290 TCCACTTGTCTCTCTGTGATTGG 59.993 47.826 0.00 0.00 32.72 3.16
169 170 3.244353 CCACTTGTCTCTCTGTGATTGGT 60.244 47.826 0.00 0.00 32.72 3.67
170 171 3.993081 CACTTGTCTCTCTGTGATTGGTC 59.007 47.826 0.00 0.00 32.72 4.02
171 172 3.900601 ACTTGTCTCTCTGTGATTGGTCT 59.099 43.478 0.00 0.00 0.00 3.85
172 173 5.047731 CACTTGTCTCTCTGTGATTGGTCTA 60.048 44.000 0.00 0.00 32.72 2.59
173 174 5.184864 ACTTGTCTCTCTGTGATTGGTCTAG 59.815 44.000 0.00 0.00 0.00 2.43
174 175 4.019858 TGTCTCTCTGTGATTGGTCTAGG 58.980 47.826 0.00 0.00 0.00 3.02
175 176 4.263949 TGTCTCTCTGTGATTGGTCTAGGA 60.264 45.833 0.00 0.00 0.00 2.94
176 177 4.097286 GTCTCTCTGTGATTGGTCTAGGAC 59.903 50.000 0.00 0.00 0.00 3.85
188 189 1.798813 GTCTAGGACCAAAGTTGCACG 59.201 52.381 0.00 0.00 0.00 5.34
189 190 1.414919 TCTAGGACCAAAGTTGCACGT 59.585 47.619 0.00 0.00 0.00 4.49
190 191 2.158871 TCTAGGACCAAAGTTGCACGTT 60.159 45.455 0.00 0.00 0.00 3.99
191 192 0.738389 AGGACCAAAGTTGCACGTTG 59.262 50.000 0.00 0.00 37.33 4.10
202 203 4.707988 CACGTTGGGTGCAAGTTG 57.292 55.556 0.00 0.00 40.33 3.16
203 204 1.806568 CACGTTGGGTGCAAGTTGT 59.193 52.632 4.48 0.00 40.33 3.32
204 205 0.525242 CACGTTGGGTGCAAGTTGTG 60.525 55.000 4.48 0.00 40.33 3.33
205 206 1.065600 CGTTGGGTGCAAGTTGTGG 59.934 57.895 4.48 0.00 0.00 4.17
206 207 1.441311 GTTGGGTGCAAGTTGTGGG 59.559 57.895 4.48 0.00 0.00 4.61
207 208 1.040339 GTTGGGTGCAAGTTGTGGGA 61.040 55.000 4.48 0.00 0.00 4.37
208 209 1.040339 TTGGGTGCAAGTTGTGGGAC 61.040 55.000 4.48 0.00 0.00 4.46
209 210 1.152756 GGGTGCAAGTTGTGGGACT 60.153 57.895 4.48 0.00 0.00 3.85
210 211 1.455383 GGGTGCAAGTTGTGGGACTG 61.455 60.000 4.48 0.00 0.00 3.51
211 212 1.455383 GGTGCAAGTTGTGGGACTGG 61.455 60.000 4.48 0.00 0.00 4.00
212 213 1.152777 TGCAAGTTGTGGGACTGGG 60.153 57.895 4.48 0.00 0.00 4.45
213 214 1.152756 GCAAGTTGTGGGACTGGGT 60.153 57.895 4.48 0.00 0.00 4.51
214 215 0.109723 GCAAGTTGTGGGACTGGGTA 59.890 55.000 4.48 0.00 0.00 3.69
215 216 1.477923 GCAAGTTGTGGGACTGGGTAA 60.478 52.381 4.48 0.00 0.00 2.85
216 217 2.504367 CAAGTTGTGGGACTGGGTAAG 58.496 52.381 0.00 0.00 0.00 2.34
217 218 1.064825 AGTTGTGGGACTGGGTAAGG 58.935 55.000 0.00 0.00 0.00 2.69
218 219 0.769247 GTTGTGGGACTGGGTAAGGT 59.231 55.000 0.00 0.00 0.00 3.50
219 220 1.061546 TTGTGGGACTGGGTAAGGTC 58.938 55.000 0.00 0.00 0.00 3.85
220 221 0.104882 TGTGGGACTGGGTAAGGTCA 60.105 55.000 0.00 0.00 34.49 4.02
221 222 1.286248 GTGGGACTGGGTAAGGTCAT 58.714 55.000 0.00 0.00 34.49 3.06
222 223 1.633945 GTGGGACTGGGTAAGGTCATT 59.366 52.381 0.00 0.00 34.49 2.57
223 224 2.041216 GTGGGACTGGGTAAGGTCATTT 59.959 50.000 0.00 0.00 34.49 2.32
224 225 2.719705 TGGGACTGGGTAAGGTCATTTT 59.280 45.455 0.00 0.00 34.49 1.82
225 226 3.089284 GGGACTGGGTAAGGTCATTTTG 58.911 50.000 0.00 0.00 34.49 2.44
226 227 2.492088 GGACTGGGTAAGGTCATTTTGC 59.508 50.000 0.00 0.00 34.49 3.68
227 228 3.153919 GACTGGGTAAGGTCATTTTGCA 58.846 45.455 0.00 0.00 33.19 4.08
228 229 3.571590 ACTGGGTAAGGTCATTTTGCAA 58.428 40.909 0.00 0.00 0.00 4.08
229 230 3.573967 ACTGGGTAAGGTCATTTTGCAAG 59.426 43.478 0.00 0.00 0.00 4.01
230 231 3.571590 TGGGTAAGGTCATTTTGCAAGT 58.428 40.909 0.00 0.00 0.00 3.16
231 232 3.964031 TGGGTAAGGTCATTTTGCAAGTT 59.036 39.130 0.00 0.00 0.00 2.66
232 233 5.141182 TGGGTAAGGTCATTTTGCAAGTTA 58.859 37.500 0.00 0.00 0.00 2.24
233 234 5.777732 TGGGTAAGGTCATTTTGCAAGTTAT 59.222 36.000 0.00 0.00 0.00 1.89
234 235 6.948886 TGGGTAAGGTCATTTTGCAAGTTATA 59.051 34.615 0.00 0.00 0.00 0.98
235 236 7.122055 TGGGTAAGGTCATTTTGCAAGTTATAG 59.878 37.037 0.00 0.00 0.00 1.31
236 237 7.416326 GGGTAAGGTCATTTTGCAAGTTATAGG 60.416 40.741 0.00 0.00 0.00 2.57
237 238 7.338449 GGTAAGGTCATTTTGCAAGTTATAGGA 59.662 37.037 0.00 0.00 0.00 2.94
238 239 6.759497 AGGTCATTTTGCAAGTTATAGGAC 57.241 37.500 0.00 2.52 0.00 3.85
239 240 5.652452 AGGTCATTTTGCAAGTTATAGGACC 59.348 40.000 17.38 17.38 40.96 4.46
240 241 5.417580 GGTCATTTTGCAAGTTATAGGACCA 59.582 40.000 18.93 0.00 40.50 4.02
241 242 6.071616 GGTCATTTTGCAAGTTATAGGACCAA 60.072 38.462 18.93 2.23 40.50 3.67
242 243 7.375053 GTCATTTTGCAAGTTATAGGACCAAA 58.625 34.615 0.00 0.00 0.00 3.28
243 244 7.328493 GTCATTTTGCAAGTTATAGGACCAAAC 59.672 37.037 0.00 0.00 0.00 2.93
244 245 5.715434 TTTGCAAGTTATAGGACCAAACC 57.285 39.130 0.00 0.00 0.00 3.27
245 246 4.374689 TGCAAGTTATAGGACCAAACCA 57.625 40.909 0.00 0.00 0.00 3.67
246 247 4.929479 TGCAAGTTATAGGACCAAACCAT 58.071 39.130 0.00 0.00 0.00 3.55
247 248 4.947388 TGCAAGTTATAGGACCAAACCATC 59.053 41.667 0.00 0.00 0.00 3.51
248 249 4.947388 GCAAGTTATAGGACCAAACCATCA 59.053 41.667 0.00 0.00 0.00 3.07
249 250 5.594317 GCAAGTTATAGGACCAAACCATCAT 59.406 40.000 0.00 0.00 0.00 2.45
250 251 6.770785 GCAAGTTATAGGACCAAACCATCATA 59.229 38.462 0.00 0.00 0.00 2.15
251 252 7.448469 GCAAGTTATAGGACCAAACCATCATAT 59.552 37.037 0.00 0.00 0.00 1.78
252 253 9.354673 CAAGTTATAGGACCAAACCATCATATT 57.645 33.333 0.00 0.00 0.00 1.28
253 254 8.924511 AGTTATAGGACCAAACCATCATATTG 57.075 34.615 0.00 0.00 0.00 1.90
