Multiple sequence alignment - TraesCS4A01G119300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G119300 chr4A 100.000 2597 0 0 1 2597 147365981 147363385 0.000000e+00 4796
1 TraesCS4A01G119300 chr4D 90.887 1613 68 31 8 1604 324213277 324214826 0.000000e+00 2091
2 TraesCS4A01G119300 chr4D 84.211 456 41 8 2146 2597 324215687 324216115 5.170000e-112 414
3 TraesCS4A01G119300 chr4D 97.170 106 3 0 1736 1841 324214956 324215061 2.050000e-41 180
4 TraesCS4A01G119300 chr4D 96.875 96 3 0 1639 1734 324214826 324214921 7.440000e-36 161
5 TraesCS4A01G119300 chr4B 93.695 904 20 11 834 1734 404567801 404568670 0.000000e+00 1319
6 TraesCS4A01G119300 chr4B 88.662 441 20 11 401 838 404567364 404567777 6.410000e-141 510
7 TraesCS4A01G119300 chr4B 89.098 266 9 10 125 385 404567038 404567288 1.940000e-81 313
8 TraesCS4A01G119300 chr2B 81.081 296 49 4 2306 2596 555089851 555089558 2.010000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G119300 chr4A 147363385 147365981 2596 True 4796.0 4796 100.00000 1 2597 1 chr4A.!!$R1 2596
1 TraesCS4A01G119300 chr4D 324213277 324216115 2838 False 711.5 2091 92.28575 8 2597 4 chr4D.!!$F1 2589
2 TraesCS4A01G119300 chr4B 404567038 404568670 1632 False 714.0 1319 90.48500 125 1734 3 chr4B.!!$F1 1609

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 1014 0.038455 CATCCCACCCCACCGTTTTA 59.962 55.0 0.0 0.0 0.0 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2250 2815 0.03467 GCCCACTCTCATCTTTGCCT 60.035 55.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.249657 TGCAATGCGAAACCCAAACC 60.250 50.000 0.00 0.00 0.00 3.27
30 31 1.864082 CAATGCGAAACCCAAACCAAC 59.136 47.619 0.00 0.00 0.00 3.77
31 32 1.115467 ATGCGAAACCCAAACCAACA 58.885 45.000 0.00 0.00 0.00 3.33
32 33 0.895530 TGCGAAACCCAAACCAACAA 59.104 45.000 0.00 0.00 0.00 2.83
33 34 1.134965 TGCGAAACCCAAACCAACAAG 60.135 47.619 0.00 0.00 0.00 3.16
72 73 3.376935 ATCAGACGCGGGCAGGAAG 62.377 63.158 12.47 0.00 0.00 3.46
82 83 3.044305 GCAGGAAGACGCGCTTGT 61.044 61.111 18.16 0.00 36.83 3.16
119 120 1.344763 CTAGCTAGCCGGCCAACTAAT 59.655 52.381 26.15 4.77 0.00 1.73
200 204 1.000827 CCGATCTCACGAGGAATGGAG 60.001 57.143 0.00 0.00 35.09 3.86
249 258 3.362851 GAAATGGTCGCACGTCGCC 62.363 63.158 0.00 8.42 37.30 5.54
322 331 1.066215 CCCAACTCGATCATCACCACA 60.066 52.381 0.00 0.00 0.00 4.17
385 397 7.650104 CCCATTCTCGACTCTATTTCTTTCTAC 59.350 40.741 0.00 0.00 0.00 2.59
387 399 9.232082 CATTCTCGACTCTATTTCTTTCTACTG 57.768 37.037 0.00 0.00 0.00 2.74
390 402 9.100554 TCTCGACTCTATTTCTTTCTACTGTAG 57.899 37.037 8.55 8.55 0.00 2.74
392 404 9.228949 TCGACTCTATTTCTTTCTACTGTAGTT 57.771 33.333 14.11 0.00 0.00 2.24
397 409 9.939802 TCTATTTCTTTCTACTGTAGTTTTCCC 57.060 33.333 14.11 0.00 0.00 3.97
399 411 5.494390 TCTTTCTACTGTAGTTTTCCCCC 57.506 43.478 14.11 0.00 0.00 5.40
417 489 3.123392 CCCCCTCTCTTTTCTCCTAGT 57.877 52.381 0.00 0.00 0.00 2.57
418 490 4.267341 CCCCCTCTCTTTTCTCCTAGTA 57.733 50.000 0.00 0.00 0.00 1.82
492 564 1.678970 GCCAGCCAATTCCCGTTCT 60.679 57.895 0.00 0.00 0.00 3.01
505 577 2.903784 TCCCGTTCTCCAGAATCTTCAA 59.096 45.455 0.00 0.00 36.33 2.69
506 578 3.326588 TCCCGTTCTCCAGAATCTTCAAA 59.673 43.478 0.00 0.00 36.33 2.69
507 579 4.072131 CCCGTTCTCCAGAATCTTCAAAA 58.928 43.478 0.00 0.00 36.33 2.44
508 580 4.518970 CCCGTTCTCCAGAATCTTCAAAAA 59.481 41.667 0.00 0.00 36.33 1.94
509 581 5.335191 CCCGTTCTCCAGAATCTTCAAAAAG 60.335 44.000 0.00 0.00 36.33 2.27
510 582 5.470098 CCGTTCTCCAGAATCTTCAAAAAGA 59.530 40.000 0.00 0.00 45.36 2.52
511 583 6.017109 CCGTTCTCCAGAATCTTCAAAAAGAA 60.017 38.462 0.00 0.00 44.49 2.52
543 615 5.801350 TGTCCAAAATCTTCATGATCGTC 57.199 39.130 0.00 0.00 33.57 4.20
587 659 6.930068 ATTGTTAGGTTGTGTAGTACTCCT 57.070 37.500 0.00 0.61 37.77 3.69
