>input_sequence_35301
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---------------------------------------------------ATGCTCGACATCCAGAAGCGGCGCGTCCA
GCTTCTGCTCTTCGTCGCCGGCGTGCTCGCCCTCAGCATGACAGGCATGCTCCCCGATCCGCCCTCCGTTTTTTTTTTCA
ATTACTGTTAACCAGTTCGTCGAGCGAGCAGGTGAATACTTCTTCGTAGAGCGGCGGATCACTGCGCGCGCTTGCGCGTG
TAGTTTATGGCGCCTTTCGGCCTTTGATTCGGCGATTTTGGGTGGTGGGGGTTGTTTCCTAGTGAAGAAGAAGTGGGTGC
GCATTTGGCTGGTTTCGAGTGGG-ATGCGTCTGATCTTGGGTTTCTAGACGACGGTAATTGCTACGAAGAGCGAATGACT
CGGTCAATTGGAGGTATA--------------CTTCGTAGGTCTGGGTTGATGTGGGCGGTGGAATTTGAAGTG------
---------TGAGTGCCTTAATTCAGAAAGCCATAGATTTCGAGTGAAGTCG-----GTACTAACTTGTTAAGGATTGAT
TGCTTAACTGCTTATAAGATGGTGATTAGCCTCTGCTCATAAGGTTAAGTTGAACAAAAAATAAGAACAACTGAACACTG
TCTAGCATGGTTGGTAGTTCATACTGATTGA----TTCATGAAAACACTTTATATATATGAAC----------AAACAGT
CTGTCTGTCTCAGGGCTTGAAGGCAGCGGTGCATGCTCGCGTACTGTTATGACGAAGAACTTGGAGTAGCAATTTTTTTG
TCAGTTATATCGTTGTATTTAACTGGGACAGTGATTCTGTCTGGTACCATGAGTGTTCACATGCACAATTTACCCACATG
TTTCGCTTACTCGAAAATTCCC-GCATACT------GGGGGCTTGGCAAATGTTTGGAGTGCATTGGTGGCTGAAGCCAT
GGATGCAATTCATCATGTAAGTTTCTTCGATGGGATGGATAAAGTCACCCTGGAGACCGATTCCCTTGTGCTAAAAAATG
TTGTGACTAGCAATGCTCTGGACCTGTCGGAGAGTTGTGCGCTGGTGAAGGAGCTCAGGAGTAGCATC-TTTTATTTTGC
TTTCATTTGATAACTGTGATGTTGATTTGATTTCATCCCACAATAGTGTAACAAGTAGTGCATTTACTTGCAGCTAAGGA
TTGTATCAGGGATTTGGATGACCATGTACTGTGGACATCCAGTTTTCCTGCTGATATATCTTGTGTGGCTACTAGCGTTT
TTGCTATGTGCTCATGCTGATGTCTTCCTCTCAGAATTAACAAATAAAAGATCTCCATACTAAATTTTCAATCACTGGAT
CTATGAGTCTTACATTCTTTTGGAAAGGTAACTCTTGCCCTGTTGCTAAGTTGACATATGGGCAAGCCATGATCTTGTAG
AAAATGGCCGTATTGTAAGAATT--ATAAGGCACATTGATAGTTTAACATGGTATGCTATTGAATTGATATTGCTCTTGA
CATCCAAATTTTCTCCTAGATAGTATCTGATGATTTCATTTTGGAGAAGTAAGCCGGATGTATGTCTTT-GTAAATTAAG
CTTAATCAAAATTTGCAATTTGCAGCTGAGAAGTGCAGGGAACTTGTCGGAAAGGAGGCTGCATCAAAGAGTGGGCAGTT
CACATTCATGAACTGTTTCGATATGGGGTCGGGCAGCCTTGCATGCGCAGGGAAGGAGGGGGTGAAGCTGTATGTGAACA
ACCTGCGAAGCGCACACATAGAAACCGTGCGGCAGCGAGCCCTTGAGAAAGCGTTGGCTGATGCTTTGACAGAAGGCTTG
AGTCCTGCTGAGGCAGCCAAGCAAGCTCAGAAGATCGGGGCAAAAGCGACGAAGGTGGCCGCTCGTCAAGCGAAGAGGAT
ATTGGGGCCGATAATTTCCTGTGGCTGGGACTTCTTCGAGGCAATGTACTTTGGCGGAAGCATGACAGAAGGTTTCCTCC
GGGGCATGGGCACCTTATTCGGAACCTATGCGGGTGGTTTCCATGGCGAGGAGAGGCTGGGAAAGCTTGGCTATCTCGTT
GGAAGCCAGCTAGGCAGCTGGGTTGGGGGAAGAATCGGACTGATGGTCTATGATGTCATCAACGGGTTGAACTACATGCT
TGAGTTTGTCCGTCCAGAGGAGTATCGATCATCATCTTACGCAGCAGAAGAGGGCTCAGAGTATGCAGATAACTACAGAA
GTTCGTCTTACGTATCAGAAGAGGGCTCAGAGTATGCAGATAACTACAGAAGTCGCGAAGGATATGAGCCAACATACAGT
GAGACGCCAGAAGAGGC---GCAGGCGGAGGAGGATTCGGGGGGTTTCAGCTTGTTCTGA--------------------
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--
>chr4A_1_TraesCS4A01G120900
AGTCTAGTGTCACAGAGAATATACAAAAATTGAAATGAGAGTGTTGAGAAATTATCGACTCGCTCAAAATCGGCTGACCC
TT---CAATTAAAGACCTCAGTTGAATGTTGACTGTTTAAAACTAGGGAGAATAGTGTTATAGTATATAGTATAAAAGCA
TTGAAC-GAGAGAGTGTTAGAAATTGTTGACTCGATCAAAATTGAGTGATCCAATTTTAATTGAAGACCTCAATTGAATG
TTGACTTTTAAAACTAGGGAGCATAGTGTTATATATG-------------------------------------------
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--------------------------------------------------------------------ATACTATGCATC