254 255 8.502738 AGTTATAGGACCAAACCATCATATTGT 58.497 33.333 0.00 0.00 0.00 2.71
255 256 8.567948 GTTATAGGACCAAACCATCATATTGTG 58.432 37.037 0.00 0.00 0.00 3.33
256 257 5.191727 AGGACCAAACCATCATATTGTGA 57.808 39.130 0.00 0.00 42.06 3.58
257 258 5.195940 AGGACCAAACCATCATATTGTGAG 58.804 41.667 0.00 0.00 40.92 3.51
258 259 4.202050 GGACCAAACCATCATATTGTGAGC 60.202 45.833 0.00 0.00 40.92 4.26
259 260 4.343231 ACCAAACCATCATATTGTGAGCA 58.657 39.130 0.00 0.00 40.92 4.26
260 261 4.771577 ACCAAACCATCATATTGTGAGCAA 59.228 37.500 0.00 0.00 40.92 3.91
261 262 5.105635 ACCAAACCATCATATTGTGAGCAAG 60.106 40.000 0.00 0.00 40.92 4.01
262 263 5.105635 CCAAACCATCATATTGTGAGCAAGT 60.106 40.000 0.00 0.00 40.92 3.16
263 264 6.392354 CAAACCATCATATTGTGAGCAAGTT 58.608 36.000 0.00 0.00 40.92 2.66
264 265 5.824904 ACCATCATATTGTGAGCAAGTTC 57.175 39.130 0.00 0.00 40.92 3.01
265 266 5.503927 ACCATCATATTGTGAGCAAGTTCT 58.496 37.500 0.00 0.00 40.92 3.01
266 267 6.653020 ACCATCATATTGTGAGCAAGTTCTA 58.347 36.000 0.00 0.00 40.92 2.10
267 268 6.765036 ACCATCATATTGTGAGCAAGTTCTAG 59.235 38.462 0.00 0.00 40.92 2.43
268 269 6.204301 CCATCATATTGTGAGCAAGTTCTAGG 59.796 42.308 0.00 0.00 40.92 3.02
269 270 6.544928 TCATATTGTGAGCAAGTTCTAGGA 57.455 37.500 0.00 0.00 38.10 2.94
270 271 6.341316 TCATATTGTGAGCAAGTTCTAGGAC 58.659 40.000 0.00 0.00 38.10 3.85
271 272 3.402628 TTGTGAGCAAGTTCTAGGACC 57.597 47.619 0.00 0.00 0.00 4.46
272 273 1.623811 TGTGAGCAAGTTCTAGGACCC 59.376 52.381 0.00 0.00 0.00 4.46
273 274 1.066071 GTGAGCAAGTTCTAGGACCCC 60.066 57.143 0.00 0.00 0.00 4.95
274 275 0.542333 GAGCAAGTTCTAGGACCCCC 59.458 60.000 0.00 0.00 0.00 5.40
275 276 0.178873 AGCAAGTTCTAGGACCCCCA 60.179 55.000 0.00 0.00 33.88 4.96
276 277 0.696501 GCAAGTTCTAGGACCCCCAA 59.303 55.000 0.00 0.00 33.88 4.12
277 278 1.285078 GCAAGTTCTAGGACCCCCAAT 59.715 52.381 0.00 0.00 33.88 3.16
278 279 2.945890 GCAAGTTCTAGGACCCCCAATG 60.946 54.545 0.00 0.00 33.88 2.82
279 280 0.919710 AGTTCTAGGACCCCCAATGC 59.080 55.000 0.00 0.00 33.88 3.56
280 281 0.919710 GTTCTAGGACCCCCAATGCT 59.080 55.000 0.00 0.00 33.88 3.79
281 282 1.285078 GTTCTAGGACCCCCAATGCTT 59.715 52.381 0.00 0.00 33.88 3.91
282 283 1.681229 TCTAGGACCCCCAATGCTTT 58.319 50.000 0.00 0.00 33.88 3.51
283 284 2.000048 TCTAGGACCCCCAATGCTTTT 59.000 47.619 0.00 0.00 33.88 2.27
284 285 3.194620 TCTAGGACCCCCAATGCTTTTA 58.805 45.455 0.00 0.00 33.88 1.52
285 286 3.594232 TCTAGGACCCCCAATGCTTTTAA 59.406 43.478 0.00 0.00 33.88 1.52
286 287 2.536066 AGGACCCCCAATGCTTTTAAC 58.464 47.619 0.00 0.00 33.88 2.01
287 288 2.111792 AGGACCCCCAATGCTTTTAACT 59.888 45.455 0.00 0.00 33.88 2.24
288 289 2.496070 GGACCCCCAATGCTTTTAACTC 59.504 50.000 0.00 0.00 0.00 3.01
289 290 3.431415 GACCCCCAATGCTTTTAACTCT 58.569 45.455 0.00 0.00 0.00 3.24
290 291 3.832490 GACCCCCAATGCTTTTAACTCTT 59.168 43.478 0.00 0.00 0.00 2.85
291 292 4.231273 ACCCCCAATGCTTTTAACTCTTT 58.769 39.130 0.00 0.00 0.00 2.52
292 293 4.658435 ACCCCCAATGCTTTTAACTCTTTT 59.342 37.500 0.00 0.00 0.00 2.27
363 364 2.937433 GCTACACAGCCTTCCTTCCTTC 60.937 54.545 0.00 0.00 42.37 3.46
365 366 0.695347 CACAGCCTTCCTTCCTTCCT 59.305 55.000 0.00 0.00 0.00 3.36
366 367 1.074566 CACAGCCTTCCTTCCTTCCTT 59.925 52.381 0.00 0.00 0.00 3.36
367 368 1.352687 ACAGCCTTCCTTCCTTCCTTC 59.647 52.381 0.00 0.00 0.00 3.46
368 369 0.995803 AGCCTTCCTTCCTTCCTTCC 59.004 55.000 0.00 0.00 0.00 3.46
369 370 0.995803 GCCTTCCTTCCTTCCTTCCT 59.004 55.000 0.00 0.00 0.00 3.36
461 464 5.637810 CCTTGCGAAAGATACTACAAACTCA 59.362 40.000 4.13 0.00 0.00 3.41
647 650 3.007398 AGCTTTCTCTCACCTCAAATCGT 59.993 43.478 0.00 0.00 0.00 3.73
691 695 2.094757 ATCACCCGCGTTGACACAGA 62.095 55.000 4.92 0.00 0.00 3.41
696 700 0.179250 CCGCGTTGACACAGAAATCG 60.179 55.000 4.92 0.00 0.00 3.34
700 704 1.201704 CGTTGACACAGAAATCGCGAG 60.202 52.381 16.66 2.26 0.00 5.03
786 790 5.182190 ACGTGAGATACAGATATACAGCAGG 59.818 44.000 0.00 0.00 0.00 4.85
817 821 0.105039 GTCCACGAATAGCCCTCCTG 59.895 60.000 0.00 0.00 0.00 3.86
870 874 2.700407 ATACGGGCCTCCTCTCCTCG 62.700 65.000 0.84 0.00 0.00 4.63
878 882 2.245438 CTCCTCTCCTCGCCAAACCC 62.245 65.000 0.00 0.00 0.00 4.11
939 943 0.037326 AAACAGAGATCGCGCTTCCA 60.037 50.000 5.56 0.00 0.00 3.53
1192 1196 0.032540 CGACATCGAGGCCATGATCA 59.967 55.000 5.01 0.00 43.02 2.92
1739 1744 6.073167 GGAAACTTAAACAAGTGCTCTACTCC 60.073 42.308 0.00 0.00 39.18 3.85
1754 1759 1.898863 ACTCCCCTGCAGGTCATAAT 58.101 50.000 30.63 8.73 0.00 1.28
1756 1761 2.706190 ACTCCCCTGCAGGTCATAATAC 59.294 50.000 30.63 0.00 0.00 1.89
1757 1762 2.975489 CTCCCCTGCAGGTCATAATACT 59.025 50.000 30.63 0.00 0.00 2.12
1758 1763 2.972713 TCCCCTGCAGGTCATAATACTC 59.027 50.000 30.63 0.00 0.00 2.59
1759 1764 2.039084 CCCCTGCAGGTCATAATACTCC 59.961 54.545 30.63 0.00 0.00 3.85
1760 1765 2.975489 CCCTGCAGGTCATAATACTCCT 59.025 50.000 30.63 0.00 0.00 3.69
1763 1768 4.101585 CCTGCAGGTCATAATACTCCTTCA 59.898 45.833 25.53 0.00 0.00 3.02
1764 1769 5.221803 CCTGCAGGTCATAATACTCCTTCAT 60.222 44.000 25.53 0.00 0.00 2.57
