Multiple sequence alignment - TraesCS4A01G120500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G120500 chr4A 100.000 2504 0 0 1 2504 148546753 148549256 0.000000e+00 4625
1 TraesCS4A01G120500 chr4D 92.530 1593 65 15 246 1830 323373334 323371788 0.000000e+00 2233
2 TraesCS4A01G120500 chr4D 88.869 557 20 11 1978 2504 323371804 323371260 0.000000e+00 647
3 TraesCS4A01G120500 chr4B 90.155 904 60 14 939 1830 403674708 403673822 0.000000e+00 1149
4 TraesCS4A01G120500 chr4B 93.578 545 27 6 244 784 403675638 403675098 0.000000e+00 806
5 TraesCS4A01G120500 chr4B 88.968 562 23 14 1979 2504 403673837 403673279 0.000000e+00 658
6 TraesCS4A01G120500 chr7A 92.453 212 15 1 9 220 91513422 91513632 4.050000e-78 302
7 TraesCS4A01G120500 chr7A 92.754 207 14 1 15 221 372648383 372648178 5.240000e-77 298
8 TraesCS4A01G120500 chr7A 91.469 211 17 1 10 220 303434216 303434425 3.150000e-74 289
9 TraesCS4A01G120500 chr7A 97.500 120 3 0 1829 1948 633416775 633416656 3.260000e-49 206
10 TraesCS4A01G120500 chr2A 91.743 218 17 1 5 222 535728474 535728258 4.050000e-78 302
11 TraesCS4A01G120500 chr2A 91.080 213 17 2 10 221 2855128 2855339 1.130000e-73 287
12 TraesCS4A01G120500 chr2A 97.500 120 3 0 1829 1948 758104863 758104982 3.260000e-49 206
13 TraesCS4A01G120500 chr6A 91.705 217 16 2 7 222 384090286 384090071 1.460000e-77 300
14 TraesCS4A01G120500 chr6A 91.509 212 17 1 10 221 564113878 564113668 8.760000e-75 291
15 TraesCS4A01G120500 chr6A 97.521 121 2 1 1829 1948 39064854 39064974 3.260000e-49 206
16 TraesCS4A01G120500 chr6A 93.284 134 8 1 1815 1948 115497477 115497609 1.960000e-46 196
17 TraesCS4A01G120500 chr1A 91.549 213 17 1 10 222 554036523 554036734 2.440000e-75 292
18 TraesCS4A01G120500 chr3D 90.698 215 18 2 10 224 70280435 70280647 4.080000e-73 285
19 TraesCS4A01G120500 chr7D 97.500 120 3 0 1829 1948 82851134 82851253 3.260000e-49 206
20 TraesCS4A01G120500 chr5A 97.500 120 3 0 1829 1948 218990161 218990042 3.260000e-49 206
21 TraesCS4A01G120500 chr5A 91.083 157 5 8 1829 1976 695327984 695328140 1.170000e-48 204
22 TraesCS4A01G120500 chr1B 97.500 120 3 0 1829 1948 94937613 94937494 3.260000e-49 206
23 TraesCS4A01G120500 chr1B 90.541 148 12 2 1829 1976 33033175 33033030 7.070000e-46 195


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G120500 chr4A 148546753 148549256 2503 False 4625 4625 100.000000 1 2504 1 chr4A.!!$F1 2503
1 TraesCS4A01G120500 chr4D 323371260 323373334 2074 True 1440 2233 90.699500 246 2504 2 chr4D.!!$R1 2258
2 TraesCS4A01G120500 chr4B 403673279 403675638 2359 True 871 1149 90.900333 244 2504 3 chr4B.!!$R1 2260

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.041982 GCCCCACCCCCTTAAAATCA 59.958 55.0 0.0 0.0 0.0 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1878 2133 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.0 0.0 0.0 0.0 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.243336 CTGTACTACGGACAAGACTTGC 58.757 50.000 15.24 7.93 0.00 4.01
22 23 2.029649 TGTACTACGGACAAGACTTGCC 60.030 50.000 15.24 15.07 0.00 4.52
23 24 1.339097 ACTACGGACAAGACTTGCCT 58.661 50.000 15.24 9.45 0.00 4.75
24 25 1.000955 ACTACGGACAAGACTTGCCTG 59.999 52.381 15.24 11.80 0.00 4.85
25 26 0.320421 TACGGACAAGACTTGCCTGC 60.320 55.000 15.24 1.33 0.00 4.85
26 27 1.302033 CGGACAAGACTTGCCTGCT 60.302 57.895 15.24 0.00 0.00 4.24
27 28 1.294659 CGGACAAGACTTGCCTGCTC 61.295 60.000 15.24 4.79 0.00 4.26
28 29 0.957888 GGACAAGACTTGCCTGCTCC 60.958 60.000 15.24 10.16 0.00 4.70
29 30 0.957888 GACAAGACTTGCCTGCTCCC 60.958 60.000 15.24 0.00 0.00 4.30
30 31 1.676967 CAAGACTTGCCTGCTCCCC 60.677 63.158 1.43 0.00 0.00 4.81
31 32 2.911926 AAGACTTGCCTGCTCCCCC 61.912 63.158 0.00 0.00 0.00 5.40
32 33 3.650950 GACTTGCCTGCTCCCCCA 61.651 66.667 0.00 0.00 0.00 4.96
33 34 3.635268 GACTTGCCTGCTCCCCCAG 62.635 68.421 0.00 0.00 0.00 4.45
45 46 4.864334 CCCCAGCGTGCTCCCATC 62.864 72.222 0.00 0.00 0.00 3.51
46 47 4.864334 CCCAGCGTGCTCCCATCC 62.864 72.222 0.00 0.00 0.00 3.51
47 48 4.100084 CCAGCGTGCTCCCATCCA 62.100 66.667 0.00 0.00 0.00 3.41
48 49 2.191375 CAGCGTGCTCCCATCCAT 59.809 61.111 0.00 0.00 0.00 3.41
49 50 2.184830 CAGCGTGCTCCCATCCATG 61.185 63.158 0.00 0.00 0.00 3.66
50 51 3.589881 GCGTGCTCCCATCCATGC 61.590 66.667 0.00 0.00 36.89 4.06
51 52 2.191375 CGTGCTCCCATCCATGCT 59.809 61.111 0.00 0.00 0.00 3.79
52 53 1.890979 CGTGCTCCCATCCATGCTC 60.891 63.158 0.00 0.00 0.00 4.26
53 54 1.527844 GTGCTCCCATCCATGCTCC 60.528 63.158 0.00 0.00 0.00 4.70
54 55 2.281345 GCTCCCATCCATGCTCCG 60.281 66.667 0.00 0.00 0.00 4.63
55 56 2.429058 CTCCCATCCATGCTCCGG 59.571 66.667 0.00 0.00 0.00 5.14
56 57 3.839353 CTCCCATCCATGCTCCGGC 62.839 68.421 0.00 0.00 39.26 6.13
65 66 4.855105 TGCTCCGGCATATGTGTC 57.145 55.556 4.29 0.00 44.28 3.67
66 67 1.904032 TGCTCCGGCATATGTGTCA 59.096 52.632 4.29 0.00 44.28 3.58
67 68 0.461870 TGCTCCGGCATATGTGTCAC 60.462 55.000 4.29 0.00 44.28 3.67
68 69 1.490693 GCTCCGGCATATGTGTCACG 61.491 60.000 4.29 2.30 38.54 4.35
69 70 0.102300 CTCCGGCATATGTGTCACGA 59.898 55.000 4.29 0.00 0.00 4.35
70 71 0.750249 TCCGGCATATGTGTCACGAT 59.250 50.000 4.29 0.00 0.00 3.73
71 72 1.138069 TCCGGCATATGTGTCACGATT 59.862 47.619 4.29 0.00 0.00 3.34
72 73 1.939934 CCGGCATATGTGTCACGATTT 59.060 47.619 4.29 0.00 0.00 2.17
73 74 2.286359 CCGGCATATGTGTCACGATTTG 60.286 50.000 4.29 1.10 0.00 2.32
74 75 2.607180 CGGCATATGTGTCACGATTTGA 59.393 45.455 4.29 0.00 0.00 2.69
75 76 3.248363 CGGCATATGTGTCACGATTTGAT 59.752 43.478 4.29 0.00 36.32 2.57
76 77 4.260743 CGGCATATGTGTCACGATTTGATT 60.261 41.667 4.29 0.00 36.32 2.57
77 78 4.971830 GGCATATGTGTCACGATTTGATTG 59.028 41.667 4.29 0.00 36.32 2.67
78 79 5.220835 GGCATATGTGTCACGATTTGATTGA 60.221 40.000 4.29 0.00 36.32 2.57
79 80 6.257423 GCATATGTGTCACGATTTGATTGAA 58.743 36.000 4.29 0.00 36.32 2.69
80 81 6.746822 GCATATGTGTCACGATTTGATTGAAA 59.253 34.615 4.29 0.00 36.32 2.69
81 82 7.253420 GCATATGTGTCACGATTTGATTGAAAC 60.253 37.037 4.29 0.00 36.32 2.78
82 83 5.491635 TGTGTCACGATTTGATTGAAACA 57.508 34.783 0.00 0.00 35.53 2.83
83 84 5.884771 TGTGTCACGATTTGATTGAAACAA 58.115 33.333 0.00 0.00 35.08 2.83
84 85 6.325596 TGTGTCACGATTTGATTGAAACAAA 58.674 32.000 3.11 3.11 35.08 2.83
85 86 6.808704 TGTGTCACGATTTGATTGAAACAAAA 59.191 30.769 4.74 0.00 39.95 2.44
86 87 7.490725 TGTGTCACGATTTGATTGAAACAAAAT 59.509 29.630 4.74 0.00 39.95 1.82