TCTATTTTTTATTTCAACTTTCTTAGCTTTTTACATTCGATCACACTTTTTCT-CTCAAGCACATGTCTCTTGTGGAGGA
TTCTGCTTCCCTATCCAAACCTACTTTTTCTGACATCTTATCCTACATGACACGTGGGGCATCACCATAAGACTATGCAT
TGACTATGCCCTAATAATTGGCCTAATTTAATCTATACTATGCTCACTTGCCGGTGACAAACCAAAATAAGATAAAAAGT
AAAGTCGTTTTAAAAGTGT-----------------------GAGTAGTGTCAAAAAGTTCAGATGGAGATAAAAGATTT
CAATACTTTGCT-AATCATGTTATTTTAAAGAAGTCTTTGACACAGTGGCTTTTGAAATACGAGCTCAAAATAATTTTTT
TGCTACTCCGGTCAATTCAAATTCATTGACGCAGCTTTAGTA------------------CAATTTAGACGACCTAC---
CTAGAGTTTTGTGAATTCCATTCAAACAAGTCGGGCGACTGGGCCCATGGCGTGAGGACCCACCCAACGCCGTG------
---TCCGGGTAACGCGTATCGCCACGCGGCAGCGGCGAATGGACCCCCTGCGGCCGTTCTTTTTTCTCTCTCTCTTTTCT
TCCCAAGGAACCTGCCATTCTTTTCTCTCGTTATTATTCGTTTCTTCCCCACTTCCTCCTCCTCCTCCTCCCACGAGAGG
AGAGATCCTTGGTCTGCTGCCCG-CCGAGCCGAGCGTGGGAGGCCGCGAAGATGCTCGACATCCAGAAGCGGCGCGTCCA
GCTTCTGCTCTTCGTCGCCGGCGTGCTCGCCCTCAGCATGACAGGCATGCTCCCCGATCCGCCCTCCGTTTTTTTTTTCA
ATTACTGTTAACCAGTTCGTCGAGCGAGCAGGTGAATACTTCTTCGTAGAGCGGCGGATCACTGCGCGCGCTTGCGCGTG
TAGTTTATGGCGCCTTTCGGCCTTTGATTCGGCGATTTTGGGTGGTGGGGGTTGTTTCCTAGTGAAGAAGAAGTGGGTGC
GCATTTGGCTGGTTTCGAGTGGG-ATGCGTCTGATCTTGGGTTTCTAGACGACGGTAATTGCTACGAAGAGCGAATGACT
CGGTCAATTGGAGGTATA--------------CTTCGTAGGTCTGGGTTGATGTGGGCGGTGGAATTTGAAGTG------
---------TGAGTGCCTTAATTCAGAAAGCCATAGATTTCGAGTGAAGTCG-----GTACTAACTTGTTAAGGATTGAT
TGCTTAACTGCTTATAAGATGGTGATTAGCCTCTGCTCATAAGGTTAAGTTGAACAAAAAATAAGAACAACTGAACACTG
TCTAGCATGGTTGGTAGTTCATACTGATTGA----TTCATGAAAACACTTTATATATATGAAC----------AAACAGT
CTGTCTGTCTCAGGGCTTGAAGGCAGCGGTGCATGCTCGCGTACTGTTATGACGAAGAACTTGGAGTAGCAATTTTTTTG
TCAGTTATATCGTTGTATTTAACTGGGACAGTGATTCTGTCTGGTACCATGAGTGTTCACATGCACAATTTACCCACATG
TTTCGCTTACTCGAAAATTCCC-GCATACT------GGGGGCTTGGCAAATGTTTGGAGTGCATTGGTGGCTGAAGCCAT
GGATGCAATTCATCATGTAAGTTTCTTCGATGGGATGGATAAAGTCACCCTGGAGACCGATTCCCTTGTGCTAAAAAATG
TTGTGACTAGCAATGCTCTGGACCTGTCGGAGAGTTGTGCGCTGGTGAAGGAGCTCAGGAGTAGCATC-TTTTATTTTGC
TTTCATTTGATAACTGTGATGTTGATTTGATTTCATCCCACAATAGTGTAACAAGTAGTGCATTTACTTGCAGCTAAGGA
TTGTATCAGGGATTTGGATGACCATGTACTGTGGACATCCAGTTTTCCTGCTGATATATCTTGTGTGGCTACTAGCGTTT
TTGCTATGTGCTCATGCTGATGTCTTCCTCTCAGAATTAACAAATAAAAGATCTCCATACTAAATTTTCAATCACTGGAT
CTATGAGTCTTACATTCTTTTGGAAAGGTAACTCTTGCCCTGTTGCTAAGTTGACATATGGGCAAGCCATGATCTTGTAG
AAAATGGCCGTATTGTAAGAATT--ATAAGGCACATTGATAGTTTAACATGGTATGCTATTGAATTGATATTGCTCTTGA
CATCCAAATTTTCTCCTAGATAGTATCTGATGATTTCATTTTGGAGAAGTAAGCCGGATGTATGTCTTT-GTAAATTAAG
CTTAATCAAAATTTGCAATTTGCAGCTGAGAAGTGCAGGGAACTTGTCGGAAAGGAGGCTGCATCAAAGAGTGGGCAGTT
CACATTCATGAACTGTTTCGATATGGGGTCGGGCAGCCTTGCATGCGCAGGGAAGGAGGGGGTGAAGCTGTATGTGAACA
ACCTGCGAAGCGCACACATAGAAACCGTGCGGCAGCGAGCCCTTGAGAAAGCGTTGGCTGATGCTTTGACAGAAGGCTTG
AGTCCTGCTGAGGCAGCCAAGCAAGCTCAGAAGATCGGGGCAAAAGCGACGAAGGTGGCCGCTCGTCAAGCGAAGAGGAT
ATTGGGGCCGATAATTTCCTGTGGCTGGGACTTCTTCGAGGCAATGTACTTTGGCGGAAGCATGACAGAAGGTTTCCTCC
GGGGCATGGGCACCTTATTCGGAACCTATGCGGGTGGTTTCCATGGCGAGGAGAGGCTGGGAAAGCTTGGCTATCTCGTT
GGAAGCCAGCTAGGCAGCTGGGTTGGGGGAAGAATCGGACTGATGGTCTATGATGTCATCAACGGGTTGAACTACATGCT
TGAGTTTGTCCGTCCAGAGGAGTATCGATCATCATCTTACGCAGCAGAAGAGGGCTCAGAGTATGCAGATAACTACAGAA