1765 1770 6.252599 TGCAGGTCATAATACTCCTTCATT 57.747 37.500 0.00 0.00 0.00 2.57
1767 1772 6.100279 TGCAGGTCATAATACTCCTTCATTCT 59.900 38.462 0.00 0.00 0.00 2.40
1768 1773 7.290014 TGCAGGTCATAATACTCCTTCATTCTA 59.710 37.037 0.00 0.00 0.00 2.10
1769 1774 8.150945 GCAGGTCATAATACTCCTTCATTCTAA 58.849 37.037 0.00 0.00 0.00 2.10
1778 1783 8.894768 ATACTCCTTCATTCTAAATGTAGTGC 57.105 34.615 5.83 0.00 0.00 4.40
1779 1784 5.812642 ACTCCTTCATTCTAAATGTAGTGCG 59.187 40.000 5.83 0.00 0.00 5.34
1780 1785 5.730550 TCCTTCATTCTAAATGTAGTGCGT 58.269 37.500 5.83 0.00 0.00 5.24
1781 1786 5.810587 TCCTTCATTCTAAATGTAGTGCGTC 59.189 40.000 5.83 0.00 0.00 5.19
1782 1787 5.006746 CCTTCATTCTAAATGTAGTGCGTCC 59.993 44.000 5.83 0.00 0.00 4.79
1784 1789 5.670485 TCATTCTAAATGTAGTGCGTCCAT 58.330 37.500 0.04 0.00 0.00 3.41
1786 1791 4.465632 TCTAAATGTAGTGCGTCCATGT 57.534 40.909 0.00 0.00 0.00 3.21
1787 1792 4.827692 TCTAAATGTAGTGCGTCCATGTT 58.172 39.130 0.00 0.00 0.00 2.71
1788 1793 5.242434 TCTAAATGTAGTGCGTCCATGTTT 58.758 37.500 0.00 0.00 0.00 2.83
1789 1794 4.846779 AAATGTAGTGCGTCCATGTTTT 57.153 36.364 0.00 0.00 0.00 2.43
1805 3514 9.065871 GTCCATGTTTTTCGAGATCTAAATTTG 57.934 33.333 0.00 0.00 0.00 2.32
1807 3516 9.793252 CCATGTTTTTCGAGATCTAAATTTGAT 57.207 29.630 0.00 2.08 0.00 2.57
1860 3569 5.578776 GCGGTAGCAAAAATTATAGCACTT 58.421 37.500 0.00 0.00 44.35 3.16
1916 3625 3.377172 GCGGGTGCACTACATTTAGAAAT 59.623 43.478 17.98 0.00 42.15 2.17
1917 3626 4.573201 GCGGGTGCACTACATTTAGAAATA 59.427 41.667 17.98 0.00 42.15 1.40
1921 3630 7.272978 GGGTGCACTACATTTAGAAATAGAGA 58.727 38.462 17.98 0.00 0.00 3.10
1938 3647 8.704849 AAATAGAGAGAGTATGTCACTAGCAT 57.295 34.615 0.00 0.00 35.27 3.79
1945 3654 1.950828 ATGTCACTAGCATGCAGAGC 58.049 50.000 21.98 5.83 0.00 4.09
1946 3655 0.459063 TGTCACTAGCATGCAGAGCG 60.459 55.000 21.98 10.70 37.01 5.03
1949 3658 3.336318 CTAGCATGCAGAGCGCCG 61.336 66.667 21.98 0.00 41.33 6.46
1950 3659 4.897357 TAGCATGCAGAGCGCCGG 62.897 66.667 21.98 0.00 41.33 6.13
2077 4128 4.141574 TGGTTACAAACACTTAGCCACTCT 60.142 41.667 0.00 0.00 0.00 3.24
2105 4188 1.448922 CTCCGCTACTCCCTCCTTCG 61.449 65.000 0.00 0.00 0.00 3.79
2106 4189 2.413765 CGCTACTCCCTCCTTCGC 59.586 66.667 0.00 0.00 0.00 4.70
2114 4197 2.721167 CCCTCCTTCGCCGTCATCA 61.721 63.158 0.00 0.00 0.00 3.07
2118 4201 1.065764 CCTTCGCCGTCATCATCGA 59.934 57.895 0.00 0.00 0.00 3.59
2120 4203 1.277326 CTTCGCCGTCATCATCGAAA 58.723 50.000 0.00 0.00 39.90 3.46
2138 4221 0.036294 AAGTCGTCTAGCAAAGCCCC 60.036 55.000 0.00 0.00 0.00 5.80
2142 4225 3.387091 TCTAGCAAAGCCCCGCGA 61.387 61.111 8.23 0.00 0.00 5.87
2143 4226 3.195698 CTAGCAAAGCCCCGCGAC 61.196 66.667 8.23 0.00 0.00 5.19
2156 4239 3.353836 GCGACGCACAATGGTGGT 61.354 61.111 16.42 0.00 45.38 4.16
2163 4246 1.317613 GCACAATGGTGGTGAGAACA 58.682 50.000 1.53 0.00 45.38 3.18
2199 4282 1.153349 GTGCCTCGGATCCAAGGTC 60.153 63.158 20.26 12.63 34.96 3.85
2215 4298 2.363795 TCCCGGAGTCGCCATCTT 60.364 61.111 0.73 0.00 35.94 2.40
2220 4303 1.676014 CCGGAGTCGCCATCTTCTTTT 60.676 52.381 0.00 0.00 35.94 2.27
2221 4304 1.661112 CGGAGTCGCCATCTTCTTTTC 59.339 52.381 0.00 0.00 35.94 2.29
2222 4305 1.661112 GGAGTCGCCATCTTCTTTTCG 59.339 52.381 0.00 0.00 36.34 3.46
2223 4306 1.661112 GAGTCGCCATCTTCTTTTCGG 59.339 52.381 0.00 0.00 0.00 4.30
2224 4307 1.002087 AGTCGCCATCTTCTTTTCGGT 59.998 47.619 0.00 0.00 0.00 4.69
2225 4308 1.393883 GTCGCCATCTTCTTTTCGGTC 59.606 52.381 0.00 0.00 0.00 4.79
2226 4309 0.370273 CGCCATCTTCTTTTCGGTCG 59.630 55.000 0.00 0.00 0.00 4.79
2227 4310 0.727398 GCCATCTTCTTTTCGGTCGG 59.273 55.000 0.00 0.00 0.00 4.79
2228 4311 0.727398 CCATCTTCTTTTCGGTCGGC 59.273 55.000 0.00 0.00 0.00 5.54
2229 4312 0.370273 CATCTTCTTTTCGGTCGGCG 59.630 55.000 0.00 0.00 0.00 6.46
2230 4313 0.245539 ATCTTCTTTTCGGTCGGCGA 59.754 50.000 4.99 4.99 0.00 5.54
2231 4314 0.388134 TCTTCTTTTCGGTCGGCGAG 60.388 55.000 11.20 0.00 0.00 5.03
2232 4315 0.666577 CTTCTTTTCGGTCGGCGAGT 60.667 55.000 11.20 0.00 0.00 4.18
2233 4316 0.942410 TTCTTTTCGGTCGGCGAGTG 60.942 55.000 11.20 5.80 0.00 3.51
2234 4317 3.011760 CTTTTCGGTCGGCGAGTGC 62.012 63.158 11.20 0.00 41.71 4.40
2235 4318 3.509137 TTTTCGGTCGGCGAGTGCT 62.509 57.895 11.20 0.00 42.25 4.40
2243 4326 4.065110 GGCGAGTGCTGACCTTTT 57.935 55.556 0.00 0.00 42.25 2.27
2350 4433 3.194542 ACTGACTGATCTACCTTGCTCAC 59.805 47.826 0.00 0.00 0.00 3.51
2371 4454 1.046472 ATCCGGTTATGTCGGCTCCA 61.046 55.000 0.00 0.00 46.43 3.86
2375 4458 0.468226 GGTTATGTCGGCTCCATGGA 59.532 55.000 15.27 15.27 0.00 3.41
2381 4464 4.873129 CGGCTCCATGGACGACGG 62.873 72.222 23.89 11.50 0.00 4.79
2398 4481 1.461461 GGGTCTGGGCAGGGCTATA 60.461 63.158 0.00 0.00 0.00 1.31
2401 4484 0.615850 GTCTGGGCAGGGCTATATCC 59.384 60.000 0.00 0.00 0.00 2.59
2402 4485 0.904865 TCTGGGCAGGGCTATATCCG 60.905 60.000 0.00 0.00 0.00 4.18
2450 4534 1.280982 CATCTCGATGTTGGTCGGTG 58.719 55.000 0.00 0.00 41.74 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 1.062525 GATCGATTGCGGTGTTGCC 59.937 57.895 0.00 0.00 38.28 4.52