87 88 8.963130 GTGTCACGATTTGATTGAAACAAAATA 58.037 29.630 4.74 0.00 39.95 1.40
88 89 9.521503 TGTCACGATTTGATTGAAACAAAATAA 57.478 25.926 4.74 0.00 39.95 1.40
89 90 9.993881 GTCACGATTTGATTGAAACAAAATAAG 57.006 29.630 4.74 0.72 39.95 1.73
90 91 9.190858 TCACGATTTGATTGAAACAAAATAAGG 57.809 29.630 4.74 0.00 39.95 2.69
91 92 7.951565 CACGATTTGATTGAAACAAAATAAGGC 59.048 33.333 4.74 0.00 39.95 4.35
92 93 7.117667 ACGATTTGATTGAAACAAAATAAGGCC 59.882 33.333 4.74 0.00 39.95 5.19
93 94 7.412891 CGATTTGATTGAAACAAAATAAGGCCC 60.413 37.037 4.74 0.00 39.95 5.80
94 95 4.815269 TGATTGAAACAAAATAAGGCCCG 58.185 39.130 0.00 0.00 0.00 6.13
95 96 3.669251 TTGAAACAAAATAAGGCCCGG 57.331 42.857 0.00 0.00 0.00 5.73
96 97 1.273886 TGAAACAAAATAAGGCCCGGC 59.726 47.619 0.00 0.00 0.00 6.13
110 111 3.663806 CGGCCCCACCCCCTTAAA 61.664 66.667 0.00 0.00 33.26 1.52
111 112 2.863275 GGCCCCACCCCCTTAAAA 59.137 61.111 0.00 0.00 0.00 1.52
112 113 1.394557 GGCCCCACCCCCTTAAAAT 59.605 57.895 0.00 0.00 0.00 1.82
113 114 0.689745 GGCCCCACCCCCTTAAAATC 60.690 60.000 0.00 0.00 0.00 2.17
114 115 0.041982 GCCCCACCCCCTTAAAATCA 59.958 55.000 0.00 0.00 0.00 2.57
115 116 1.964830 GCCCCACCCCCTTAAAATCAG 60.965 57.143 0.00 0.00 0.00 2.90
116 117 1.643811 CCCCACCCCCTTAAAATCAGA 59.356 52.381 0.00 0.00 0.00 3.27
117 118 2.358195 CCCCACCCCCTTAAAATCAGAG 60.358 54.545 0.00 0.00 0.00 3.35
118 119 2.358195 CCCACCCCCTTAAAATCAGAGG 60.358 54.545 0.00 0.00 0.00 3.69
125 126 4.723309 CCCTTAAAATCAGAGGGGAGATG 58.277 47.826 0.00 0.00 45.27 2.90
126 127 4.413520 CCCTTAAAATCAGAGGGGAGATGA 59.586 45.833 0.00 0.00 45.27 2.92
127 128 5.074239 CCCTTAAAATCAGAGGGGAGATGAT 59.926 44.000 0.00 0.00 45.27 2.45
128 129 6.411320 CCCTTAAAATCAGAGGGGAGATGATT 60.411 42.308 0.00 0.00 45.27 2.57
129 130 7.202223 CCCTTAAAATCAGAGGGGAGATGATTA 60.202 40.741 0.00 0.00 45.27 1.75
130 131 8.220559 CCTTAAAATCAGAGGGGAGATGATTAA 58.779 37.037 0.49 0.00 41.56 1.40
131 132 9.632638 CTTAAAATCAGAGGGGAGATGATTAAA 57.367 33.333 0.49 0.00 41.56 1.52
138 139 9.989296 TCAGAGGGGAGATGATTAAATTAAAAA 57.011 29.630 0.00 0.00 0.00 1.94
179 180 3.669354 CGTAGGATGAAGTGGGAGC 57.331 57.895 0.00 0.00 0.00 4.70
180 181 0.824109 CGTAGGATGAAGTGGGAGCA 59.176 55.000 0.00 0.00 0.00 4.26
181 182 1.471676 CGTAGGATGAAGTGGGAGCAC 60.472 57.143 0.00 0.00 0.00 4.40
182 183 0.824109 TAGGATGAAGTGGGAGCACG 59.176 55.000 0.00 0.00 0.00 5.34
183 184 1.450312 GGATGAAGTGGGAGCACGG 60.450 63.158 0.00 0.00 0.00 4.94
184 185 1.596934 GATGAAGTGGGAGCACGGA 59.403 57.895 0.00 0.00 0.00 4.69
185 186 0.179000 GATGAAGTGGGAGCACGGAT 59.821 55.000 0.00 0.00 0.00 4.18
186 187 0.107508 ATGAAGTGGGAGCACGGATG 60.108 55.000 0.00 0.00 0.00 3.51
187 188 1.450312 GAAGTGGGAGCACGGATGG 60.450 63.158 0.00 0.00 0.00 3.51
188 189 2.876368 GAAGTGGGAGCACGGATGGG 62.876 65.000 0.00 0.00 0.00 4.00
189 190 3.399181 GTGGGAGCACGGATGGGA 61.399 66.667 0.00 0.00 0.00 4.37
190 191 3.083349 TGGGAGCACGGATGGGAG 61.083 66.667 0.00 0.00 0.00 4.30
191 192 4.554036 GGGAGCACGGATGGGAGC 62.554 72.222 0.00 0.00 0.00 4.70
192 193 3.785859 GGAGCACGGATGGGAGCA 61.786 66.667 0.00 0.00 0.00 4.26
193 194 2.507944 GAGCACGGATGGGAGCAT 59.492 61.111 0.00 0.00 0.00 3.79
194 195 1.890979 GAGCACGGATGGGAGCATG 60.891 63.158 0.00 0.00 0.00 4.06
195 196 2.903855 GCACGGATGGGAGCATGG 60.904 66.667 0.00 0.00 0.00 3.66
196 197 2.903855 CACGGATGGGAGCATGGC 60.904 66.667 0.00 0.00 0.00 4.40
197 198 4.552365 ACGGATGGGAGCATGGCG 62.552 66.667 0.00 0.00 0.00 5.69
198 199 4.240103 CGGATGGGAGCATGGCGA 62.240 66.667 0.00 0.00 0.00 5.54
199 200 2.281345 GGATGGGAGCATGGCGAG 60.281 66.667 0.00 0.00 0.00 5.03
200 201 2.281345 GATGGGAGCATGGCGAGG 60.281 66.667 0.00 0.00 0.00 4.63
201 202 3.839353 GATGGGAGCATGGCGAGGG 62.839 68.421 0.00 0.00 0.00 4.30
203 204 4.247380 GGGAGCATGGCGAGGGAG 62.247 72.222 0.00 0.00 0.00 4.30
204 205 4.925861 GGAGCATGGCGAGGGAGC 62.926 72.222 0.00 0.00 0.00 4.70
205 206 4.166888 GAGCATGGCGAGGGAGCA 62.167 66.667 0.00 0.00 39.27 4.26
206 207 4.172512 AGCATGGCGAGGGAGCAG 62.173 66.667 0.00 0.00 39.27 4.24
217 218 4.496336 GGAGCAGGCAAGCCGGAT 62.496 66.667 15.46 8.74 41.95 4.18
218 219 2.899339 GAGCAGGCAAGCCGGATC 60.899 66.667 15.46 14.32 39.23 3.36
219 220 4.496336 AGCAGGCAAGCCGGATCC 62.496 66.667 15.46 0.00 41.95 3.36
225 226 2.499205 CAAGCCGGATCCGCTGTA 59.501 61.111 29.12 0.00 38.24 2.74
226 227 1.883084 CAAGCCGGATCCGCTGTAC 60.883 63.158 29.12 14.04 38.24 2.90
227 228 2.058595 AAGCCGGATCCGCTGTACT 61.059 57.895 29.12 16.01 38.24 2.73
228 229 0.754217 AAGCCGGATCCGCTGTACTA 60.754 55.000 29.12 0.00 38.24 1.82
229 230 1.007618 GCCGGATCCGCTGTACTAC 60.008 63.158 29.12 5.84 38.24 2.73
230 231 1.453762 GCCGGATCCGCTGTACTACT 61.454 60.000 29.12 0.00 38.24 2.57
231 232 0.592148 CCGGATCCGCTGTACTACTC 59.408 60.000 29.12 0.00 38.24 2.59
232 233 0.592148 CGGATCCGCTGTACTACTCC 59.408 60.000 23.37 0.00 0.00 3.85
233 234 0.960286 GGATCCGCTGTACTACTCCC 59.040 60.000 0.00 0.00 0.00 4.30
234 235 1.479021 GGATCCGCTGTACTACTCCCT 60.479 57.143 0.00 0.00 0.00 4.20
235 236 1.609555 GATCCGCTGTACTACTCCCTG 59.390 57.143 0.00 0.00 0.00 4.45
236 237 0.622136 TCCGCTGTACTACTCCCTGA 59.378 55.000 0.00 0.00 0.00 3.86
237 238 1.214673 TCCGCTGTACTACTCCCTGAT 59.785 52.381 0.00 0.00 0.00 2.90
238 239 1.338337 CCGCTGTACTACTCCCTGATG 59.662 57.143 0.00 0.00 0.00 3.07
239 240 1.269309 CGCTGTACTACTCCCTGATGC 60.269 57.143 0.00 0.00 0.00 3.91
240 241 1.757118 GCTGTACTACTCCCTGATGCA 59.243 52.381 0.00 0.00 0.00 3.96
241 242 2.482142 GCTGTACTACTCCCTGATGCAC 60.482 54.545 0.00 0.00 0.00 4.57
242 243 2.101582 CTGTACTACTCCCTGATGCACC 59.898 54.545 0.00 0.00 0.00 5.01
260 262 8.892723 TGATGCACCATAAAGAAGTAAATACAG 58.107 33.333 0.00 0.00 0.00 2.74
284 286 1.754226 TGCCCTTTTGGTCAGACAAAC 59.246 47.619 2.17 0.00 39.82 2.93
301 303 1.792006 AACGACACCTCGAATGAACC 58.208 50.000 3.45 0.00 43.06 3.62
370 373 6.091076 AGAAAAATGATCACAGGGGGATAA 57.909 37.500 0.00 0.00 0.00 1.75
377 382 4.975147 TGATCACAGGGGGATAATGTAAGT 59.025 41.667 0.00 0.00 0.00 2.24
403 408 3.893200 ACCTTCATATTCGTCCGGTCATA 59.107 43.478 0.00 0.00 0.00 2.15
412 417 2.159476 TCGTCCGGTCATAGAAGTTTCG 60.159 50.000 0.00 0.00 0.00 3.46
495 500 1.186917 CCAATGAGGCAAGCCCAACA 61.187 55.000 7.62 6.58 36.58 3.33
552 557 0.865769 GAGTTGGTTGGTACGCACAG 59.134 55.000 0.00 0.00 0.00 3.66
658 664 3.754965 TCCCAGAAGAAACATCAACCAG 58.245 45.455 0.00 0.00 0.00 4.00