GTTCGTCTTACGTATCAGAAGAGGGCTCAGAGTATGCAGATAACTACAGAAGTCGCGAAGGATATGAGCCAACATACAGT
GAGACGCCAGAAGAGGC---GCAGGCGGAGGAGGATTCGGGGGGTTTCAGCTTGTTCTGAAACTGCAAGCTTGGATATCA
GCCGACTTACACCGGGATGGTAGCAGGCCAGCAAGCAG----CACTTGTACTGAACTTG-TTTTTGCATGTCTAGATGGG
GAAGTGATTCTTCTCTGTGATTCTTGTATGGCCATTGTGTATAATAGAAACGTTTGCATGCAACCACGGCTCTGGCTGCA
TGGTCTAAAGAG------CTAAACATGAACAAAGAACACA---------TCTGGAGTA-----TCTTGTAGCATACTTGG
GGAACACAGGTCTCTAGAGTGAATTTGCTGTATACGTGTCTGTCAGTTCGTTTATAATTTAATTTAACATAGTTGGGCAG
ATGCCCCTTCATTTAGCAAGAATATCTTCAGGATTAGCTCCTTTCTACTCTTTTTTTTTTTTGACTTGTTGCACAATTTA
TTTGCAGTTTGCTTCACACCTCGTTAACTTATCTCTACTATCAATATCAAAGGGGAGTCTATAGTCGTCGTGATCAGGAA
AAGAT-----------AAACT----------------------------GGAATCCCGGAACCAA------TCATTTGTC
CAGTGTCACCGTTTGGTCAGCTCATGCCGCAAGCAACCCGACATCGCCGCATAAACTTCCGGAAAAGTTTCGTGAAATGT
CGATAGCATGACTCCATTCCGAGTAAAG----------------TCGGAGCAGATTCCAGTTAGTGATGGTTGGACCTGG
ATGTACTTTGTTGTTTCTAGTGTTTTTTGTACTGCCACGACGGATGATGAACAGGTCAGAAGTTTTCTCGCAAAAAAAAA
ATCAACCCAAATCGTACTATACTAGTTCTGTGTGTTTG------------------------------------------
----AAAAATGTATTGAACATTTTTATATTTAAGAGATCTTTTTAGGTTGAAGCA-TTTTTCAAAAGGGGCCAAAATATC
CTTTTGTCCACC----AAAGAAAAGGTATCCCACCATCCGTCCTGCACTATTCTATGCTATCTACTACGTGTACT-----
TGTATAGAAGAAGCAGGGAGGGAGGCCGAGAAATCATGTCCGCCCTTTCCATCCTCCACAGGGCTTGCCTCCGACTCGCC
CT
>chr4B_1
AGTCTAGTGTTACAGCGG-TATAAAAGAATTG-AACGAGAGTGTTGAGAAATTATTGACTCTGTCAAAATCCGGTGACCC
AATTCCAACTAAAGACCTCAATTGAATGTTGGCTCTTTGAAACTAGGGAGCATAGTGTTATAGTGTATAGTATAAAAAAT
TGAACGAGAGAGTGTTG-AGAAATTGTTGACTCGGTCAAAATTGGGTAATCCAATTTTAATTGGAGACCTCAATTGAATG
TTCGCTTTTAAAACTAGGGAGCATAGTGTTATACTAGAAGGGTTGGGCGCGCTTTGCCGCGCCGTTGAATTTGTTGTGAT
TCTTAAATTTCTTTACTTGCTCTATTTCAAAATATATGGTGTATTACTTTTTTGAAAAGTCTAAGCTCTTTAAATTTGAT
CAAATTTATAAAAAAATATATCAACATTCATAATATCAAAACGGTGATATTAGCTTCATCATGAAATGGATTTTCATTTT
TTTATTTAATATTGTGGATGTCGATATTTTTTACTCTGAACTTGGTCAAAGTTAAAGAAATTTCACTGAAAAAGGGTTCC
CCCGCTTTGTATTACAAAGCAACCAACCGATACAGCCAAGGATAGGTGCTGGGGCGTAAGCAGCACAATCACTCTCAAAA
GAAACGAAAGAGAAACATCAAGAGAAAAGAATGCCGACAATGGTGGATCGACGGAAACGAAGAAGCTTCATGACCACTGC
GTCCACCGAAGATCTCCCACCAAGCTCCAAGGCTCCGAAGCACCGATACCCATCAACACCTCCAAAAAGGACCGCGACGA
TGATGACGCTGCTGCCAAGGGTTTCCCCCGATACACGACGAGGCGAGAGGAAGGGTTGCCCCCGACGCCCTCCAGGAAGG
TCCGGCGGCACCCATCGACGTCGTCGCGTCGGTGTCGGACAGGCCGACAGGGGTTTTCCCCGATCCCAACCTTCACCTCG
GATGCTCCAGAGCCTGCCACCAAACCGACCACCATCTTGCGCCAACATGGTCAAGAAGCCTCCACATCGTCTCACCACTT
CACCACGAAATGAGGTCTGCACAACAAGGAATAGGAGTCGGGACTAGGGGCCGCAGCACCGTCGGCACGCGGGAGGGCAC
AACCTCCATCGTCAACGACAATAGCCGACCGTACACAATAGGAGGAGCATACCAGGGCTGTGGGCCCACAGGCCCGACCG
GGATCTTCATGCCCGTAAAGCTCCCGCCACCGCGCTGCAGCAGGCACGCCGTCGGCGTCGCCGCCCCCCGTCCGAGCTCC
TCCTCCTCCTCACCACACAGACAACGACGAAGCCACGCCGGGGACCGGCTCGCTAGGACCCATATGGGGCCCGCAGGGCC
CAGATCTGGGCCGGGGGCGCGCCGCCAGCCAACCCGCGCCACCACGCCGTCTCGCCGCGAAGGGGCCGCACCACCACCTC
GCGTGCCGCCGGCCACTTCCGCCGGGTCGCCGGGCCGTCGTCGAGCCGAGGAGCACCGCCGTCGCCCCATGCCCCGGGCA
GGGAGCCGCGCGCGGGGGGACAGGCAGGCCCTGCCGCCGCCGACACCACCGGGCCAAGCGCTTGGGGCGCCCGTCAGCGG
CGGCAGGGAGGAAAGGGGTAAGGGGGGGCGAAGGTGGAGGAGCTCACGCCGCCTCGGCCACCTCCCAGGGAGGCGACATG
GGGCGGATCCGGGAGGAGGGAGGGGGGAGGGAAGGGGGCGGGGGTGGCCGGCGGCCGGCGGCGGCAGGGGCCTAGGAAGG
