Multiple sequence alignment - TraesCS4A01G120900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G120900 chr4A 100.000 4266 0 0 1 4266 149034972 149039237 0.000000e+00 7878.0
1 TraesCS4A01G120900 chr4A 94.118 51 3 0 3132 3182 149038052 149038102 1.270000e-10 78.7
2 TraesCS4A01G120900 chr4A 94.118 51 3 0 3081 3131 149038103 149038153 1.270000e-10 78.7
3 TraesCS4A01G120900 chr4B 88.845 3048 198 56 139 3131 403265822 403262862 0.000000e+00 3615.0
4 TraesCS4A01G120900 chr4B 83.592 451 47 14 3453 3884 403262634 403262192 8.590000e-107 398.0
5 TraesCS4A01G120900 chr4B 88.380 284 12 6 3144 3422 403262900 403262633 5.320000e-84 322.0
6 TraesCS4A01G120900 chr4B 88.278 273 25 6 1 269 403268150 403267881 1.910000e-83 320.0
7 TraesCS4A01G120900 chr4B 93.264 193 3 3 4084 4266 403262016 403261824 4.200000e-70 276.0
8 TraesCS4A01G120900 chr4B 80.159 126 24 1 332 456 377383828 377383953 4.540000e-15 93.5
9 TraesCS4A01G120900 chr4D 89.802 2118 115 36 1 2063 323111544 323109473 0.000000e+00 2621.0
10 TraesCS4A01G120900 chr4D 93.960 1010 57 2 2126 3131 323109466 323108457 0.000000e+00 1524.0
11 TraesCS4A01G120900 chr4D 83.949 785 70 27 3144 3884 323108495 323107723 0.000000e+00 701.0
12 TraesCS4A01G120900 chr4D 95.082 183 6 2 4084 4266 323107523 323107344 6.980000e-73 285.0
13 TraesCS4A01G120900 chr2B 78.439 269 39 17 16 275 390812888 390812630 1.590000e-34 158.0
14 TraesCS4A01G120900 chr3B 85.185 135 18 2 137 269 143514215 143514081 2.070000e-28 137.0
15 TraesCS4A01G120900 chr7D 84.444 135 19 2 137 269 568374262 568374396 9.630000e-27 132.0
16 TraesCS4A01G120900 chr7D 82.517 143 21 4 136 275 117393943 117393802 5.790000e-24 122.0
17 TraesCS4A01G120900 chr5A 82.517 143 20 4 137 276 46713633 46713773 2.080000e-23 121.0
18 TraesCS4A01G120900 chr1A 83.459 133 18 4 140 269 305605804 305605935 2.080000e-23 121.0
19 TraesCS4A01G120900 chr6B 75.379 264 47 13 30 284 630503147 630503401 1.250000e-20 111.0
20 TraesCS4A01G120900 chr7A 82.203 118 14 6 28 140 543071883 543071998 1.260000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G120900 chr4A 149034972 149039237 4265 False 2678.466667 7878 96.078667 1 4266 3 chr4A.!!$F1 4265
1 TraesCS4A01G120900 chr4B 403261824 403268150 6326 True 986.200000 3615 88.471800 1 4266 5 chr4B.!!$R1 4265
2 TraesCS4A01G120900 chr4D 323107344 323111544 4200 True 1282.750000 2621 90.698250 1 4266 4 chr4D.!!$R1 4265

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
931 3182 0.252742 TCTTCCCCACTTCCTCCTCC 60.253 60.0 0.0 0.0 0.00 4.30 F
1920 4228 0.179000 CCTGGAGACCGATTCCCTTG 59.821 60.0 0.0 0.0 33.62 3.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2895 5207 0.034863 GGTTCCGAATAAGGTGCCCA 60.035 55.0 0.0 0.0 0.00 5.36 R
3664 6004 0.040958 CGAGGTGTGAAGCAAACTGC 60.041 55.0 0.0 0.0 45.46 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.244292 AGTCTAGTGTCACAGAGAATATACAAA 57.756 33.333 5.62 0.00 0.00 2.83
62 63 4.563184 AGTGTTGAGAAATTATCGACTCGC 59.437 41.667 9.14 1.15 33.04 5.03
73 74 1.076533 TCGACTCGCTCAAAATCGGC 61.077 55.000 0.00 0.00 33.66 5.54
80 81 0.678048 GCTCAAAATCGGCTGACCCT 60.678 55.000 0.00 0.00 0.00 4.34
81 82 1.826385 CTCAAAATCGGCTGACCCTT 58.174 50.000 0.00 0.00 0.00 3.95
97 101 5.560724 TGACCCTTCAATTAAAGACCTCAG 58.439 41.667 0.00 0.00 0.00 3.35
108 112 8.352201 CAATTAAAGACCTCAGTTGAATGTTGA 58.648 33.333 0.00 0.00 0.00 3.18
111 115 4.384056 AGACCTCAGTTGAATGTTGACTG 58.616 43.478 0.00 0.00 41.57 3.51
127 131 6.891388 TGTTGACTGTTTAAAACTAGGGAGA 58.109 36.000 0.00 0.00 0.00 3.71
171 176 4.739046 AAAAGCATTGAACGAGAGAGTG 57.261 40.909 0.00 0.00 0.00 3.51
172 177 3.393089 AAGCATTGAACGAGAGAGTGT 57.607 42.857 0.00 0.00 0.00 3.55
173 178 3.393089 AGCATTGAACGAGAGAGTGTT 57.607 42.857 0.00 0.00 0.00 3.32
190 195 6.513180 AGAGTGTTAGAAATTGTTGACTCGA 58.487 36.000 0.00 0.00 34.96 4.04
239 244 6.957920 TTGAAGACCTCAATTGAATGTTGA 57.042 33.333 9.88 0.00 39.20 3.18
277 2473 9.944079 AGGGAGCATAGTGTTATATATGATACT 57.056 33.333 10.94 10.94 30.86 2.12
339 2536 7.962964 TTACATTCGATCACACTTTTTCTCT 57.037 32.000 0.00 0.00 0.00 3.10
347 2544 4.260985 TCACACTTTTTCTCTCAAGCACA 58.739 39.130 0.00 0.00 0.00 4.57
350 2547 4.641989 ACACTTTTTCTCTCAAGCACATGT 59.358 37.500 0.00 0.00 0.00 3.21
391 2588 5.222254 TGCTTCCCTATCCAAACCTACTTTT 60.222 40.000 0.00 0.00 0.00 2.27
401 2598 6.601332 TCCAAACCTACTTTTTCTGACATCT 58.399 36.000 0.00 0.00 0.00 2.90
402 2599 7.060421 TCCAAACCTACTTTTTCTGACATCTT 58.940 34.615 0.00 0.00 0.00 2.40
446 2643 5.471116 GCATCACCATAAGACTATGCATTGA 59.529 40.000 15.23 4.06 39.53 2.57
448 2645 6.239217 TCACCATAAGACTATGCATTGACT 57.761 37.500 15.23 11.00 34.62 3.41
469 2666 6.044989 TGACTATGCCCTAATAATTGGCCTAA 59.955 38.462 3.32 0.00 44.72 2.69
632 2853 3.004752 AGTCTTTGACACAGTGGCTTT 57.995 42.857 8.21 0.00 34.60 3.51
640 2861 5.181690 TGACACAGTGGCTTTTGAAATAC 57.818 39.130 8.21 0.00 0.00 1.89
654 2875 9.076596 GCTTTTGAAATACGAGCTCAAAATAAT 57.923 29.630 15.40 0.00 44.04 1.28
711 2950 6.090358 TGACGCAGCTTTAGTACAATTTAGAC 59.910 38.462 0.00 0.00 0.00 2.59
931 3182 0.252742 TCTTCCCCACTTCCTCCTCC 60.253 60.000 0.00 0.00 0.00 4.30
932 3183 0.252927 CTTCCCCACTTCCTCCTCCT 60.253 60.000 0.00 0.00 0.00 3.69
933 3184 0.252742 TTCCCCACTTCCTCCTCCTC 60.253 60.000 0.00 0.00 0.00 3.71
970 3221 0.463474 GAGATCCTTGGTCTGCTGCC 60.463 60.000 0.00 0.00 0.00 4.85
1169 3421 2.060004 CTTCGTAGAGCGGCGGATCA 62.060 60.000 9.78 0.00 41.72 2.92
1240 3492 1.157513 GATTTTGGGTGGTGGGGGT 59.842 57.895 0.00 0.00 0.00 4.95
1252 3504 1.546998 GGTGGGGGTTGTTTCCTAGTG 60.547 57.143 0.00 0.00 0.00 2.74
1253 3505 1.422402 GTGGGGGTTGTTTCCTAGTGA 59.578 52.381 0.00 0.00 0.00 3.41
1254 3506 2.136863 TGGGGGTTGTTTCCTAGTGAA 58.863 47.619 0.00 0.00 0.00 3.18
1327 3580 3.511146 TGGGTTTCTAGACGACGGTAATT 59.489 43.478 0.00 0.00 0.00 1.40