664 670 2.893424 AGAAACATCAACCAGGCCATT 58.107 42.857 5.01 0.00 0.00 3.16
740 746 4.465446 AGCCGCCTCCTAGCCTCA 62.465 66.667 0.00 0.00 0.00 3.86
908 919 1.066430 CCTCCGGCTTGCAAGTAAGTA 60.066 52.381 26.55 9.00 0.00 2.24
940 1189 0.968901 CCGCTCCTGGTACACTGGTA 60.969 60.000 0.00 0.00 39.12 3.25
961 1210 3.371965 ACACTTCTAGGAGCGGGAATTA 58.628 45.455 0.00 0.00 0.00 1.40
1095 1344 1.959226 GCGCAAACGGAAGACCTCA 60.959 57.895 0.30 0.00 40.57 3.86
1107 1356 0.832135 AGACCTCAAACCGCCTCTCA 60.832 55.000 0.00 0.00 0.00 3.27
1154 1403 2.125512 GCGCGAGGACAATCTGGT 60.126 61.111 12.10 0.00 0.00 4.00
1157 1406 1.215647 GCGAGGACAATCTGGTCGT 59.784 57.895 0.00 0.00 38.70 4.34
1186 1435 0.171231 CCAGCTCGAGATCGACAACA 59.829 55.000 18.75 0.00 44.22 3.33
1188 1437 1.651138 CAGCTCGAGATCGACAACAAC 59.349 52.381 18.75 0.00 44.22 3.32
1208 1457 4.088762 CATGCGTGTCACCACCGC 62.089 66.667 0.00 0.00 38.41 5.68
1315 1564 1.600636 CAAAACTCCCAGCTCCGCA 60.601 57.895 0.00 0.00 0.00 5.69
1374 1623 2.180159 AAATCCCCGTCCACCTCACG 62.180 60.000 0.00 0.00 36.99 4.35
1529 1781 5.047590 TCGGGAGCGTATTATCATATTGTGT 60.048 40.000 0.00 0.00 0.00 3.72
1530 1782 5.062183 CGGGAGCGTATTATCATATTGTGTG 59.938 44.000 0.00 0.00 0.00 3.82
1531 1783 5.932303 GGGAGCGTATTATCATATTGTGTGT 59.068 40.000 0.00 0.00 0.00 3.72
1532 1784 7.094631 GGGAGCGTATTATCATATTGTGTGTA 58.905 38.462 0.00 0.00 0.00 2.90
1533 1785 7.063074 GGGAGCGTATTATCATATTGTGTGTAC 59.937 40.741 0.00 0.00 0.00 2.90
1571 1826 3.056821 TGTGGTGCTAGTAGTGTGATGAC 60.057 47.826 0.00 0.00 0.00 3.06
1590 1845 0.179121 CGTGAGCTATGGCGTTGGTA 60.179 55.000 0.00 0.00 44.37 3.25
1606 1861 3.483808 TGGTATGACTGTTGACTTGCA 57.516 42.857 0.00 0.00 0.00 4.08
1658 1913 5.038683 TCTTGTGTGAACTTGTACGTGTAG 58.961 41.667 0.00 0.00 0.00 2.74
1659 1914 4.374843 TGTGTGAACTTGTACGTGTAGT 57.625 40.909 0.00 0.00 0.00 2.73
1660 1915 5.497635 TGTGTGAACTTGTACGTGTAGTA 57.502 39.130 0.00 0.00 0.00 1.82
1740 1995 3.650070 TTGTGAAGTTGTGTTGTTGCA 57.350 38.095 0.00 0.00 0.00 4.08
1817 2072 5.759059 TGGAAAGCCAGTGAGATATCATTT 58.241 37.500 5.32 0.00 39.92 2.32
1818 2073 5.824624 TGGAAAGCCAGTGAGATATCATTTC 59.175 40.000 5.32 0.00 39.92 2.17
1819 2074 6.060788 GGAAAGCCAGTGAGATATCATTTCT 58.939 40.000 5.32 0.00 0.00 2.52
1820 2075 6.545298 GGAAAGCCAGTGAGATATCATTTCTT 59.455 38.462 5.32 3.48 0.00 2.52
1821 2076 7.716998 GGAAAGCCAGTGAGATATCATTTCTTA 59.283 37.037 5.32 0.00 0.00 2.10
1822 2077 9.113838 GAAAGCCAGTGAGATATCATTTCTTAA 57.886 33.333 5.32 0.00 0.00 1.85
1823 2078 9.638176 AAAGCCAGTGAGATATCATTTCTTAAT 57.362 29.630 5.32 0.00 0.00 1.40
1824 2079 8.845413 AGCCAGTGAGATATCATTTCTTAATC 57.155 34.615 5.32 0.00 0.00 1.75
1825 2080 7.601886 AGCCAGTGAGATATCATTTCTTAATCG 59.398 37.037 5.32 0.00 0.00 3.34
1826 2081 7.623089 GCCAGTGAGATATCATTTCTTAATCGC 60.623 40.741 5.32 0.00 0.00 4.58
1827 2082 7.148507 CCAGTGAGATATCATTTCTTAATCGCC 60.149 40.741 5.32 0.00 0.00 5.54
1828 2083 7.601886 CAGTGAGATATCATTTCTTAATCGCCT 59.398 37.037 5.32 0.00 0.00 5.52
1829 2084 8.153550 AGTGAGATATCATTTCTTAATCGCCTT 58.846 33.333 5.32 0.00 0.00 4.35
1830 2085 8.778358 GTGAGATATCATTTCTTAATCGCCTTT 58.222 33.333 5.32 0.00 0.00 3.11
1831 2086 9.342308 TGAGATATCATTTCTTAATCGCCTTTT 57.658 29.630 5.32 0.00 0.00 2.27
1854 2109 6.785488 TTTTAGCATCAGTACAGACACAAG 57.215 37.500 0.00 0.00 0.00 3.16
1855 2110 2.693069 AGCATCAGTACAGACACAAGC 58.307 47.619 0.00 0.00 0.00 4.01
1856 2111 1.391485 GCATCAGTACAGACACAAGCG 59.609 52.381 0.00 0.00 0.00 4.68
1857 2112 1.391485 CATCAGTACAGACACAAGCGC 59.609 52.381 0.00 0.00 0.00 5.92
1858 2113 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
1859 2114 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
1860 2115 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
1861 2116 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
1862 2117 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
1863 2118 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
1864 2119 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
1865 2120 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
1866 2121 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
1867 2122 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
1868 2123 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
1872 2127 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
1873 2128 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
1874 2129 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
1875 2130 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
1876 2131 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
1877 2132 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
1878 2133 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
1879 2134 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
1880 2135 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
1881 2136 1.556564 ATACACGCGCATACACTCAC 58.443 50.000 5.73 0.00 0.00 3.51
1882 2137 0.457166 TACACGCGCATACACTCACC 60.457 55.000 5.73 0.00 0.00 4.02
1883 2138 2.125673 ACGCGCATACACTCACCC 60.126 61.111 5.73 0.00 0.00 4.61
1884 2139 2.890474 CGCGCATACACTCACCCC 60.890 66.667 8.75 0.00 0.00 4.95
1885 2140 2.584608 GCGCATACACTCACCCCT 59.415 61.111 0.30 0.00 0.00 4.79
1886 2141 1.820581 GCGCATACACTCACCCCTA 59.179 57.895 0.30 0.00 0.00 3.53
1887 2142 0.393077 GCGCATACACTCACCCCTAT 59.607 55.000 0.30 0.00 0.00 2.57
1888 2143 1.873903 GCGCATACACTCACCCCTATG 60.874 57.143 0.30 0.00 0.00 2.23
1889 2144 1.686587 CGCATACACTCACCCCTATGA 59.313 52.381 0.00 0.00 0.00 2.15
1890 2145 2.102420 CGCATACACTCACCCCTATGAA 59.898 50.000 0.00 0.00 0.00 2.57
1891 2146 3.467803 GCATACACTCACCCCTATGAAC 58.532 50.000 0.00 0.00 0.00 3.18
1892 2147 3.717707 CATACACTCACCCCTATGAACG 58.282 50.000 0.00 0.00 0.00 3.95
1893 2148 0.249398 ACACTCACCCCTATGAACGC 59.751 55.000 0.00 0.00 0.00 4.84
1894 2149 0.249120 CACTCACCCCTATGAACGCA 59.751 55.000 0.00 0.00 0.00 5.24
1895 2150 0.249398 ACTCACCCCTATGAACGCAC 59.751 55.000 0.00 0.00 0.00 5.34
1896 2151 0.249120 CTCACCCCTATGAACGCACA 59.751 55.000 0.00 0.00 0.00 4.57
1897 2152 0.036765 TCACCCCTATGAACGCACAC 60.037 55.000 0.00 0.00 0.00 3.82
1898 2153 0.321210 CACCCCTATGAACGCACACA 60.321 55.000 0.00 0.00 0.00 3.72
1899 2154 0.321298 ACCCCTATGAACGCACACAC 60.321 55.000 0.00 0.00 0.00 3.82
1900 2155 1.358725 CCCCTATGAACGCACACACG 61.359 60.000 0.00 0.00 39.50 4.49