730 808 0.320508 GACCTCACTTTCACGGGGAC 60.321 60.000 0.00 0.00 0.00 4.46
742 820 4.862823 GGGGACGGGGGAGAGGAG 62.863 77.778 0.00 0.00 0.00 3.69
744 822 4.779733 GGACGGGGGAGAGGAGCA 62.780 72.222 0.00 0.00 0.00 4.26
745 823 3.151022 GACGGGGGAGAGGAGCAG 61.151 72.222 0.00 0.00 0.00 4.24
748 826 3.160748 GGGGGAGAGGAGCAGCTC 61.161 72.222 14.69 14.69 0.00 4.09
749 827 3.535962 GGGGAGAGGAGCAGCTCG 61.536 72.222 16.47 0.00 31.95 5.03
750 828 3.535962 GGGAGAGGAGCAGCTCGG 61.536 72.222 16.47 0.00 31.95 4.63
751 829 2.757917 GGAGAGGAGCAGCTCGGT 60.758 66.667 16.47 5.95 31.95 4.69
791 869 5.106237 CCATTTCTTGGCTTCTTCTTCTCTG 60.106 44.000 0.00 0.00 39.09 3.35
882 1003 1.526917 CATTCGCTCCCATCCCACC 60.527 63.158 0.00 0.00 0.00 4.61
883 1004 2.757124 ATTCGCTCCCATCCCACCC 61.757 63.158 0.00 0.00 0.00 4.61
886 1007 4.129148 GCTCCCATCCCACCCCAC 62.129 72.222 0.00 0.00 0.00 4.61
887 1008 3.420482 CTCCCATCCCACCCCACC 61.420 72.222 0.00 0.00 0.00 4.61
890 1011 3.657350 CCATCCCACCCCACCGTT 61.657 66.667 0.00 0.00 0.00 4.44
891 1012 2.438795 CATCCCACCCCACCGTTT 59.561 61.111 0.00 0.00 0.00 3.60
892 1013 1.228737 CATCCCACCCCACCGTTTT 60.229 57.895 0.00 0.00 0.00 2.43
893 1014 0.038455 CATCCCACCCCACCGTTTTA 59.962 55.000 0.00 0.00 0.00 1.52
894 1015 0.778720 ATCCCACCCCACCGTTTTAA 59.221 50.000 0.00 0.00 0.00 1.52
895 1016 0.778720 TCCCACCCCACCGTTTTAAT 59.221 50.000 0.00 0.00 0.00 1.40
896 1017 1.991070 TCCCACCCCACCGTTTTAATA 59.009 47.619 0.00 0.00 0.00 0.98
897 1018 2.093890 CCCACCCCACCGTTTTAATAC 58.906 52.381 0.00 0.00 0.00 1.89
898 1019 2.093890 CCACCCCACCGTTTTAATACC 58.906 52.381 0.00 0.00 0.00 2.73
899 1020 2.554785 CCACCCCACCGTTTTAATACCA 60.555 50.000 0.00 0.00 0.00 3.25
900 1021 2.488937 CACCCCACCGTTTTAATACCAC 59.511 50.000 0.00 0.00 0.00 4.16
919 1040 2.590092 CTCCGTCCCAACCATCCC 59.410 66.667 0.00 0.00 0.00 3.85
920 1041 1.995626 CTCCGTCCCAACCATCCCT 60.996 63.158 0.00 0.00 0.00 4.20
923 1044 1.995626 CGTCCCAACCATCCCTCCT 60.996 63.158 0.00 0.00 0.00 3.69
925 1046 1.307866 TCCCAACCATCCCTCCTCC 60.308 63.158 0.00 0.00 0.00 4.30
927 1048 1.619363 CCAACCATCCCTCCTCCCA 60.619 63.158 0.00 0.00 0.00 4.37
943 1064 2.511373 CACCGCGCCATTAGCAGA 60.511 61.111 0.00 0.00 44.04 4.26
944 1065 2.202932 ACCGCGCCATTAGCAGAG 60.203 61.111 0.00 0.00 44.04 3.35
945 1066 3.643978 CCGCGCCATTAGCAGAGC 61.644 66.667 0.00 0.00 44.04 4.09
946 1067 2.587194 CGCGCCATTAGCAGAGCT 60.587 61.111 0.00 0.00 44.04 4.09
947 1068 2.176273 CGCGCCATTAGCAGAGCTT 61.176 57.895 0.00 0.00 44.04 3.74
948 1069 0.875908 CGCGCCATTAGCAGAGCTTA 60.876 55.000 0.00 0.00 44.04 3.09
949 1070 1.299541 GCGCCATTAGCAGAGCTTAA 58.700 50.000 0.00 0.00 44.04 1.85
1359 1490 4.847444 GGGCTGCGGAGGAAGCTC 62.847 72.222 5.93 0.00 39.46 4.09
1396 1527 3.459378 GAAGCCGACGACGCCGATA 62.459 63.158 4.74 0.00 39.50 2.92
1413 1544 2.194271 GATAGGTCGGCAAAGAACGAG 58.806 52.381 0.00 0.00 40.09 4.18
1414 1545 0.245539 TAGGTCGGCAAAGAACGAGG 59.754 55.000 0.00 0.00 40.09 4.63
1415 1546 2.677979 GGTCGGCAAAGAACGAGGC 61.678 63.158 0.00 0.00 40.09 4.70
1417 1548 3.788766 CGGCAAAGAACGAGGCGG 61.789 66.667 0.00 0.00 45.92 6.13
1418 1549 4.103103 GGCAAAGAACGAGGCGGC 62.103 66.667 0.00 0.00 0.00 6.53
1419 1550 4.445545 GCAAAGAACGAGGCGGCG 62.446 66.667 0.51 0.51 37.29 6.46
1420 1551 3.788766 CAAAGAACGAGGCGGCGG 61.789 66.667 9.78 1.88 35.12 6.13
1456 1590 0.267356 AATGGAGAGGAGGGAGGAGG 59.733 60.000 0.00 0.00 0.00 4.30
1617 1751 4.640201 TGAATTTCTTTCCGATGGATGACC 59.360 41.667 0.00 0.00 33.04 4.02
1634 1768 1.374758 CCAGACAAGGTGAGCCGAC 60.375 63.158 0.00 0.00 40.50 4.79
1635 1769 1.668294 CAGACAAGGTGAGCCGACT 59.332 57.895 0.00 0.00 40.50 4.18
1636 1770 0.888619 CAGACAAGGTGAGCCGACTA 59.111 55.000 0.00 0.00 40.50 2.59
1734 1870 3.016031 TGTTCTGTCAACTGCATGTGTT 58.984 40.909 0.00 0.00 0.00 3.32
