>input_sequence_78102
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-------------------------------------------ATGTGTCCCGGCGGCAGGTACGCGGGCCTTGACCTCC
CCGCCGGCGCCGGCGCGGGGGACCTGCGGCCGGCGTTCGACGTGCTGGACGCGGACCACGACGGCCGCATCAGCCGCGAC
GACCTCAAGACCTTCTACGCCAACGCGGGCGCCACCGACGAGCGCTTCGACGACGACGACATCGAGGCCATGATCACCGC
CGCCGACGCCGACCTCGACGGCTTCGTGCAGTACCACGAGTTCGAGGGCCTCCTTGGCCGCGCAGCTAAGGCGGGGGCGG
ACAGCGGCTGCCGCTCGGCGATGGAGGACGCCTTCCGGCTAATGGACCGCGACGGGGACGGCAAGGTCGGGTTCGAGGAC
CTCAAGGCCTACCTCGGGTGGGCCGGGATGCCGGTCGCCGACGACGAGATCCGCGCCATGATAAGTATGGCTGGTGACGG
CGACAGCGGCGTGGGGCTCGAGGCGCTCGCCAGAATACTCGCCGTGGACTTTGATGCCATCGTCTGA-------------
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>chr4A_1_TraesCS4A01G123100
ACCTGCAGCGGCAACACCGCAATCGATCGAGCAACTGAATAAAATCTCAGCTGTGTTTTCAGTTCACTCAGCACAGCGGG
TTGATTCTAATGAAAGGCAGGAGGCTCTTTGCAAAAACGCGCTCTGACCGGCTCGGGCCCGACGAGTCCACTTGTCTCTC
TGTGATTGGTCTAGGACCAAAGTTGCACGTTGGGTGCAAGTTGTGGGACTGGGTAAGGTCATTTTGCAAGTTATAGGACC
AAACCATCATATTGTGAGCAAGTTCTAGGACCCCCAATGCTTTTAACTCTTTTTTTTTTAAGACCGAAGACGCTCTTCAA
AAACGACATGCGCGTGGTGTTAGCTACACAGCCTTCCTTCCTTCCTTCCTTCCACACGCGCTCAGGAACGTAAGGTGGAT
CGAACAGTCACGCGCGTGGTG--TTGCACAAGCAGCTTTCCTTGCGAAAGATACTACAAACTCAGCCACAAAAAATTCTG
ACGCCACGAAGGATCTCACACCGAAAGCGACGGCCAGAGCTCGTACCGGCGACCGACCGGTGATGTCAGCCTACACGTCT
TCCCGATTGGACCGGTCCAACCAAGCGCCGAAAACCTGTGGCCCCACGCTCGGCTCCTTGCCCTCCAAGCTTTCTCTCAC
CTCAAATCGTAAATCAAACCAA-TTAAATACTCATATCACCCGCGTTGACACAGAAATCGCGAGAAAACCCAGTGCACCA
CCTCCACGAAACACCCGTGTCCCGGTGGGAATCTGCAAGATCAAAACGTGAGATACAGATATACAGCAGGCCGTAGACGA
GGTCCACGAATAGCCCTCCTGGCCAGCTGGAGAATTCTATTCCGCCGCCTATAAATACGGGCCTCCTCTCCTCGCCAAAC
CCAAATAGCCTCCCAGCCCTCTCTGCCTCCCGAAAAAACAAACAAACAGAGATCGCGCTTCCAATCTAGCTCTGCGGCTG
TCGCGAGGCTCCACATTTCCCTCCCCGCAGCGCCGAAGTAAGCATGTGTCCCGGCGGCAGGTACGCGGGCCTTGACCTCC
CCGCCGGCGCCGGCGCGGGGGACCTGCGGCCGGCGTTCGACGTGCTGGACGCGGACCACGACGGCCGCATCAGCCGCGAC
GACCTCAAGACCTTCTACGCCAACGCGGGCGCCACCGACGAGCGCTTCGACGACGACGACATCGAGGCCATGATCACCGC
CGCCGACGCCGACCTCGACGGCTTCGTGCAGTACCACGAGTTCGAGGGCCTCCTTGGCCGCGCAGCTAAGGCGGGGGCGG
ACAGCGGCTGCCGCTCGGCGATGGAGGACGCCTTCCGGCTAATGGACCGCGACGGGGACGGCAAGGTCGGGTTCGAGGAC
CTCAAGGCCTACCTCGGGTGGGCCGGGATGCCGGTCGCCGACGACGAGATCCGCGCCATGATAAGTATGGCTGGTGACGG
CGACAGCGGCGTGGGGCTCGAGGCGCTCGCCAGAATACTCGCCGTGGACTTTGATGCCATCGTCTGAAGAATCTAAAATA