1450 3732 3.487574 GCCATAGATTTCGAGTGAAGTCG 59.512 47.826 1.02 1.02 43.46 4.18
1456 3743 4.940046 AGATTTCGAGTGAAGTCGGTACTA 59.060 41.667 7.64 0.00 43.46 1.82
1471 3758 7.095270 AGTCGGTACTAACTTGTTAAGGATTG 58.905 38.462 0.00 0.00 32.84 2.67
1472 3759 7.039504 AGTCGGTACTAACTTGTTAAGGATTGA 60.040 37.037 0.00 0.00 32.84 2.57
1473 3760 7.763071 GTCGGTACTAACTTGTTAAGGATTGAT 59.237 37.037 0.00 0.00 0.00 2.57
1474 3761 8.316214 TCGGTACTAACTTGTTAAGGATTGATT 58.684 33.333 0.00 0.00 0.00 2.57
1475 3762 8.388103 CGGTACTAACTTGTTAAGGATTGATTG 58.612 37.037 0.00 0.00 0.00 2.67
1476 3763 8.182227 GGTACTAACTTGTTAAGGATTGATTGC 58.818 37.037 0.00 0.00 0.00 3.56
1598 3889 9.234827 TCATACTGATTGATTCATGAAAACACT 57.765 29.630 13.09 9.92 32.72 3.55
1648 3949 4.729918 AGGGCTTGAAGGCAGCGG 62.730 66.667 20.63 0.00 43.44 5.52
1650 3951 3.741476 GGCTTGAAGGCAGCGGTG 61.741 66.667 14.34 10.98 40.97 4.94
1726 4027 9.537192 TCAGTTATATCGTTGTATTTAACTGGG 57.463 33.333 18.55 4.22 43.80 4.45
1877 4185 7.924412 ATGGATGCAATTCATCATGTAAGTTTC 59.076 33.333 15.30 0.00 38.47 2.78
1880 4188 8.922058 ATGCAATTCATCATGTAAGTTTCTTC 57.078 30.769 0.00 0.00 0.00 2.87
1881 4189 7.022979 TGCAATTCATCATGTAAGTTTCTTCG 58.977 34.615 0.00 0.00 0.00 3.79
1882 4190 7.094848 TGCAATTCATCATGTAAGTTTCTTCGA 60.095 33.333 0.00 0.00 0.00 3.71
1894 4202 5.630415 AGTTTCTTCGATGGGATGGATAA 57.370 39.130 0.00 0.00 0.00 1.75
1920 4228 0.179000 CCTGGAGACCGATTCCCTTG 59.821 60.000 0.00 0.00 33.62 3.61
1966 4274 1.662438 GCTCTGGACCTGTCGGAGAG 61.662 65.000 17.20 16.36 38.70 3.20
2000 4308 1.703411 AGGAGCTCAGGAGTAGCATC 58.297 55.000 17.19 0.00 42.62 3.91
2005 4314 4.100189 GGAGCTCAGGAGTAGCATCTTTTA 59.900 45.833 17.19 0.00 42.62 1.52
2014 4323 8.031277 CAGGAGTAGCATCTTTTATTTTGCTTT 58.969 33.333 1.22 0.00 42.52 3.51
2021 4330 9.275398 AGCATCTTTTATTTTGCTTTCATTTGA 57.725 25.926 0.00 0.00 42.52 2.69
2102 4411 3.181451 TGCAGCTAAGGATTGTATCAGGG 60.181 47.826 0.00 0.00 0.00 4.45
2110 4419 5.937492 AGGATTGTATCAGGGATTTGGAT 57.063 39.130 0.00 0.00 0.00 3.41
2113 4422 5.474876 GGATTGTATCAGGGATTTGGATGAC 59.525 44.000 0.00 0.00 0.00 3.06
2120 4429 3.885297 CAGGGATTTGGATGACCATGTAC 59.115 47.826 0.00 0.00 46.34 2.90
2195 4504 2.223611 GCTATGTGCTCATGCTGATGTC 59.776 50.000 11.46 0.00 40.48 3.06
2279 4588 7.510549 TGAGTCTTACATTCTTTTGGAAAGG 57.489 36.000 1.04 0.00 37.49 3.11
2311 4620 4.201950 GCCCTGTTGCTAAGTTGACATATG 60.202 45.833 0.00 0.00 0.00 1.78
2325 4634 2.490903 GACATATGGGCAAGCCATGATC 59.509 50.000 13.87 5.40 37.98 2.92
2341 4650 4.261322 CCATGATCTTGTAGAAAATGGCCG 60.261 45.833 0.00 0.00 35.70 6.13
2342 4651 3.950397 TGATCTTGTAGAAAATGGCCGT 58.050 40.909 0.00 0.00 0.00 5.68
2354 4663 7.404671 AGAAAATGGCCGTATTGTAAGAATT 57.595 32.000 0.00 0.00 0.00 2.17
2462 4773 9.784680 CTGATGATTTCATTTTGGAGAAGTAAG 57.215 33.333 0.00 0.00 36.57 2.34
2488 4800 7.855904 GCCGGATGTATGTCTTTGTAAATTAAG 59.144 37.037 5.05 0.00 0.00 1.85
2599 4911 2.596904 ACTGTTTCGATATGGGGTCG 57.403 50.000 0.00 0.00 40.30 4.79
2653 4965 3.814842 TGAAGCTGTATGTGAACAACCTG 59.185 43.478 0.00 0.00 0.00 4.00
2673 4985 2.145053 CGAAGCGCACACATAGAAAC 57.855 50.000 11.47 0.00 0.00 2.78
2718 5030 0.730494 GCGTTGGCTGATGCTTTGAC 60.730 55.000 0.00 0.00 39.59 3.18
2726 5038 2.434428 CTGATGCTTTGACAGAAGGCT 58.566 47.619 0.00 0.00 34.07 4.58
2734 5046 1.722034 TGACAGAAGGCTTGAGTCCT 58.278 50.000 19.87 3.42 34.90 3.85
2762 5074 0.399454 AGCCAAGCAAGCTCAGAAGA 59.601 50.000 0.00 0.00 34.91 2.87
2829 5141 2.065899 TTGGGGCCGATAATTTCCTG 57.934 50.000 0.00 0.00 0.00 3.86
2881 5193 3.540211 CGGAAGCATGACAGAAGGT 57.460 52.632 0.00 0.00 0.00 3.50
2884 5196 2.160417 CGGAAGCATGACAGAAGGTTTC 59.840 50.000 0.00 0.00 0.00 2.78
2887 5199 3.064900 AGCATGACAGAAGGTTTCCTC 57.935 47.619 0.00 0.00 30.89 3.71
2895 5207 2.211468 GAAGGTTTCCTCCGGGGCAT 62.211 60.000 0.00 0.00 30.89 4.40
3019 5331 4.282195 GGAAGAATCGGACTGATGGTCTAT 59.718 45.833 0.00 0.00 43.97 1.98
3073 5385 2.496470 GTTTGTCCGTCCAGAGGAGTAT 59.504 50.000 0.00 0.00 38.65 2.12
3088 5400 7.415095 CCAGAGGAGTATCGATCATCATCTTAC 60.415 44.444 18.82 3.29 30.96 2.34
3089 5401 6.315144 AGAGGAGTATCGATCATCATCTTACG 59.685 42.308 16.75 0.00 29.11 3.18
3090 5402 5.031578 GGAGTATCGATCATCATCTTACGC 58.968 45.833 0.00 0.00 34.37 4.42
3091 5403 5.392057 GGAGTATCGATCATCATCTTACGCA 60.392 44.000 0.00 0.00 34.37 5.24
3093 5405 2.666026 TCGATCATCATCTTACGCAGC 58.334 47.619 0.00 0.00 0.00 5.25
3094 5406 2.034558 TCGATCATCATCTTACGCAGCA 59.965 45.455 0.00 0.00 0.00 4.41
3095 5407 2.407696 CGATCATCATCTTACGCAGCAG 59.592 50.000 0.00 0.00 0.00 4.24
3096 5408 3.646946 GATCATCATCTTACGCAGCAGA 58.353 45.455 0.00 0.00 0.00 4.26
3097 5409 3.525268 TCATCATCTTACGCAGCAGAA 57.475 42.857 0.00 0.00 0.00 3.02
3098 5410 3.451526 TCATCATCTTACGCAGCAGAAG 58.548 45.455 0.00 0.00 0.00 2.85
3099 5411 3.131046 TCATCATCTTACGCAGCAGAAGA 59.869 43.478 8.14 8.14 33.90 2.87
3100 5412 3.156511 TCATCTTACGCAGCAGAAGAG 57.843 47.619 10.82 4.99 32.94 2.85
3101 5413 2.159184 TCATCTTACGCAGCAGAAGAGG 60.159 50.000 10.37 10.37 32.94 3.69
3102 5414 0.532573 TCTTACGCAGCAGAAGAGGG 59.467 55.000 2.44 0.00 0.00 4.30
3103 5415 1.079127 TTACGCAGCAGAAGAGGGC 60.079 57.895 0.00 0.00 0.00 5.19
3104 5416 1.544825 TTACGCAGCAGAAGAGGGCT 61.545 55.000 0.00 0.00 42.06 5.19
3105 5417 1.949847 TACGCAGCAGAAGAGGGCTC 61.950 60.000 0.00 0.00 38.56 4.70
3106 5418 2.667418 GCAGCAGAAGAGGGCTCA 59.333 61.111 0.00 0.00 38.56 4.26
3107 5419 1.449956 GCAGCAGAAGAGGGCTCAG 60.450 63.158 0.00 0.00 38.56 3.35
3108 5420 1.897225 GCAGCAGAAGAGGGCTCAGA 61.897 60.000 0.00 0.00 38.56 3.27
3109 5421 0.176219 CAGCAGAAGAGGGCTCAGAG 59.824 60.000 0.00 0.00 38.56 3.35
3110 5422 0.252193 AGCAGAAGAGGGCTCAGAGT 60.252 55.000 0.00 0.00 34.76 3.24
3111 5423 1.006519 AGCAGAAGAGGGCTCAGAGTA 59.993 52.381 0.00 0.00 34.76 2.59
3112 5424 2.038659 GCAGAAGAGGGCTCAGAGTAT 58.961 52.381 0.00 0.00 0.00 2.12