1779 1948 3.083293 TGAAATTAAGCCCCCGTGTAAC 58.917 45.455 0.00 0.00 0.00 2.50
1784 1953 5.892524 ATTAAGCCCCCGTGTAACTATAA 57.107 39.130 0.00 0.00 31.75 0.98
1819 1988 1.375908 GGTTGAGCGCTGTGGATCA 60.376 57.895 18.48 1.55 0.00 2.92
1847 2016 8.945481 ATGGAAATTAATCGAATTGCAATGAA 57.055 26.923 13.82 1.75 37.82 2.57
1848 2017 8.768957 TGGAAATTAATCGAATTGCAATGAAA 57.231 26.923 13.82 1.36 37.82 2.69
1849 2018 9.381033 TGGAAATTAATCGAATTGCAATGAAAT 57.619 25.926 13.82 3.86 37.82 2.17
1850 2019 9.853921 GGAAATTAATCGAATTGCAATGAAATC 57.146 29.630 13.82 5.72 37.82 2.17
1851 2020 9.558891 GAAATTAATCGAATTGCAATGAAATCG 57.441 29.630 20.14 20.14 37.82 3.34
1852 2021 8.633075 AATTAATCGAATTGCAATGAAATCGT 57.367 26.923 23.37 12.73 36.35 3.73
1853 2022 9.729023 AATTAATCGAATTGCAATGAAATCGTA 57.271 25.926 23.37 14.45 36.35 3.43
1854 2023 9.729023 ATTAATCGAATTGCAATGAAATCGTAA 57.271 25.926 23.37 17.67 0.00 3.18
1855 2024 9.729023 TTAATCGAATTGCAATGAAATCGTAAT 57.271 25.926 23.37 12.72 0.00 1.89
1856 2025 7.842525 ATCGAATTGCAATGAAATCGTAATC 57.157 32.000 23.37 9.77 0.00 1.75
1857 2026 7.015226 TCGAATTGCAATGAAATCGTAATCT 57.985 32.000 23.37 1.81 0.00 2.40
1858 2027 7.125755 TCGAATTGCAATGAAATCGTAATCTC 58.874 34.615 23.37 9.19 0.00 2.75
1859 2028 6.906678 CGAATTGCAATGAAATCGTAATCTCA 59.093 34.615 13.82 0.00 0.00 3.27
1860 2029 7.111179 CGAATTGCAATGAAATCGTAATCTCAG 59.889 37.037 13.82 0.00 0.00 3.35
1861 2030 5.739752 TGCAATGAAATCGTAATCTCAGG 57.260 39.130 0.00 0.00 0.00 3.86
1883 2052 4.463891 GGTCATGGTTCCTGAATTGTGATT 59.536 41.667 0.00 0.00 0.00 2.57
1890 2059 1.672881 CCTGAATTGTGATTCTCCGGC 59.327 52.381 0.00 0.00 41.80 6.13
1900 2085 4.137543 GTGATTCTCCGGCCTTATTCAAT 58.862 43.478 0.00 0.00 0.00 2.57
1905 2090 7.505585 TGATTCTCCGGCCTTATTCAATAAATT 59.494 33.333 0.00 0.00 0.00 1.82
1911 2096 6.238897 CCGGCCTTATTCAATAAATTGCTACA 60.239 38.462 0.00 0.00 37.68 2.74
1979 2544 1.893801 ACACTAAGAGGGGAGTCAACG 59.106 52.381 0.00 0.00 0.00 4.10
1982 2547 0.606604 TAAGAGGGGAGTCAACGTGC 59.393 55.000 0.00 0.00 0.00 5.34
1987 2552 0.893727 GGGGAGTCAACGTGCCATTT 60.894 55.000 0.00 0.00 0.00 2.32
1996 2561 2.267351 CGTGCCATTTCTGGTGCCA 61.267 57.895 0.00 0.00 45.10 4.92
2026 2591 6.618811 ACGATCGAGTGAGTAACAAAAGTAT 58.381 36.000 24.34 0.00 0.00 2.12
2045 2610 5.030147 AGTATTTCTCCTGACCCACATGTA 58.970 41.667 0.00 0.00 0.00 2.29
2060 2625 3.752796 TGTAAGTGACATAGGCGGC 57.247 52.632 0.00 0.00 31.20 6.53
2074 2639 0.464193 GGCGGCGAGGGGTAAAAATA 60.464 55.000 12.98 0.00 0.00 1.40
2079 2644 3.558033 GGCGAGGGGTAAAAATATCCAA 58.442 45.455 0.00 0.00 0.00 3.53
2081 2646 4.587262 GGCGAGGGGTAAAAATATCCAAAT 59.413 41.667 0.00 0.00 0.00 2.32
2084 2649 7.143340 GCGAGGGGTAAAAATATCCAAATAAC 58.857 38.462 0.00 0.00 0.00 1.89
2086 2651 7.012610 CGAGGGGTAAAAATATCCAAATAACGT 59.987 37.037 0.00 0.00 0.00 3.99
2089 2654 9.304731 GGGGTAAAAATATCCAAATAACGTTTC 57.695 33.333 5.91 0.00 0.00 2.78
2095 2660 6.839820 ATATCCAAATAACGTTTCGGAGAC 57.160 37.500 5.91 0.00 34.32 3.36
2096 2661 3.992643 TCCAAATAACGTTTCGGAGACA 58.007 40.909 5.91 0.00 34.32 3.41
2097 2662 4.378774 TCCAAATAACGTTTCGGAGACAA 58.621 39.130 5.91 0.00 34.32 3.18
2098 2663 4.815308 TCCAAATAACGTTTCGGAGACAAA 59.185 37.500 5.91 0.00 34.32 2.83
2099 2664 5.296283 TCCAAATAACGTTTCGGAGACAAAA 59.704 36.000 5.91 0.00 34.32 2.44
2100 2665 5.972382 CCAAATAACGTTTCGGAGACAAAAA 59.028 36.000 5.91 0.00 34.32 1.94
2158 2723 7.454260 AAAAAGTTTCAGAGACAGTCAAACT 57.546 32.000 9.81 9.81 38.62 2.66
2165 2730 3.249559 CAGAGACAGTCAAACTCCTTTGC 59.750 47.826 2.66 0.00 37.31 3.68
2166 2731 3.135530 AGAGACAGTCAAACTCCTTTGCT 59.864 43.478 2.66 0.00 37.31 3.91
2172 2737 1.946768 TCAAACTCCTTTGCTTGGACG 59.053 47.619 0.00 0.00 37.31 4.79
2173 2738 1.946768 CAAACTCCTTTGCTTGGACGA 59.053 47.619 0.00 0.00 30.64 4.20