CCGGCAGCGGCAGGGGGAGGGTGGGAGGAGACCTAGCTCACGGGGAGTTAAAGAAATTTGACTTTCCAAAGAACTAACAA
TCCATATATTTTGAAACTAATGAAACATTTAGTTTGGCCGGTGGGGGAAGGCGATGAAGCGTGTTTTATGTTTATATATA
ATGCGGTTATTTGGTAGGAATTCGCGGTGTGATTCTGTGCTATCCGCTAATCAACCCATATTTATGTGGGGATATTTTTT
CATCAGTGGTTGCATGTATTGTATTCGTGCTATAGTATCACATGGTGGTGTATTTTTCTAGGTGATGGGAGTCTACAAGG
GATTGATATGTTTTTATAGGCCGGTTGTTGCTGATTGATTTGAAAAATCTTTGGTCTGATCAAAACAGTAAAACAAATCC
AAAATTGAATACCTCAATCAAATGAAAGAGCTTTAAAATAAGGGAACATAATGAATTAAAAATAATTAGATGGGAGACCC
CCTTGAGAAATTGTTGACCTAGTCAAAATCAGGTGACTCAATTCTAAATTGTAGTCTTAATTAACTGTGAAGATTAAAAA
TTAGAAAGCCCAGTGTATTGTACAAAAAAATTAAATGAGAGAGTTTTGAGAAATTGTTGACCAAGTCAAAATTGGGTGGC
CAAATTTCAATTGGAGACTTCAATTAATTGTGAGGCCTCCAATTCTAGGGAGCTTCGTGATATAGTATATACGATGCATC
TCTACTCTTCATTTCAACCTTTTCAGCTTTTTACATCTGATCACACTTTTTTCCCCCAAGCACCTGCCTCGTGCGGCGGA
TTCCGCTTCCCTATCCAAACCTACTTTCCTTGACAGCCGATCCTACATGACACGTGGGGCATCACCATGAGACTATGCAT
TGGCCATGCTCTAATACTTGGACTAGTTTAATCTATACTACACCCACTTGCCGGTGACAAACCAAAAA------------
-----------AAAAAAGT-----------------------GAGTAGTGTCAAAAAGTTTAGATGGAGATAAAAGATTT
CAATACTTTGCT-A-TCATCTTATTTTAAAGAAGTCTTTGAAACAGTGGCTTCTGAAATATGAGCTCAAAATAAAATTTT
TGCTACTCCGGTCAATTCAAATTCATTGAGGCAGCTC----------------------------TAGATGACCTAC---
CTAGAGTTTTGTGAATTCCATTCAAACAAGTCGGGCGACTGAGCCCATGGCGTGAGGACCCACCCAACGCCGTGTCCCCT
CCTTCGGGGTAACGCGTATCGCCACGCGGCAGCGGCGAATGGAACCCCTGCGGCCGTTCTTTTT----TCTCTCTTTTCT
TCCCAAGGAACCTGCCATTCCTTTCTCTCGTTATTATTCGTTTCTTCCCCACTTCCTCCTC---CTCCTCCCACGAGAGG
AGAGATCCTTGGTCTGCTGCGCGCCCGAGCCGAGCGTGGGCGGCCGCGAAGATGCTCGACATCCAGAAGCGGCGCGTCCA
GCTTCTGCTCTTCGTCGCCGGCGTGCTCGCCCTCAGCATGACAGGCATGCTCCCCGATCCGCCCTCCGTTTTTTTTCAAT
TA---TGTTAACCAGTTCGTCGAGCGAGCAGGCAAATACTTCTTCGTAGAGCGGCGGATCGCTGCGCGCGCTTGCACGTG
TAGTTTATGGCGCCTTCCGGCCTTTGATTCGGCGATTTTGGGTGGTGGGGGCTGTTTCCTAGT---GAAGAAGTGGGTGC
GCATTTGGCTGGTTTCGAGTGGG-ATGCTTCTGATCTTGGGTTTCTAGACGACGGTAATGGCTACGAAGAGCGAATGACT
CGGTCAATTGGACGTATA--------------CTTCGTAGGTCTGGGTTCATGTGTGCGGTGGAATTTGTAGTGGACACA
AGGAAGGAATGAGTGCCTTAATTCAGAAAGCCACAGATTTCGCGTGAAGTGAAGTCAGTACTGACTTGTTAAGGATTAT-
---TTAATTGCTTATAAGATGGTGATTAGCCTCTCCTCAGAAGGTTAAACTGAAC-AAAAATAAGGACAACTGAACACTG
TCTAGCATGA----TAATTCATACTGATTGACTCATTCATGAAAACACATTATATGTATGAACCCAGCAACACAAACAGT
CTGTCTGTCTCGGGCTTGAATGCG-----------------------------GAAGAACTTGGAGTAGCAATTTTTTTG
TCAGTTATATCATTGTATTTAACTGAAACAGTGATTCTGTCCGATACCATGAGTG--CACATGCACAATTTACCCACATG
TTTTTCCTTTCTCAAGTTTTTCTGCATACTGTTTAAGGGGGCTTGGCAAATGTTTGGAGTGCATTGGTGGC-GAAGCCAT
GCATGCAATTCATCATGTAAGTTTGC----TGGGATGGATAGAGTCACCCTGGAGACTGATTCCCTTATGCTAAAAAATG
CTGTGACTTGCAATGCTCTGTAACTGTCGGAGAATTGTGCGCTGGTGAAGGAGCTCAGGATCGTAGCAGTTTTTTTTTGC
TTCCATTCGGTAACTGTGATGTTGATTTGGTTTCATCCCATGATAGTGTAACAAGTAGTGCATTTACTTGCAGCTAAGGA
TTGTATCAGGTATTTGGAGGATCATGTAGTGTGGACATCTAGTTTTCCTGCTGATATATCTTGTGTGGTTACTAGCGTTT
TTGCTATGTTCTCATGCTGATGTGTTCCTCTCAGAATTAACAAATAAAAGATCTCCATACTAAACCTTCAATCACTGGAT
CTATGAGTCTTACATTCTTTTGGAATGATAGCTCTTGCCCTGTTGCTATGTTGACATATTGGTAAGCCATGATATTGTAG
AAAATGGCGACATTGTAAGAATATAATAAGGCACATTGATAGTTTAACTTGGTATGCTATTGAATTGATATTGCTCTTGA