1901 2156 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
1902 2157 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
1903 2158 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
1904 2159 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
1905 2160 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
1906 2161 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
1909 2164 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
1910 2165 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
1911 2166 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
1912 2167 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
1913 2168 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
1914 2169 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
1915 2170 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
1916 2171 0.104304 CACGCACACCCTATCCCTAC 59.896 60.000 0.00 0.00 0.00 3.18
1917 2172 1.362717 CGCACACCCTATCCCTACG 59.637 63.158 0.00 0.00 0.00 3.51
1918 2173 1.105167 CGCACACCCTATCCCTACGA 61.105 60.000 0.00 0.00 0.00 3.43
1919 2174 0.674534 GCACACCCTATCCCTACGAG 59.325 60.000 0.00 0.00 0.00 4.18
1920 2175 0.674534 CACACCCTATCCCTACGAGC 59.325 60.000 0.00 0.00 0.00 5.03
1921 2176 0.260816 ACACCCTATCCCTACGAGCA 59.739 55.000 0.00 0.00 0.00 4.26
1922 2177 0.674534 CACCCTATCCCTACGAGCAC 59.325 60.000 0.00 0.00 0.00 4.40
1923 2178 0.556747 ACCCTATCCCTACGAGCACT 59.443 55.000 0.00 0.00 0.00 4.40
1924 2179 1.063114 ACCCTATCCCTACGAGCACTT 60.063 52.381 0.00 0.00 0.00 3.16
1925 2180 1.614413 CCCTATCCCTACGAGCACTTC 59.386 57.143 0.00 0.00 0.00 3.01
1926 2181 1.614413 CCTATCCCTACGAGCACTTCC 59.386 57.143 0.00 0.00 0.00 3.46
1927 2182 1.267261 CTATCCCTACGAGCACTTCCG 59.733 57.143 0.00 0.00 0.00 4.30
1928 2183 0.395311 ATCCCTACGAGCACTTCCGA 60.395 55.000 0.00 0.00 0.00 4.55
1929 2184 0.609957 TCCCTACGAGCACTTCCGAA 60.610 55.000 0.00 0.00 0.00 4.30
1930 2185 0.245539 CCCTACGAGCACTTCCGAAA 59.754 55.000 0.00 0.00 0.00 3.46
1931 2186 1.630148 CCTACGAGCACTTCCGAAAG 58.370 55.000 0.00 0.00 38.54 2.62
1932 2187 1.201647 CCTACGAGCACTTCCGAAAGA 59.798 52.381 0.00 0.00 36.30 2.52
1933 2188 2.251893 CTACGAGCACTTCCGAAAGAC 58.748 52.381 0.00 0.00 36.30 3.01
1934 2189 0.674534 ACGAGCACTTCCGAAAGACT 59.325 50.000 0.00 0.00 36.30 3.24
1935 2190 1.063806 CGAGCACTTCCGAAAGACTG 58.936 55.000 0.00 0.00 36.30 3.51
1936 2191 1.335964 CGAGCACTTCCGAAAGACTGA 60.336 52.381 0.00 0.00 36.30 3.41
1937 2192 2.333014 GAGCACTTCCGAAAGACTGAG 58.667 52.381 0.00 0.00 36.30 3.35
1938 2193 0.793250 GCACTTCCGAAAGACTGAGC 59.207 55.000 0.00 0.00 36.30 4.26
1939 2194 1.433534 CACTTCCGAAAGACTGAGCC 58.566 55.000 0.00 0.00 36.30 4.70
1940 2195 0.038159 ACTTCCGAAAGACTGAGCCG 60.038 55.000 0.00 0.00 36.30 5.52
1941 2196 0.737715 CTTCCGAAAGACTGAGCCGG 60.738 60.000 0.00 0.00 41.36 6.13
1942 2197 2.781595 TTCCGAAAGACTGAGCCGGC 62.782 60.000 21.89 21.89 39.96 6.13
1943 2198 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
1944 2199 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
1945 2200 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
1946 2201 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
1947 2202 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
1948 2203 0.394565 AAGACTGAGCCGGCATATCC 59.605 55.000 31.54 14.55 0.00 2.59
1949 2204 1.004440 GACTGAGCCGGCATATCCC 60.004 63.158 31.54 9.17 0.00 3.85
1950 2205 2.348998 CTGAGCCGGCATATCCCC 59.651 66.667 31.54 8.61 0.00 4.81
1951 2206 2.447572 TGAGCCGGCATATCCCCA 60.448 61.111 31.54 11.20 0.00 4.96
1952 2207 2.055689 CTGAGCCGGCATATCCCCAA 62.056 60.000 31.54 0.16 0.00 4.12
1953 2208 1.600916 GAGCCGGCATATCCCCAAC 60.601 63.158 31.54 2.51 0.00 3.77
1954 2209 2.597510 GCCGGCATATCCCCAACC 60.598 66.667 24.80 0.00 0.00 3.77
1955 2210 2.115266 CCGGCATATCCCCAACCC 59.885 66.667 0.00 0.00 0.00 4.11
1956 2211 2.762554 CCGGCATATCCCCAACCCA 61.763 63.158 0.00 0.00 0.00 4.51
1957 2212 1.528309 CGGCATATCCCCAACCCAC 60.528 63.158 0.00 0.00 0.00 4.61
1958 2213 1.930520 GGCATATCCCCAACCCACT 59.069 57.895 0.00 0.00 0.00 4.00
1959 2214 0.178990 GGCATATCCCCAACCCACTC 60.179 60.000 0.00 0.00 0.00 3.51
1960 2215 0.550914 GCATATCCCCAACCCACTCA 59.449 55.000 0.00 0.00 0.00 3.41
1961 2216 1.064017 GCATATCCCCAACCCACTCAA 60.064 52.381 0.00 0.00 0.00 3.02
1962 2217 2.654863 CATATCCCCAACCCACTCAAC 58.345 52.381 0.00 0.00 0.00 3.18
1963 2218 0.996583 TATCCCCAACCCACTCAACC 59.003 55.000 0.00 0.00 0.00 3.77
1964 2219 1.071314 ATCCCCAACCCACTCAACCA 61.071 55.000 0.00 0.00 0.00 3.67
1965 2220 1.530655 CCCCAACCCACTCAACCAC 60.531 63.158 0.00 0.00 0.00 4.16
1966 2221 1.228793 CCCAACCCACTCAACCACA 59.771 57.895 0.00 0.00 0.00 4.17
1967 2222 0.823356 CCCAACCCACTCAACCACAG 60.823 60.000 0.00 0.00 0.00 3.66
1968 2223 0.823356 CCAACCCACTCAACCACAGG 60.823 60.000 0.00 0.00 0.00 4.00
1969 2224 0.106719 CAACCCACTCAACCACAGGT 60.107 55.000 0.00 0.00 37.65 4.00
1995 2250 6.599244 TGATTCACATTTCTTAATCGCCTTCT 59.401 34.615 0.00 0.00 32.23 2.85
2034 2302 8.958506 TCTTCAGTAGTTAGTACTTGGATCTTC 58.041 37.037 0.00 0.00 40.27 2.87
2094 2362 5.059833 AGATCAACTGACACTCCTTTTGAC 58.940 41.667 0.00 0.00 0.00 3.18
2097 2365 5.192927 TCAACTGACACTCCTTTTGACAAT 58.807 37.500 0.00 0.00 0.00 2.71
2098 2366 6.353323 TCAACTGACACTCCTTTTGACAATA 58.647 36.000 0.00 0.00 0.00 1.90
2099 2367 6.826231 TCAACTGACACTCCTTTTGACAATAA 59.174 34.615 0.00 0.00 0.00 1.40
2100 2368 7.502226 TCAACTGACACTCCTTTTGACAATAAT 59.498 33.333 0.00 0.00 0.00 1.28
2101 2369 7.823745 ACTGACACTCCTTTTGACAATAATT 57.176 32.000 0.00 0.00 0.00 1.40
2102 2370 8.237811 ACTGACACTCCTTTTGACAATAATTT 57.762 30.769 0.00 0.00 0.00 1.82
2103 2371 8.695456 ACTGACACTCCTTTTGACAATAATTTT 58.305 29.630 0.00 0.00 0.00 1.82
2104 2372 9.533253 CTGACACTCCTTTTGACAATAATTTTT 57.467 29.630 0.00 0.00 0.00 1.94
2144 2421 5.296151 ACACTCCTCTTTGTTCAGATTCA 57.704 39.130 0.00 0.00 0.00 2.57
2167 2444 4.081752 ACAAACACCACTGCATTCTCAAAA 60.082 37.500 0.00 0.00 0.00 2.44
2168 2445 4.734398 AACACCACTGCATTCTCAAAAA 57.266 36.364 0.00 0.00 0.00 1.94
2169 2446 4.942761 ACACCACTGCATTCTCAAAAAT 57.057 36.364 0.00 0.00 0.00 1.82
2170 2447 6.403866 AACACCACTGCATTCTCAAAAATA 57.596 33.333 0.00 0.00 0.00 1.40
2171 2448 5.772521 ACACCACTGCATTCTCAAAAATAC 58.227 37.500 0.00 0.00 0.00 1.89
2172 2449 5.163513 CACCACTGCATTCTCAAAAATACC 58.836 41.667 0.00 0.00 0.00 2.73