2179 2744 2.357637 TCCTTTGCTTGGACGAAAACAG 59.642 45.455 0.00 0.00 0.00 3.16
2183 2748 2.499197 TGCTTGGACGAAAACAGCATA 58.501 42.857 0.00 0.00 0.00 3.14
2184 2749 2.483877 TGCTTGGACGAAAACAGCATAG 59.516 45.455 0.00 0.00 0.00 2.23
2185 2750 2.742053 GCTTGGACGAAAACAGCATAGA 59.258 45.455 0.00 0.00 0.00 1.98
2188 2753 3.849911 TGGACGAAAACAGCATAGAGAG 58.150 45.455 0.00 0.00 0.00 3.20
2190 2755 3.119101 GGACGAAAACAGCATAGAGAGGA 60.119 47.826 0.00 0.00 0.00 3.71
2196 2761 6.758886 CGAAAACAGCATAGAGAGGAGTATTT 59.241 38.462 0.00 0.00 0.00 1.40
2197 2762 7.278868 CGAAAACAGCATAGAGAGGAGTATTTT 59.721 37.037 0.00 0.00 0.00 1.82
2201 2766 8.484214 ACAGCATAGAGAGGAGTATTTTCATA 57.516 34.615 0.00 0.00 0.00 2.15
2205 2770 7.062839 GCATAGAGAGGAGTATTTTCATAAGCG 59.937 40.741 0.00 0.00 0.00 4.68
2209 2774 4.770795 AGGAGTATTTTCATAAGCGCACT 58.229 39.130 11.47 0.00 0.00 4.40
2211 2776 5.986135 AGGAGTATTTTCATAAGCGCACTAG 59.014 40.000 11.47 0.00 0.00 2.57
2214 2779 6.338146 AGTATTTTCATAAGCGCACTAGACA 58.662 36.000 11.47 0.00 0.00 3.41
2221 2786 1.827681 AGCGCACTAGACAGAAGAGA 58.172 50.000 11.47 0.00 0.00 3.10
2228 2793 4.800914 GCACTAGACAGAAGAGAGGCAAAA 60.801 45.833 0.00 0.00 0.00 2.44
2242 2807 6.660521 AGAGAGGCAAAATTGAACACATGATA 59.339 34.615 0.00 0.00 0.00 2.15
2253 2818 9.807649 AATTGAACACATGATATTTTTAGAGGC 57.192 29.630 0.00 0.00 0.00 4.70
2303 2868 6.127338 GGGAAAGAATGGAATTGTCCCTAAAG 60.127 42.308 0.00 0.00 44.23 1.85
2325 2890 7.681939 AAGATTTTCAGCATGCAAATTTCAT 57.318 28.000 21.98 2.97 41.85 2.57
2331 2896 7.764695 TTCAGCATGCAAATTTCATCATAAG 57.235 32.000 21.98 0.00 34.76 1.73
2337 2902 6.709145 TGCAAATTTCATCATAAGTGTTGC 57.291 33.333 0.00 0.00 39.35 4.17
2350 2915 0.234884 GTGTTGCTAGTGCGTTGTCC 59.765 55.000 0.00 0.00 43.34 4.02
2396 2965 1.166989 TCAGCTGAAATTGCATGCGA 58.833 45.000 15.67 10.79 0.00 5.10
2397 2966 1.746787 TCAGCTGAAATTGCATGCGAT 59.253 42.857 15.67 15.05 0.00 4.58
2420 2989 4.458989 TGTTGAATTGGGTGAGCTTGATAC 59.541 41.667 0.00 0.00 0.00 2.24
2434 3003 1.377690 TGATACAGGGAAAGGGGCAA 58.622 50.000 0.00 0.00 0.00 4.52
2435 3004 1.713647 TGATACAGGGAAAGGGGCAAA 59.286 47.619 0.00 0.00 0.00 3.68
2436 3005 2.314549 TGATACAGGGAAAGGGGCAAAT 59.685 45.455 0.00 0.00 0.00 2.32
2437 3006 3.245948 TGATACAGGGAAAGGGGCAAATT 60.246 43.478 0.00 0.00 0.00 1.82
2438 3007 4.017037 TGATACAGGGAAAGGGGCAAATTA 60.017 41.667 0.00 0.00 0.00 1.40
2440 3009 3.592865 ACAGGGAAAGGGGCAAATTAAA 58.407 40.909 0.00 0.00 0.00 1.52
2441 3010 4.175172 ACAGGGAAAGGGGCAAATTAAAT 58.825 39.130 0.00 0.00 0.00 1.40
2442 3011 5.346270 ACAGGGAAAGGGGCAAATTAAATA 58.654 37.500 0.00 0.00 0.00 1.40
2443 3012 5.425217 ACAGGGAAAGGGGCAAATTAAATAG 59.575 40.000 0.00 0.00 0.00 1.73
2444 3013 4.968719 AGGGAAAGGGGCAAATTAAATAGG 59.031 41.667 0.00 0.00 0.00 2.57
2445 3014 4.444306 GGGAAAGGGGCAAATTAAATAGGC 60.444 45.833 0.00 0.00 0.00 3.93
2446 3015 4.408921 GGAAAGGGGCAAATTAAATAGGCT 59.591 41.667 0.00 0.00 0.00 4.58
2447 3016 5.453339 GGAAAGGGGCAAATTAAATAGGCTC 60.453 44.000 0.00 0.00 0.00 4.70
2448 3017 4.264373 AGGGGCAAATTAAATAGGCTCA 57.736 40.909 0.00 0.00 0.00 4.26
2449 3018 4.819610 AGGGGCAAATTAAATAGGCTCAT 58.180 39.130 0.00 0.00 0.00 2.90
2450 3019 5.218959 AGGGGCAAATTAAATAGGCTCATT 58.781 37.500 0.00 0.00 0.00 2.57
2451 3020 6.381250 AGGGGCAAATTAAATAGGCTCATTA 58.619 36.000 0.00 0.00 0.00 1.90
2452 3021 6.267699 AGGGGCAAATTAAATAGGCTCATTAC 59.732 38.462 0.00 0.00 0.00 1.89
2453 3022 6.041523 GGGGCAAATTAAATAGGCTCATTACA 59.958 38.462 0.00 0.00 0.00 2.41
2454 3023 7.147976 GGGCAAATTAAATAGGCTCATTACAG 58.852 38.462 0.00 0.00 0.00 2.74
2455 3024 7.014230 GGGCAAATTAAATAGGCTCATTACAGA 59.986 37.037 0.00 0.00 0.00 3.41
2456 3025 8.078596 GGCAAATTAAATAGGCTCATTACAGAG 58.921 37.037 0.00 0.00 38.68 3.35
