>input_sequence_78101
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------------------------------------------------ATGGAGATGATTCCGCCGGCTGCGGCGTCGTC
GGCGCCACCACGCCATGGCGGCGCGGTCACCGAGGAGGAGCGGCAGCGCAAACGGAAGACCTCAAACCGCCTCTCAGCGC
AGAGGTCTCGCATAAAGAGGCAGCAGCGCGAGGACAATCTGGTCGTGCGCGCGGCCCAGCTCGAGATCGACAACAACGCC
ATGCGTGTCACCACCGCCCTCGTGCAGCAGCAATGCAGCCTGGTCGAGCAGCAGAACCGTGTGCTCTTCGCAGACGCTCG
TTGCCTCTACAGCCTTCTCCAGCAGCAAAACTCCCAGCTCCGCATGCTCGGTCAGATCACCGGCGTTCCGATGGACGTGC
AGGAAATCCCCGTCCACCTCACGCAGCTGTACGGCGGCCTGCAGACGCCACCGCCGCCGCCCCTGCCCTTGCCGCCGGAG
ATTCAGATGATGTTCCAGCCGGAGCAGCTCGATGATATCATGGACGATGCAGGGAGTCTCCCGTGGCTCTGA--------
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>chr4A_1_TraesCS4A01G120500
CTGTACTACGGACAAGACTTGCCTGCTCCCCCAGCGTGCTCCCATCCATGCTCCGGCATATGTGTCACGATTTGATTGAA
ACAAAATAAGGCCCGGCCCCACCCCCTTAAAATCAGAGGGGAGATGATTAAATTAAAAAGAAAAAAAGAAAAAAAGACAG
CCGTAGGATGAAGTGGGAGCACGGATGGGAGCATGGCGAGGGAGCAGGCAAGCCGGATCCGCTGTACTACTCCCTGATGC
ACCATAAAGAAGT-AAATACAGAGGTGCCCTTTTGGTCAGACAAACGACACCTCGAATGAACCAAGTATTTTAACGATCC
CCCGCAAAATAAAATATAGAGATCA-TTTAGAAAAATGATCACAGGGGGATAA--TGTAAGTAGAACCTTCATATTCGTC
CGGTCATAGAAGTTTCGTACGTACTTCGTTGGCACCATTGGAAAATTCAATGCATGCATGCTGCGGCACTGACAGCTCCG
CCAATGAGGCAAGCCCAACATCGCAACAACAAAAGCGACGTCTCCATACATTTTTACGAGTTGGTTGGTACGCACAGAGC
ACTAGCGAATTTGGCCGGCGGCCTACGTATGCGCACCGGCGAAGGGGCTC-CCCTCCATCGCGACCATATATACACCATC
GTTCCCAGAAGAAACATCAACCAGGCCATTCGCACCCCTCGAGCTCCGGCGGAAGTGCTGCCCGCGCCGTCCATGTCGAC
GCCGCCGCAGCCGCCTCCTAGCCTCATCCACATCTGCTGCCTGCACTCGCTCTCCATCGTCCTCCTCCACTTCCTCTACG
TGATCTCCTGATCCGCCCCCCTCTCCCCATCCAAAGTATAGTAGTGGTAGTAGTGTGTTTCCTT-----CTACGTTCTTG
TTTCCGTACCTTCTTCTTCCTCCGGCTTGCAAGTAAGTACTACGTTCTCCA-----------------------------
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-------------------------------------------------CCGCTCCTGGTACACTGGTACACTTCTAGGA
GCGGGAATTACGTACTCTGGTGTGTTTCTGCGTGATACTCTACAACAAATGGAGATGATTCCGCCGGCTGCGGCGTCGTC
GGCGCCACCACGCCATGGCGGCGCGGTCACCGAGGAGGAGCGGCAGCGCAAACGGAAGACCTCAAACCGCCTCTCAGCGC
AGAGGTCTCGCATAAAGAGGCAGCAGCGCGAGGACAATCTGGTCGTGCGCGCGGCCCAGCTCGAGATCGACAACAACGCC
ATGCGTGTCACCACCGCCCTCGTGCAGCAGCAATGCAGCCTGGTCGAGCAGCAGAACCGTGTGCTCTTCGCAGACGCTCG
TTGCCTCTACAGCCTTCTCCAGCAGCAAAACTCCCAGCTCCGCATGCTCGGTCAGATCACCGGCGTTCCGATGGACGTGC
AGGAAATCCCCGTCCACCTCACGCAGCTGTACGGCGGCCTGCAGACGCCACCGCCGCCGCCCCTGCCCTTGCCGCCGGAG
ATTCAGATGATGTTCCAGCCGGAGCAGCTCGATGATATCATGGACGATGCAGGGAGTCTCCCGTGGCTCTGACTCGGGAG
CGTATTA---TCATATTGTGTGTACTGTGATGCGTGTTCGTGTGGTGCTAGTAGT---GTGATGACGTGAGCTATGGCGT
TGGTATGACTGTTGACTTGCACTACTTTTGTTTTGGAACTACGTGAGTTTCTTGTGTGAACTTGTACGTGTAGTACGTAC
ACAAGAGTGTGATGTGTTGCTCTATAGTACAATATTTGAATAAATAAGTCAAGTTTGTGAAGTTGTGTTGTTGCACCTGG
AATATAACTGAGATGTGTATCTAGCAGATCTCGCAAAATATCTATCTATGGAAAGCCAGTGAGATATCATTTCTTAATCG
CCTTTTTTTAGCATCAGTACAGACACAAGCGCTCATATACACGCGCATACACTCACCCCTATGAACGCACACACGCACAC