10 11 1.296867 CGATCGATTGCGGTGTTGC 60.297 57.895 10.26 0.00 38.28 4.17
11 12 0.298707 CTCGATCGATTGCGGTGTTG 59.701 55.000 19.78 0.00 38.28 3.33
12 13 1.421410 GCTCGATCGATTGCGGTGTT 61.421 55.000 19.78 0.00 38.28 3.32
13 14 1.878522 GCTCGATCGATTGCGGTGT 60.879 57.895 19.78 0.00 38.28 4.16
14 15 1.420641 TTGCTCGATCGATTGCGGTG 61.421 55.000 19.78 6.07 38.28 4.94
15 16 1.153647 TTGCTCGATCGATTGCGGT 60.154 52.632 19.78 0.00 38.28 5.68
16 17 1.148157 AGTTGCTCGATCGATTGCGG 61.148 55.000 19.78 7.64 38.28 5.69
17 18 0.043566 CAGTTGCTCGATCGATTGCG 60.044 55.000 19.78 8.05 39.35 4.85
18 19 1.280982 TCAGTTGCTCGATCGATTGC 58.719 50.000 19.78 19.49 0.00 3.56
19 20 5.641777 TTATTCAGTTGCTCGATCGATTG 57.358 39.130 19.78 9.24 0.00 2.67
20 21 6.662414 TTTTATTCAGTTGCTCGATCGATT 57.338 33.333 19.78 0.00 0.00 3.34
21 22 6.703607 AGATTTTATTCAGTTGCTCGATCGAT 59.296 34.615 19.78 0.00 0.00 3.59
22 23 6.042777 AGATTTTATTCAGTTGCTCGATCGA 58.957 36.000 18.32 18.32 0.00 3.59
23 24 6.019559 TGAGATTTTATTCAGTTGCTCGATCG 60.020 38.462 9.36 9.36 0.00 3.69
24 25 7.239166 TGAGATTTTATTCAGTTGCTCGATC 57.761 36.000 0.00 0.00 0.00 3.69
25 26 6.238320 GCTGAGATTTTATTCAGTTGCTCGAT 60.238 38.462 3.74 0.00 42.17 3.59
26 27 5.063944 GCTGAGATTTTATTCAGTTGCTCGA 59.936 40.000 3.74 0.00 42.17 4.04
27 28 5.064452 AGCTGAGATTTTATTCAGTTGCTCG 59.936 40.000 3.74 0.00 42.17 5.03
28 29 6.256686 CAGCTGAGATTTTATTCAGTTGCTC 58.743 40.000 8.42 0.00 42.75 4.26
29 30 6.192234 CAGCTGAGATTTTATTCAGTTGCT 57.808 37.500 8.42 0.00 42.75 3.91
32 33 7.516198 AACACAGCTGAGATTTTATTCAGTT 57.484 32.000 23.35 0.00 42.17 3.16
33 34 7.516198 AAACACAGCTGAGATTTTATTCAGT 57.484 32.000 23.35 0.00 42.17 3.41
34 35 8.077991 TGAAAACACAGCTGAGATTTTATTCAG 58.922 33.333 23.35 0.00 42.87 3.02
35 36 7.939782 TGAAAACACAGCTGAGATTTTATTCA 58.060 30.769 23.35 10.98 0.00 2.57
36 37 8.078596 ACTGAAAACACAGCTGAGATTTTATTC 58.921 33.333 23.35 8.49 41.06 1.75
37 38 7.945134 ACTGAAAACACAGCTGAGATTTTATT 58.055 30.769 23.35 8.09 41.06 1.40
38 39 7.516198 ACTGAAAACACAGCTGAGATTTTAT 57.484 32.000 23.35 6.68 41.06 1.40
39 40 6.942532 ACTGAAAACACAGCTGAGATTTTA 57.057 33.333 23.35 15.06 41.06 1.52
40 41 5.841957 ACTGAAAACACAGCTGAGATTTT 57.158 34.783 23.35 21.06 41.06 1.82
41 42 5.357878 TGAACTGAAAACACAGCTGAGATTT 59.642 36.000 23.35 19.59 41.06 2.17
42 43 4.883585 TGAACTGAAAACACAGCTGAGATT 59.116 37.500 23.35 11.14 41.06 2.40
43 44 4.274459 GTGAACTGAAAACACAGCTGAGAT 59.726 41.667 23.35 3.94 41.06 2.75
44 45 3.623060 GTGAACTGAAAACACAGCTGAGA 59.377 43.478 23.35 0.00 41.06 3.27
45 46 3.624861 AGTGAACTGAAAACACAGCTGAG 59.375 43.478 23.35 16.23 41.06 3.35
46 47 3.609853 AGTGAACTGAAAACACAGCTGA 58.390 40.909 23.35 0.00 41.06 4.26
47 48 3.374988 TGAGTGAACTGAAAACACAGCTG 59.625 43.478 13.48 13.48 41.06 4.24
48 49 3.609853 TGAGTGAACTGAAAACACAGCT 58.390 40.909 0.00 0.00 41.06 4.24
49 50 3.790123 GCTGAGTGAACTGAAAACACAGC 60.790 47.826 8.32 8.32 46.16 4.40
50 51 3.374988 TGCTGAGTGAACTGAAAACACAG 59.625 43.478 0.00 0.00 42.78 3.66
51 52 3.126858 GTGCTGAGTGAACTGAAAACACA 59.873 43.478 0.00 0.00 37.05 3.72
52 53 3.126858 TGTGCTGAGTGAACTGAAAACAC 59.873 43.478 0.00 0.00 35.15 3.32
53 54 3.342719 TGTGCTGAGTGAACTGAAAACA 58.657 40.909 0.00 0.00 0.00 2.83
54 55 3.790123 GCTGTGCTGAGTGAACTGAAAAC 60.790 47.826 0.00 0.00 0.00 2.43
55 56 2.355756 GCTGTGCTGAGTGAACTGAAAA 59.644 45.455 0.00 0.00 0.00 2.29
56 57 1.942657 GCTGTGCTGAGTGAACTGAAA 59.057 47.619 0.00 0.00 0.00 2.69
57 58 1.586422 GCTGTGCTGAGTGAACTGAA 58.414 50.000 0.00 0.00 0.00 3.02
58 59 0.598419 CGCTGTGCTGAGTGAACTGA 60.598 55.000 0.00 0.00 0.00 3.41
59 60 1.563435 CCGCTGTGCTGAGTGAACTG 61.563 60.000 0.00 0.00 0.00 3.16
60 61 1.301244 CCGCTGTGCTGAGTGAACT 60.301 57.895 0.00 0.00 0.00 3.01
61 62 2.320587 CCCGCTGTGCTGAGTGAAC 61.321 63.158 0.00 0.00 0.00 3.18
62 63 2.031012 CCCGCTGTGCTGAGTGAA 59.969 61.111 0.00 0.00 0.00 3.18
63 64 2.807107 AACCCGCTGTGCTGAGTGA 61.807 57.895 0.00 0.00 0.00 3.41
64 65 2.281070 AACCCGCTGTGCTGAGTG 60.281 61.111 0.00 0.00 0.00 3.51
65 66 2.116983 ATCAACCCGCTGTGCTGAGT 62.117 55.000 0.00 0.00 0.00 3.41
66 67 0.957395 AATCAACCCGCTGTGCTGAG 60.957 55.000 0.00 0.00 0.00 3.35
67 68 0.955428 GAATCAACCCGCTGTGCTGA 60.955 55.000 0.00 0.00 0.00 4.26
68 69 0.957395 AGAATCAACCCGCTGTGCTG 60.957 55.000 0.00 0.00 0.00 4.41
69 70 0.613260 TAGAATCAACCCGCTGTGCT 59.387 50.000 0.00 0.00 0.00 4.40
70 71 1.448985 TTAGAATCAACCCGCTGTGC 58.551 50.000 0.00 0.00 0.00 4.57
71 72 3.270027 TCATTAGAATCAACCCGCTGTG 58.730 45.455 0.00 0.00 0.00 3.66
72 73 3.627395 TCATTAGAATCAACCCGCTGT 57.373 42.857 0.00 0.00 0.00 4.40
73 74 4.201950 CCTTTCATTAGAATCAACCCGCTG 60.202 45.833 0.00 0.00 32.89 5.18
74 75 3.947834 CCTTTCATTAGAATCAACCCGCT 59.052 43.478 0.00 0.00 32.89 5.52
75 76 3.489229 GCCTTTCATTAGAATCAACCCGC 60.489 47.826 0.00 0.00 32.89 6.13
76 77 3.694072 TGCCTTTCATTAGAATCAACCCG 59.306 43.478 0.00 0.00 32.89 5.28
77 78 4.098501 CCTGCCTTTCATTAGAATCAACCC 59.901 45.833 0.00 0.00 32.89 4.11