CATCCAAATTTTCTCCTAGATAGTATTTGATGATTTCATTTTGGAGAAGTAAACCGGATGTATGTCTTT-GTAAATTAAC
CTTTATCAAAATTTGCAATCTGCAGCTGAGAAGTGCAGGGAACTTGTCGGAAAGGAGGCTGCATCAAAGAGTGGGGAGTT
CACACTCATGAACTGTTTTGATATGGGGTCAGGCAGCCTTGCATGCGCGGGGAAGGAGGGGGTGAAGCTGTATGTGAACA
ACCTCCGAAGCGCACACATGGAAAACGTGCGGCAGCGAGCCATCGAGAAAGCGTTGGCTGATGCTGTGATAGAAGGCCTG
AGTCCCGCTGAGGCAGCCAAGCAAGCTCAGAAGGTCGGGGCAAAAGCGACGAAGGTGGCCGCTCGTCAAGCGAAGAGGAT
ATTGGGACCGATAATTTCCTCTGGCTGGGACTTCTTCGAGGCAATGTACTTTGGCGGAAGCATGACTGAAGGATTTCTAC
GGGGCACGGGCACCTTATTCGGAACCTATGCGGGTGGTTTCCATGGCGAGGAGAGGCTGGGAAAGCTTGGCTATCTCGTT
GGAAGCCAGCTAGGCAGCTGGGTTGGGGGAAGAATCGGACTGATGGTTTACGATGTCATCAACGGGTTGAACTACATGCT
TGAGTTTGTCCGTCCAGAGGAGTACCGATCATCATCTTATTATGAC----------------------------------
--------------TCAGAAGAGGGCTCAGAGTATGCAGATAACTACAGAAGTGGCGAAGTTTATGAGCCAACATACAGT
GAGACGCCAGAAGAGGC---GCAGG---AGGAGGAATCGGGGGGTTTCAGCCTGTTTTGAAACTTGAAGCTTGGATATCA
GCCGACTTACACTGGGATGGCAGCAGGCCAGCAAGCAAGCACCACTTATACTGAACTTGTTTTTTGCATGTCTAGATGGG
GAAGTGATTCTT-------------GTATGGCGATTGTGTATAATAGAAACGTTTGCATGC-------------------
-------------------TGAACATCAACAAAGAACACA---------TCTGGGAGTATCTTGTAC-TAGCATACTTGG
GGAA-ACAGGTCTCTAGAGTGAATTTGCTGTATATGTGTCTGTCAGTTCGTTTATAATTTAATTTAACATAGTTGGGCAG
ATGCCCCTTCATTTAGCAAGAATATCTTCAGAATGAGCTCCTTTCTACTGTA-----TGTTTTACTTGTTGCACGATCGA
TTTTCAGTTTGCTTCACAACTCTTTAACCAATCTCTACTACTCCCTCCA-TTCCATACTTCGTATTGAAATCTCTAGAAG
AAGGGCTTATATTTAGAAACG----------------------------GGAATCCCGGAGCCAAAAT---TCATTTGTC
CACTGTCGCCGTTAGGTCAGCTCATGCCGCAAGCAACCCGACATGGCCACGTAAACTTCCACAAAAGTTTCGTGATATGT
CGATAGCATGACTCCATTCCGATTAAAGAGGATGATTTGTACACTCGGGGCAGATTCCAGTTAGCGACTGGAGTTTTGTG
TCG--------------------------------------------------------------------------AAA
TCCAACCCAAATTGTACTAGCAGATTCTCAAATTATCAAACCGACAAAAAGGCCAGGATCCTCAAA------TTATCAAA
GCACAAAAATCAATTCAACATTTTTCATATTTCATTATTAAGA------GAAACATTTTTCAAAAAGGGGCCAAAATATC
TTTTTGTCCACCAAAGAAAGAAAAGGTATCCCACCATCCGTCCTGCACTATTCTATGCTATCTACTACGTGTACTGTATC
TGTATAGAAGAAGCAGGGCGGGAGGCCGAGAAATCATGTCCGCCCTTTCCATCCTCCACAGGGCTTGCCTCCGACTCGCC
CT
>chr4D_1
AGTCTAGTGTTATAGAGAATATAAAAGAATTG-AATGAGAGTGTTGAGAAATTATTGACTCGGTCAAAATCGAGTGACCC
AATTCCAATTAAAGATGTCAATTGAATGTTGGCTCTTTAAAACTAGGAAGCATAGTGTTATAGTGTATAATATAAAAGAA
TTGAAC-GAGAGTGTTG-AGAAATTGTTGATTCGGTCAAAATCGGGTTATCCAATTTTAGTTGGAGACCTCAATTGAATG
TTGGCTTTTAAAACTAGGAAGCATAGTGTTATATATG-------------------------------------------
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--------------------------------------------------------------------AT-----GCATC
TCTACTCTTTA----------TTCAGCTTTTTACATCCGATCGCACTTTTTCT-CCCAAACACCTGCCTTTTGTGGAGGA
TCCTGCTTCCCTATCCAAACCTACTTTCTCTAACATCCGATCCTACATGACATGTGGGGCATCACCATAAAACTATGCAT
TGGCCATGCCCTAATACTTGGCCTAGTTTAATCTATACTACGCTCACTTGCCGGTGACAAACCAATAA------------
-----------ATAAATAAAAGTAAAGTCGTTTTAAAAGTGGGAGTAGTGTCAAAAAGTTCAGATGGAGATAAAAGATTT
CAATGCTTTGCTAA-TCATGTTATTTTAAAGAAGTCTTTGAAACAGTTGCTTCTGAAATATGAGCTCAAAATAAATTTTT
TGCTACTCCGGTCAATTCAAATTCATTGACGCAGCTTTAGTACGTATTTGGATATACGTACAATTTAGATGACCTACCTA
CTAGAGTTTTGTGAATTTCATTCAAACAAGTCGGGCGACTGGGCCCATGGCGTGAGGACCCACCCAACGCCGTGTCC--T