CCTATCCCTACGAGCACTTCCGAAAGACTGAGCCGGCATATCCCCAACCCACTCAACCACAGGTTGATTCACATTTCTTA
ATCGCCTTCTCTAGTGCATCATTCTTCAGT--AG---TTAGTACTTGGA--------TCTTCTGAAGGCTCGGTCAAATT
TTGCCATCGTCCAATAGCAGATCAACTGACACTCCTTTTGACAATAATTTTTTTTTA---------AAAAAAATACCGAC
ACTCCTCTTTGTTCAGATTCACAAACACCACTGCATTCTCAAAAATACCGATTGTTT-----------------------
---GTTGCACACAAACGAACAAATTAACGTCCGGTGGTCGCTGCCATCTGATACGGCTGATACGGACGCCGACGCAACCG
ATGCTGAGCTGCTGATCGCGAAGTGCTTCTACACCTTAAACAAAGCAGCGACACTCGAGCGTGACTAGACGTCGATGCGT
GGATGCGTGAGCGTGATGCGGACCGGCAGACTTCG-CGTCTCCTGGCTTGTCGTCACCGCGGGCACCGCGACGCCGGGCA
GACGGCATGCATCGCTATTCACGGACCAGCCGGGAGGCTTTAATTTGCCTCCGTCGACTTCACCATGCACGACGGCGATG
GTGGTTT
>chr4B_244
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---ATAAAGAAGTAAAATACACAGGTGCCCTTTTGGTCAGACAAAGGACACCTCGAATGAACGAAGTATTTTAACGATCC
CCCGCAAAATAAAATATAGAGATCATTTAAAAAAAATGATCACGGGGGGAGATACTGTAAGCAGAACCTTCATATTTGTC
AGGTCATGGAAGTTTCCTACGTACTTGGTTGGCACCATTGGAAAATTCAATGCATGCATGCTGCAGCACTGACAGCTCCG
CCAATGAGGCAAGCCCAACGTCGCAACAACAAAAGCGACGTCTCCATACATTTTTACGAGTTGGTTGGTACGCACACAGC
ACTAGCGAATTTGGCCGGCGGCGTACGTACGCACACCGGCAAAGGGGCCTTCCTCGCCT-----CCATATATACACCATC
GTTCCCAGAAGAAACATCAACCAAGCCATCCGCACCCCTCGAGCTCCGGCGGAAGTGCTGCCCGCGCCGTCCATGTCGAC
GCCGCCGCCGCTGCCTCCTAGCCTCCTCCACATCTGCTGCCTGCACTCGCTCTCCATCGTCCTCCTCCANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGCTCCTAGTAC-----T--ACTTCTAGGA
GCGGGAATTGCTTAATCCGGTGTGTTTCTGCGTGATAT-----AACAAATGGAGATGATTCCGCCTGCTGCGGCGTCGTC
GGCGCCATCACGCCGTGGTGGCGCGGTCACCGAGGAAGAGCGGCAGCGCAAACGCAAGACCTCCAACCGCCTCTCGGCGC
AGAGATCTCGCATGAAAAGGCAGCAGCGCGAGGACAATCTGGCCGCGCGCGCGGCCCAGCTCGAGACCGACAACGAGGCC
ATGCGTGTCACCACCGGCCTCGTGCAGCAGCAATGCAGCCTGGTCGAGCAGCAGAATCGTGTGCTCTCGGCGGACGCTCG
TTACCTGTACAGCCTTCTCCAGCAGCGGAACTCCCAGCTCCGCCAGCTCGGGGAGCTCGCCGGCGTTCCGATGGACGTGC
AGGAAATCCCCGTCCACCTCACACAGCTGTACGGCGGCCTGCAGACGCCACCAGCGCCGCCCCTGTCCTTCCCGCCGGAG
ATTCAGATGATGTTCCAGCCGGACCAGCTCGATGATATCATGGACGATGCAGGAAGTCTCCCGTGGCTCTGACTCGGGAG
CATATTAGTATCATATTCTG-----TGTGATGCGTGTTTGTGTGGTACTACTAGTAGTGTGATGATGTGAGCTATGGCGT
TGGTGTGACTGTTGACTTTTCCTAGTTCTGTTTTGGAACTACGTGAGTTTCTTGTGTGAACTTCTACGTGTA----GTAC
ACAAGAGTGTGATGTGTTGCTCTATAGTACAATATTTGAATAAATAAGTCAAGTTTGTGAAGTTGTGTTGCGCCTGAACC
---ATAACTGAGATGTGTATCTAGCATATCTCGCAAAATATCTATCTATGGAAAGCCAGTGAGATATTACTGT-------
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------------------------------------------------------------------------ATTTCTTA
ATCTCCTTCGCTAGTGCATCATTCTTCAGTGTAG---TTAGTACCTGGATCTTTTCTTCTTTTGAAGGCTCGGTCAAATT
TTGCCATCGTCTAATAGCAGATCAACTGACACCCCTTTTGATAA------------ATTAATAAATAAATAAATACTGAC
ACTGCTCTTTGTTCAGATTCGCAAACACCACTGCATTCTCAAATCATGAAGAAGAAAACAAACTGGAGACGTTGCCGATG
TTCTTTGCACACAAACGAACAAATTAACGCCCGGTGGTCGCTGCCATCTGATACGGCTGATACGGACGCCGACGCAACCG