2457 3026 8.078596 GCAAATTAAATAGGCTCATTACAGAGG 58.921 37.037 0.00 0.00 36.15 3.69
2458 3027 9.125026 CAAATTAAATAGGCTCATTACAGAGGT 57.875 33.333 0.00 0.00 36.15 3.85
2459 3028 8.910351 AATTAAATAGGCTCATTACAGAGGTC 57.090 34.615 0.00 0.00 36.15 3.85
2460 3029 7.676683 TTAAATAGGCTCATTACAGAGGTCT 57.323 36.000 0.00 0.00 36.15 3.85
2475 3044 0.036732 GGTCTGGGCACACAAGATGA 59.963 55.000 0.00 0.00 0.00 2.92
2487 3056 5.855395 GCACACAAGATGAAGTTCTCATTTC 59.145 40.000 4.17 0.00 45.23 2.17
2492 3061 7.802251 CACAAGATGAAGTTCTCATTTCAAGTC 59.198 37.037 4.17 0.00 45.23 3.01
2525 3094 2.152016 GAGGAAGGTGTTTGGTGCTAC 58.848 52.381 0.00 0.00 0.00 3.58
2539 3108 3.871006 TGGTGCTACGATTGCATTTCTAG 59.129 43.478 0.00 0.00 42.69 2.43
2570 3139 3.057736 GCAAATGAGCATTCAGTCACACT 60.058 43.478 0.00 0.00 36.61 3.55
2587 3156 4.096532 TCACACTGATATTCTCGTGGAGAC 59.903 45.833 0.00 0.00 38.51 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.995258 GGTTTCGCATTGCATTGTTCAT 59.005 40.909 9.69 0.00 0.00 2.57
1 2 2.402305 GGTTTCGCATTGCATTGTTCA 58.598 42.857 9.69 0.00 0.00 3.18
2 3 1.726248 GGGTTTCGCATTGCATTGTTC 59.274 47.619 9.69 0.00 0.00 3.18
3 4 1.069823 TGGGTTTCGCATTGCATTGTT 59.930 42.857 9.69 0.00 0.00 2.83
4 5 0.678395 TGGGTTTCGCATTGCATTGT 59.322 45.000 9.69 0.00 0.00 2.71
5 6 1.793258 TTGGGTTTCGCATTGCATTG 58.207 45.000 9.69 4.20 0.00 2.82
6 7 2.142319 GTTTGGGTTTCGCATTGCATT 58.858 42.857 9.69 0.00 0.00 3.56
16 17 2.549926 CTGCTTGTTGGTTTGGGTTTC 58.450 47.619 0.00 0.00 0.00 2.78
27 28 1.676967 GCCTCTCCCCTGCTTGTTG 60.677 63.158 0.00 0.00 0.00 3.33
50 51 2.434185 TGCCCGCGTCTGATGAAC 60.434 61.111 4.92 0.00 0.00 3.18
72 73 3.182572 CCTAGAATAATCACAAGCGCGTC 59.817 47.826 8.43 0.00 0.00 5.19
104 105 0.463654 CAGCATTAGTTGGCCGGCTA 60.464 55.000 28.56 19.98 0.00 3.93
105 106 1.750399 CAGCATTAGTTGGCCGGCT 60.750 57.895 28.56 9.11 0.00 5.52
106 107 2.046285 ACAGCATTAGTTGGCCGGC 61.046 57.895 21.18 21.18 0.00 6.13
107 108 1.802636 CACAGCATTAGTTGGCCGG 59.197 57.895 0.00 0.00 0.00 6.13
249 258 1.137825 GTCTCAGCTCCGACCGAAG 59.862 63.158 1.30 0.00 0.00 3.79
322 331 2.124901 CGGTGTGGTGTGTGGTGT 60.125 61.111 0.00 0.00 0.00 4.16
397 409 3.123392 ACTAGGAGAAAAGAGAGGGGG 57.877 52.381 0.00 0.00 0.00 5.40
399 411 4.611367 TGGTACTAGGAGAAAAGAGAGGG 58.389 47.826 0.00 0.00 0.00 4.30
416 488 4.579647 TCAGGGAAAGGGTTTATGGTAC 57.420 45.455 0.00 0.00 0.00 3.34
417 489 5.974370 AGTATCAGGGAAAGGGTTTATGGTA 59.026 40.000 0.00 0.00 0.00 3.25
418 490 4.794067 AGTATCAGGGAAAGGGTTTATGGT 59.206 41.667 0.00 0.00 0.00 3.55
468 540 2.183555 GAATTGGCTGGCTGCAGC 59.816 61.111 30.88 30.88 46.78 5.25
472 544 1.937546 GAACGGGAATTGGCTGGCTG 61.938 60.000 2.00 0.00 0.00 4.85
473 545 1.678970 GAACGGGAATTGGCTGGCT 60.679 57.895 2.00 0.00 0.00 4.75
474 546 1.657751 GAGAACGGGAATTGGCTGGC 61.658 60.000 0.00 0.00 0.00 4.85
475 547 1.032114 GGAGAACGGGAATTGGCTGG 61.032 60.000 0.00 0.00 0.00 4.85
483 555 2.903784 TGAAGATTCTGGAGAACGGGAA 59.096 45.455 0.00 0.00 36.80 3.97
509 581 9.859427 TGAAGATTTTGGACAATGATGTAATTC 57.141 29.630 0.00 0.00 40.74 2.17
511 583 9.811995 CATGAAGATTTTGGACAATGATGTAAT 57.188 29.630 0.00 0.00 40.74 1.89
649 721 1.602377 CCCGCTTCGACTTGTTTTTCT 59.398 47.619 0.00 0.00 0.00 2.52
731 809 3.160748 GAGCTGCTCCTCTCCCCC 61.161 72.222 18.80 0.00 0.00 5.40
732 810 3.535962 CGAGCTGCTCCTCTCCCC 61.536 72.222 22.97 0.00 0.00 4.81
734 812 1.893919 AAACCGAGCTGCTCCTCTCC 61.894 60.000 22.97 0.00 0.00 3.71
735 813 0.459411 GAAACCGAGCTGCTCCTCTC 60.459 60.000 22.97 11.14 0.00 3.20
736 814 1.188219 TGAAACCGAGCTGCTCCTCT 61.188 55.000 22.97 6.03 0.00 3.69
738 816 0.108585 TTTGAAACCGAGCTGCTCCT 59.891 50.000 22.97 6.38 0.00 3.69
739 817 0.238553 GTTTGAAACCGAGCTGCTCC 59.761 55.000 22.97 9.71 0.00 4.70