CCTTCCGGGTAACGCGTATCGCCACGCGGCAGCGGCGAATGGAACCCCTGCGGCCGTTCTTTTCTCTCTCTCTCTTTTCT
TCCCAAGGAACCTGCCGTTCTTTTCTCTCGTTATTATTCGTTTCTTCCCCACTTCCTCCTC------CTCCCACGAGAGG
AGAGATCCTTGGTCTGCA--GCGCCCGAGCCGAGCGCGCGCAGCCGCGAAGATGCTCGACATCCAGAAGCGGCGCGTCCA
GCTTCTGCTCTTCGTCGCCGGCGTGCTCGCCCTCAGCATGACAGGCATGCTCCCCGATCCGCCCTCCGTTTTTTTCTCCA
ATTACTGTTAACCAGTTCGTCGAGCGAGCAGGTGAATACTTCTTCGTAGAGCGGCGGATCGCTGCGCGCGCTTGCGCGTG
TGGTTTATGGCGCCTTTCGGTCTTTGATTCGGCGATTTTGTGTGGTGGGGGCTGTTTCCTAGT---GAAGAAGTGGGTGC
GCATTTGGCTGGTTTCGAGTGGGGATGCGTCTGATCTCGGGTTTCTGGACGACGGTAATGGCTACGGAGAGCGAACGACG
GGTTCAATTGACGATGGTATAGTGCTACAATGCTTCCTAGGTCTGCGTTGATGTGGGCGGTGGAATTTGAAGTGG-----
----------GAGTGCCTTAATTCAGAAAGCCATAGATTTCGAGTGAAGTCA----------GACTTGTTAAGGACTAT-
---TTAACTGCTTATAAGATGGTGATTAGCCTCTGCTCATAAGGTTAAGTTGAACAAAAAATAAGAACAACTGAACACTG
TCTAGCATGGTTGGTACTTCATACTGATTGA----TTCATGAAAACACATTATATGTATGAAC----------AAACAGG
CTGTCTGTCTCAGGGCTTGAAGGCAGCGTCACATGCTCGCATACTGTTATGACGAAGATCTTGGAGTAGCAATTTTTTTG
TCAGTTATATCGTTGTATTTAACTGGAACAGTGATTCTGTCTGGTACCATGAGTGTTCACATGCACAATTTACCCACATG
TTTCGCTTACTCGAAAATTCCC-GCATACTGTTTAAGGGGGCGTGGCAAATGTTTGGAGTGCATTGATGGCTGAAGCCAT
GCATGCAGTTCATCATGTAAGTTTGT----TGGGATGGATAGAGCCACCCTGGAGACCGATTACCTTATGCTAAAAAATG
CTGTGAGTAGCAATACTCTGGACCTGTCGGAGAATTGTGCGCTGGTGAAGGAGCTCAGGAGTAGCAT----TTTTTTTGC
TTCCATTCAGTAACTGTGATGATGATTTGATTTCATCTCACAATAGTGTAAAGTGCA-----------------------
---------------------------------GACATCCAGTTTTCCTGCTGGTATACGTTGTGTGGCTATTAGCATTT
TTGCCATGTGCTCATGCTGATGTGTTCCTCTCAAAATTAACAAATAAAAGATCTCCATACTAAATCTTCAATCACTGGAT
CTATGAGTATTACATTCTTTTGGAAAGATAACTCTTGCCCTGTTGCTAAGTTGACACATTGGCAAGCCATGATATCGTAG
AAAATGGCCACATTGTAAGAATA--ATAAGGCACATTGACAGTTTAACATGGTATGCTATTGAATTGATATTGCTCTTGG
CATCCAAATTTTCTCCTAGATAGTATCTGACGATTTCATTTTGGAGAAGTAAACTGGATGTATGCCTTTTGTAAATTAAC
CTTAATCAAAATTTGCAATCTGCAGCTGAGAAGTGCAGGGAACTTGTCGGAAAGGAGGCTGCATCAAAGAGCGGGCAGTT
CACATTCATGAACTGTTTCGATATGGGGTCAGGCAGCCTTGCATGCGCGGGGAAGGAGGGGGTGAAGCTGTACGTGAACA
ACCTCCGAAGCGCACACATGGAAAACGTGCGGCAGCGAGCCATCGAGAAAGCATTGGCTGATGCTGTGATAGAAGGCCTG
AGTCCCGCTGAGGCAGCCAAGCTAGCTCAAAAGGTCGGGGCAAAAGCGACGAAGGTGGCCGCTCGGCAAGCGAAGAGGAT
ATTGGGGCCGATAATTTCCTCTGGCTGGGACTTCTTCGAGGCAATGTACTTCGGCGGAAGCATGACTGAAGGATTTCTAC
GGGGCACGGGCACCTTATTCGGAACCTATGCGGGTGGTTTCCATGGCGAGGAGAGGCTGGGAAAGCTTGGCTATCTCGTT
GGAAGCCAGCTAGGCAGCTGGGTTGGGGGAAGAATCGGACTGATGGTCTACGATGTCATCAACGGGTTGAACTACATGCT
TGAGTTTGTCCGTCCAGAGGAGTACCGATCATCATCTTATTATGAC----------------------------------
--------------TCAGAAGAGGGCTCAGAGTATGCAGATAACTACAGAAGTGGCGAAGGAGATGAGCCAACATTTAGT
GAGACGCTAGAAGAGGCGCAGCAGG---AGGAGGAATCGGGGGGTTTCAGCTTGTTCTGAAACTTGAAGCTTGGATATCA
GCCGACTTACACTGGGATGGCAGCAGGCCAGCAAGCAAGCACCACTTATTCTGAACTTG-TTTTTGCATGTCTAGATGGG
GAAGTGATTCTTCTCTGTAATTCTTGTATGGCCATTGTGTATAATAGAAACGTTTGCATGCAATCATGGTTGTGGCTGCA
TGGTCTACAGCAGAGGTACTGAACATCAACAAAGAAGAAACACATCTGGTCTGGGAGTATCTTTCTTGTAGCATACTTGG
GGAA-ACAGGTCTCTAGAGTGAATTTGCTGTATATGTGTCTGTCAGTTCGTTTATAATTTAATTTAACATAGTTGGGCAG
ATGCCCCTTCATTTAGCAAGAATGTCTTCAGAATGAGCTCCTTTCTACTGTG-----TTTTTTACTTGTTGCAC------