ATGCTGAGTTGCTGATCGCGAAGTGCTTATACACCTTAAACAAACCAGCGACACTCGAGCGTGACTAGACGTCGATGCGT
GGATGCGTGAGCGTGATGCGGACCGGCAGACTTCG-CGTCTCCTGGCTTGTCGTCACCGCGGGCGCCGCGACGCCGGGCA
GACGGCATGCATCGCTATTCACGGACCAGCCGGGAGACTTTAATTTGCCTCCGTCGACTTCACCATGCACGACGGCGATG
GTGGTTT
>chr4D_246
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-----AAAGAAGTAAAATACACAGGTGCCCTTTTGGTCAGACAAAGGACACCTCGAATGAACTAAGTATTTTAACGA---
-------------------AGATCGTTTAGAAAAAAATCACAGGGGGGAAT--ACTGTAAACAGAACCTTCATATTTGTC
CGGTCATGGAAGTTTCATACGTACTTCGTTGGCACCATTGGAAAATTCAATGCATGCATGCTGCAGCACTGACAGCTTCG
CCAATGAGGCAAGTCCAACGTCGCAACAACAAAAGCGACGTCTCCATACATTTTTACGAGTTGGTTGGTACGCACACAGC
ACTAGCGAATTTGGCCGGCGGCGTACGTATGCACACCGGCAAAGGGGCTC-CCTCGCCT-----CCATATATACACCATC
GTTCCCAGAAGAAACATCAAGCAAGCCATCCGCACCCCTCGAGCTCCGGCGGAAGTGCTGCCCGCGCCGTCCATGTCGAC
GCCGCCGCCGCTGCCTCCTAGCCTCCTCCACATCTGCTGCCTGCACTCACTCTCCATCGTCCTCCTCCACTTCCTCTACG
TGATCTCCTGATCCGCCCCCCTCTCCTCATCCAAAGTATAGTAGTGGTAGTAGTGTGTTTCCTTTCCTTCTACGTTCTTG
TTTCCGTACCTTCTTCTTCCTCCGGCTTGCAAGTAAGTGCTACGTTCTCCA-----------------------------
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-------------------------------------------------CCGCTCCTGGTACACTGGT--ACTTCTAGGA
GCGGGAATTGCGTGCTCTGGTGTGTTTCTGCGTGATACTCTACAACAAATGGAGATGATTCCGCCGGCTGCGGCGGCGGC
GGCGCCACCACGCCGTGGCGGCGCGGTCACCGAGGAGGAGCGGCAGCGCAAACGGAAGACCTCCAACCGCCTCTCGGCGC
AGAGATCTCGCGTTAAGAGGCAGCAGCGCGAGGACAATCTGGCCGCGCGCGTGGCCCAGCTCTCGATCGACAACGAGGCC
ATGCGTGTCACCACCGGCCTCGTGCAGCAGCAATGCAGCCTGGTCGAGCAGCAGAACCGTGTGCTCTTCGCAGACGCTCG
TTGCCTCTACAGCCTTCTCCAGCAGCAAAACTCCCAACTCCGCTTGCTCGGGCAGATCACCGGCGTTCCGATGGACGTGC
AGGAAATCCCCGTCCACCTCACACAGCTGTACGGCGGCCTGCAGACGCCACCGGCGCCGCCCCTATCCTTCCCGCCGGAG
ATTCAGATGATGTTCCAGCCGGAGCAGCTCGATGATATCATGGACGATGCAGGGAGTCTCCCGTGGCTCTGACTCGGGAG
CGTATTA---TCATATTGTG-----TGTGATGCGTGTTCGTGTGGTGCTAGTAGT---GTGATGATGTGAGCTATGGCGT
TGCTGCGACTGTTGACTTGCCCTACTTTTGTTTTGGCACTACGTGAGTTTCTTGTG--AACTTGTACGTGTA----GTAC
ACAAGAGTGTGATGTGTTGCTCTATACTACAATATTTGAATAAATAAGTCAAGTTTGTGAAGTTGTGTTGTTGCGCCTGG
AATATAACTGAGATGTGTATCTAGCAGATCTCGCAAA-----TATCTACAGAAAGCCAGTGAGCTATC------------
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------------------------------------------------------------------------ATTTCTTA
ATCGCCTTCGCTAGTGCATCATTCTCCAGT--AGTTATTAGTACTTGGA--------TCTTTTGAAGGCTCGGTCAAATT
TTGCCATCGTCCAATAGCAGATCAACTGACACTCCGTTTGATAA------------A---------AAAAAAATACTGAC
ACTCCTCTTTGTTCAGATTCGCAAACACCACTGCATTCTCAAATCATGAAGAAGAAAAAAAAGTGGAGACGTTGCCGTGG
TTCGTTGCACACAAACGAACAAATTAACGCCTGGTGGTCGCTGCCATCTGATACGGCTGATACGGACGCCGACGCAACCG
ATGCTGAGTTGCTGATCGCGAAGTGCTTATACACCTTAAACAAAGCAGCGACACTCGAGCGTGACTAGACGTCGATGCGT
GAGTGCGTGAGCGCGATGCGGACCGCCAGACTTCGCCGTCTCCTGGCTTGTCGTCACAGCGGGCGCCTCGACGCCGGGCA
GACGGCATGCATCGCTATTCACGGACCAGCCGGGAGGCTTTAATTTGCCTCCGTCGACTTCACCATGCACGACGGCGATG
GTGGTTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS------------------S-----------------------S----------------S-----------------
----------------------------S-S------------S--------S--------S--------------S---
-------S--------S-----------------------------------------------S---------------
-------------------S--------------------------------------------------------S---
----------------------S---------S-------S------------SSS-S-SSSSS----------------
-----------------------S-----S--------------------------------------------------
--------S--S-------------S------------------------------------------------------
--------------------------S-----------------------------------------------------
--------------------------------------S-----------------------------------------
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--------------------------------------------------------------------SS----------
---------S----------------------------------------------------------------------
--------------S------------------------------------------------S-----------S----
----S--------S----------------------------S--S----------------------------S-S---
----------------S---------------------------------------------------------------
-------------------------------------------S-------S----------------------------
----------------------S------------------------------S-----------S----S---------
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--------------------SSSSS----------------------------------------S--------------
----S---------------S---------------------------------------------------SSSS----
--------------------------------------------------------------------------S-----
---------------------------------------------------------------------S-SSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------
---------S---------------------------------------------------S------------------
-----------------------------------------S--SSSSSSSSSSSS--------------------S---
--------------------S----------------------SSSSSSSSSS-SSS-----------------------
-----------------------------S--------------------------------------------------
--------S-------------------S---------------------------------------------------
----------------------------------------------------------------S---------------
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>forward_115
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---------------GCCCCACCCCCTTAAAATCA---------------------------------------------
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>reverse_2133
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----------------------------------------------------TCACCCCTATGAACGCACAC--------
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