2173 2450 4.082787 ACCACTGCATTCTCAAAAATACCG 60.083 41.667 0.00 0.00 0.00 4.02
2174 2451 4.155826 CCACTGCATTCTCAAAAATACCGA 59.844 41.667 0.00 0.00 0.00 4.69
2175 2452 5.163622 CCACTGCATTCTCAAAAATACCGAT 60.164 40.000 0.00 0.00 0.00 4.18
2176 2453 6.324819 CACTGCATTCTCAAAAATACCGATT 58.675 36.000 0.00 0.00 0.00 3.34
2178 2455 6.071952 ACTGCATTCTCAAAAATACCGATTGT 60.072 34.615 0.00 0.00 0.00 2.71
2179 2456 6.686630 TGCATTCTCAAAAATACCGATTGTT 58.313 32.000 0.00 0.00 0.00 2.83
2180 2457 7.151308 TGCATTCTCAAAAATACCGATTGTTT 58.849 30.769 0.00 0.00 0.00 2.83
2207 2510 4.263443 GCACACAAACGAACAAATTAACGT 59.737 37.500 0.00 0.00 40.64 3.99
2286 2589 1.346538 GCTGATCGCGAAGTGCTTC 59.653 57.895 15.24 5.38 43.27 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.243336 GCAAGTCTTGTCCGTAGTACAG 58.757 50.000 14.03 0.00 0.00 2.74
1 2 2.029649 GGCAAGTCTTGTCCGTAGTACA 60.030 50.000 14.03 0.00 0.00 2.90
2 3 2.230750 AGGCAAGTCTTGTCCGTAGTAC 59.769 50.000 13.59 0.00 35.39 2.73
3 4 2.230508 CAGGCAAGTCTTGTCCGTAGTA 59.769 50.000 13.59 0.00 35.39 1.82
4 5 1.000955 CAGGCAAGTCTTGTCCGTAGT 59.999 52.381 13.59 0.00 35.39 2.73
5 6 1.714794 CAGGCAAGTCTTGTCCGTAG 58.285 55.000 13.59 7.42 35.39 3.51
6 7 0.320421 GCAGGCAAGTCTTGTCCGTA 60.320 55.000 13.59 0.00 35.39 4.02
7 8 1.598130 GCAGGCAAGTCTTGTCCGT 60.598 57.895 13.59 0.00 35.39 4.69
8 9 1.294659 GAGCAGGCAAGTCTTGTCCG 61.295 60.000 13.59 4.75 35.39 4.79
9 10 0.957888 GGAGCAGGCAAGTCTTGTCC 60.958 60.000 13.59 14.22 35.39 4.02
10 11 0.957888 GGGAGCAGGCAAGTCTTGTC 60.958 60.000 9.25 9.25 34.90 3.18
11 12 1.073897 GGGAGCAGGCAAGTCTTGT 59.926 57.895 14.03 0.00 0.00 3.16
12 13 1.676967 GGGGAGCAGGCAAGTCTTG 60.677 63.158 8.31 8.31 0.00 3.02
13 14 2.759795 GGGGAGCAGGCAAGTCTT 59.240 61.111 0.00 0.00 0.00 3.01
14 15 3.334054 GGGGGAGCAGGCAAGTCT 61.334 66.667 0.00 0.00 0.00 3.24
15 16 3.635268 CTGGGGGAGCAGGCAAGTC 62.635 68.421 0.00 0.00 0.00 3.01
16 17 3.655211 CTGGGGGAGCAGGCAAGT 61.655 66.667 0.00 0.00 0.00 3.16
28 29 4.864334 GATGGGAGCACGCTGGGG 62.864 72.222 0.00 0.00 0.00 4.96
29 30 4.864334 GGATGGGAGCACGCTGGG 62.864 72.222 0.00 0.00 0.00 4.45
30 31 3.411114 ATGGATGGGAGCACGCTGG 62.411 63.158 0.00 0.00 0.00 4.85
31 32 2.184830 CATGGATGGGAGCACGCTG 61.185 63.158 0.00 0.00 0.00 5.18
32 33 2.191375 CATGGATGGGAGCACGCT 59.809 61.111 0.00 0.00 0.00 5.07
33 34 3.589881 GCATGGATGGGAGCACGC 61.590 66.667 0.00 0.00 0.00 5.34
34 35 1.890979 GAGCATGGATGGGAGCACG 60.891 63.158 0.00 0.00 0.00 5.34
35 36 1.527844 GGAGCATGGATGGGAGCAC 60.528 63.158 0.00 0.00 0.00 4.40
36 37 2.921435 GGAGCATGGATGGGAGCA 59.079 61.111 0.00 0.00 0.00 4.26
37 38 2.281345 CGGAGCATGGATGGGAGC 60.281 66.667 0.00 0.00 0.00 4.70
38 39 2.429058 CCGGAGCATGGATGGGAG 59.571 66.667 0.00 0.00 0.00 4.30
39 40 3.877450 GCCGGAGCATGGATGGGA 61.877 66.667 5.05 0.00 39.53 4.37
40 41 4.193893 TGCCGGAGCATGGATGGG 62.194 66.667 5.05 0.00 46.52 4.00
49 50 1.490693 CGTGACACATATGCCGGAGC 61.491 60.000 5.05 0.00 40.48 4.70
50 51 0.102300 TCGTGACACATATGCCGGAG 59.898 55.000 5.05 0.00 0.00 4.63
51 52 0.750249 ATCGTGACACATATGCCGGA 59.250 50.000 5.05 0.00 0.00 5.14
52 53 1.581934 AATCGTGACACATATGCCGG 58.418 50.000 6.37 0.00 0.00 6.13
53 54 2.607180 TCAAATCGTGACACATATGCCG 59.393 45.455 6.37 0.00 0.00 5.69
54 55 4.818534 ATCAAATCGTGACACATATGCC 57.181 40.909 6.37 0.00 39.72 4.40
55 56 5.809464 TCAATCAAATCGTGACACATATGC 58.191 37.500 6.37 0.00 39.72 3.14
56 57 7.750014 TGTTTCAATCAAATCGTGACACATATG 59.250 33.333 6.37 0.00 39.72 1.78
57 58 7.815641 TGTTTCAATCAAATCGTGACACATAT 58.184 30.769 6.37 0.00 39.72 1.78
58 59 7.195839 TGTTTCAATCAAATCGTGACACATA 57.804 32.000 6.37 0.00 39.72 2.29
59 60 6.070897 TGTTTCAATCAAATCGTGACACAT 57.929 33.333 6.37 0.00 39.72 3.21
60 61 5.491635 TGTTTCAATCAAATCGTGACACA 57.508 34.783 6.37 0.00 39.72 3.72
61 62 6.804534 TTTGTTTCAATCAAATCGTGACAC 57.195 33.333 0.00 0.00 39.72 3.67
62 63 9.521503 TTATTTTGTTTCAATCAAATCGTGACA 57.478 25.926 0.00 0.00 39.72 3.58
63 64 9.993881 CTTATTTTGTTTCAATCAAATCGTGAC 57.006 29.630 0.00 0.00 39.72 3.67
64 65 9.190858 CCTTATTTTGTTTCAATCAAATCGTGA 57.809 29.630 0.00 0.00 41.67 4.35
65 66 7.951565 GCCTTATTTTGTTTCAATCAAATCGTG 59.048 33.333 0.00 0.00 35.25 4.35
66 67 7.117667 GGCCTTATTTTGTTTCAATCAAATCGT 59.882 33.333 0.00 0.00 35.25 3.73
67 68 7.412891 GGGCCTTATTTTGTTTCAATCAAATCG 60.413 37.037 0.84 0.00 35.25 3.34
68 69 7.412891 CGGGCCTTATTTTGTTTCAATCAAATC 60.413 37.037 0.84 0.00 35.25 2.17
69 70 6.371271 CGGGCCTTATTTTGTTTCAATCAAAT 59.629 34.615 0.84 0.00 35.25 2.32
70 71 5.698545 CGGGCCTTATTTTGTTTCAATCAAA 59.301 36.000 0.84 0.00 33.76 2.69
71 72 5.233988 CGGGCCTTATTTTGTTTCAATCAA 58.766 37.500 0.84 0.00 0.00 2.57
72 73 4.322349 CCGGGCCTTATTTTGTTTCAATCA 60.322 41.667 0.84 0.00 0.00 2.57
73 74 4.180817 CCGGGCCTTATTTTGTTTCAATC 58.819 43.478 0.84 0.00 0.00 2.67
74 75 3.618752 GCCGGGCCTTATTTTGTTTCAAT 60.619 43.478 8.12 0.00 0.00 2.57
75 76 2.289133 GCCGGGCCTTATTTTGTTTCAA 60.289 45.455 8.12 0.00 0.00 2.69
76 77 1.273886 GCCGGGCCTTATTTTGTTTCA 59.726 47.619 8.12 0.00 0.00 2.69
77 78 1.404986 GGCCGGGCCTTATTTTGTTTC 60.405 52.381 30.86 0.00 46.69 2.78
78 79 0.611200 GGCCGGGCCTTATTTTGTTT 59.389 50.000 30.86 0.00 46.69 2.83
79 80 2.282827 GGCCGGGCCTTATTTTGTT 58.717 52.632 30.86 0.00 46.69 2.83
80 81 4.027884 GGCCGGGCCTTATTTTGT 57.972 55.556 30.86 0.00 46.69 2.83
93 94 2.523740 ATTTTAAGGGGGTGGGGCCG 62.524 60.000 0.00 0.00 38.44 6.13
94 95 0.689745 GATTTTAAGGGGGTGGGGCC 60.690 60.000 0.00 0.00 0.00 5.80
95 96 0.041982 TGATTTTAAGGGGGTGGGGC 59.958 55.000 0.00 0.00 0.00 5.80
96 97 1.643811 TCTGATTTTAAGGGGGTGGGG 59.356 52.381 0.00 0.00 0.00 4.96
97 98 2.358195 CCTCTGATTTTAAGGGGGTGGG 60.358 54.545 0.00 0.00 30.92 4.61
98 99 3.018423 CCTCTGATTTTAAGGGGGTGG 57.982 52.381 0.00 0.00 30.92 4.61
104 105 5.636903 TCATCTCCCCTCTGATTTTAAGG 57.363 43.478 0.00 0.00 0.00 2.69
105 106 9.632638 TTTAATCATCTCCCCTCTGATTTTAAG 57.367 33.333 2.71 0.00 39.60 1.85
112 113 9.989296 TTTTTAATTTAATCATCTCCCCTCTGA 57.011 29.630 0.00 0.00 0.00 3.27
150 151 3.695830 TCATCCTACGGCTGTCTTTTT 57.304 42.857 0.00 0.00 0.00 1.94
151 152 3.008049 ACTTCATCCTACGGCTGTCTTTT 59.992 43.478 0.00 0.00 0.00 2.27
152 153 2.567615 ACTTCATCCTACGGCTGTCTTT 59.432 45.455 0.00 0.00 0.00 2.52
153 154 2.093973 CACTTCATCCTACGGCTGTCTT 60.094 50.000 0.00 0.00 0.00 3.01
154 155 1.478510 CACTTCATCCTACGGCTGTCT 59.521 52.381 0.00 0.00 0.00 3.41