78 79 4.949856 TCCTGCCTTTCATTAGAATCAACC 59.050 41.667 0.00 0.00 32.89 3.77
79 80 5.067023 CCTCCTGCCTTTCATTAGAATCAAC 59.933 44.000 0.00 0.00 32.89 3.18
80 81 5.195940 CCTCCTGCCTTTCATTAGAATCAA 58.804 41.667 0.00 0.00 32.89 2.57
81 82 4.785301 CCTCCTGCCTTTCATTAGAATCA 58.215 43.478 0.00 0.00 32.89 2.57
82 83 3.567585 GCCTCCTGCCTTTCATTAGAATC 59.432 47.826 0.00 0.00 32.89 2.52
83 84 3.203934 AGCCTCCTGCCTTTCATTAGAAT 59.796 43.478 0.00 0.00 42.71 2.40
84 85 2.578021 AGCCTCCTGCCTTTCATTAGAA 59.422 45.455 0.00 0.00 42.71 2.10
85 86 2.171448 GAGCCTCCTGCCTTTCATTAGA 59.829 50.000 0.00 0.00 42.71 2.10
86 87 2.172293 AGAGCCTCCTGCCTTTCATTAG 59.828 50.000 0.00 0.00 42.71 1.73
87 88 2.200081 AGAGCCTCCTGCCTTTCATTA 58.800 47.619 0.00 0.00 42.71 1.90
88 89 0.998145 AGAGCCTCCTGCCTTTCATT 59.002 50.000 0.00 0.00 42.71 2.57
89 90 0.998145 AAGAGCCTCCTGCCTTTCAT 59.002 50.000 0.00 0.00 42.71 2.57
90 91 0.773644 AAAGAGCCTCCTGCCTTTCA 59.226 50.000 0.00 0.00 42.71 2.69
91 92 1.172175 CAAAGAGCCTCCTGCCTTTC 58.828 55.000 0.00 0.00 42.71 2.62
92 93 0.897401 GCAAAGAGCCTCCTGCCTTT 60.897 55.000 5.31 0.00 42.71 3.11
93 94 1.303970 GCAAAGAGCCTCCTGCCTT 60.304 57.895 5.31 0.00 42.71 4.35
94 95 2.072874 TTGCAAAGAGCCTCCTGCCT 62.073 55.000 12.43 0.00 44.83 4.75
95 96 1.181098 TTTGCAAAGAGCCTCCTGCC 61.181 55.000 8.05 0.00 44.83 4.85
96 97 0.675633 TTTTGCAAAGAGCCTCCTGC 59.324 50.000 12.41 8.98 44.83 4.85
97 98 2.747436 GTTTTTGCAAAGAGCCTCCTG 58.253 47.619 12.41 0.00 44.83 3.86
98 99 1.338020 CGTTTTTGCAAAGAGCCTCCT 59.662 47.619 12.41 0.00 44.83 3.69
99 100 1.770957 CGTTTTTGCAAAGAGCCTCC 58.229 50.000 12.41 0.00 44.83 4.30
100 101 1.131771 GCGTTTTTGCAAAGAGCCTC 58.868 50.000 12.41 0.00 44.83 4.70
101 102 0.594796 CGCGTTTTTGCAAAGAGCCT 60.595 50.000 21.49 0.00 44.83 4.58
102 103 1.845985 CGCGTTTTTGCAAAGAGCC 59.154 52.632 21.49 8.85 44.83 4.70
103 104 1.199126 GCGCGTTTTTGCAAAGAGC 59.801 52.632 12.41 16.58 45.96 4.09
104 105 0.772341 GAGCGCGTTTTTGCAAAGAG 59.228 50.000 12.41 8.84 34.15 2.85
105 106 0.380378 AGAGCGCGTTTTTGCAAAGA 59.620 45.000 12.41 4.96 34.15 2.52
106 107 0.499761 CAGAGCGCGTTTTTGCAAAG 59.500 50.000 12.41 2.14 34.15 2.77
107 108 0.099613 TCAGAGCGCGTTTTTGCAAA 59.900 45.000 8.05 8.05 34.15 3.68
108 109 0.591236 GTCAGAGCGCGTTTTTGCAA 60.591 50.000 8.43 0.00 34.15 4.08
109 110 1.010125 GTCAGAGCGCGTTTTTGCA 60.010 52.632 8.43 0.00 34.15 4.08
110 111 1.725973 GGTCAGAGCGCGTTTTTGC 60.726 57.895 8.43 1.72 0.00 3.68
111 112 1.438710 CGGTCAGAGCGCGTTTTTG 60.439 57.895 9.46 4.95 30.39 2.44
112 113 2.604174 CCGGTCAGAGCGCGTTTTT 61.604 57.895 16.77 0.00 37.85 1.94
113 114 3.041940 CCGGTCAGAGCGCGTTTT 61.042 61.111 16.77 0.00 37.85 2.43
135 136 3.692406 AAGTGGACTCGTCGGGCC 61.692 66.667 0.00 0.00 0.00 5.80
136 137 2.432628 CAAGTGGACTCGTCGGGC 60.433 66.667 0.00 0.00 0.00 6.13
137 138 1.080705 GACAAGTGGACTCGTCGGG 60.081 63.158 0.00 0.00 0.00 5.14
138 139 0.109689 GAGACAAGTGGACTCGTCGG 60.110 60.000 0.00 0.00 33.56 4.79
139 140 0.875728 AGAGACAAGTGGACTCGTCG 59.124 55.000 0.00 0.00 36.03 5.12
140 141 2.095466 CAGAGAGACAAGTGGACTCGTC 60.095 54.545 0.00 0.00 36.03 4.20
141 142 1.883275 CAGAGAGACAAGTGGACTCGT 59.117 52.381 0.00 0.00 36.03 4.18
142 143 1.883275 ACAGAGAGACAAGTGGACTCG 59.117 52.381 0.00 0.00 36.03 4.18
143 144 2.887783 TCACAGAGAGACAAGTGGACTC 59.112 50.000 0.00 0.00 33.01 3.36
144 145 2.950781 TCACAGAGAGACAAGTGGACT 58.049 47.619 0.00 0.00 33.01 3.85
145 146 3.951775 ATCACAGAGAGACAAGTGGAC 57.048 47.619 0.00 0.00 33.01 4.02
146 147 3.007290 CCAATCACAGAGAGACAAGTGGA 59.993 47.826 0.00 0.00 33.01 4.02
147 148 3.244353 ACCAATCACAGAGAGACAAGTGG 60.244 47.826 0.00 0.00 33.01 4.00
148 149 3.993081 GACCAATCACAGAGAGACAAGTG 59.007 47.826 0.00 0.00 0.00 3.16
149 150 3.900601 AGACCAATCACAGAGAGACAAGT 59.099 43.478 0.00 0.00 0.00 3.16
150 151 4.533919 AGACCAATCACAGAGAGACAAG 57.466 45.455 0.00 0.00 0.00 3.16
151 152 4.464244 CCTAGACCAATCACAGAGAGACAA 59.536 45.833 0.00 0.00 0.00 3.18
152 153 4.019858 CCTAGACCAATCACAGAGAGACA 58.980 47.826 0.00 0.00 0.00 3.41
153 154 4.097286 GTCCTAGACCAATCACAGAGAGAC 59.903 50.000 0.00 0.00 0.00 3.36
154 155 4.274147 GTCCTAGACCAATCACAGAGAGA 58.726 47.826 0.00 0.00 0.00 3.10
155 156 4.647424 GTCCTAGACCAATCACAGAGAG 57.353 50.000 0.00 0.00 0.00 3.20
167 168 3.441371 CGTGCAACTTTGGTCCTAGACC 61.441 54.545 6.83 6.83 43.92 3.85
168 169 1.798813 CGTGCAACTTTGGTCCTAGAC 59.201 52.381 0.00 0.00 31.75 2.59
169 170 1.414919 ACGTGCAACTTTGGTCCTAGA 59.585 47.619 0.00 0.00 31.75 2.43
170 171 1.878953 ACGTGCAACTTTGGTCCTAG 58.121 50.000 0.00 0.00 31.75 3.02
171 172 1.944024 CAACGTGCAACTTTGGTCCTA 59.056 47.619 0.00 0.00 41.80 2.94
172 173 0.738389 CAACGTGCAACTTTGGTCCT 59.262 50.000 0.00 0.00 41.80 3.85
173 174 3.250220 CAACGTGCAACTTTGGTCC 57.750 52.632 0.00 0.00 41.80 4.46
177 178 2.956469 CACCCAACGTGCAACTTTG 58.044 52.632 0.00 0.00 44.72 2.77
185 186 0.525242 CACAACTTGCACCCAACGTG 60.525 55.000 0.00 0.00 46.03 4.49