740 818 0.238553 GGTTTGAAACCGAGCTGCTC 59.761 55.000 19.53 19.53 42.62 4.26
741 819 2.331265 GGTTTGAAACCGAGCTGCT 58.669 52.632 11.83 0.00 42.62 4.24
742 820 4.944249 GGTTTGAAACCGAGCTGC 57.056 55.556 11.83 0.00 42.62 5.25
750 828 1.068417 GGCGGGTTGGGTTTGAAAC 59.932 57.895 0.00 0.00 0.00 2.78
751 829 0.760945 ATGGCGGGTTGGGTTTGAAA 60.761 50.000 0.00 0.00 0.00 2.69
882 1003 2.093890 GGGTGGTATTAAAACGGTGGG 58.906 52.381 0.00 0.00 0.00 4.61
883 1004 3.011818 GAGGGTGGTATTAAAACGGTGG 58.988 50.000 0.00 0.00 0.00 4.61
884 1005 3.011818 GGAGGGTGGTATTAAAACGGTG 58.988 50.000 0.00 0.00 0.00 4.94
885 1006 2.355007 CGGAGGGTGGTATTAAAACGGT 60.355 50.000 0.00 0.00 0.00 4.83
886 1007 2.282407 CGGAGGGTGGTATTAAAACGG 58.718 52.381 0.00 0.00 0.00 4.44
887 1008 2.931969 GACGGAGGGTGGTATTAAAACG 59.068 50.000 0.00 0.00 0.00 3.60
888 1009 3.273434 GGACGGAGGGTGGTATTAAAAC 58.727 50.000 0.00 0.00 0.00 2.43
889 1010 2.239402 GGGACGGAGGGTGGTATTAAAA 59.761 50.000 0.00 0.00 0.00 1.52
890 1011 1.839354 GGGACGGAGGGTGGTATTAAA 59.161 52.381 0.00 0.00 0.00 1.52
891 1012 1.273724 TGGGACGGAGGGTGGTATTAA 60.274 52.381 0.00 0.00 0.00 1.40
892 1013 0.339162 TGGGACGGAGGGTGGTATTA 59.661 55.000 0.00 0.00 0.00 0.98
893 1014 0.548197 TTGGGACGGAGGGTGGTATT 60.548 55.000 0.00 0.00 0.00 1.89
894 1015 1.081462 TTGGGACGGAGGGTGGTAT 59.919 57.895 0.00 0.00 0.00 2.73
895 1016 1.914764 GTTGGGACGGAGGGTGGTA 60.915 63.158 0.00 0.00 0.00 3.25
896 1017 3.246880 GTTGGGACGGAGGGTGGT 61.247 66.667 0.00 0.00 0.00 4.16
897 1018 4.029809 GGTTGGGACGGAGGGTGG 62.030 72.222 0.00 0.00 0.00 4.61
898 1019 2.536997 GATGGTTGGGACGGAGGGTG 62.537 65.000 0.00 0.00 0.00 4.61
899 1020 2.204090 ATGGTTGGGACGGAGGGT 60.204 61.111 0.00 0.00 0.00 4.34
900 1021 2.590092 GATGGTTGGGACGGAGGG 59.410 66.667 0.00 0.00 0.00 4.30
923 1044 4.849310 GCTAATGGCGCGGTGGGA 62.849 66.667 8.83 0.00 0.00 4.37
925 1046 3.576356 CTGCTAATGGCGCGGTGG 61.576 66.667 8.83 0.00 45.43 4.61
927 1048 2.202932 CTCTGCTAATGGCGCGGT 60.203 61.111 8.83 0.00 45.43 5.68
943 1064 1.680338 GATCGGCAATGGGTTAAGCT 58.320 50.000 4.41 0.00 0.00 3.74
944 1065 0.307760 CGATCGGCAATGGGTTAAGC 59.692 55.000 7.38 0.00 0.00 3.09
945 1066 1.867233 CTCGATCGGCAATGGGTTAAG 59.133 52.381 16.41 0.00 0.00 1.85
946 1067 1.948104 CTCGATCGGCAATGGGTTAA 58.052 50.000 16.41 0.00 0.00 2.01
947 1068 0.531974 GCTCGATCGGCAATGGGTTA 60.532 55.000 16.41 0.00 0.00 2.85
948 1069 1.819632 GCTCGATCGGCAATGGGTT 60.820 57.895 16.41 0.00 0.00 4.11
949 1070 2.203070 GCTCGATCGGCAATGGGT 60.203 61.111 16.41 0.00 0.00 4.51
1348 1479 1.999071 CTGGACGAGAGCTTCCTCCG 61.999 65.000 3.88 0.00 38.96 4.63
1359 1490 2.492090 CGGCTCTTCCTGGACGAG 59.508 66.667 22.20 22.20 32.20 4.18
1396 1527 1.004918 CCTCGTTCTTTGCCGACCT 60.005 57.895 0.00 0.00 0.00 3.85
1542 1676 0.716108 CACGCTCTTCGATGGTGTTC 59.284 55.000 0.00 0.00 41.67 3.18
1617 1751 0.888619 TAGTCGGCTCACCTTGTCTG 59.111 55.000 0.00 0.00 0.00 3.51
1634 1768 5.784177 TGACAAGTCAAAGAAGCCTACTAG 58.216 41.667 0.00 0.00 36.53 2.57
1635 1769 5.801531 TGACAAGTCAAAGAAGCCTACTA 57.198 39.130 0.00 0.00 36.53 1.82
1636 1770 4.689612 TGACAAGTCAAAGAAGCCTACT 57.310 40.909 0.00 0.00 36.53 2.57
1734 1870 3.876341 TGCACTATCTCATCACATGCAA 58.124 40.909 0.00 0.00 38.56 4.08
1784 1953 5.591877 GCTCAACCATCCAACTAATCAATCT 59.408 40.000 0.00 0.00 0.00 2.40
1841 2010 6.908870 TGACCTGAGATTACGATTTCATTG 57.091 37.500 0.00 0.00 0.00 2.82
1842 2011 6.484643 CCATGACCTGAGATTACGATTTCATT 59.515 38.462 0.00 0.00 0.00 2.57
1843 2012 5.994054 CCATGACCTGAGATTACGATTTCAT 59.006 40.000 0.00 0.00 0.00 2.57
1844 2013 5.104941 ACCATGACCTGAGATTACGATTTCA 60.105 40.000 0.00 0.00 0.00 2.69
1845 2014 5.360591 ACCATGACCTGAGATTACGATTTC 58.639 41.667 0.00 0.00 0.00 2.17
1846 2015 5.359194 ACCATGACCTGAGATTACGATTT 57.641 39.130 0.00 0.00 0.00 2.17