ATCCTACTGTAAAGCACTAGACTTGATTTTTTGGGACTTTTTCCCCCTAAAATTTGGTTGGTGGGGAGAGCAGGCTGGCG
TGAGATTGATTGTTGTGAGTGGTTCTCGTTAACCGTGAGTTTTGAATGTATCGTA-CTGTTACCCATAAAAAATCGAAAA
TCTTTGAGAAACATGAAAGATACTATGCGTGTATCCTTGGAAACTTAAACAAGTGCTCTACTCCCCTGCAGGTCATAATA
CTCCTTCATTCTAAATGTAGTGCGTCCATGTTTTT---------------------------------------------
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-----------------------------------------------------------CGAGATCTAAATTTGATCATA
AATTTAGTCAACAAGACCAACTGTGGCGGTAGCAAAAATTATAGCACTTAATTCGTATTTTCAAACTTAGATTTCAAAAA
ATGCGGGTGCACTACATTTAGAAATAGAGAGAGTATGTCACTAGCATGCAGAGCGCCGGTGTGCGTGGCTGCTTTATTTT
TTAT-----ATAAGAAAAGAAGACAA------------------------------------------------------
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-------------------------------------------TGGGTAAGCAACCAATTTAACTCAGATAAATATCGAA
AGCTACTAAAAATCAGTTCACCCATGGTTACAAACACTTAGCCACTCTGGAG----------------------------
----TCGCCTCCGCTACTCCCTCCTTCGCCGTCATCATCGAAAGTCGTCTAGCAAAGCCCCGCGACGCACAATGGTGGTG
AGAACATGCACTGCCTCACCTTGGTGCCTCGGATCCAAGGTCCCGGAGTCGCCATCTTCTTTTCGGTCGGCGAGTGCTGA
CCTTTTGACGGCTTCTCGCACTCGTCGCCGCCATGGGGAGGCCCCGGATGGATCCGACATGGATGTGGCGGCTAGGCGGG
CGACAGCTCCACTGACTGATCTACCTTGCTCACGATCCGGTTATGTCGGCTCCATGGACGACGGGTCTGGGCAGGGCTAT
ATCCGGTGAGATGGTAGAC-GTGGTGATGTGCTCCATCTCGATGTTGGTCGGTGTGGTGACCACTGCGGTAGCGGTCGTG
CCGCGAATTGTGGTCCCACCAAAAGGT
>chr4D_294
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-----------------------------------------------------TTTTTTAAGACCGAAGACGCTCTTCAA
AAAAGACATGCGCGTGGTGTTAGCTACACAGCCTTCCTTCCTTTCC----TCCACACGCGCTCAAGAACGTAAGGTGGAT
CGAACAGTCACGCGCGTGGTGTGTTGCACAAGCAGCTTTCCTTGCGAAAGATACTACAAACTCGGCCACAAAAAATTCTG
ACGCCACGAGGGATCTCACACCGAAAGCGACGGCCAGAGCTCGTACCGGCGACCGACCGGTGATGTCAGCCTACACGTCT
TCCCGATTGGACCGGTCCAACCAAGCGCCGAAAACCGGTGGCCCCACGCTCGGCTCCTTGCCCTCCAAGCTTTCTCTCAC
CTCAAATCGCAAATCAAACCAAATTAAATACTCACATCACCCGCGTTGACATAGCAATCCCGAAAAAACCTAGTGCACCA
CCTCCACGAAACACC-GTGTCCCGGTGGGAATCTGCCAGATCAAAACGTGAGATACAGATATACAGCAGTCCGTAGACGA
GGTCCACGAATAGCCCT-------------AGAATTCTATTCCGCCGCCTATAAATACGGGCCTCCTCTCCTCTCCAAAC
CAAAATAGCCTCCCAGCCCCCTCTGCCTCCCCAAAAAACAAACAAACAGAGGTCGCGCTTCCGATCTAGCTCTGCGGCTG
TCACGAGGCTCCCCATTTCCCTCCCCGCAGCGCCGAAGCAAGCATGTGTCCCGGCGGCAGGTACGCGGGCCTTGACCTCC