186 187 1.662438 CCACAACTTGCACCCAACGT 61.662 55.000 0.00 0.00 0.00 3.99
187 188 1.065600 CCACAACTTGCACCCAACG 59.934 57.895 0.00 0.00 0.00 4.10
188 189 1.040339 TCCCACAACTTGCACCCAAC 61.040 55.000 0.00 0.00 0.00 3.77
189 190 1.040339 GTCCCACAACTTGCACCCAA 61.040 55.000 0.00 0.00 0.00 4.12
190 191 1.454847 GTCCCACAACTTGCACCCA 60.455 57.895 0.00 0.00 0.00 4.51
191 192 1.152756 AGTCCCACAACTTGCACCC 60.153 57.895 0.00 0.00 0.00 4.61
192 193 1.455383 CCAGTCCCACAACTTGCACC 61.455 60.000 0.00 0.00 0.00 5.01
193 194 1.455383 CCCAGTCCCACAACTTGCAC 61.455 60.000 0.00 0.00 0.00 4.57
194 195 1.152777 CCCAGTCCCACAACTTGCA 60.153 57.895 0.00 0.00 0.00 4.08
195 196 0.109723 TACCCAGTCCCACAACTTGC 59.890 55.000 0.00 0.00 0.00 4.01
196 197 2.504367 CTTACCCAGTCCCACAACTTG 58.496 52.381 0.00 0.00 0.00 3.16
197 198 1.423921 CCTTACCCAGTCCCACAACTT 59.576 52.381 0.00 0.00 0.00 2.66
198 199 1.064825 CCTTACCCAGTCCCACAACT 58.935 55.000 0.00 0.00 0.00 3.16
199 200 0.769247 ACCTTACCCAGTCCCACAAC 59.231 55.000 0.00 0.00 0.00 3.32
200 201 1.061546 GACCTTACCCAGTCCCACAA 58.938 55.000 0.00 0.00 0.00 3.33
201 202 0.104882 TGACCTTACCCAGTCCCACA 60.105 55.000 0.00 0.00 31.76 4.17
202 203 1.286248 ATGACCTTACCCAGTCCCAC 58.714 55.000 0.00 0.00 31.76 4.61
203 204 2.053747 AATGACCTTACCCAGTCCCA 57.946 50.000 0.00 0.00 31.76 4.37
204 205 3.089284 CAAAATGACCTTACCCAGTCCC 58.911 50.000 0.00 0.00 31.76 4.46
205 206 2.492088 GCAAAATGACCTTACCCAGTCC 59.508 50.000 0.00 0.00 31.76 3.85
206 207 3.153919 TGCAAAATGACCTTACCCAGTC 58.846 45.455 0.00 0.00 0.00 3.51
207 208 3.237268 TGCAAAATGACCTTACCCAGT 57.763 42.857 0.00 0.00 0.00 4.00
208 209 3.573967 ACTTGCAAAATGACCTTACCCAG 59.426 43.478 0.00 0.00 0.00 4.45
209 210 3.571590 ACTTGCAAAATGACCTTACCCA 58.428 40.909 0.00 0.00 0.00 4.51
210 211 4.600692 AACTTGCAAAATGACCTTACCC 57.399 40.909 0.00 0.00 0.00 3.69
211 212 7.338449 TCCTATAACTTGCAAAATGACCTTACC 59.662 37.037 0.00 0.00 0.00 2.85
212 213 8.182227 GTCCTATAACTTGCAAAATGACCTTAC 58.818 37.037 0.00 0.00 0.00 2.34
213 214 7.338449 GGTCCTATAACTTGCAAAATGACCTTA 59.662 37.037 0.00 0.00 36.49 2.69
214 215 6.152831 GGTCCTATAACTTGCAAAATGACCTT 59.847 38.462 0.00 0.00 36.49 3.50
215 216 5.652452 GGTCCTATAACTTGCAAAATGACCT 59.348 40.000 0.00 0.00 36.49 3.85
216 217 5.417580 TGGTCCTATAACTTGCAAAATGACC 59.582 40.000 15.44 15.44 39.14 4.02
217 218 6.509418 TGGTCCTATAACTTGCAAAATGAC 57.491 37.500 0.00 0.95 0.00 3.06
218 219 7.375053 GTTTGGTCCTATAACTTGCAAAATGA 58.625 34.615 0.00 0.00 0.00 2.57
219 220 6.589907 GGTTTGGTCCTATAACTTGCAAAATG 59.410 38.462 0.00 0.00 0.00 2.32
220 221 6.268847 TGGTTTGGTCCTATAACTTGCAAAAT 59.731 34.615 0.00 0.00 0.00 1.82
221 222 5.598830 TGGTTTGGTCCTATAACTTGCAAAA 59.401 36.000 0.00 0.00 0.00 2.44
222 223 5.141182 TGGTTTGGTCCTATAACTTGCAAA 58.859 37.500 0.00 0.00 0.00 3.68
223 224 4.730966 TGGTTTGGTCCTATAACTTGCAA 58.269 39.130 0.00 0.00 0.00 4.08
224 225 4.374689 TGGTTTGGTCCTATAACTTGCA 57.625 40.909 0.00 0.00 0.00 4.08
225 226 4.947388 TGATGGTTTGGTCCTATAACTTGC 59.053 41.667 0.00 0.00 0.00 4.01
226 227 8.924511 ATATGATGGTTTGGTCCTATAACTTG 57.075 34.615 0.00 0.00 0.00 3.16
227 228 9.354673 CAATATGATGGTTTGGTCCTATAACTT 57.645 33.333 0.00 0.00 0.00 2.66
228 229 8.502738 ACAATATGATGGTTTGGTCCTATAACT 58.497 33.333 0.00 0.00 0.00 2.24
229 230 8.567948 CACAATATGATGGTTTGGTCCTATAAC 58.432 37.037 0.00 0.00 0.00 1.89
230 231 8.498575 TCACAATATGATGGTTTGGTCCTATAA 58.501 33.333 0.00 0.00 29.99 0.98
231 232 8.040002 TCACAATATGATGGTTTGGTCCTATA 57.960 34.615 0.00 0.00 29.99 1.31
232 233 6.910191 TCACAATATGATGGTTTGGTCCTAT 58.090 36.000 0.00 0.00 29.99 2.57
233 234 6.320434 TCACAATATGATGGTTTGGTCCTA 57.680 37.500 0.00 0.00 29.99 2.94
234 235 5.191727 TCACAATATGATGGTTTGGTCCT 57.808 39.130 0.00 0.00 29.99 3.85
235 236 4.202050 GCTCACAATATGATGGTTTGGTCC 60.202 45.833 0.00 0.00 36.48 4.46
236 237 4.398988 TGCTCACAATATGATGGTTTGGTC 59.601 41.667 0.00 0.00 36.48 4.02
237 238 4.343231 TGCTCACAATATGATGGTTTGGT 58.657 39.130 0.00 0.00 36.48 3.67
238 239 4.987408 TGCTCACAATATGATGGTTTGG 57.013 40.909 0.00 0.00 36.48 3.28
239 240 5.957798 ACTTGCTCACAATATGATGGTTTG 58.042 37.500 0.00 0.00 36.48 2.93
240 241 6.435277 AGAACTTGCTCACAATATGATGGTTT 59.565 34.615 0.00 0.00 36.48 3.27
241 242 5.948162 AGAACTTGCTCACAATATGATGGTT 59.052 36.000 0.00 0.00 36.48 3.67
242 243 5.503927 AGAACTTGCTCACAATATGATGGT 58.496 37.500 0.00 0.00 36.48 3.55
243 244 6.204301 CCTAGAACTTGCTCACAATATGATGG 59.796 42.308 0.00 0.00 36.48 3.51
244 245 6.988580 TCCTAGAACTTGCTCACAATATGATG 59.011 38.462 0.00 0.00 36.48 3.07
245 246 6.989169 GTCCTAGAACTTGCTCACAATATGAT 59.011 38.462 0.00 0.00 36.48 2.45
246 247 6.341316 GTCCTAGAACTTGCTCACAATATGA 58.659 40.000 0.00 0.00 34.61 2.15
247 248 5.525378 GGTCCTAGAACTTGCTCACAATATG 59.475 44.000 0.00 0.00 34.61 1.78
248 249 5.396884 GGGTCCTAGAACTTGCTCACAATAT 60.397 44.000 0.00 0.00 34.61 1.28
249 250 4.081087 GGGTCCTAGAACTTGCTCACAATA 60.081 45.833 0.00 0.00 34.61 1.90