3113 5425 2.224018 GCAGAAGAGGGCTCAGAGTATG 60.224 54.545 0.00 0.00 0.00 2.39
3114 5426 2.038659 AGAAGAGGGCTCAGAGTATGC 58.961 52.381 0.00 0.00 0.00 3.14
3115 5427 1.759445 GAAGAGGGCTCAGAGTATGCA 59.241 52.381 0.00 0.00 0.00 3.96
3116 5428 1.412079 AGAGGGCTCAGAGTATGCAG 58.588 55.000 0.00 0.00 0.00 4.41
3117 5429 1.063341 AGAGGGCTCAGAGTATGCAGA 60.063 52.381 0.00 0.00 0.00 4.26
3118 5430 1.969923 GAGGGCTCAGAGTATGCAGAT 59.030 52.381 0.00 0.00 0.00 2.90
3119 5431 3.161067 GAGGGCTCAGAGTATGCAGATA 58.839 50.000 0.00 0.00 0.00 1.98
3120 5432 3.576118 GAGGGCTCAGAGTATGCAGATAA 59.424 47.826 0.00 0.00 0.00 1.75
3121 5433 3.323403 AGGGCTCAGAGTATGCAGATAAC 59.677 47.826 0.00 0.00 0.00 1.89
3122 5434 3.323403 GGGCTCAGAGTATGCAGATAACT 59.677 47.826 0.00 0.00 0.00 2.24
3123 5435 4.524714 GGGCTCAGAGTATGCAGATAACTA 59.475 45.833 0.00 0.00 0.00 2.24
3124 5436 5.465935 GGCTCAGAGTATGCAGATAACTAC 58.534 45.833 0.00 0.00 0.00 2.73
3125 5437 5.010112 GGCTCAGAGTATGCAGATAACTACA 59.990 44.000 0.00 0.00 0.00 2.74
3126 5438 6.148948 GCTCAGAGTATGCAGATAACTACAG 58.851 44.000 0.00 0.00 0.00 2.74
3127 5439 6.016693 GCTCAGAGTATGCAGATAACTACAGA 60.017 42.308 0.00 0.00 0.00 3.41
3128 5440 7.469318 GCTCAGAGTATGCAGATAACTACAGAA 60.469 40.741 0.00 0.00 0.00 3.02
3129 5441 7.935520 TCAGAGTATGCAGATAACTACAGAAG 58.064 38.462 0.00 0.00 0.00 2.85
3130 5442 7.558081 TCAGAGTATGCAGATAACTACAGAAGT 59.442 37.037 0.00 0.00 41.49 3.01
3132 5444 8.410141 AGAGTATGCAGATAACTACAGAAGTTC 58.590 37.037 0.00 0.00 45.64 3.01
3133 5445 7.197017 AGTATGCAGATAACTACAGAAGTTCG 58.803 38.462 0.00 0.00 45.64 3.95
3134 5446 5.386958 TGCAGATAACTACAGAAGTTCGT 57.613 39.130 0.00 1.71 45.64 3.85
3135 5447 5.399858 TGCAGATAACTACAGAAGTTCGTC 58.600 41.667 0.00 0.00 45.64 4.20
3136 5448 5.183331 TGCAGATAACTACAGAAGTTCGTCT 59.817 40.000 0.00 0.00 45.64 4.18
3137 5449 6.094061 GCAGATAACTACAGAAGTTCGTCTT 58.906 40.000 0.00 0.00 45.64 3.01
3138 5450 7.094506 TGCAGATAACTACAGAAGTTCGTCTTA 60.095 37.037 0.00 0.49 45.64 2.10
3139 5451 7.218583 GCAGATAACTACAGAAGTTCGTCTTAC 59.781 40.741 0.00 0.00 45.64 2.34
3140 5452 7.425882 CAGATAACTACAGAAGTTCGTCTTACG 59.574 40.741 0.00 0.00 45.64 3.18
3141 5453 5.429957 AACTACAGAAGTTCGTCTTACGT 57.570 39.130 0.00 0.00 45.64 3.57
3142 5454 6.545504 AACTACAGAAGTTCGTCTTACGTA 57.454 37.500 0.00 0.00 45.64 3.57
3182 5494 7.860373 CAGAGTATGCAGATAACTACAGAAGTC 59.140 40.741 0.00 0.00 37.50 3.01
3271 5586 3.698029 TTCAGCTTGTTCTGAAACTGC 57.302 42.857 3.96 0.00 46.56 4.40
3298 5613 2.364324 TGGATATCAGCCGACTTACACC 59.636 50.000 4.83 0.00 0.00 4.16
3323 5638 2.045634 TAGCAGGCCAGCAAGCAG 60.046 61.111 23.38 0.00 36.85 4.24
3424 5744 6.869421 ATAATAGAAACGTTTGCATGCAAC 57.131 33.333 31.99 23.55 35.46 4.17
3427 5747 1.257675 GAAACGTTTGCATGCAACCAC 59.742 47.619 31.99 25.52 35.46 4.16
3430 5750 2.028778 TTTGCATGCAACCACGGC 59.971 55.556 31.99 0.00 35.46 5.68
3432 5752 2.419057 TTTGCATGCAACCACGGCTC 62.419 55.000 31.99 0.00 35.46 4.70
3448 5768 0.107508 GCTCTGGCTGCATGGTCTAA 60.108 55.000 0.50 0.00 35.22 2.10
3451 5771 1.908619 TCTGGCTGCATGGTCTAAAGA 59.091 47.619 0.50 0.00 0.00 2.52
3452 5772 2.093288 TCTGGCTGCATGGTCTAAAGAG 60.093 50.000 0.50 0.00 0.00 2.85
3455 5781 2.158900 GGCTGCATGGTCTAAAGAGCTA 60.159 50.000 10.28 0.00 42.60 3.32
3461 5787 5.355071 TGCATGGTCTAAAGAGCTAAACATG 59.645 40.000 10.28 6.45 42.60 3.21
3480 5815 5.132502 ACATGAACAAAGAACACATCTGGA 58.867 37.500 0.00 0.00 38.79 3.86
3481 5816 5.240183 ACATGAACAAAGAACACATCTGGAG 59.760 40.000 0.00 0.00 38.79 3.86
3482 5817 4.780815 TGAACAAAGAACACATCTGGAGT 58.219 39.130 0.00 0.00 38.79 3.85
3483 5818 5.924356 TGAACAAAGAACACATCTGGAGTA 58.076 37.500 0.00 0.00 38.79 2.59
3505 5845 4.216411 TCTTGTAGCATACTTGGGGAAC 57.784 45.455 0.00 0.00 43.54 3.62
3535 5875 7.650104 GGTCTCTAGAGTGAATTTGCTGTATAC 59.350 40.741 19.21 4.35 0.00 1.47
3612 5952 8.566260 CCTTCATTTAGCAAGAATATCTTCAGG 58.434 37.037 0.00 0.00 33.78 3.86
3615 5955 9.857656 TCATTTAGCAAGAATATCTTCAGGATT 57.142 29.630 0.00 0.00 33.78 3.01
3664 6004 9.552114 TTTTTGACTTGTTGCACAATTTATTTG 57.448 25.926 0.00 0.00 37.48 2.32
3679 6019 5.964887 TTTATTTGCAGTTTGCTTCACAC 57.035 34.783 2.48 0.00 45.31 3.82
3689 6029 2.902705 TGCTTCACACCTCGTTAACT 57.097 45.000 3.71 0.00 0.00 2.24
3701 6041 8.838365 CACACCTCGTTAACTTATCTCTACTAT 58.162 37.037 3.71 0.00 0.00 2.12
3702 6042 9.054922 ACACCTCGTTAACTTATCTCTACTATC 57.945 37.037 3.71 0.00 0.00 2.08
3703 6043 9.053840 CACCTCGTTAACTTATCTCTACTATCA 57.946 37.037 3.71 0.00 0.00 2.15
3704 6044 9.624373 ACCTCGTTAACTTATCTCTACTATCAA 57.376 33.333 3.71 0.00 0.00 2.57
3717 6057 8.657387 TCTCTACTATCAATATCAAAGGGGAG 57.343 38.462 0.00 0.00 0.00 4.30
3718 6058 8.235230 TCTCTACTATCAATATCAAAGGGGAGT 58.765 37.037 0.00 0.00 0.00 3.85
3719 6059 8.423906 TCTACTATCAATATCAAAGGGGAGTC 57.576 38.462 0.00 0.00 0.00 3.36
3721 6061 9.535170 CTACTATCAATATCAAAGGGGAGTCTA 57.465 37.037 0.00 0.00 0.00 2.59
3722 6062 8.980832 ACTATCAATATCAAAGGGGAGTCTAT 57.019 34.615 0.00 0.00 0.00 1.98
3726 6066 8.423906 TCAATATCAAAGGGGAGTCTATAGTC 57.576 38.462 0.00 0.00 0.00 2.59
3728 6068 4.246712 TCAAAGGGGAGTCTATAGTCGT 57.753 45.455 0.00 0.00 0.00 4.34
3729 6069 4.205587 TCAAAGGGGAGTCTATAGTCGTC 58.794 47.826 0.00 0.00 0.00 4.20
3730 6070 2.547299 AGGGGAGTCTATAGTCGTCG 57.453 55.000 0.00 0.00 0.00 5.12
3732 6072 1.872313 GGGGAGTCTATAGTCGTCGTG 59.128 57.143 0.00 0.00 0.00 4.35
3733 6073 2.484417 GGGGAGTCTATAGTCGTCGTGA 60.484 54.545 0.00 0.00 0.00 4.35
3734 6074 3.401182 GGGAGTCTATAGTCGTCGTGAT 58.599 50.000 0.00 0.00 0.00 3.06
3735 6075 3.432933 GGGAGTCTATAGTCGTCGTGATC 59.567 52.174 0.00 0.00 0.00 2.92
3738 6078 4.059511 AGTCTATAGTCGTCGTGATCAGG 58.940 47.826 9.16 9.16 0.00 3.86
3740 6080 4.510711 GTCTATAGTCGTCGTGATCAGGAA 59.489 45.833 19.09 4.54 0.00 3.36
3744 6084 2.557056 AGTCGTCGTGATCAGGAAAAGA 59.443 45.455 19.09 15.22 0.00 2.52