1847 2016 5.359194 AACCATGACCTGAGATTACGATT 57.641 39.130 0.00 0.00 0.00 3.34
1848 2017 4.202264 GGAACCATGACCTGAGATTACGAT 60.202 45.833 0.00 0.00 0.00 3.73
1849 2018 3.132289 GGAACCATGACCTGAGATTACGA 59.868 47.826 0.00 0.00 0.00 3.43
1850 2019 3.133003 AGGAACCATGACCTGAGATTACG 59.867 47.826 0.00 0.00 34.99 3.18
1851 2020 4.762289 AGGAACCATGACCTGAGATTAC 57.238 45.455 0.00 0.00 34.99 1.89
1859 2028 3.074390 TCACAATTCAGGAACCATGACCT 59.926 43.478 0.00 0.00 36.92 3.85
1860 2029 3.420893 TCACAATTCAGGAACCATGACC 58.579 45.455 0.00 0.00 0.00 4.02
1861 2030 5.416952 AGAATCACAATTCAGGAACCATGAC 59.583 40.000 0.00 0.00 43.21 3.06
1883 2052 5.009610 GCAATTTATTGAATAAGGCCGGAGA 59.990 40.000 5.05 0.00 40.14 3.71
1966 2531 2.047179 GGCACGTTGACTCCCCTC 60.047 66.667 0.00 0.00 0.00 4.30
1970 2535 1.197721 CAGAAATGGCACGTTGACTCC 59.802 52.381 0.00 0.00 0.00 3.85
1979 2544 3.776158 TGGCACCAGAAATGGCAC 58.224 55.556 0.00 0.00 46.63 5.01
1982 2547 1.140161 CGCATGGCACCAGAAATGG 59.860 57.895 0.00 0.00 0.00 3.16
1987 2552 2.520465 ATCGTTCGCATGGCACCAGA 62.520 55.000 0.00 0.00 0.00 3.86
1996 2561 0.452184 ACTCACTCGATCGTTCGCAT 59.548 50.000 15.94 0.00 45.10 4.73
2008 2573 8.713271 CAGGAGAAATACTTTTGTTACTCACTC 58.287 37.037 0.00 0.00 0.00 3.51
2010 2575 8.496751 GTCAGGAGAAATACTTTTGTTACTCAC 58.503 37.037 0.00 0.00 0.00 3.51
2011 2576 7.660208 GGTCAGGAGAAATACTTTTGTTACTCA 59.340 37.037 0.00 0.00 0.00 3.41
2026 2591 3.650942 ACTTACATGTGGGTCAGGAGAAA 59.349 43.478 9.11 0.00 0.00 2.52
2045 2610 1.141881 CTCGCCGCCTATGTCACTT 59.858 57.895 0.00 0.00 0.00 3.16
2058 2623 3.217681 TGGATATTTTTACCCCTCGCC 57.782 47.619 0.00 0.00 0.00 5.54
2059 2624 5.784578 ATTTGGATATTTTTACCCCTCGC 57.215 39.130 0.00 0.00 0.00 5.03
2060 2625 7.012610 ACGTTATTTGGATATTTTTACCCCTCG 59.987 37.037 0.00 0.00 0.00 4.63
2074 2639 4.571919 TGTCTCCGAAACGTTATTTGGAT 58.428 39.130 9.02 0.00 41.11 3.41
2134 2699 7.362142 GGAGTTTGACTGTCTCTGAAACTTTTT 60.362 37.037 18.92 4.10 37.07 1.94
2135 2700 6.094186 GGAGTTTGACTGTCTCTGAAACTTTT 59.906 38.462 18.92 4.36 37.07 2.27
2136 2701 5.586643 GGAGTTTGACTGTCTCTGAAACTTT 59.413 40.000 18.92 4.90 37.07 2.66
2137 2702 5.104735 AGGAGTTTGACTGTCTCTGAAACTT 60.105 40.000 18.92 7.31 37.07 2.66
2138 2703 4.407296 AGGAGTTTGACTGTCTCTGAAACT 59.593 41.667 18.31 18.31 39.08 2.66
2139 2704 4.698575 AGGAGTTTGACTGTCTCTGAAAC 58.301 43.478 9.51 10.65 0.00 2.78
2140 2705 5.359194 AAGGAGTTTGACTGTCTCTGAAA 57.641 39.130 9.51 0.00 0.00 2.69
2141 2706 5.118990 CAAAGGAGTTTGACTGTCTCTGAA 58.881 41.667 9.51 0.00 45.22 3.02
2142 2707 4.697514 CAAAGGAGTTTGACTGTCTCTGA 58.302 43.478 9.51 0.00 45.22 3.27
2143 2708 3.249559 GCAAAGGAGTTTGACTGTCTCTG 59.750 47.826 9.51 0.00 45.22 3.35
2144 2709 3.135530 AGCAAAGGAGTTTGACTGTCTCT 59.864 43.478 9.51 5.07 45.22 3.10
2145 2710 3.471680 AGCAAAGGAGTTTGACTGTCTC 58.528 45.455 9.51 0.00 45.22 3.36
2146 2711 3.567478 AGCAAAGGAGTTTGACTGTCT 57.433 42.857 9.51 0.00 45.22 3.41
2147 2712 3.243201 CCAAGCAAAGGAGTTTGACTGTC 60.243 47.826 0.00 0.00 45.22 3.51
2148 2713 2.689983 CCAAGCAAAGGAGTTTGACTGT 59.310 45.455 2.05 0.00 45.22 3.55
2149 2714 2.951642 TCCAAGCAAAGGAGTTTGACTG 59.048 45.455 2.05 0.00 45.22 3.51
2150 2715 2.952310 GTCCAAGCAAAGGAGTTTGACT 59.048 45.455 2.05 0.00 45.22 3.41
2158 2723 2.357637 CTGTTTTCGTCCAAGCAAAGGA 59.642 45.455 0.00 0.00 0.00 3.36
2165 2730 4.245660 TCTCTATGCTGTTTTCGTCCAAG 58.754 43.478 0.00 0.00 0.00 3.61
2166 2731 4.245660 CTCTCTATGCTGTTTTCGTCCAA 58.754 43.478 0.00 0.00 0.00 3.53
2172 2737 8.499403 AAAATACTCCTCTCTATGCTGTTTTC 57.501 34.615 0.00 0.00 0.00 2.29
2173 2738 8.103305 TGAAAATACTCCTCTCTATGCTGTTTT 58.897 33.333 0.00 0.00 0.00 2.43
2179 2744 7.062839 CGCTTATGAAAATACTCCTCTCTATGC 59.937 40.741 0.00 0.00 0.00 3.14
2183 2748 5.163405 TGCGCTTATGAAAATACTCCTCTCT 60.163 40.000 9.73 0.00 0.00 3.10