----------------------GTTAACCTATCTCTAGTACTCCTTCCGTTTCCATAGTTCGTATTGAAATATCTAA---
AAGGGCTTATATTTAAAAACGGAGGGAGTATTAGAGGAGAGTATAAGCTGGAATCCCGGAGCCAATCATTATCATTTGTC
CACTGTCGCCGTTAGGTCAGCTCATGCCGCAAGCGACCCGACATCGTCACATAAACTTTCACAAAAGTTTCGTGATATGT
CGATAACATGACTCCATTGCGATTAAAGAAGATGATTTATACGCTCGGAGCAGATTCCAGTTGGCGACTGGAGTTTTCAT
CCGAGGCTTGTTGCTTGTGTC--------------------------------------------------------AAA
ATCAACCCAAATTGTACTACCAGATTCTCAAATTATCAAACCGACAAAAAAGCCAGGATCCTCAAATTATTATTATCAAA
GCACAACAATCAATTCAACATTTTTCATATTTTATTACTAAGA------GAAACA-TTTTTCAAAAGGGGCCAAAATATC
TTTTTGTCCACCAAAGAAA----AGGTATCCCACCATCCGTCCTGCACTATTCTATGCTATCTACTACTCGTACG-----
TGTAT---AGAACAAGGGAGGGAGGCCGAGAAATCATGTCCGCCCTTTCCATCCTCCACAGGGCTTGCCTCCGACTCGCC
CT
>SNPs
----------S------------S--S-----S----------------------S------S----------S------
SS------------------S----------S--S---------------S-------------S-------------S-
------------S--SSS----------------S---------S--S---------------S----------------
---S----------------------------------------------------------------------------
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------------------------------------------------------------------------S-------
----S-S-----------S--S-S------------S------------------S-------S--S-------------
---------------------------S---------SS-----------------------------------------
--S-S-----------S--------S--------------S--------------------------SSSSSSSSSSSSS
SSSSSSSSSSS----S----------------------------------------------------------------
--------------S--------------------------S----------S-------S-------------S-----
---------------------------------------------------------------------S----------
--------------------------------------------------------------------------------
-------------------------------------------S------------------------------------
-------------------------------------------------------------SSS----------------
--------------------S-------------------S---------------------------------------
-----------------------------------------------------------------------------S--
------------------------------------------------------------S-------------------
---------------------------------------------------S-----------SSS--------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
---------------------------------------------------S----------S--------------SSS
SSS-----------------------------------------------------------------------------
----------------S-------------------------------S------S------------------------
----------------------------SSS---------S---------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------------------------------------------------
-S----------------------S-SSSS-----------S-------------------------S------------
S--------------------------------S---------------------------------S-----S------
--S----S-S----------------------------------------------------------------------
----------S-------S--S------S---------------------------------------------------