3745 6085 3.193691 AGTCGTCGTGATCAGGAAAAGAT 59.806 43.478 19.09 3.13 0.00 2.40
3750 6101 5.577164 CGTCGTGATCAGGAAAAGATAAACT 59.423 40.000 19.09 0.00 0.00 2.66
3762 6141 4.855298 AAGATAAACTGGAATCCCGGAA 57.145 40.909 0.73 0.00 41.53 4.30
3778 6163 2.164219 CCGGAACCAATCATTTGTCCAG 59.836 50.000 0.00 0.00 30.82 3.86
3783 6168 3.831323 ACCAATCATTTGTCCAGTGTCA 58.169 40.909 0.00 0.00 0.00 3.58
3789 6174 2.116827 TTTGTCCAGTGTCACCGTTT 57.883 45.000 0.00 0.00 0.00 3.60
3836 6221 0.042188 CATCGCCGCATAAACTTCCG 60.042 55.000 0.00 0.00 0.00 4.30
3837 6222 1.157870 ATCGCCGCATAAACTTCCGG 61.158 55.000 0.00 0.00 43.38 5.14
3851 6236 3.272581 ACTTCCGGAAAAGTTTCGTGAA 58.727 40.909 19.39 0.00 36.02 3.18
3878 6263 3.583806 GATAGCATGACTCCATTCCGAG 58.416 50.000 0.00 0.00 35.88 4.63
3904 6305 2.166664 GTCGGAGCAGATTCCAGTTAGT 59.833 50.000 0.00 0.00 37.05 2.24
3907 6308 3.181471 CGGAGCAGATTCCAGTTAGTGAT 60.181 47.826 0.00 0.00 37.05 3.06
3908 6309 4.125703 GGAGCAGATTCCAGTTAGTGATG 58.874 47.826 0.00 0.00 37.20 3.07
3910 6311 3.521126 AGCAGATTCCAGTTAGTGATGGT 59.479 43.478 0.00 0.00 37.84 3.55
3911 6312 4.018960 AGCAGATTCCAGTTAGTGATGGTT 60.019 41.667 0.00 0.00 37.84 3.67
3913 6314 4.637534 CAGATTCCAGTTAGTGATGGTTGG 59.362 45.833 0.00 0.00 37.84 3.77
3914 6315 4.536090 AGATTCCAGTTAGTGATGGTTGGA 59.464 41.667 0.00 0.00 37.84 3.53
3915 6316 3.695830 TCCAGTTAGTGATGGTTGGAC 57.304 47.619 0.00 0.00 37.84 4.02
3916 6317 2.304761 TCCAGTTAGTGATGGTTGGACC 59.695 50.000 0.00 0.00 37.84 4.46
3917 6318 2.305927 CCAGTTAGTGATGGTTGGACCT 59.694 50.000 0.00 0.00 39.58 3.85
3918 6319 3.338249 CAGTTAGTGATGGTTGGACCTG 58.662 50.000 0.00 0.00 39.58 4.00
3920 6321 2.304761 GTTAGTGATGGTTGGACCTGGA 59.695 50.000 0.00 0.00 39.58 3.86
3921 6322 1.673767 AGTGATGGTTGGACCTGGAT 58.326 50.000 0.00 0.00 39.58 3.41
3923 6324 1.004745 GTGATGGTTGGACCTGGATGT 59.995 52.381 0.00 0.00 39.58 3.06
3924 6325 2.238646 GTGATGGTTGGACCTGGATGTA 59.761 50.000 0.00 0.00 39.58 2.29
3925 6326 2.238646 TGATGGTTGGACCTGGATGTAC 59.761 50.000 0.00 0.00 39.58 2.90
3926 6327 2.038863 TGGTTGGACCTGGATGTACT 57.961 50.000 0.00 0.00 39.58 2.73
3933 6334 3.137544 TGGACCTGGATGTACTTTGTTGT 59.862 43.478 0.00 0.00 0.00 3.32
3936 6337 5.278315 GGACCTGGATGTACTTTGTTGTTTC 60.278 44.000 0.00 0.00 0.00 2.78
3938 6339 6.597562 ACCTGGATGTACTTTGTTGTTTCTA 58.402 36.000 0.00 0.00 0.00 2.10
3939 6340 6.710744 ACCTGGATGTACTTTGTTGTTTCTAG 59.289 38.462 0.00 0.00 0.00 2.43
3940 6341 6.710744 CCTGGATGTACTTTGTTGTTTCTAGT 59.289 38.462 0.00 0.00 0.00 2.57
3941 6342 7.307989 CCTGGATGTACTTTGTTGTTTCTAGTG 60.308 40.741 0.00 0.00 0.00 2.74
3942 6343 7.051623 TGGATGTACTTTGTTGTTTCTAGTGT 58.948 34.615 0.00 0.00 0.00 3.55
3943 6344 7.554835 TGGATGTACTTTGTTGTTTCTAGTGTT 59.445 33.333 0.00 0.00 0.00 3.32
3944 6345 8.403236 GGATGTACTTTGTTGTTTCTAGTGTTT 58.597 33.333 0.00 0.00 0.00 2.83
3945 6346 9.783256 GATGTACTTTGTTGTTTCTAGTGTTTT 57.217 29.630 0.00 0.00 0.00 2.43
3962 6363 0.938713 TTTTTGTACTGCCACGACGG 59.061 50.000 0.00 0.00 38.11 4.79
3963 6364 0.104487 TTTTGTACTGCCACGACGGA 59.896 50.000 0.00 0.00 36.56 4.69
3964 6365 0.319083 TTTGTACTGCCACGACGGAT 59.681 50.000 0.00 0.00 36.56 4.18
3965 6366 0.389296 TTGTACTGCCACGACGGATG 60.389 55.000 0.00 0.00 36.56 3.51
3966 6367 1.245376 TGTACTGCCACGACGGATGA 61.245 55.000 0.00 0.00 36.56 2.92
3967 6368 0.102481 GTACTGCCACGACGGATGAT 59.898 55.000 0.00 0.00 36.56 2.45
3968 6369 0.102300 TACTGCCACGACGGATGATG 59.898 55.000 0.00 0.00 36.56 3.07
3969 6370 1.141665 CTGCCACGACGGATGATGA 59.858 57.895 0.00 0.00 36.56 2.92
3970 6371 0.460109 CTGCCACGACGGATGATGAA 60.460 55.000 0.00 0.00 36.56 2.57
3971 6372 0.739462 TGCCACGACGGATGATGAAC 60.739 55.000 0.00 0.00 36.56 3.18
3972 6373 0.739462 GCCACGACGGATGATGAACA 60.739 55.000 0.00 0.00 36.56 3.18
3973 6374 1.280982 CCACGACGGATGATGAACAG 58.719 55.000 0.00 0.00 36.56 3.16
3974 6375 1.280982 CACGACGGATGATGAACAGG 58.719 55.000 0.00 0.00 0.00 4.00
3975 6376 0.895530 ACGACGGATGATGAACAGGT 59.104 50.000 0.00 0.00 0.00 4.00
3976 6377 1.135083 ACGACGGATGATGAACAGGTC 60.135 52.381 0.00 0.00 0.00 3.85
3977 6378 1.135112 CGACGGATGATGAACAGGTCA 60.135 52.381 0.00 0.00 41.67 4.02
3978 6379 2.544685 GACGGATGATGAACAGGTCAG 58.455 52.381 0.00 0.00 40.43 3.51
3979 6380 2.166459 GACGGATGATGAACAGGTCAGA 59.834 50.000 0.00 0.00 40.43 3.27
3980 6381 2.567169 ACGGATGATGAACAGGTCAGAA 59.433 45.455 0.00 0.00 40.43 3.02
3981 6382 3.193263 CGGATGATGAACAGGTCAGAAG 58.807 50.000 0.00 0.00 40.43 2.85
3982 6383 3.368843 CGGATGATGAACAGGTCAGAAGT 60.369 47.826 0.00 0.00 40.43 3.01
3983 6384 4.583871 GGATGATGAACAGGTCAGAAGTT 58.416 43.478 0.00 0.00 40.43 2.66
3984 6385 5.006386 GGATGATGAACAGGTCAGAAGTTT 58.994 41.667 0.00 0.00 40.43 2.66
3985 6386 5.474876 GGATGATGAACAGGTCAGAAGTTTT 59.525 40.000 0.00 0.00 40.43 2.43
3986 6387 6.348868 GGATGATGAACAGGTCAGAAGTTTTC 60.349 42.308 0.00 0.00 40.43 2.29
3987 6388 5.684704 TGATGAACAGGTCAGAAGTTTTCT 58.315 37.500 0.00 0.00 40.43 2.52
3988 6389 5.760253 TGATGAACAGGTCAGAAGTTTTCTC 59.240 40.000 0.00 0.00 40.43 2.87
3989 6390 4.119862 TGAACAGGTCAGAAGTTTTCTCG 58.880 43.478 0.00 0.00 38.11 4.04
3990 6391 2.484889 ACAGGTCAGAAGTTTTCTCGC 58.515 47.619 0.00 0.00 38.11 5.03
3991 6392 2.158957 ACAGGTCAGAAGTTTTCTCGCA 60.159 45.455 0.00 0.00 38.11 5.10
3992 6393 2.872245 CAGGTCAGAAGTTTTCTCGCAA 59.128 45.455 0.00 0.00 38.11 4.85
3993 6394 3.312421 CAGGTCAGAAGTTTTCTCGCAAA 59.688 43.478 0.00 0.00 38.11 3.68
3994 6395 3.945285 AGGTCAGAAGTTTTCTCGCAAAA 59.055 39.130 0.00 0.00 38.11 2.44
3995 6396 4.398044 AGGTCAGAAGTTTTCTCGCAAAAA 59.602 37.500 0.00 0.00 38.11 1.94
4022 6423 9.457436 AAAAATCAACCCAAATCGTACTATACT 57.543 29.630 0.00 0.00 0.00 2.12
4024 6425 9.760077 AAATCAACCCAAATCGTACTATACTAG 57.240 33.333 0.00 0.00 0.00 2.57