CCGCCGGCGCCGGCGCGGGGGACCTGCGGCCGGCGTTCGACGTGCTGGACGCGGACCACGACGGCCGCATCAGCCGCGAC
GACCTCAAGACCTTCTACGCCAACGCCGGCGCCACCGACGAGCGCTTCGACGACGACGACATCGAGGCCATGATCGCCGC
CGCCGACGCCGACCTCGACGGCTTCGTGCAGTACCACGAGTTCGAGGGCCTCCTTGGCCGCGCAGCTAAGGCGGGGGCGG
ACAGCGGCTGCCGCTCCGCGATGGAGGACGCCTTCCGGCTAATGGACCGCGACGGGGACGGCAAGGTCGGGTTCGAGGAC
CTCAAGGCCTACCTCGGGTGGGCCGGGATGCCGGTCGCCGACGACGAGATCCGCGCCATGATAAGTATGGCTGCTGACGA
CGACGGCGGCGTGGGGCTCGAGGCGCTCGCCAGAATACTCGCCGTGGACTTTGATGCCATCGTCTGAAGAATCTAAAATA
ATTCGACTGTAAAGCACTAGACTTGATTTTTTGGGACTTTTCCCCCCTAAAATTTGGTTGGTGGGGAGAGCAGGCTGGCG
TGAGATTGATTGTTGTAAGTGGTTCTCGTTAACCGTGAGTTTTGAATGTATCGTAGCTGTTACCCATAAAATCG----AA
TCTTTGAGAAACATAAAAGATACTATGCGTGTATCCTTGGAAACTTAAACAAGTGCTCTACCCTCCTGCAGGTCATT---
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-------------------------------ATACTCTCTCTATTACACAACATAATGACAAAATCTAAATTTAACCATA
AATTTAGTCAACAAGACCCATTGCGGCGG-AGTAAAAATTATACCACTAAATTCGTATTTTCAAACTTAGATTTCAGAAA
ACA-----GCACTACATTGTGGAACGGAAGGAGAATATTACTAGCAGG-AGAGGTCCCTTGTGCGTGGCTGCTTTATTTT
TTAT-----ATAAGAAAAGAAGACAGTGGGTATACCTGGCCATGGGCCGGGCCTAAAAAAGCCCACGGCAGAAAACTGAG
GCCCAGTCCCTCCAGGCCCTACCATCGGGCCTACTTTTCAAGCCCAAGCCCGGCCCATTTAATAAAAAGCCCTGAAAAGC
CCTTAGGGCTTAGGGCCGTGGGCCGGGCCTCTTCCTTAAAATGCCAATATGCCAAGTCCAAGCCCGTCCAGGCCCTGCTG
GTGGGCTCAAAACTCAGGCCCAAGCCCGGCCCACAGGCAAGCCCATCGGGCCTAGGCCCTGGATTTTAGGGCTGGGCCTG
GGTGGGCCGACAGGGCCGGGCCGGAGATGGCCAGAACTAACAGTGGGTAAGTAACCAATTTAACTCAGATAAATACCGCT
ACC----AAAAATCAGTTCACCCATGGTTACAAACACTTAGCCACTCCGGAGGC------CGCAGTCGCAGCCGCGCCTA
GCCTTCGCCTCCGCTACTCCCTCCTTCATCGTCATCGTCTGAGGTCGTCTAGCAAAGCCCAGCGGTGCACAATGGTGGCG
AGAACGTGCACTGCCTCACCTTGGTGCCTCGGATCCAAGGTACCGGAGTCGCCATCTCCTTTC-----------------
------GACGGTTTCTCGCACTCGTCGCCGCCATGGGGAGGCCCCAGATGGATCTGACGTGGATGTTGCGGCTAGGCGGG
TGGCGGCTCAACTGACTGATCTACCTTGCTCATGATCCGGTTATGTCGGCTCCTTGGCCGACGAGTCTGGGCAGGGCTAT
CTCTAGTGAGATGGTAGACGGTGGTGATGTGCTCCGTCTCGGTGTTGGTCGGT---------------------------
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>chr4B_346
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-------------------------ACACAGCCTTCCTTCCTTTCC----TTCACACGCGCTCAGGAACGTAAGGTGGAA
CGAACAGTCACGCGCGTGGTGT--TGCACAAGCAGCTTTCCTTGCGAAAGATACTACAAACTCGGCCACAAAAAATTCTG
ACGCCACGAGGGATCTCACACCGAAAGCGACGGCCAGAGCTCGTACCGGCGACCGACCGGTGATGTCAGCCTACACGTCT