155 156 1.471676 CCACTTCATCCTACGGCTGTC 60.472 57.143 0.00 0.00 0.00 3.51
156 157 0.537188 CCACTTCATCCTACGGCTGT 59.463 55.000 2.42 2.42 0.00 4.40
157 158 0.179073 CCCACTTCATCCTACGGCTG 60.179 60.000 0.00 0.00 0.00 4.85
158 159 0.325296 TCCCACTTCATCCTACGGCT 60.325 55.000 0.00 0.00 0.00 5.52
159 160 0.105039 CTCCCACTTCATCCTACGGC 59.895 60.000 0.00 0.00 0.00 5.68
160 161 0.105039 GCTCCCACTTCATCCTACGG 59.895 60.000 0.00 0.00 0.00 4.02
161 162 0.824109 TGCTCCCACTTCATCCTACG 59.176 55.000 0.00 0.00 0.00 3.51
162 163 1.471676 CGTGCTCCCACTTCATCCTAC 60.472 57.143 0.00 0.00 39.86 3.18
163 164 0.824109 CGTGCTCCCACTTCATCCTA 59.176 55.000 0.00 0.00 39.86 2.94
164 165 1.599047 CGTGCTCCCACTTCATCCT 59.401 57.895 0.00 0.00 39.86 3.24
165 166 1.450312 CCGTGCTCCCACTTCATCC 60.450 63.158 0.00 0.00 39.86 3.51
166 167 0.179000 ATCCGTGCTCCCACTTCATC 59.821 55.000 0.00 0.00 39.86 2.92
167 168 0.107508 CATCCGTGCTCCCACTTCAT 60.108 55.000 0.00 0.00 39.86 2.57
168 169 1.296392 CATCCGTGCTCCCACTTCA 59.704 57.895 0.00 0.00 39.86 3.02
169 170 1.450312 CCATCCGTGCTCCCACTTC 60.450 63.158 0.00 0.00 39.86 3.01
170 171 2.671070 CCATCCGTGCTCCCACTT 59.329 61.111 0.00 0.00 39.86 3.16
171 172 3.402681 CCCATCCGTGCTCCCACT 61.403 66.667 0.00 0.00 39.86 4.00
172 173 3.391665 CTCCCATCCGTGCTCCCAC 62.392 68.421 0.00 0.00 38.62 4.61
173 174 3.083349 CTCCCATCCGTGCTCCCA 61.083 66.667 0.00 0.00 0.00 4.37
174 175 4.554036 GCTCCCATCCGTGCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
175 176 3.112205 ATGCTCCCATCCGTGCTCC 62.112 63.158 0.00 0.00 0.00 4.70
176 177 1.890979 CATGCTCCCATCCGTGCTC 60.891 63.158 0.00 0.00 0.00 4.26
177 178 2.191375 CATGCTCCCATCCGTGCT 59.809 61.111 0.00 0.00 0.00 4.40
178 179 2.903855 CCATGCTCCCATCCGTGC 60.904 66.667 0.00 0.00 0.00 5.34
179 180 2.903855 GCCATGCTCCCATCCGTG 60.904 66.667 0.00 0.00 0.00 4.94
180 181 4.552365 CGCCATGCTCCCATCCGT 62.552 66.667 0.00 0.00 0.00 4.69
181 182 4.240103 TCGCCATGCTCCCATCCG 62.240 66.667 0.00 0.00 0.00 4.18
182 183 2.281345 CTCGCCATGCTCCCATCC 60.281 66.667 0.00 0.00 0.00 3.51
183 184 2.281345 CCTCGCCATGCTCCCATC 60.281 66.667 0.00 0.00 0.00 3.51
184 185 3.882326 CCCTCGCCATGCTCCCAT 61.882 66.667 0.00 0.00 0.00 4.00
186 187 4.247380 CTCCCTCGCCATGCTCCC 62.247 72.222 0.00 0.00 0.00 4.30
187 188 4.925861 GCTCCCTCGCCATGCTCC 62.926 72.222 0.00 0.00 0.00 4.70
188 189 4.166888 TGCTCCCTCGCCATGCTC 62.167 66.667 0.00 0.00 0.00 4.26
189 190 4.172512 CTGCTCCCTCGCCATGCT 62.173 66.667 0.00 0.00 0.00 3.79
200 201 4.496336 ATCCGGCTTGCCTGCTCC 62.496 66.667 10.12 0.00 0.00 4.70
201 202 2.899339 GATCCGGCTTGCCTGCTC 60.899 66.667 10.12 0.76 0.00 4.26
202 203 4.496336 GGATCCGGCTTGCCTGCT 62.496 66.667 10.12 0.00 0.00 4.24
207 208 3.733344 TACAGCGGATCCGGCTTGC 62.733 63.158 33.98 17.75 40.19 4.01
208 209 1.883084 GTACAGCGGATCCGGCTTG 60.883 63.158 33.98 23.62 40.19 4.01
209 210 0.754217 TAGTACAGCGGATCCGGCTT 60.754 55.000 33.98 21.07 40.19 4.35
210 211 1.152819 TAGTACAGCGGATCCGGCT 60.153 57.895 33.98 26.73 40.19 5.52
211 212 1.007618 GTAGTACAGCGGATCCGGC 60.008 63.158 33.98 25.04 40.19 6.13
212 213 0.592148 GAGTAGTACAGCGGATCCGG 59.408 60.000 33.98 21.22 40.19 5.14
213 214 0.592148 GGAGTAGTACAGCGGATCCG 59.408 60.000 30.03 30.03 43.09 4.18
214 215 0.960286 GGGAGTAGTACAGCGGATCC 59.040 60.000 0.00 0.00 0.00 3.36
215 216 1.609555 CAGGGAGTAGTACAGCGGATC 59.390 57.143 2.52 0.00 0.00 3.36
216 217 1.214673 TCAGGGAGTAGTACAGCGGAT 59.785 52.381 2.52 0.00 0.00 4.18
217 218 0.622136 TCAGGGAGTAGTACAGCGGA 59.378 55.000 2.52 0.00 0.00 5.54
218 219 1.338337 CATCAGGGAGTAGTACAGCGG 59.662 57.143 2.52 0.00 0.00 5.52
219 220 1.269309 GCATCAGGGAGTAGTACAGCG 60.269 57.143 2.52 0.00 0.00 5.18
220 221 1.757118 TGCATCAGGGAGTAGTACAGC 59.243 52.381 2.52 0.00 0.00 4.40
221 222 2.101582 GGTGCATCAGGGAGTAGTACAG 59.898 54.545 2.52 0.00 0.00 2.74
222 223 2.108168 GGTGCATCAGGGAGTAGTACA 58.892 52.381 2.52 0.00 0.00 2.90
223 224 2.108168 TGGTGCATCAGGGAGTAGTAC 58.892 52.381 0.00 0.00 0.00 2.73
224 225 2.543037 TGGTGCATCAGGGAGTAGTA 57.457 50.000 0.00 0.00 0.00 1.82
225 226 1.885049 ATGGTGCATCAGGGAGTAGT 58.115 50.000 5.59 0.00 0.00 2.73
226 227 4.101585 TCTTTATGGTGCATCAGGGAGTAG 59.898 45.833 5.59 0.00 0.00 2.57
227 228 4.037222 TCTTTATGGTGCATCAGGGAGTA 58.963 43.478 5.59 0.00 0.00 2.59
228 229 2.846206 TCTTTATGGTGCATCAGGGAGT 59.154 45.455 5.59 0.00 0.00 3.85
229 230 3.565764 TCTTTATGGTGCATCAGGGAG 57.434 47.619 5.59 2.83 0.00 4.30
230 231 3.266772 ACTTCTTTATGGTGCATCAGGGA 59.733 43.478 5.59 0.00 0.00 4.20
231 232 3.624777 ACTTCTTTATGGTGCATCAGGG 58.375 45.455 5.59 0.00 0.00 4.45
232 233 6.757897 TTTACTTCTTTATGGTGCATCAGG 57.242 37.500 5.59 0.00 0.00 3.86
233 234 8.892723 TGTATTTACTTCTTTATGGTGCATCAG 58.107 33.333 5.59 0.00 0.00 2.90
234 235 8.800370 TGTATTTACTTCTTTATGGTGCATCA 57.200 30.769 0.00 0.00 0.00 3.07
235 236 9.109393 TCTGTATTTACTTCTTTATGGTGCATC 57.891 33.333 0.00 0.00 0.00 3.91
236 237 9.113838 CTCTGTATTTACTTCTTTATGGTGCAT 57.886 33.333 0.00 0.00 0.00 3.96
237 238 7.552687 CCTCTGTATTTACTTCTTTATGGTGCA 59.447 37.037 0.00 0.00 0.00 4.57
238 239 7.553044 ACCTCTGTATTTACTTCTTTATGGTGC 59.447 37.037 0.00 0.00 0.00 5.01
239 240 8.883731 CACCTCTGTATTTACTTCTTTATGGTG 58.116 37.037 0.00 0.00 33.11 4.17
240 241 7.553044 GCACCTCTGTATTTACTTCTTTATGGT 59.447 37.037 0.00 0.00 0.00 3.55
241 242 7.012421 GGCACCTCTGTATTTACTTCTTTATGG 59.988 40.741 0.00 0.00 0.00 2.74
242 243 7.920738 GGCACCTCTGTATTTACTTCTTTATG 58.079 38.462 0.00 0.00 0.00 1.90
301 303 3.002965 GCGGGGGATCGTTAAAATACTTG 59.997 47.826 0.00 0.00 0.00 3.16
346 349 5.732331 ATCCCCCTGTGATCATTTTTCTA 57.268 39.130 0.00 0.00 0.00 2.10
348 351 6.324770 ACATTATCCCCCTGTGATCATTTTTC 59.675 38.462 0.00 0.00 0.00 2.29
361 364 5.800653 AGGTTCTACTTACATTATCCCCCT 58.199 41.667 0.00 0.00 0.00 4.79
370 373 8.142551 GGACGAATATGAAGGTTCTACTTACAT 58.857 37.037 0.00 0.00 0.00 2.29
377 382 3.956199 ACCGGACGAATATGAAGGTTCTA 59.044 43.478 9.46 0.00 0.00 2.10
392 397 2.182825 CGAAACTTCTATGACCGGACG 58.817 52.381 9.46 0.00 0.00 4.79
552 557 0.378610 GGCCAAATTCGCTAGTGCTC 59.621 55.000 0.00 0.00 36.97 4.26
578 583 3.327754 GCCGGTGCGCATACGTAG 61.328 66.667 27.55 18.09 42.83 3.51
608 614 4.352039 GTGTATATATGGTCGCGATGGAG 58.648 47.826 14.06 0.00 0.00 3.86
609 615 3.129813 GGTGTATATATGGTCGCGATGGA 59.870 47.826 14.06 0.00 0.00 3.41