4026 6427 8.297470 TCAACCCAAATCGTACTATACTAGTT 57.703 34.615 0.00 0.00 40.14 2.24
4027 6428 8.408601 TCAACCCAAATCGTACTATACTAGTTC 58.591 37.037 0.00 0.00 40.14 3.01
4028 6429 8.411683 CAACCCAAATCGTACTATACTAGTTCT 58.588 37.037 0.00 0.00 40.14 3.01
4029 6430 7.938715 ACCCAAATCGTACTATACTAGTTCTG 58.061 38.462 0.00 0.00 40.14 3.02
4030 6431 7.559170 ACCCAAATCGTACTATACTAGTTCTGT 59.441 37.037 0.00 0.04 40.14 3.41
4031 6432 7.861372 CCCAAATCGTACTATACTAGTTCTGTG 59.139 40.741 0.00 0.00 40.14 3.66
4033 6434 9.222916 CAAATCGTACTATACTAGTTCTGTGTG 57.777 37.037 0.00 0.00 40.14 3.82
4034 6435 8.503458 AATCGTACTATACTAGTTCTGTGTGT 57.497 34.615 0.00 0.00 40.14 3.72
4036 6437 8.327941 TCGTACTATACTAGTTCTGTGTGTTT 57.672 34.615 0.00 0.00 40.14 2.83
4037 6438 8.232513 TCGTACTATACTAGTTCTGTGTGTTTG 58.767 37.037 0.00 0.00 40.14 2.93
4044 6491 9.950680 ATACTAGTTCTGTGTGTTTGAAAAATG 57.049 29.630 0.00 0.00 0.00 2.32
4045 6492 7.826690 ACTAGTTCTGTGTGTTTGAAAAATGT 58.173 30.769 0.00 0.00 0.00 2.71
4049 6496 9.086336 AGTTCTGTGTGTTTGAAAAATGTATTG 57.914 29.630 0.00 0.00 0.00 1.90
4113 6561 4.835284 TTCAAAAGGGGCCAAAATATCC 57.165 40.909 4.39 0.00 0.00 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 8.861033 TCTCAACACTCTCATTTCAATTTTTG 57.139 30.769 0.00 0.00 0.00 2.44
32 33 8.660373 GTCGATAATTTCTCAACACTCTCATTT 58.340 33.333 0.00 0.00 0.00 2.32
55 56 1.078759 AGCCGATTTTGAGCGAGTCG 61.079 55.000 8.54 8.54 0.00 4.18
62 63 1.740025 GAAGGGTCAGCCGATTTTGAG 59.260 52.381 0.00 0.00 34.97 3.02
73 74 5.560724 TGAGGTCTTTAATTGAAGGGTCAG 58.439 41.667 9.84 0.00 34.49 3.51
80 81 8.463930 ACATTCAACTGAGGTCTTTAATTGAA 57.536 30.769 0.00 0.00 38.52 2.69
81 82 8.352201 CAACATTCAACTGAGGTCTTTAATTGA 58.648 33.333 0.00 0.00 0.00 2.57
97 101 9.233232 CCTAGTTTTAAACAGTCAACATTCAAC 57.767 33.333 10.60 0.00 0.00 3.18
108 112 8.657712 ACACTATTCTCCCTAGTTTTAAACAGT 58.342 33.333 10.60 0.00 0.00 3.55
155 159 7.588143 ATTTCTAACACTCTCTCGTTCAATG 57.412 36.000 0.00 0.00 0.00 2.82
168 173 6.929049 TGATCGAGTCAACAATTTCTAACACT 59.071 34.615 0.00 0.00 32.78 3.55
171 176 9.612620 ATTTTGATCGAGTCAACAATTTCTAAC 57.387 29.630 9.02 0.00 46.14 2.34
173 178 9.611284 CAATTTTGATCGAGTCAACAATTTCTA 57.389 29.630 9.02 0.00 46.14 2.10
200 205 8.655935 AGGTCTTCAATTAAAATTGGATCACT 57.344 30.769 13.89 6.40 44.51 3.41
219 224 6.966534 AAGTCAACATTCAATTGAGGTCTT 57.033 33.333 8.41 8.16 36.76 3.01
239 244 7.459234 ACACTATGCTCCCTAGTTTTAAAAGT 58.541 34.615 12.72 12.72 0.00 2.66
303 2499 8.779303 TGTGATCGAATGTAAAAAGCTAAGAAA 58.221 29.630 0.00 0.00 0.00 2.52
306 2502 7.743104 AGTGTGATCGAATGTAAAAAGCTAAG 58.257 34.615 0.00 0.00 0.00 2.18
308 2504 7.667043 AAGTGTGATCGAATGTAAAAAGCTA 57.333 32.000 0.00 0.00 0.00 3.32
321 2517 4.449068 GCTTGAGAGAAAAAGTGTGATCGA 59.551 41.667 0.00 0.00 0.00 3.59
339 2536 2.104622 TCCACAAGAGACATGTGCTTGA 59.895 45.455 30.17 15.00 45.32 3.02
347 2544 3.370315 GCAGAATCCTCCACAAGAGACAT 60.370 47.826 0.00 0.00 46.50 3.06
350 2547 2.544721 AGCAGAATCCTCCACAAGAGA 58.455 47.619 0.00 0.00 46.50 3.10
391 2588 7.492524 GTGTCATGTAGGATAAGATGTCAGAA 58.507 38.462 0.00 0.00 0.00 3.02
401 2598 2.432874 CCCCACGTGTCATGTAGGATAA 59.567 50.000 15.65 0.00 0.00 1.75
402 2599 2.036387 CCCCACGTGTCATGTAGGATA 58.964 52.381 15.65 0.00 0.00 2.59
469 2666 9.442047 GGCAAGTGAGCATAGTATAGATTAAAT 57.558 33.333 0.00 0.00 35.83 1.40
518 2715 9.896263 TCACACTTTTAAAACGACTTTACTTTT 57.104 25.926 0.00 0.00 0.00 2.27
519 2716 9.550811 CTCACACTTTTAAAACGACTTTACTTT 57.449 29.630 0.00 0.00 0.00 2.66
520 2717 8.724229 ACTCACACTTTTAAAACGACTTTACTT 58.276 29.630 0.00 0.00 0.00 2.24
521 2718 8.260270 ACTCACACTTTTAAAACGACTTTACT 57.740 30.769 0.00 0.00 0.00 2.24
522 2719 9.628983 CTACTCACACTTTTAAAACGACTTTAC 57.371 33.333 0.00 0.00 0.00 2.01
523 2720 9.369904 ACTACTCACACTTTTAAAACGACTTTA 57.630 29.630 0.00 0.00 0.00 1.85
524 2721 8.173130 CACTACTCACACTTTTAAAACGACTTT 58.827 33.333 0.00 0.00 0.00 2.66
525 2722 7.332678 ACACTACTCACACTTTTAAAACGACTT 59.667 33.333 0.00 0.00 0.00 3.01
526 2723 6.815142 ACACTACTCACACTTTTAAAACGACT 59.185 34.615 0.00 0.00 0.00 4.18
527 2724 6.997222 ACACTACTCACACTTTTAAAACGAC 58.003 36.000 0.00 0.00 0.00 4.34
528 2725 6.812656 TGACACTACTCACACTTTTAAAACGA 59.187 34.615 0.00 0.00 0.00 3.85
529 2726 6.996106 TGACACTACTCACACTTTTAAAACG 58.004 36.000 0.00 0.00 0.00 3.60
530 2727 9.615295 TTTTGACACTACTCACACTTTTAAAAC 57.385 29.630 0.00 0.00 0.00 2.43
532 2729 9.834628 CTTTTTGACACTACTCACACTTTTAAA 57.165 29.630 0.00 0.00 0.00 1.52
533 2730 9.005777 ACTTTTTGACACTACTCACACTTTTAA 57.994 29.630 0.00 0.00 0.00 1.52
534 2731 8.556213 ACTTTTTGACACTACTCACACTTTTA 57.444 30.769 0.00 0.00 0.00 1.52
539 2736 6.312918 TCTGAACTTTTTGACACTACTCACAC 59.687 38.462 0.00 0.00 0.00 3.82
621 2842 4.466828 CTCGTATTTCAAAAGCCACTGTG 58.533 43.478 0.00 0.00 0.00 3.66
711 2950 4.778534 TCACAAAACTCTAGGTAGGTCG 57.221 45.455 0.00 0.00 0.00 4.79
931 3182 4.251246 CTCTCGTGGGAGGAGGAG 57.749 66.667 0.00 0.00 40.85 3.69
989 3241 4.880537 CGAGCATCTTCGCGGCCT 62.881 66.667 6.13 0.00 36.85 5.19
1240 3492 6.055588 CCACTTCTTCTTCACTAGGAAACAA 58.944 40.000 0.00 0.00 34.44 2.83
1252 3504 0.884704 TGCGCACCCACTTCTTCTTC 60.885 55.000 5.66 0.00 0.00 2.87
1253 3505 0.250901 ATGCGCACCCACTTCTTCTT 60.251 50.000 14.90 0.00 0.00 2.52
1254 3506 0.250901 AATGCGCACCCACTTCTTCT 60.251 50.000 14.90 0.00 0.00 2.85
1327 3580 1.472878 AGTCATTCGCTCTTCGTAGCA 59.527 47.619 7.68 0.00 42.91 3.49
1450 3732 8.182227 GCAATCAATCCTTAACAAGTTAGTACC 58.818 37.037 0.00 0.00 0.00 3.34
1456 3743 8.860088 AGTTAAGCAATCAATCCTTAACAAGTT 58.140 29.630 18.84 0.00 46.63 2.66
1471 3758 8.072567 CACCATCTTATAAGCAGTTAAGCAATC 58.927 37.037 7.67 0.00 36.85 2.67
1472 3759 7.775093 TCACCATCTTATAAGCAGTTAAGCAAT 59.225 33.333 7.67 0.00 36.85 3.56
1473 3760 7.109501 TCACCATCTTATAAGCAGTTAAGCAA 58.890 34.615 7.67 0.00 36.85 3.91