250 251 3.307762 GGGTCCTAGAACTTGCTCACAAT 60.308 47.826 0.00 0.00 34.61 2.71
251 252 2.038557 GGGTCCTAGAACTTGCTCACAA 59.961 50.000 0.00 0.00 0.00 3.33
252 253 1.623811 GGGTCCTAGAACTTGCTCACA 59.376 52.381 0.00 0.00 0.00 3.58
253 254 1.066071 GGGGTCCTAGAACTTGCTCAC 60.066 57.143 0.00 0.00 0.00 3.51
254 255 1.276622 GGGGTCCTAGAACTTGCTCA 58.723 55.000 0.00 0.00 0.00 4.26
255 256 0.542333 GGGGGTCCTAGAACTTGCTC 59.458 60.000 0.00 0.00 0.00 4.26
256 257 0.178873 TGGGGGTCCTAGAACTTGCT 60.179 55.000 0.00 0.00 0.00 3.91
257 258 0.696501 TTGGGGGTCCTAGAACTTGC 59.303 55.000 0.00 0.00 0.00 4.01
258 259 2.945890 GCATTGGGGGTCCTAGAACTTG 60.946 54.545 0.00 0.00 0.00 3.16
259 260 1.285078 GCATTGGGGGTCCTAGAACTT 59.715 52.381 0.00 0.00 0.00 2.66
260 261 0.919710 GCATTGGGGGTCCTAGAACT 59.080 55.000 0.00 0.00 0.00 3.01
261 262 0.919710 AGCATTGGGGGTCCTAGAAC 59.080 55.000 0.00 0.00 0.00 3.01
262 263 1.681229 AAGCATTGGGGGTCCTAGAA 58.319 50.000 0.00 0.00 0.00 2.10
263 264 1.681229 AAAGCATTGGGGGTCCTAGA 58.319 50.000 0.00 0.00 0.00 2.43
264 265 2.532250 AAAAGCATTGGGGGTCCTAG 57.468 50.000 0.00 0.00 0.00 3.02
265 266 3.335484 AGTTAAAAGCATTGGGGGTCCTA 59.665 43.478 0.00 0.00 0.00 2.94
266 267 2.111792 AGTTAAAAGCATTGGGGGTCCT 59.888 45.455 0.00 0.00 0.00 3.85
267 268 2.496070 GAGTTAAAAGCATTGGGGGTCC 59.504 50.000 0.00 0.00 0.00 4.46
268 269 3.431415 AGAGTTAAAAGCATTGGGGGTC 58.569 45.455 0.00 0.00 0.00 4.46
269 270 3.542969 AGAGTTAAAAGCATTGGGGGT 57.457 42.857 0.00 0.00 0.00 4.95
270 271 4.890158 AAAGAGTTAAAAGCATTGGGGG 57.110 40.909 0.00 0.00 0.00 5.40
323 324 2.278659 CTAACACCACGCGCATGTCG 62.279 60.000 5.73 0.00 42.12 4.35
363 364 3.423154 GCGCGTGTGGAAGGAAGG 61.423 66.667 8.43 0.00 0.00 3.46
365 366 2.357034 GAGCGCGTGTGGAAGGAA 60.357 61.111 8.43 0.00 0.00 3.36
366 367 3.573772 CTGAGCGCGTGTGGAAGGA 62.574 63.158 8.43 0.00 0.00 3.36
367 368 3.114616 CTGAGCGCGTGTGGAAGG 61.115 66.667 8.43 0.00 0.00 3.46
368 369 3.114616 CCTGAGCGCGTGTGGAAG 61.115 66.667 8.43 0.00 0.00 3.46
369 370 3.158537 TTCCTGAGCGCGTGTGGAA 62.159 57.895 18.19 18.19 34.81 3.53
487 490 0.108615 CGCTTTCGGTGTGAGATCCT 60.109 55.000 0.00 0.00 0.00 3.24
671 675 0.389296 CTGTGTCAACGCGGGTGATA 60.389 55.000 12.47 9.32 0.00 2.15
691 695 1.535462 CACTGGGTTTTCTCGCGATTT 59.465 47.619 10.36 0.00 0.00 2.17
696 700 1.282875 GTGCACTGGGTTTTCTCGC 59.717 57.895 10.32 0.00 0.00 5.03
700 704 0.755327 AGGTGGTGCACTGGGTTTTC 60.755 55.000 17.98 0.00 34.40 2.29
786 790 2.488820 GTGGACCTCGTCTACGGC 59.511 66.667 2.24 0.00 34.65 5.68
817 821 2.947127 ATAGAATTCTCCAGCTGGCC 57.053 50.000 28.91 11.71 34.44 5.36
870 874 0.824109 GGAGGCTATTTGGGTTTGGC 59.176 55.000 0.00 0.00 0.00 4.52
878 882 0.179006 GAGGGCTGGGAGGCTATTTG 60.179 60.000 0.00 0.00 41.09 2.32
939 943 0.103937 GACAGCCGCAGAGCTAGATT 59.896 55.000 0.00 0.00 42.61 2.40
969 973 2.677228 CTGCGGGGAGGGAAATGT 59.323 61.111 0.00 0.00 0.00 2.71
995 999 2.125310 CGCCGGGACACATGCTTA 60.125 61.111 2.18 0.00 0.00 3.09
1521 1525 9.555727 AAAAATCAAGTCTAGTGCTTTACAGTA 57.444 29.630 0.00 0.00 32.79 2.74
1558 1562 3.243724 CACCAACCAAATTTTAGGGGGA 58.756 45.455 11.94 0.00 0.00 4.81
1690 1695 6.366332 CCAAGGATACACGCATAGTATCTTTC 59.634 42.308 15.51 4.52 42.64 2.62
1739 1744 2.975489 AGGAGTATTATGACCTGCAGGG 59.025 50.000 35.42 18.18 40.27 4.45
1754 1759 6.978659 CGCACTACATTTAGAATGAAGGAGTA 59.021 38.462 7.59 0.00 0.00 2.59
1756 1761 5.812642 ACGCACTACATTTAGAATGAAGGAG 59.187 40.000 7.59 2.68 0.00 3.69
1757 1762 5.730550 ACGCACTACATTTAGAATGAAGGA 58.269 37.500 7.59 0.00 0.00 3.36
1758 1763 5.006746 GGACGCACTACATTTAGAATGAAGG 59.993 44.000 7.59 0.87 0.00 3.46
1759 1764 5.580691 TGGACGCACTACATTTAGAATGAAG 59.419 40.000 7.59 0.00 0.00 3.02
1760 1765 5.483811 TGGACGCACTACATTTAGAATGAA 58.516 37.500 7.59 0.00 0.00 2.57
1763 1768 5.428253 ACATGGACGCACTACATTTAGAAT 58.572 37.500 0.00 0.00 0.00 2.40
1764 1769 4.827692 ACATGGACGCACTACATTTAGAA 58.172 39.130 0.00 0.00 0.00 2.10
1765 1770 4.465632 ACATGGACGCACTACATTTAGA 57.534 40.909 0.00 0.00 0.00 2.10
1767 1772 5.950758 AAAACATGGACGCACTACATTTA 57.049 34.783 0.00 0.00 0.00 1.40
1768 1773 4.846779 AAAACATGGACGCACTACATTT 57.153 36.364 0.00 0.00 0.00 2.32
1769 1774 4.612712 CGAAAAACATGGACGCACTACATT 60.613 41.667 0.00 0.00 0.00 2.71
1770 1775 3.120338 CGAAAAACATGGACGCACTACAT 60.120 43.478 0.00 0.00 0.00 2.29
1771 1776 2.222213 CGAAAAACATGGACGCACTACA 59.778 45.455 0.00 0.00 0.00 2.74
1773 1778 2.734606 CTCGAAAAACATGGACGCACTA 59.265 45.455 0.00 0.00 0.00 2.74
1774 1779 1.531149 CTCGAAAAACATGGACGCACT 59.469 47.619 0.00 0.00 0.00 4.40
1775 1780 1.529438 TCTCGAAAAACATGGACGCAC 59.471 47.619 0.00 0.00 0.00 5.34
1776 1781 1.872388 TCTCGAAAAACATGGACGCA 58.128 45.000 0.00 0.00 0.00 5.24
1777 1782 2.673368 AGATCTCGAAAAACATGGACGC 59.327 45.455 0.00 0.00 0.00 5.19
1778 1783 6.403333 TTTAGATCTCGAAAAACATGGACG 57.597 37.500 0.00 0.00 0.00 4.79
1779 1784 9.065871 CAAATTTAGATCTCGAAAAACATGGAC 57.934 33.333 0.00 0.00 0.00 4.02
1780 1785 9.008965 TCAAATTTAGATCTCGAAAAACATGGA 57.991 29.630 0.00 0.00 0.00 3.41