-----------------------S-----------------------------------------S--------------
---------------------------S-------------------------------S-------------S------
---------SS-----------S---------------------------------------------------------
----------------------------------------------------S--------------------------S
-------------------S------------------------------------------------------------
------------------------------S-----------------S-------------------------------
----S--------------S----S----------------S-S---------------------S---S-------S--
-----S---------------------------S----------------------------------------------
--------------------S---------------------------------------------S-----S--S--S-
------S-------------------------------------------------------------------------
--------------------------------------------------S-----------------------------
------------------------S--------------SSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS---------------------------------------S--------------------------
-------------------------SSS-------S----------------------------SS--------------
------------S-------S----------------S---------S--------------------------------
------------------S--------------------------------------------S--S--S-S--------
-------S--SS--------S-----S---------------------------SSSS----------------------
----S-----------------------------S---------------------------------------------
-------------------------------S--S--------------S-SSSSSS-----S-----------S--SS-
---S--------------S---------S-----------SSSS-SS--SSSSSSSSSS-SSSS-S-SSS-SSSS--S-S
---SS---------------S---------------------------------------S-------------------
--S----S-----S----------------------------------S-----------SS-------------S----
----------------------S-----------------------------------------S--SS-SS-SSSSSS-
SS-SSSS------S--S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---
------------S------SSSS-S-SSSSSS-SS-SS------------------------------------------
----------SS---S---------SSSS--SSSSS--SSSSSSSSSSS---S---------------------------
S-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--
>forward_3182
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------------------------------------------TCTTCCCCACTTCCTCCTCC------------------
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--
>reverse_5207
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------TGGGCACCTTATTCGGAACC------------------------------------------------------
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--
>forward_4228
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------------------------------------------------CCTGGAGACCGATTCCCTTG------------
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--
>reverse_6004
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---GCAGTTTGCTTCACACCTCG---------------------------------------------------------
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--------------------------------------------------------------------------------
--