1474 3761 6.649155 TCACCATCTTATAAGCAGTTAAGCA 58.351 36.000 7.67 0.00 36.85 3.91
1475 3762 7.736447 ATCACCATCTTATAAGCAGTTAAGC 57.264 36.000 7.67 0.00 0.00 3.09
1648 3949 1.626654 AACAGTACGCGAGCATGCAC 61.627 55.000 21.98 13.43 34.15 4.57
1649 3950 0.109039 TAACAGTACGCGAGCATGCA 60.109 50.000 21.98 0.00 34.15 3.96
1650 3951 1.071239 CATAACAGTACGCGAGCATGC 60.071 52.381 15.93 10.51 0.00 4.06
1660 3961 6.154445 TCCAAGTTCTTCGTCATAACAGTAC 58.846 40.000 0.00 0.00 0.00 2.73
1877 4185 4.752101 GTGACTTTATCCATCCCATCGAAG 59.248 45.833 0.00 0.00 0.00 3.79
1879 4187 3.071023 GGTGACTTTATCCATCCCATCGA 59.929 47.826 0.00 0.00 0.00 3.59
1880 4188 3.403038 GGTGACTTTATCCATCCCATCG 58.597 50.000 0.00 0.00 0.00 3.84
1881 4189 3.395941 AGGGTGACTTTATCCATCCCATC 59.604 47.826 0.00 0.00 34.11 3.51
1882 4190 3.139025 CAGGGTGACTTTATCCATCCCAT 59.861 47.826 0.00 0.00 34.11 4.00
1894 4202 0.252284 ATCGGTCTCCAGGGTGACTT 60.252 55.000 17.25 3.84 38.32 3.01
1933 4241 2.302733 TCCAGAGCATTGCTAGTCACAA 59.697 45.455 11.96 0.00 39.88 3.33
1966 4274 1.845809 CTCCTTCACCAGCGCACAAC 61.846 60.000 11.47 0.00 0.00 3.32
2005 4314 9.715121 ATCACAGTTATCAAATGAAAGCAAAAT 57.285 25.926 0.00 0.00 0.00 1.82
2014 4323 9.628746 CAAATCAACATCACAGTTATCAAATGA 57.371 29.630 0.00 0.00 0.00 2.57
2019 4328 9.844790 GAAATCAAATCAACATCACAGTTATCA 57.155 29.630 0.00 0.00 0.00 2.15
2110 4419 2.236146 GGATGTCCACAGTACATGGTCA 59.764 50.000 15.07 15.07 37.69 4.02
2113 4422 2.237143 ACTGGATGTCCACAGTACATGG 59.763 50.000 9.41 9.41 45.45 3.66
2120 4429 2.816087 CAGGAAAACTGGATGTCCACAG 59.184 50.000 0.00 0.00 43.70 3.66
2237 4546 7.429374 AGACTCATAGATCCAGTGATTGAAA 57.571 36.000 0.00 0.00 0.00 2.69
2279 4588 1.897560 AGCAACAGGGCAAGAGTTAC 58.102 50.000 0.00 0.00 35.83 2.50
2311 4620 1.952296 CTACAAGATCATGGCTTGCCC 59.048 52.381 21.48 0.00 45.00 5.36
2325 4634 5.560966 ACAATACGGCCATTTTCTACAAG 57.439 39.130 2.24 0.00 0.00 3.16
2462 4773 5.751243 ATTTACAAAGACATACATCCGGC 57.249 39.130 0.00 0.00 0.00 6.13
2508 4820 0.887836 CCTGCACTTCTCAGCTGCAA 60.888 55.000 9.47 3.16 36.93 4.08
2617 4929 1.229984 CTTCACCCCCTCCTTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
2690 5002 1.229428 TCAGCCAACGCTTTCTCAAG 58.771 50.000 0.00 0.00 45.55 3.02
2692 5004 1.159285 CATCAGCCAACGCTTTCTCA 58.841 50.000 0.00 0.00 45.55 3.27
2714 5026 2.050144 AGGACTCAAGCCTTCTGTCAA 58.950 47.619 8.13 0.00 29.44 3.18
2718 5030 0.324285 AGCAGGACTCAAGCCTTCTG 59.676 55.000 0.00 0.00 32.12 3.02
2726 5038 3.890313 TGCCTCAGCAGGACTCAA 58.110 55.556 0.00 0.00 46.52 3.02
2762 5074 3.124921 CGTCGCTTTTGCCCCGAT 61.125 61.111 0.00 0.00 43.93 4.18
2829 5141 0.390472 CTCGAAGAAGTCCCAGCCAC 60.390 60.000 0.00 0.00 34.09 5.01
2895 5207 0.034863 GGTTCCGAATAAGGTGCCCA 60.035 55.000 0.00 0.00 0.00 5.36
3019 5331 2.849294 TCAACCCGTTGATGACATCA 57.151 45.000 14.24 14.24 43.90 3.07
3073 5385 2.034558 TGCTGCGTAAGATGATGATCGA 59.965 45.455 0.00 0.00 43.02 3.59
3088 5400 2.511145 GAGCCCTCTTCTGCTGCG 60.511 66.667 0.00 0.00 38.11 5.18
3089 5401 1.449956 CTGAGCCCTCTTCTGCTGC 60.450 63.158 0.00 0.00 38.11 5.25
3090 5402 0.176219 CTCTGAGCCCTCTTCTGCTG 59.824 60.000 0.00 0.00 38.11 4.41
3091 5403 0.252193 ACTCTGAGCCCTCTTCTGCT 60.252 55.000 4.19 0.00 41.42 4.24
3093 5405 2.224018 GCATACTCTGAGCCCTCTTCTG 60.224 54.545 4.19 0.00 0.00 3.02
3094 5406 2.038659 GCATACTCTGAGCCCTCTTCT 58.961 52.381 4.19 0.00 0.00 2.85
3095 5407 1.759445 TGCATACTCTGAGCCCTCTTC 59.241 52.381 4.19 0.00 0.00 2.87
3096 5408 1.761784 CTGCATACTCTGAGCCCTCTT 59.238 52.381 4.19 0.00 0.00 2.85
3097 5409 1.063341 TCTGCATACTCTGAGCCCTCT 60.063 52.381 4.19 0.00 0.00 3.69
3098 5410 1.407936 TCTGCATACTCTGAGCCCTC 58.592 55.000 4.19 0.00 0.00 4.30
3099 5411 2.100128 ATCTGCATACTCTGAGCCCT 57.900 50.000 4.19 0.00 0.00 5.19
3100 5412 3.323403 AGTTATCTGCATACTCTGAGCCC 59.677 47.826 4.19 0.00 0.00 5.19
3101 5413 4.599047 AGTTATCTGCATACTCTGAGCC 57.401 45.455 4.19 0.00 0.00 4.70
3102 5414 6.016693 TCTGTAGTTATCTGCATACTCTGAGC 60.017 42.308 4.19 0.00 35.88 4.26
3103 5415 7.503521 TCTGTAGTTATCTGCATACTCTGAG 57.496 40.000 2.45 2.45 35.88 3.35
3104 5416 7.558081 ACTTCTGTAGTTATCTGCATACTCTGA 59.442 37.037 0.00 0.00 35.88 3.27
3105 5417 7.711846 ACTTCTGTAGTTATCTGCATACTCTG 58.288 38.462 0.00 0.00 35.88 3.35
3106 5418 7.889873 ACTTCTGTAGTTATCTGCATACTCT 57.110 36.000 0.00 0.00 35.88 3.24
3107 5419 7.377397 CGAACTTCTGTAGTTATCTGCATACTC 59.623 40.741 0.00 0.00 47.00 2.59
3108 5420 7.148052 ACGAACTTCTGTAGTTATCTGCATACT 60.148 37.037 0.00 0.00 47.00 2.12
3109 5421 6.973474 ACGAACTTCTGTAGTTATCTGCATAC 59.027 38.462 0.00 0.00 47.00 2.39
3110 5422 7.067129 AGACGAACTTCTGTAGTTATCTGCATA 59.933 37.037 10.62 0.00 47.00 3.14
3111 5423 5.967088 ACGAACTTCTGTAGTTATCTGCAT 58.033 37.500 0.00 0.00 47.00 3.96
3112 5424 5.183331 AGACGAACTTCTGTAGTTATCTGCA 59.817 40.000 10.62 0.00 47.00 4.41
3113 5425 5.642686 AGACGAACTTCTGTAGTTATCTGC 58.357 41.667 10.62 0.00 47.00 4.26
3114 5426 7.425882 CGTAAGACGAACTTCTGTAGTTATCTG 59.574 40.741 11.61 2.33 46.05 2.90
3115 5427 7.118971 ACGTAAGACGAACTTCTGTAGTTATCT 59.881 37.037 5.94 4.16 46.05 1.98
3116 5428 7.239972 ACGTAAGACGAACTTCTGTAGTTATC 58.760 38.462 5.94 2.10 46.05 1.75
3117 5429 7.138692 ACGTAAGACGAACTTCTGTAGTTAT 57.861 36.000 5.94 0.00 46.05 1.89
3118 5430 6.545504 ACGTAAGACGAACTTCTGTAGTTA 57.454 37.500 5.94 0.00 46.05 2.24
3119 5431 5.429957 ACGTAAGACGAACTTCTGTAGTT 57.570 39.130 5.94 0.00 46.05 2.24
3120 5432 6.369890 TGATACGTAAGACGAACTTCTGTAGT 59.630 38.462 5.94 0.00 46.05 2.73
3121 5433 6.769076 TGATACGTAAGACGAACTTCTGTAG 58.231 40.000 5.94 0.00 46.05 2.74
3122 5434 6.591448 TCTGATACGTAAGACGAACTTCTGTA 59.409 38.462 5.94 2.18 46.05 2.74
3123 5435 5.410746 TCTGATACGTAAGACGAACTTCTGT 59.589 40.000 5.94 0.00 46.05 3.41
3124 5436 5.866075 TCTGATACGTAAGACGAACTTCTG 58.134 41.667 5.94 0.00 46.05 3.02
3125 5437 6.370994 TCTTCTGATACGTAAGACGAACTTCT 59.629 38.462 5.94 0.00 46.05 2.85