TCCCGATTGGACCGGTCCAACCAAGCGCTGAAAACCTGTGGCCCCACGCTCGGCTCCTTGCCCTCCAAGCTTTCTCTCAC
CTCAAATCGCAAATCAAACCAAATTAAATACTCACATCACCCGCGTTGACACAGCAATCCCGAAAAAACCCAGTGCACCA
CCTCCACGAAACACCCGTGTCCCGGTGGGAATCTGCCAGATCAAAACGTGAGATACAGATATACAGCAGTCCGTAGACGA
GGTCCACGAATAGCCCTCCTAGCCAGCTGGAGAATTCTATTCCGCCGCCTATAAATACGGGCCTCCTCTCCTCTCCAAAC
CAAAATAGCCTCCCAGCCCTCTCCGCCTCCCGAAAATACAAACAAACAGAGATCGCGCTTCCGATCTAGCTCTGCGGCTG
TCGCGAGGCTCCCC-TTTCCCTCCCCGCAGCGCCGAAGCAAGCATGTGTCCCGGCGGCAGGTACGCGGGCCTTGACCTCC
CCGCCGCCGCCGGCGCGGGGAACCTGCGGCCGGCGTTCGACGTGCTGGACGCGGACCACGACGGCCGCATCAGCCGCGAC
GACCTCAAGACCTTCTACGCCAACGCCGGCGCCACCGACGAGCGCTTCGACGACGACGACATCGAGGCCATGATCGCCGC
CGCCGACGCCGACCTCGACGGCTTCGTGCAGTACCACGAGTTCGAGGGCCTCCTTGGCCGCGCAGCTAAGGCGGGGGCGG
ACAGCGGCTGCCGCTCCGCGATGGAGGACGCCTTCCGGCTAATGGACCGCGACGGGGACGGCAAGGTCGGGTTCGAGGAC
CTCAAGGCCTACCTCGGGTGGGCCGGGATGCCGGTCGCCGACGACGAGATCCGCGCCATGATAAGTATGGCTGCTGACGG
CGACGGCGGCGTGGGGCTCGAGGCGCTCGCCAGAATACTCGCCGTGGACTTTGATGCCATCGTCTGAAGAATCTAAAATA
ATCCGACTGTAAAGCACTAGACTTGATTTTTTGGGAATTTCCCCCCCTAAAATTTGGTTGGTGAGGAGAGCAGGCTGGCG
TGAGATTGATTGTTGTGAGTGGTTCTCGTTAACCGTGAGTTTTGAATGTATCGTAGCTGTTACCCATAAAAAATCGAAAA
TCTTTGAGAAACAT-AAAAATACTATGCGTGTATCCTTGGAAACTTAAACAAGTGCTCTACTCTCCTGCAGGTCATAAGA
GCAACTCCAACGGGCCGACCCAAACGGACGGCGATTTTGTCCGCTTTTTATCCGTTTGCGTCGGCCAGGCGAACGTGCGT
GTTCGCATTTTAAAATGGGTCGGCTTGACCATCCAACGAGGAGGCCAACCTAAATATGCCGGCGTGAAAAAAAAACAAGT
CCACCTAAATCTAATAAACATTAAATAAAACATTAAAAAAAGTATGCGCTCGCCTGCTGCCGCCCCGCACGCTGCCCTAG
ACGTCGTCGGCCTTGCCCTTGCCCTTGTCCTCAACGCCGTCGTCGTCAGTGAGGTCGATAAAGACTGGAGCAGGGCCAGC
CCACCCGAACGCCGCCTGGTACGCTGCCAGGGTAGCCTCCTCCGGCGTCTGCTGGGGCGGCGGCATTGCGGCAAGCCGCG
CGCGCTCCTCCTCCTCCTCCTCTAGACGGAGCGCCTCCGCGTCGCGTTCGAGCATGGCGTCGTAGCGCATCTGCTCCTCG
CCGTCGGCCTGCTCCTGGTGGAGCCGGTGCTCCTTCCATCACTCGAGGTGGGCCGCCTCCTCCTCCGGCGTGGCGGCGAA
GTGGACGGGAGGCGCGCTGACCCACTCGCGGTACTGGCCCGTCCATGAGTAGGCCTCCTCCGGCCAAGTGGGTGGAGGCG
GGGAGCGCTTACGCGACGGCTCCGGCTCCGGCTGGATGGGCGGCGACGGTGGAGGCAGCGACACGAAGAGTGGGGAGTGG
ACGGAGTCCCCAGCCGCCGACAGGGCAAGGGCTTGTTCCAGCCCATCCCAGTGCGCGTCCTCATCGATGCGGCTAGCCTC
CAGCGTGTGTTGCAGGGCCTCCTCGAGGGCGGCTTGGTACTCCGCCTCCGCCTCCATGTCCTCCGGCTCTACCTCCGGGG
GCGGCGGTGGGAACGGCGGCGGGACGGCATTGACACCCGAGCGTCGTTGCTCCTCGTGTTCGAGGGCGAACCAAGCCTCC
CAGTTGGGAGAGTCGGCGGCGTACTCGGGGAGCCAACGCTGCTCCGGCGTGAGCAGCGCGGCGCCAGCGCACCTCGTCGT