610 616 3.119280 TGGTGTATATATGGTCGCGATGG 60.119 47.826 14.06 0.00 0.00 3.51
612 618 4.497507 CGATGGTGTATATATGGTCGCGAT 60.498 45.833 14.06 0.00 0.00 4.58
614 620 3.105937 CGATGGTGTATATATGGTCGCG 58.894 50.000 0.00 0.00 0.00 5.87
615 621 4.106029 ACGATGGTGTATATATGGTCGC 57.894 45.455 0.00 0.00 0.00 5.19
616 622 5.100259 GGAACGATGGTGTATATATGGTCG 58.900 45.833 0.00 0.00 0.00 4.79
617 623 5.046878 TGGGAACGATGGTGTATATATGGTC 60.047 44.000 0.00 0.00 0.00 4.02
618 624 4.841813 TGGGAACGATGGTGTATATATGGT 59.158 41.667 0.00 0.00 0.00 3.55
723 729 3.765257 ATGAGGCTAGGAGGCGGCT 62.765 63.158 13.09 13.09 46.58 5.52
726 732 1.834378 TGGATGAGGCTAGGAGGCG 60.834 63.158 0.00 0.00 46.58 5.52
740 746 1.453379 GCAGGCAGCAGATGTGGAT 60.453 57.895 0.00 0.00 44.79 3.41
821 827 7.598759 ACTACCACTACTATACTTTGGATGG 57.401 40.000 0.00 0.00 0.00 3.51
940 1189 1.867363 ATTCCCGCTCCTAGAAGTGT 58.133 50.000 0.00 0.00 0.00 3.55
941 1190 2.990066 AATTCCCGCTCCTAGAAGTG 57.010 50.000 0.00 0.00 0.00 3.16
961 1210 2.802057 GCAGAAACACACCAGAGTACGT 60.802 50.000 0.00 0.00 0.00 3.57
1116 1365 0.933796 GCTGCCTCTTTATGCGAGAC 59.066 55.000 0.00 0.00 0.00 3.36
1125 1374 4.687215 TCGCGCTGCTGCCTCTTT 62.687 61.111 5.56 0.00 35.36 2.52
1323 1572 2.577059 GGAACGCCGGTGATCTGA 59.423 61.111 24.59 0.00 0.00 3.27
1417 1666 4.489771 AATCTCCGGCGGCAAGGG 62.490 66.667 23.83 8.61 0.00 3.95
1422 1671 1.958205 CATCTGAATCTCCGGCGGC 60.958 63.158 23.83 7.39 0.00 6.53
1529 1781 1.269361 ACGAACACGCATCACAGTACA 60.269 47.619 0.00 0.00 0.00 2.90
1530 1782 1.124297 CACGAACACGCATCACAGTAC 59.876 52.381 0.00 0.00 0.00 2.73
1531 1783 1.269361 ACACGAACACGCATCACAGTA 60.269 47.619 0.00 0.00 0.00 2.74
1532 1784 0.529773 ACACGAACACGCATCACAGT 60.530 50.000 0.00 0.00 0.00 3.55
1533 1785 0.111134 CACACGAACACGCATCACAG 60.111 55.000 0.00 0.00 0.00 3.66
1571 1826 0.179121 TACCAACGCCATAGCTCACG 60.179 55.000 0.00 0.00 36.60 4.35
1590 1845 4.342862 AGTAGTGCAAGTCAACAGTCAT 57.657 40.909 0.00 0.00 0.00 3.06
1606 1861 6.594937 TCACGTAGTTCCAAAACAAAAGTAGT 59.405 34.615 0.00 0.00 41.61 2.73
1740 1995 6.814954 ACACATCTCAGTTATATTCCAGGT 57.185 37.500 0.00 0.00 0.00 4.00
1830 2085 6.293407 GCTTGTGTCTGTACTGATGCTAAAAA 60.293 38.462 5.69 0.00 0.00 1.94
1831 2086 5.179368 GCTTGTGTCTGTACTGATGCTAAAA 59.821 40.000 5.69 0.00 0.00 1.52
1832 2087 4.690748 GCTTGTGTCTGTACTGATGCTAAA 59.309 41.667 5.69 0.00 0.00 1.85
1833 2088 4.245660 GCTTGTGTCTGTACTGATGCTAA 58.754 43.478 5.69 0.07 0.00 3.09
1834 2089 3.673323 CGCTTGTGTCTGTACTGATGCTA 60.673 47.826 5.69 0.00 0.00 3.49
1835 2090 2.693069 GCTTGTGTCTGTACTGATGCT 58.307 47.619 5.69 0.00 0.00 3.79
1836 2091 1.391485 CGCTTGTGTCTGTACTGATGC 59.609 52.381 5.69 3.20 0.00 3.91
1837 2092 1.391485 GCGCTTGTGTCTGTACTGATG 59.609 52.381 0.00 0.00 0.00 3.07
1838 2093 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
1839 2094 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
1840 2095 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
1841 2096 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
1842 2097 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
1843 2098 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
1844 2099 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
1845 2100 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
1846 2101 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
1847 2102 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
1848 2103 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
1849 2104 1.071239 GCGTGTATATGAGCGCTTGTG 60.071 52.381 13.26 0.00 45.48 3.33
1850 2105 1.209128 GCGTGTATATGAGCGCTTGT 58.791 50.000 13.26 5.98 45.48 3.16
1851 2106 0.159554 CGCGTGTATATGAGCGCTTG 59.840 55.000 13.26 0.00 46.56 4.01
1852 2107 2.506544 CGCGTGTATATGAGCGCTT 58.493 52.632 13.26 0.00 46.56 4.68
1853 2108 4.228451 CGCGTGTATATGAGCGCT 57.772 55.556 11.27 11.27 46.56 5.92
1856 2111 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
1857 2112 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
1858 2113 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
1859 2114 3.119628 GTGAGTGTATGCGCGTGTATATG 59.880 47.826 13.61 0.00 0.00 1.78
1860 2115 3.305964 GTGAGTGTATGCGCGTGTATAT 58.694 45.455 13.61 0.00 0.00 0.86
1861 2116 2.542205 GGTGAGTGTATGCGCGTGTATA 60.542 50.000 13.61 2.40 0.00 1.47
1862 2117 1.556564 GTGAGTGTATGCGCGTGTAT 58.443 50.000 13.61 4.63 0.00 2.29
1863 2118 0.457166 GGTGAGTGTATGCGCGTGTA 60.457 55.000 13.61 0.00 0.00 2.90
1864 2119 1.736645 GGTGAGTGTATGCGCGTGT 60.737 57.895 13.61 0.00 0.00 4.49
1865 2120 2.452813 GGGTGAGTGTATGCGCGTG 61.453 63.158 13.61 0.00 0.00 5.34
1866 2121 2.125673 GGGTGAGTGTATGCGCGT 60.126 61.111 8.43 7.55 0.00 6.01
1867 2122 2.011741 TAGGGGTGAGTGTATGCGCG 62.012 60.000 0.00 0.00 0.00 6.86
1868 2123 0.393077 ATAGGGGTGAGTGTATGCGC 59.607 55.000 0.00 0.00 0.00 6.09
1869 2124 1.686587 TCATAGGGGTGAGTGTATGCG 59.313 52.381 0.00 0.00 0.00 4.73
1870 2125 3.467803 GTTCATAGGGGTGAGTGTATGC 58.532 50.000 0.00 0.00 0.00 3.14
1871 2126 3.717707 CGTTCATAGGGGTGAGTGTATG 58.282 50.000 0.00 0.00 0.00 2.39
1872 2127 2.102588 GCGTTCATAGGGGTGAGTGTAT 59.897 50.000 0.00 0.00 0.00 2.29
1873 2128 1.479323 GCGTTCATAGGGGTGAGTGTA 59.521 52.381 0.00 0.00 0.00 2.90
1874 2129 0.249398 GCGTTCATAGGGGTGAGTGT 59.751 55.000 0.00 0.00 0.00 3.55
1875 2130 0.249120 TGCGTTCATAGGGGTGAGTG 59.751 55.000 0.00 0.00 0.00 3.51
1876 2131 0.249398 GTGCGTTCATAGGGGTGAGT 59.751 55.000 0.00 0.00 0.00 3.41
1877 2132 0.249120 TGTGCGTTCATAGGGGTGAG 59.751 55.000 0.00 0.00 0.00 3.51
1878 2133 0.036765 GTGTGCGTTCATAGGGGTGA 60.037 55.000 0.00 0.00 0.00 4.02
1879 2134 0.321210 TGTGTGCGTTCATAGGGGTG 60.321 55.000 0.00 0.00 0.00 4.61
1880 2135 0.321298 GTGTGTGCGTTCATAGGGGT 60.321 55.000 0.00 0.00 0.00 4.95
1881 2136 1.358725 CGTGTGTGCGTTCATAGGGG 61.359 60.000 0.00 0.00 0.00 4.79
1882 2137 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
1883 2138 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
1884 2139 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
1885 2140 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
1886 2141 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
1887 2142 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
1888 2143 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
1889 2144 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