3126 5438 6.541086 TCTTCTGATACGTAAGACGAACTTC 58.459 40.000 5.94 0.00 46.05 3.01
3127 5439 6.403418 CCTCTTCTGATACGTAAGACGAACTT 60.403 42.308 5.94 0.00 46.05 2.66
3128 5440 5.064962 CCTCTTCTGATACGTAAGACGAACT 59.935 44.000 5.94 0.00 46.05 3.01
3129 5441 5.264712 CCTCTTCTGATACGTAAGACGAAC 58.735 45.833 5.94 0.00 46.05 3.95
3130 5442 4.334759 CCCTCTTCTGATACGTAAGACGAA 59.665 45.833 5.94 0.00 46.05 3.85
3131 5443 3.875727 CCCTCTTCTGATACGTAAGACGA 59.124 47.826 5.94 1.37 46.05 4.20
3133 5445 3.633065 AGCCCTCTTCTGATACGTAAGAC 59.367 47.826 0.00 0.00 43.62 3.01
3134 5446 3.884091 GAGCCCTCTTCTGATACGTAAGA 59.116 47.826 0.00 0.00 43.62 2.10
3136 5448 3.628008 TGAGCCCTCTTCTGATACGTAA 58.372 45.455 0.00 0.00 0.00 3.18
3137 5449 3.118000 TCTGAGCCCTCTTCTGATACGTA 60.118 47.826 0.00 0.00 0.00 3.57
3138 5450 2.028130 CTGAGCCCTCTTCTGATACGT 58.972 52.381 0.00 0.00 0.00 3.57
3139 5451 2.293122 CTCTGAGCCCTCTTCTGATACG 59.707 54.545 0.00 0.00 0.00 3.06
3140 5452 3.295973 ACTCTGAGCCCTCTTCTGATAC 58.704 50.000 4.19 0.00 0.00 2.24
3141 5453 3.678965 ACTCTGAGCCCTCTTCTGATA 57.321 47.619 4.19 0.00 0.00 2.15
3142 5454 2.548464 ACTCTGAGCCCTCTTCTGAT 57.452 50.000 4.19 0.00 0.00 2.90
3182 5494 0.861837 GTTGGCTCATATCCTTCGCG 59.138 55.000 0.00 0.00 0.00 5.87
3231 5546 3.234730 CCCCCGAATCCTCCTCCG 61.235 72.222 0.00 0.00 0.00 4.63
3270 5585 0.590195 CGGCTGATATCCAAGCTTGC 59.410 55.000 21.43 6.76 0.00 4.01
3271 5586 1.869767 GTCGGCTGATATCCAAGCTTG 59.130 52.381 19.93 19.93 0.00 4.01
3298 5613 3.466791 CTGGCCTGCTACCATCCCG 62.467 68.421 3.32 0.00 36.36 5.14
3306 5621 2.045634 CTGCTTGCTGGCCTGCTA 60.046 61.111 31.50 24.40 0.00 3.49
3323 5638 5.220209 GCAAAAACAAGTTCAGTACAAGTGC 60.220 40.000 0.00 0.00 0.00 4.40
3329 5648 6.265577 AGACATGCAAAAACAAGTTCAGTAC 58.734 36.000 0.00 0.00 0.00 2.73
3379 5699 4.989279 ACACAATGGCCATACAAGAATC 57.011 40.909 21.15 0.00 0.00 2.52
3424 5744 4.790962 ATGCAGCCAGAGCCGTGG 62.791 66.667 0.00 0.00 41.25 4.94
3427 5747 4.790962 ACCATGCAGCCAGAGCCG 62.791 66.667 0.00 0.00 41.25 5.52
3430 5750 2.093288 TCTTTAGACCATGCAGCCAGAG 60.093 50.000 0.00 0.00 0.00 3.35
3432 5752 2.286872 CTCTTTAGACCATGCAGCCAG 58.713 52.381 0.00 0.00 0.00 4.85
3448 5768 7.148086 TGTGTTCTTTGTTCATGTTTAGCTCTT 60.148 33.333 0.00 0.00 0.00 2.85
3451 5771 6.449635 TGTGTTCTTTGTTCATGTTTAGCT 57.550 33.333 0.00 0.00 0.00 3.32
3452 5772 7.113965 CAGATGTGTTCTTTGTTCATGTTTAGC 59.886 37.037 0.00 0.00 29.93 3.09
3455 5781 6.096705 TCCAGATGTGTTCTTTGTTCATGTTT 59.903 34.615 0.00 0.00 29.93 2.83
3461 5787 6.876257 AGATACTCCAGATGTGTTCTTTGTTC 59.124 38.462 0.00 0.00 29.93 3.18
3480 5815 5.216622 TCCCCAAGTATGCTACAAGATACT 58.783 41.667 0.00 0.00 37.04 2.12
3481 5816 5.546621 TCCCCAAGTATGCTACAAGATAC 57.453 43.478 0.00 0.00 0.00 2.24
3482 5817 5.427157 TGTTCCCCAAGTATGCTACAAGATA 59.573 40.000 0.00 0.00 0.00 1.98
3483 5818 4.227300 TGTTCCCCAAGTATGCTACAAGAT 59.773 41.667 0.00 0.00 0.00 2.40
3505 5845 4.629200 GCAAATTCACTCTAGAGACCTGTG 59.371 45.833 26.57 14.07 0.00 3.66
3535 5875 6.627690 ATTATAAACGAACTGACAGACACG 57.372 37.500 10.08 13.15 0.00 4.49
3664 6004 0.040958 CGAGGTGTGAAGCAAACTGC 60.041 55.000 0.00 0.00 45.46 4.40
3701 6041 7.176865 CGACTATAGACTCCCCTTTGATATTGA 59.823 40.741 6.78 0.00 0.00 2.57
3702 6042 7.039644 ACGACTATAGACTCCCCTTTGATATTG 60.040 40.741 6.78 0.00 0.00 1.90
3703 6043 7.011382 ACGACTATAGACTCCCCTTTGATATT 58.989 38.462 6.78 0.00 0.00 1.28
3704 6044 6.553857 ACGACTATAGACTCCCCTTTGATAT 58.446 40.000 6.78 0.00 0.00 1.63
3706 6046 4.805744 ACGACTATAGACTCCCCTTTGAT 58.194 43.478 6.78 0.00 0.00 2.57
3707 6047 4.205587 GACGACTATAGACTCCCCTTTGA 58.794 47.826 6.78 0.00 0.00 2.69
3710 6050 2.172293 ACGACGACTATAGACTCCCCTT 59.828 50.000 6.78 0.00 0.00 3.95
3711 6051 1.767681 ACGACGACTATAGACTCCCCT 59.232 52.381 6.78 0.00 0.00 4.79
3712 6052 1.872313 CACGACGACTATAGACTCCCC 59.128 57.143 6.78 0.00 0.00 4.81
3713 6053 2.831333 TCACGACGACTATAGACTCCC 58.169 52.381 6.78 0.00 0.00 4.30
3714 6054 4.056740 TGATCACGACGACTATAGACTCC 58.943 47.826 6.78 0.00 0.00 3.85
3715 6055 4.150980 CCTGATCACGACGACTATAGACTC 59.849 50.000 6.78 0.00 0.00 3.36
3716 6056 4.059511 CCTGATCACGACGACTATAGACT 58.940 47.826 6.78 0.00 0.00 3.24
3717 6057 4.056740 TCCTGATCACGACGACTATAGAC 58.943 47.826 6.78 0.00 0.00 2.59
3718 6058 4.332428 TCCTGATCACGACGACTATAGA 57.668 45.455 6.78 0.00 0.00 1.98
3719 6059 5.419760 TTTCCTGATCACGACGACTATAG 57.580 43.478 0.00 0.00 0.00 1.31
3721 6061 4.398358 TCTTTTCCTGATCACGACGACTAT 59.602 41.667 0.00 0.00 0.00 2.12
3722 6062 3.754850 TCTTTTCCTGATCACGACGACTA 59.245 43.478 0.00 0.00 0.00 2.59
3723 6063 2.557056 TCTTTTCCTGATCACGACGACT 59.443 45.455 0.00 0.00 0.00 4.18
3724 6064 2.942710 TCTTTTCCTGATCACGACGAC 58.057 47.619 0.00 0.00 0.00 4.34
3726 6066 5.577164 AGTTTATCTTTTCCTGATCACGACG 59.423 40.000 0.00 0.00 0.00 5.12
3728 6068 5.874810 CCAGTTTATCTTTTCCTGATCACGA 59.125 40.000 0.00 0.00 0.00 4.35
3729 6069 5.874810 TCCAGTTTATCTTTTCCTGATCACG 59.125 40.000 0.00 0.00 0.00 4.35
3730 6070 7.687941 TTCCAGTTTATCTTTTCCTGATCAC 57.312 36.000 0.00 0.00 0.00 3.06
3732 6072 7.013750 GGGATTCCAGTTTATCTTTTCCTGATC 59.986 40.741 4.80 0.00 0.00 2.92
3733 6073 6.836007 GGGATTCCAGTTTATCTTTTCCTGAT 59.164 38.462 4.80 0.00 0.00 2.90
3734 6074 6.187682 GGGATTCCAGTTTATCTTTTCCTGA 58.812 40.000 4.80 0.00 0.00 3.86
3735 6075 5.066505 CGGGATTCCAGTTTATCTTTTCCTG 59.933 44.000 4.80 0.00 0.00 3.86
3738 6078 5.190677 TCCGGGATTCCAGTTTATCTTTTC 58.809 41.667 0.00 0.00 0.00 2.29
3740 6080 4.855298 TCCGGGATTCCAGTTTATCTTT 57.145 40.909 0.00 0.00 0.00 2.52
3744 6084 2.578940 TGGTTCCGGGATTCCAGTTTAT 59.421 45.455 14.72 0.00 0.00 1.40
3745 6085 1.986631 TGGTTCCGGGATTCCAGTTTA 59.013 47.619 14.72 0.00 0.00 2.01
3750 6101 0.995803 TGATTGGTTCCGGGATTCCA 59.004 50.000 14.72 14.72 0.00 3.53