CGTGGGCCCGCTGGGTCCGTGGAACCGCCAGCACCTGGATCCGGTTTGGATCCAAATGCCAATGGTGCGGCAACGTCACG
TCGGGGTAGGGGAGGGGCTGCCTGTACTCCCAGTGCCACCGCGCTTGGTGCACCGGGATGTGCAGGCGCCGGCGCTCAGG
GTGAAAACGCGCCGGCGGTGGAGGGGGAGGGGGAGCATGGAACGACGAGGAGCCGGGGGTGCCCTTGACCTTGCCCTTGC
TGCTGTCGAAGAGGCACATGGGTGCGCTAGGGTTTGCGGTCGTCGGCGAGGAAGCAAAGGGAGTGGCGGGGGCCAGATGT
GAACGGGAGAAGTGGATGAGGCCGACCCCGCCACACGCGTGGTTAAAAAAGGACGCACACACTGGCTGACACGTGGGCCC
GCTGTCGGTGGTCGTCATAAATAAGACGACCGGTGGCGGTTGGGTGGCCGCCAGGTAGGGACGCGGCGGACGGCGAGGAG
ACGCGCGGCGCGTCCTCTTCGCGTCCGCACCGACGCATTCCAGGCGCAAATTTGGGCCGCAAATGCGTCGGCGCGGACGC
GACTCGGACGTGATATGAGTTTGGGTCGGCGCGTTGGGCCACCACTTTTGTCCGCGCCGACCCAAACGGACGCGGGCAGA
CGAAATGGGTCGCCCCATTGGAGTTGCTCTAATACTCTCTCCATTACACAACATAGTTACGAGATCTAAATTTAACCATA
AATTTAGTCAACAAGAC--------GCGG-AGCAAAAATTATACCATTAAATTCGTATTTTCAAACTTAAATTTCAGGAA
ACACGGGCGCACTACATTGTAAAACGGAGGGAGTATATTACTAGCAGGCAGAGGTCCCTTGTGCATGGCTGCTTTATTTT
TTATTTTATATAAGAAAATAAGACAG------------------------------------------------------
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-------------------------------------------TGGGTAAGCAACCAATTTAACTCAGATAAATAACGCT
ATC----AAAATCCAGTTCACCCATGGTTACAAACACTTAGCCACTCCGGAGGCCGCAGTCGCAGTCGCAGTCGCGCCTA
GCCTTCGCCTCCGCTACTCCCTCCTTCATCGTCATCGTCGGAGGTCCTCTAGCAAAGCCCAGCGGTGCACAATGGTGGCG
AGAACGTGCACTGCCTCACCTTGGTGCGTCGGATCCAAGGTACCGGAGTCGCCATCTCCTTTC-----------------
------GACGACTTCTCGCACTCATCGCCGCCATGGGGAGGCCCTAGATGGATCCGATGTGGATGTTGCGGCTAGGAGGG
TGGCGGCTCAACTGTCTGATCTACCTTGCTCATGATCCGGTTATGTCGGCTCCTTGGCTGACGAGTCTGGGCAGGGCTAT
CTCTAGTGAGATGGTAGACGTTGGTGATGTGCTCCATCTCGGTGTTGGTCGGTATGGTGACCATTGCGGCGGCGGCCGTG
CCGCAAATTGTGGGGCCACCAAAAGGT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------
---S---------------------------------------S-SSSSS------------------------------
---------------------------------------------------------------S----------------
---------S----------------------------------------------------------------------
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---------S------------------------S-------------------S----S---S----------------
------------------------------------S--------------------------------S----------
--------------------S----------------------------------------------------S------
-S------------------------------------------------------------S-----------------