1892 2147 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
1893 2148 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
1894 2149 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
1895 2150 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
1896 2151 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
1897 2152 0.104304 GTAGGGATAGGGTGTGCGTG 59.896 60.000 0.00 0.00 0.00 5.34
1898 2153 1.389609 CGTAGGGATAGGGTGTGCGT 61.390 60.000 0.00 0.00 0.00 5.24
1899 2154 1.105167 TCGTAGGGATAGGGTGTGCG 61.105 60.000 0.00 0.00 0.00 5.34
1900 2155 0.674534 CTCGTAGGGATAGGGTGTGC 59.325 60.000 0.00 0.00 0.00 4.57
1901 2156 0.674534 GCTCGTAGGGATAGGGTGTG 59.325 60.000 0.00 0.00 0.00 3.82
1902 2157 0.260816 TGCTCGTAGGGATAGGGTGT 59.739 55.000 0.00 0.00 0.00 4.16
1903 2158 0.674534 GTGCTCGTAGGGATAGGGTG 59.325 60.000 0.00 0.00 0.00 4.61
1904 2159 0.556747 AGTGCTCGTAGGGATAGGGT 59.443 55.000 0.00 0.00 0.00 4.34
1905 2160 1.614413 GAAGTGCTCGTAGGGATAGGG 59.386 57.143 0.00 0.00 0.00 3.53
1906 2161 1.614413 GGAAGTGCTCGTAGGGATAGG 59.386 57.143 0.00 0.00 0.00 2.57
1907 2162 1.267261 CGGAAGTGCTCGTAGGGATAG 59.733 57.143 0.00 0.00 0.00 2.08
1908 2163 1.134007 TCGGAAGTGCTCGTAGGGATA 60.134 52.381 0.00 0.00 0.00 2.59
1909 2164 0.395311 TCGGAAGTGCTCGTAGGGAT 60.395 55.000 0.00 0.00 0.00 3.85
1910 2165 0.609957 TTCGGAAGTGCTCGTAGGGA 60.610 55.000 0.00 0.00 0.00 4.20
1911 2166 0.245539 TTTCGGAAGTGCTCGTAGGG 59.754 55.000 0.00 0.00 0.00 3.53
1912 2167 1.201647 TCTTTCGGAAGTGCTCGTAGG 59.798 52.381 2.72 0.00 34.41 3.18
1913 2168 2.095161 AGTCTTTCGGAAGTGCTCGTAG 60.095 50.000 2.72 0.00 34.41 3.51
1914 2169 1.884579 AGTCTTTCGGAAGTGCTCGTA 59.115 47.619 2.72 0.00 34.41 3.43
1915 2170 0.674534 AGTCTTTCGGAAGTGCTCGT 59.325 50.000 2.72 0.00 34.41 4.18
1916 2171 1.063806 CAGTCTTTCGGAAGTGCTCG 58.936 55.000 2.72 0.00 34.41 5.03
1917 2172 2.333014 CTCAGTCTTTCGGAAGTGCTC 58.667 52.381 2.72 0.00 34.41 4.26
1918 2173 1.606737 GCTCAGTCTTTCGGAAGTGCT 60.607 52.381 2.72 0.46 34.41 4.40
1919 2174 0.793250 GCTCAGTCTTTCGGAAGTGC 59.207 55.000 2.72 0.00 34.41 4.40
1920 2175 1.433534 GGCTCAGTCTTTCGGAAGTG 58.566 55.000 2.72 0.00 34.41 3.16
1921 2176 0.038159 CGGCTCAGTCTTTCGGAAGT 60.038 55.000 2.72 0.00 34.41 3.01
1922 2177 0.737715 CCGGCTCAGTCTTTCGGAAG 60.738 60.000 0.00 0.00 42.94 3.46
1923 2178 1.292223 CCGGCTCAGTCTTTCGGAA 59.708 57.895 0.00 0.00 42.94 4.30
1924 2179 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
1925 2180 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
1926 2181 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
1927 2182 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
1928 2183 1.202698 GGATATGCCGGCTCAGTCTTT 60.203 52.381 29.70 3.35 0.00 2.52
1929 2184 0.394565 GGATATGCCGGCTCAGTCTT 59.605 55.000 29.70 5.10 0.00 3.01
1930 2185 1.476007 GGGATATGCCGGCTCAGTCT 61.476 60.000 29.70 6.09 37.63 3.24
1931 2186 1.004440 GGGATATGCCGGCTCAGTC 60.004 63.158 29.70 18.98 37.63 3.51
1932 2187 2.520536 GGGGATATGCCGGCTCAGT 61.521 63.158 29.70 13.44 37.63 3.41
1933 2188 2.055689 TTGGGGATATGCCGGCTCAG 62.056 60.000 29.70 0.00 37.63 3.35
1934 2189 2.075566 TTGGGGATATGCCGGCTCA 61.076 57.895 29.70 15.91 37.63 4.26
1935 2190 1.600916 GTTGGGGATATGCCGGCTC 60.601 63.158 29.70 17.20 37.63 4.70
1936 2191 2.515901 GTTGGGGATATGCCGGCT 59.484 61.111 29.70 15.76 37.63 5.52
1937 2192 2.597510 GGTTGGGGATATGCCGGC 60.598 66.667 22.73 22.73 37.63 6.13
1938 2193 2.115266 GGGTTGGGGATATGCCGG 59.885 66.667 7.23 0.00 37.63 6.13
1939 2194 1.528309 GTGGGTTGGGGATATGCCG 60.528 63.158 7.23 0.00 37.63 5.69
1940 2195 0.178990 GAGTGGGTTGGGGATATGCC 60.179 60.000 4.31 4.31 0.00 4.40
1941 2196 0.550914 TGAGTGGGTTGGGGATATGC 59.449 55.000 0.00 0.00 0.00 3.14
1942 2197 2.654863 GTTGAGTGGGTTGGGGATATG 58.345 52.381 0.00 0.00 0.00 1.78
1943 2198 1.569072 GGTTGAGTGGGTTGGGGATAT 59.431 52.381 0.00 0.00 0.00 1.63
1944 2199 0.996583 GGTTGAGTGGGTTGGGGATA 59.003 55.000 0.00 0.00 0.00 2.59
1945 2200 1.071314 TGGTTGAGTGGGTTGGGGAT 61.071 55.000 0.00 0.00 0.00 3.85
1946 2201 1.698116 TGGTTGAGTGGGTTGGGGA 60.698 57.895 0.00 0.00 0.00 4.81
1947 2202 1.530655 GTGGTTGAGTGGGTTGGGG 60.531 63.158 0.00 0.00 0.00 4.96
1948 2203 0.823356 CTGTGGTTGAGTGGGTTGGG 60.823 60.000 0.00 0.00 0.00 4.12
1949 2204 0.823356 CCTGTGGTTGAGTGGGTTGG 60.823 60.000 0.00 0.00 0.00 3.77
1950 2205 0.106719 ACCTGTGGTTGAGTGGGTTG 60.107 55.000 0.00 0.00 27.29 3.77
1951 2206 0.629058 AACCTGTGGTTGAGTGGGTT 59.371 50.000 0.71 0.00 45.07 4.11
1952 2207 2.317530 AACCTGTGGTTGAGTGGGT 58.682 52.632 0.71 0.00 45.07 4.51
1961 2216 4.473444 AGAAATGTGAATCAACCTGTGGT 58.527 39.130 0.00 0.00 37.65 4.16
1962 2217 5.458041 AAGAAATGTGAATCAACCTGTGG 57.542 39.130 0.00 0.00 0.00 4.17
1963 2218 7.482743 CGATTAAGAAATGTGAATCAACCTGTG 59.517 37.037 0.00 0.00 0.00 3.66
1964 2219 7.530010 CGATTAAGAAATGTGAATCAACCTGT 58.470 34.615 0.00 0.00 0.00 4.00
1965 2220 6.470235 GCGATTAAGAAATGTGAATCAACCTG 59.530 38.462 0.00 0.00 0.00 4.00
1966 2221 6.404734 GGCGATTAAGAAATGTGAATCAACCT 60.405 38.462 0.00 0.00 0.00 3.50
1967 2222 5.743872 GGCGATTAAGAAATGTGAATCAACC 59.256 40.000 0.00 0.00 0.00 3.77
1968 2223 6.555315 AGGCGATTAAGAAATGTGAATCAAC 58.445 36.000 0.00 0.00 0.00 3.18
1969 2224 6.757897 AGGCGATTAAGAAATGTGAATCAA 57.242 33.333 0.00 0.00 0.00 2.57
1970 2225 6.599244 AGAAGGCGATTAAGAAATGTGAATCA 59.401 34.615 0.00 0.00 0.00 2.57
1971 2226 7.011857 AGAGAAGGCGATTAAGAAATGTGAATC 59.988 37.037 0.00 0.00 0.00 2.52
1972 2227 6.825721 AGAGAAGGCGATTAAGAAATGTGAAT 59.174 34.615 0.00 0.00 0.00 2.57
1973 2228 6.173339 AGAGAAGGCGATTAAGAAATGTGAA 58.827 36.000 0.00 0.00 0.00 3.18
1974 2229 5.734720 AGAGAAGGCGATTAAGAAATGTGA 58.265 37.500 0.00 0.00 0.00 3.58
1975 2230 6.758886 ACTAGAGAAGGCGATTAAGAAATGTG 59.241 38.462 0.00 0.00 0.00 3.21
1976 2231 6.758886 CACTAGAGAAGGCGATTAAGAAATGT 59.241 38.462 0.00 0.00 0.00 2.71
1977 2232 6.292596 GCACTAGAGAAGGCGATTAAGAAATG 60.293 42.308 0.00 0.00 0.00 2.32
1995 2250 6.782082 ACTACTGAAGAATGATGCACTAGA 57.218 37.500 0.00 0.00 0.00 2.43
2034 2302 3.568538 CAAAATTTGACCGAGCCTTCAG 58.431 45.455 0.00 0.00 0.00 3.02
2120 2397 3.371102 TCTGAACAAAGAGGAGTGTCG 57.629 47.619 0.00 0.00 0.00 4.35
2144 2421 2.653726 TGAGAATGCAGTGGTGTTTGT 58.346 42.857 0.00 0.00 0.00 2.83
2286 2589 3.496884 TCGCTGCTTTGTTTAAGGTGTAG 59.503 43.478 0.00 0.00 34.26 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.