3762 6141 3.569701 GTGACACTGGACAAATGATTGGT 59.430 43.478 0.00 0.00 41.01 3.67
3778 6163 0.814010 AGCTGACCAAACGGTGACAC 60.814 55.000 0.00 0.00 36.70 3.67
3783 6168 1.237285 GCATGAGCTGACCAAACGGT 61.237 55.000 0.00 0.00 37.34 4.83
3836 6221 4.839796 TCGACATTTCACGAAACTTTTCC 58.160 39.130 0.00 0.00 35.62 3.13
3837 6222 6.246540 GCTATCGACATTTCACGAAACTTTTC 59.753 38.462 0.00 0.00 41.65 2.29
3851 6236 4.613925 ATGGAGTCATGCTATCGACATT 57.386 40.909 0.00 0.00 34.48 2.71
3878 6263 3.190874 CTGGAATCTGCTCCGACTTTAC 58.809 50.000 0.00 0.00 38.44 2.01
3904 6305 1.371467 ACATCCAGGTCCAACCATCA 58.629 50.000 0.00 0.00 41.95 3.07
3907 6308 2.038863 AGTACATCCAGGTCCAACCA 57.961 50.000 0.00 0.00 41.95 3.67
3908 6309 3.081804 CAAAGTACATCCAGGTCCAACC 58.918 50.000 0.00 0.00 38.99 3.77
3910 6311 4.141287 CAACAAAGTACATCCAGGTCCAA 58.859 43.478 0.00 0.00 0.00 3.53
3911 6312 3.137544 ACAACAAAGTACATCCAGGTCCA 59.862 43.478 0.00 0.00 0.00 4.02
3913 6314 5.531287 AGAAACAACAAAGTACATCCAGGTC 59.469 40.000 0.00 0.00 0.00 3.85
3914 6315 5.445964 AGAAACAACAAAGTACATCCAGGT 58.554 37.500 0.00 0.00 0.00 4.00
3915 6316 6.710744 ACTAGAAACAACAAAGTACATCCAGG 59.289 38.462 0.00 0.00 0.00 4.45
3916 6317 7.226720 ACACTAGAAACAACAAAGTACATCCAG 59.773 37.037 0.00 0.00 0.00 3.86
3917 6318 7.051623 ACACTAGAAACAACAAAGTACATCCA 58.948 34.615 0.00 0.00 0.00 3.41
3918 6319 7.492352 ACACTAGAAACAACAAAGTACATCC 57.508 36.000 0.00 0.00 0.00 3.51
3943 6344 0.938713 CCGTCGTGGCAGTACAAAAA 59.061 50.000 0.00 0.00 0.00 1.94
3944 6345 0.104487 TCCGTCGTGGCAGTACAAAA 59.896 50.000 0.00 0.00 37.80 2.44
3945 6346 0.319083 ATCCGTCGTGGCAGTACAAA 59.681 50.000 0.00 0.00 37.80 2.83
3946 6347 0.389296 CATCCGTCGTGGCAGTACAA 60.389 55.000 0.00 0.00 37.80 2.41
3947 6348 1.214325 CATCCGTCGTGGCAGTACA 59.786 57.895 0.00 0.00 37.80 2.90
3948 6349 0.102481 ATCATCCGTCGTGGCAGTAC 59.898 55.000 0.00 0.00 37.80 2.73
3949 6350 0.102300 CATCATCCGTCGTGGCAGTA 59.898 55.000 0.00 0.00 37.80 2.74
3950 6351 1.153568 CATCATCCGTCGTGGCAGT 60.154 57.895 0.00 0.00 37.80 4.40
3951 6352 0.460109 TTCATCATCCGTCGTGGCAG 60.460 55.000 0.00 0.00 37.80 4.85
3952 6353 0.739462 GTTCATCATCCGTCGTGGCA 60.739 55.000 0.00 0.00 37.80 4.92
3953 6354 0.739462 TGTTCATCATCCGTCGTGGC 60.739 55.000 0.00 0.00 37.80 5.01
3954 6355 1.280982 CTGTTCATCATCCGTCGTGG 58.719 55.000 0.00 0.00 40.09 4.94
3955 6356 1.280982 CCTGTTCATCATCCGTCGTG 58.719 55.000 0.00 0.00 0.00 4.35
3956 6357 0.895530 ACCTGTTCATCATCCGTCGT 59.104 50.000 0.00 0.00 0.00 4.34
3957 6358 1.135112 TGACCTGTTCATCATCCGTCG 60.135 52.381 0.00 0.00 0.00 5.12
3958 6359 2.166459 TCTGACCTGTTCATCATCCGTC 59.834 50.000 0.00 0.00 32.17 4.79
3959 6360 2.179427 TCTGACCTGTTCATCATCCGT 58.821 47.619 0.00 0.00 32.17 4.69
3960 6361 2.967599 TCTGACCTGTTCATCATCCG 57.032 50.000 0.00 0.00 32.17 4.18
3961 6362 4.213564 ACTTCTGACCTGTTCATCATCC 57.786 45.455 0.00 0.00 32.17 3.51
3962 6363 6.429385 AGAAAACTTCTGACCTGTTCATCATC 59.571 38.462 0.00 0.00 38.91 2.92
3963 6364 6.302269 AGAAAACTTCTGACCTGTTCATCAT 58.698 36.000 0.00 0.00 38.91 2.45
3964 6365 5.684704 AGAAAACTTCTGACCTGTTCATCA 58.315 37.500 0.00 0.00 38.91 3.07
3965 6366 5.107298 CGAGAAAACTTCTGACCTGTTCATC 60.107 44.000 0.00 0.00 40.87 2.92
3966 6367 4.752101 CGAGAAAACTTCTGACCTGTTCAT 59.248 41.667 0.00 0.00 40.87 2.57
3967 6368 4.119862 CGAGAAAACTTCTGACCTGTTCA 58.880 43.478 0.00 0.00 40.87 3.18
3968 6369 3.059529 GCGAGAAAACTTCTGACCTGTTC 60.060 47.826 0.00 0.00 40.87 3.18
3969 6370 2.872858 GCGAGAAAACTTCTGACCTGTT 59.127 45.455 0.00 0.00 40.87 3.16
3970 6371 2.158957 TGCGAGAAAACTTCTGACCTGT 60.159 45.455 0.00 0.00 40.87 4.00
3971 6372 2.483876 TGCGAGAAAACTTCTGACCTG 58.516 47.619 0.00 0.00 40.87 4.00
3972 6373 2.910688 TGCGAGAAAACTTCTGACCT 57.089 45.000 0.00 0.00 40.87 3.85
3973 6374 3.963383 TTTGCGAGAAAACTTCTGACC 57.037 42.857 0.00 0.00 40.87 4.02
3996 6397 9.457436 AGTATAGTACGATTTGGGTTGATTTTT 57.543 29.630 0.00 0.00 0.00 1.94
4019 6420 8.952278 ACATTTTTCAAACACACAGAACTAGTA 58.048 29.630 0.00 0.00 0.00 1.82
4020 6421 7.826690 ACATTTTTCAAACACACAGAACTAGT 58.173 30.769 0.00 0.00 0.00 2.57
4021 6422 9.950680 ATACATTTTTCAAACACACAGAACTAG 57.049 29.630 0.00 0.00 0.00 2.57
4024 6425 9.081997 TCAATACATTTTTCAAACACACAGAAC 57.918 29.630 0.00 0.00 0.00 3.01
4026 6427 9.081997 GTTCAATACATTTTTCAAACACACAGA 57.918 29.630 0.00 0.00 0.00 3.41
4027 6428 8.867935 TGTTCAATACATTTTTCAAACACACAG 58.132 29.630 0.00 0.00 0.00 3.66
4028 6429 8.763049 TGTTCAATACATTTTTCAAACACACA 57.237 26.923 0.00 0.00 0.00 3.72
4062 6509 9.349713 TGCTTCAACCTAAAAAGATCTCTTAAA 57.650 29.630 0.00 0.00 34.61 1.52
4065 6512 8.414629 AATGCTTCAACCTAAAAAGATCTCTT 57.585 30.769 0.00 0.00 37.91 2.85
4066 6513 8.414629 AAATGCTTCAACCTAAAAAGATCTCT 57.585 30.769 0.00 0.00 0.00 3.10
4067 6514 9.481340 AAAAATGCTTCAACCTAAAAAGATCTC 57.519 29.630 0.00 0.00 0.00 2.75
4068 6515 9.481340 GAAAAATGCTTCAACCTAAAAAGATCT 57.519 29.630 0.00 0.00 0.00 2.75
4069 6516 9.260002 TGAAAAATGCTTCAACCTAAAAAGATC 57.740 29.630 0.00 0.00 32.39 2.75
4074 6521 8.672815 CCTTTTGAAAAATGCTTCAACCTAAAA 58.327 29.630 0.00 0.00 43.29 1.52
4075 6522 7.281999 CCCTTTTGAAAAATGCTTCAACCTAAA 59.718 33.333 0.00 0.00 43.29 1.85
4076 6523 6.765512 CCCTTTTGAAAAATGCTTCAACCTAA 59.234 34.615 0.00 0.00 43.29 2.69
4077 6524 6.287525 CCCTTTTGAAAAATGCTTCAACCTA 58.712 36.000 0.00 0.00 43.29 3.08
4078 6525 5.125356 CCCTTTTGAAAAATGCTTCAACCT 58.875 37.500 0.00 0.00 43.29 3.50
4079 6526 4.275689 CCCCTTTTGAAAAATGCTTCAACC 59.724 41.667 0.00 0.00 43.29 3.77
4080 6527 4.261155 GCCCCTTTTGAAAAATGCTTCAAC 60.261 41.667 0.00 0.00 43.29 3.18
4081 6528 3.882288 GCCCCTTTTGAAAAATGCTTCAA 59.118 39.130 0.00 0.00 42.21 2.69
4082 6529 3.475575 GCCCCTTTTGAAAAATGCTTCA 58.524 40.909 0.00 0.00 33.48 3.02
4086 6533 2.268762 TGGCCCCTTTTGAAAAATGC 57.731 45.000 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.