------------S-------------------------S-----------------------------------------
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--------------------------S------------------------------------------------S----
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----------------S---------------------------------------------------------------
-------------------------------------------------------------------------S------
----S---------------------------------------------------------------------------
----S------------------------------------S--------------------------------------
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--------------S------------------------------------------------S--------------S-
SSSSS--SSS-SSSSS-SSSSSSSSSS-S-SSSS----------------------------------------------
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-------------------------------------------------------------------------S-S----
------------------S-S--S-----S-------------S----S---------------------------S---
-SS----S----------SS----SS---S------S-S-------S------SS--SS---------------------
-------------------------S------------------------------------------------------
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---------------------------------------------------------------------------S--SS
-S-SSSS----------------------------------------S--------------------------------
---------------------------SS-------S---S-S-----------------S---SS------------S-
-----S-----------------------------------S---------------S----SSSSSSSSSSSSSSSSSS
SSSSSS---------------------------------------S------------S-------S-------------
S-S-S----S----------------------S--------------------S---S-----S----------------
S--SS------------------------------------S-----------S---------S-----SS----S----
----S--------SS------------
>forward_943
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-------------------------------------------AAACAGAGATCGCGCTTCCA-----------------
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>reverse_4484
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---CGGTGAGATGGTAGACGTGG---------------------------------------------------------
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