1781 1786 9.793252 ATCAAATTTAGATCTCGAAAAACATGG 57.207 29.630 0.00 0.00 0.00 3.66
1807 3516 9.349713 AGTTGGTCTTGTTGACTAAATTTATGA 57.650 29.630 0.00 0.00 45.46 2.15
1830 3539 1.394618 TTTTTGCTACCGCCACAGTT 58.605 45.000 0.00 0.00 34.43 3.16
1832 3541 2.723124 AATTTTTGCTACCGCCACAG 57.277 45.000 0.00 0.00 34.43 3.66
1835 3544 3.948473 TGCTATAATTTTTGCTACCGCCA 59.052 39.130 4.30 0.00 34.43 5.69
1894 3603 2.018542 TCTAAATGTAGTGCACCCGC 57.981 50.000 14.63 4.51 39.24 6.13
1899 3608 8.972127 ACTCTCTCTATTTCTAAATGTAGTGCA 58.028 33.333 0.00 0.00 0.00 4.57
1910 3619 9.496873 GCTAGTGACATACTCTCTCTATTTCTA 57.503 37.037 0.00 0.00 40.89 2.10
1911 3620 7.996066 TGCTAGTGACATACTCTCTCTATTTCT 59.004 37.037 0.00 0.00 40.89 2.52
1916 3625 5.471797 GCATGCTAGTGACATACTCTCTCTA 59.528 44.000 11.37 0.00 40.89 2.43
1917 3626 4.278170 GCATGCTAGTGACATACTCTCTCT 59.722 45.833 11.37 0.00 40.89 3.10
1921 3630 3.956848 TCTGCATGCTAGTGACATACTCT 59.043 43.478 20.33 0.00 40.89 3.24
1928 3637 1.760268 GCGCTCTGCATGCTAGTGAC 61.760 60.000 27.51 18.45 45.45 3.67
1930 3639 3.012399 GCGCTCTGCATGCTAGTG 58.988 61.111 20.33 21.50 45.45 2.74
1949 3658 1.586154 ATAAAGCAGCCACGCACACC 61.586 55.000 0.00 0.00 0.00 4.16
1950 3659 0.240945 AATAAAGCAGCCACGCACAC 59.759 50.000 0.00 0.00 0.00 3.82
2025 4076 7.095355 GGTGAACTGATTTTTAGTAGCTTTCGA 60.095 37.037 0.00 0.00 0.00 3.71
2028 4079 6.775629 TGGGTGAACTGATTTTTAGTAGCTTT 59.224 34.615 0.00 0.00 0.00 3.51
2029 4080 6.303839 TGGGTGAACTGATTTTTAGTAGCTT 58.696 36.000 0.00 0.00 0.00 3.74
2031 4082 6.404734 CCATGGGTGAACTGATTTTTAGTAGC 60.405 42.308 2.85 0.00 0.00 3.58
2033 4084 6.548321 ACCATGGGTGAACTGATTTTTAGTA 58.452 36.000 18.09 0.00 32.98 1.82
2034 4085 5.393866 ACCATGGGTGAACTGATTTTTAGT 58.606 37.500 18.09 0.00 32.98 2.24
2035 4086 5.982890 ACCATGGGTGAACTGATTTTTAG 57.017 39.130 18.09 0.00 32.98 1.85
2036 4087 6.778069 TGTAACCATGGGTGAACTGATTTTTA 59.222 34.615 14.24 0.00 35.34 1.52
2105 4188 0.572590 CGACTTTCGATGATGACGGC 59.427 55.000 0.00 0.00 43.74 5.68
2106 4189 1.846782 GACGACTTTCGATGATGACGG 59.153 52.381 1.94 0.00 43.74 4.79
2114 4197 2.924290 GCTTTGCTAGACGACTTTCGAT 59.076 45.455 1.94 0.00 43.74 3.59
2118 4201 1.610886 GGGGCTTTGCTAGACGACTTT 60.611 52.381 0.00 0.00 29.87 2.66
2120 4203 1.597461 GGGGCTTTGCTAGACGACT 59.403 57.895 0.00 0.00 29.87 4.18
2138 4221 4.444024 CCACCATTGTGCGTCGCG 62.444 66.667 13.38 0.00 41.35 5.87
2142 4225 0.179032 TTCTCACCACCATTGTGCGT 60.179 50.000 0.00 0.00 41.35 5.24
2143 4226 0.238289 GTTCTCACCACCATTGTGCG 59.762 55.000 0.00 0.00 41.35 5.34
2156 4239 0.397564 TGAGGCAGTGCATGTTCTCA 59.602 50.000 18.61 16.28 38.27 3.27
2163 4246 1.303888 CCAAGGTGAGGCAGTGCAT 60.304 57.895 18.61 10.56 0.00 3.96
2199 4282 1.961180 AAGAAGATGGCGACTCCGGG 61.961 60.000 0.00 0.00 37.80 5.73
2215 4298 1.372499 CACTCGCCGACCGAAAAGA 60.372 57.895 0.00 0.00 46.81 2.52
2223 4306 3.575351 AAGGTCAGCACTCGCCGAC 62.575 63.158 0.00 0.00 43.59 4.79
2224 4307 2.377628 AAAAGGTCAGCACTCGCCGA 62.378 55.000 0.00 0.00 39.83 5.54
2225 4308 1.961277 AAAAGGTCAGCACTCGCCG 60.961 57.895 0.00 0.00 39.83 6.46
2226 4309 0.884704 TCAAAAGGTCAGCACTCGCC 60.885 55.000 0.00 0.00 39.83 5.54
2227 4310 0.235926 GTCAAAAGGTCAGCACTCGC 59.764 55.000 0.00 0.00 38.99 5.03
2228 4311 0.508641 CGTCAAAAGGTCAGCACTCG 59.491 55.000 0.00 0.00 0.00 4.18
2229 4312 0.868406 CCGTCAAAAGGTCAGCACTC 59.132 55.000 0.00 0.00 0.00 3.51
2230 4313 1.166531 GCCGTCAAAAGGTCAGCACT 61.167 55.000 0.00 0.00 0.00 4.40
2231 4314 1.166531 AGCCGTCAAAAGGTCAGCAC 61.167 55.000 0.00 0.00 0.00 4.40
2232 4315 0.465460 AAGCCGTCAAAAGGTCAGCA 60.465 50.000 0.00 0.00 0.00 4.41
2233 4316 0.238553 GAAGCCGTCAAAAGGTCAGC 59.761 55.000 0.00 0.00 0.00 4.26
2234 4317 1.801178 GAGAAGCCGTCAAAAGGTCAG 59.199 52.381 0.00 0.00 0.00 3.51
2235 4318 1.872237 CGAGAAGCCGTCAAAAGGTCA 60.872 52.381 0.00 0.00 0.00 4.02
2236 4319 0.790814 CGAGAAGCCGTCAAAAGGTC 59.209 55.000 0.00 0.00 0.00 3.85
2237 4320 1.228657 GCGAGAAGCCGTCAAAAGGT 61.229 55.000 0.00 0.00 40.81 3.50
2238 4321 1.497722 GCGAGAAGCCGTCAAAAGG 59.502 57.895 0.00 0.00 40.81 3.11
2296 4379 2.831770 CCTAGCCGCCACATCCAT 59.168 61.111 0.00 0.00 0.00 3.41
2318 4401 0.529833 ATCAGTCAGTGGAGCTGTCG 59.470 55.000 0.00 0.00 45.23 4.35
2320 4403 1.935799 AGATCAGTCAGTGGAGCTGT 58.064 50.000 0.00 0.46 45.23 4.40
2322 4405 2.024464 AGGTAGATCAGTCAGTGGAGCT 60.024 50.000 0.00 0.00 33.75 4.09
2327 4410 3.194329 TGAGCAAGGTAGATCAGTCAGTG 59.806 47.826 0.00 0.00 29.40 3.66
2371 4454 3.075005 CCCAGACCCGTCGTCCAT 61.075 66.667 0.00 0.00 43.08 3.41
2381 4464 0.615850 GATATAGCCCTGCCCAGACC 59.384 60.000 0.00 0.00 0.00 3.85
2398 4481 1.319541 CGTCTACCATCTCACCGGAT 58.680 55.000 9.46 0.00 0.00 4.18
2401 4484 0.100682 CCACGTCTACCATCTCACCG 59.899 60.000 0.00 0.00 0.00 4.94
2402 4485 1.135083 CACCACGTCTACCATCTCACC 60.135 57.143 0.00 0.00 0.00 4.02
2438 4522 0.534203 GTCACCACACCGACCAACAT 60.534 55.000 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.