2184 2749 5.050490 TGCGCTTATGAAAATACTCCTCTC 58.950 41.667 9.73 0.00 0.00 3.20
2185 2750 4.811557 GTGCGCTTATGAAAATACTCCTCT 59.188 41.667 9.73 0.00 0.00 3.69
2188 2753 5.983720 TCTAGTGCGCTTATGAAAATACTCC 59.016 40.000 9.73 0.00 0.00 3.85
2190 2755 6.338146 TGTCTAGTGCGCTTATGAAAATACT 58.662 36.000 9.73 1.47 0.00 2.12
2196 2761 4.157840 TCTTCTGTCTAGTGCGCTTATGAA 59.842 41.667 9.73 3.22 0.00 2.57
2197 2762 3.694566 TCTTCTGTCTAGTGCGCTTATGA 59.305 43.478 9.73 0.00 0.00 2.15
2201 2766 2.163412 CTCTCTTCTGTCTAGTGCGCTT 59.837 50.000 9.73 0.00 0.00 4.68
2205 2770 1.821753 TGCCTCTCTTCTGTCTAGTGC 59.178 52.381 0.00 0.00 0.00 4.40
2209 2774 6.114187 TCAATTTTGCCTCTCTTCTGTCTA 57.886 37.500 0.00 0.00 0.00 2.59
2211 2776 5.009010 TGTTCAATTTTGCCTCTCTTCTGTC 59.991 40.000 0.00 0.00 0.00 3.51
2214 2779 4.889409 TGTGTTCAATTTTGCCTCTCTTCT 59.111 37.500 0.00 0.00 0.00 2.85
2221 2786 8.851541 AAAATATCATGTGTTCAATTTTGCCT 57.148 26.923 0.00 0.00 0.00 4.75
2228 2793 8.970020 TGCCTCTAAAAATATCATGTGTTCAAT 58.030 29.630 0.00 0.00 0.00 2.57
2242 2807 6.376581 CCACTCTCATCTTTGCCTCTAAAAAT 59.623 38.462 0.00 0.00 0.00 1.82
2250 2815 0.034670 GCCCACTCTCATCTTTGCCT 60.035 55.000 0.00 0.00 0.00 4.75
2253 2818 0.674581 TGCGCCCACTCTCATCTTTG 60.675 55.000 4.18 0.00 0.00 2.77
2303 2868 7.067532 TGATGAAATTTGCATGCTGAAAATC 57.932 32.000 20.33 13.94 34.61 2.17
2325 2890 3.313012 ACGCACTAGCAACACTTATGA 57.687 42.857 0.00 0.00 42.27 2.15
2331 2896 0.234884 GGACAACGCACTAGCAACAC 59.765 55.000 0.00 0.00 42.27 3.32
2337 2902 2.479837 TCTGTTTGGACAACGCACTAG 58.520 47.619 0.00 0.00 34.85 2.57
2350 2915 5.106436 TGCTAGCAACTCATCATTCTGTTTG 60.106 40.000 16.84 0.00 0.00 2.93
2396 2965 3.499338 TCAAGCTCACCCAATTCAACAT 58.501 40.909 0.00 0.00 0.00 2.71
2397 2966 2.942804 TCAAGCTCACCCAATTCAACA 58.057 42.857 0.00 0.00 0.00 3.33
2420 2989 4.842531 ATTTAATTTGCCCCTTTCCCTG 57.157 40.909 0.00 0.00 0.00 4.45
2434 3003 8.718656 AGACCTCTGTAATGAGCCTATTTAATT 58.281 33.333 0.00 0.00 33.02 1.40
2435 3004 8.153550 CAGACCTCTGTAATGAGCCTATTTAAT 58.846 37.037 0.00 0.00 39.09 1.40
2436 3005 7.419057 CCAGACCTCTGTAATGAGCCTATTTAA 60.419 40.741 1.69 0.00 42.27 1.52
2437 3006 6.042093 CCAGACCTCTGTAATGAGCCTATTTA 59.958 42.308 1.69 0.00 42.27 1.40
2438 3007 5.163258 CCAGACCTCTGTAATGAGCCTATTT 60.163 44.000 1.69 0.00 42.27 1.40
2440 3009 3.900601 CCAGACCTCTGTAATGAGCCTAT 59.099 47.826 1.69 0.00 42.27 2.57
2441 3010 3.300388 CCAGACCTCTGTAATGAGCCTA 58.700 50.000 1.69 0.00 42.27 3.93
2442 3011 2.114616 CCAGACCTCTGTAATGAGCCT 58.885 52.381 1.69 0.00 42.27 4.58
2443 3012 1.139853 CCCAGACCTCTGTAATGAGCC 59.860 57.143 1.69 0.00 42.27 4.70
2444 3013 1.474143 GCCCAGACCTCTGTAATGAGC 60.474 57.143 1.69 0.00 42.27 4.26
2445 3014 1.833630 TGCCCAGACCTCTGTAATGAG 59.166 52.381 1.69 0.00 42.27 2.90
2446 3015 1.555075 GTGCCCAGACCTCTGTAATGA 59.445 52.381 1.69 0.00 42.27 2.57
2447 3016 1.278985 TGTGCCCAGACCTCTGTAATG 59.721 52.381 1.69 0.00 42.27 1.90
2448 3017 1.279271 GTGTGCCCAGACCTCTGTAAT 59.721 52.381 1.69 0.00 42.27 1.89
2449 3018 0.685097 GTGTGCCCAGACCTCTGTAA 59.315 55.000 1.69 0.00 42.27 2.41
2450 3019 0.471022 TGTGTGCCCAGACCTCTGTA 60.471 55.000 1.69 0.00 42.27 2.74
2451 3020 1.344953 TTGTGTGCCCAGACCTCTGT 61.345 55.000 1.69 0.00 42.27 3.41
2452 3021 0.604780 CTTGTGTGCCCAGACCTCTG 60.605 60.000 0.00 0.00 43.40 3.35
2453 3022 0.764369 TCTTGTGTGCCCAGACCTCT 60.764 55.000 0.00 0.00 0.00 3.69
2454 3023 0.326264 ATCTTGTGTGCCCAGACCTC 59.674 55.000 0.00 0.00 0.00 3.85
2455 3024 0.037303 CATCTTGTGTGCCCAGACCT 59.963 55.000 0.00 0.00 0.00 3.85
2456 3025 0.036732 TCATCTTGTGTGCCCAGACC 59.963 55.000 0.00 0.00 0.00 3.85
2457 3026 1.808945 CTTCATCTTGTGTGCCCAGAC 59.191 52.381 0.00 0.00 0.00 3.51
2458 3027 1.421268 ACTTCATCTTGTGTGCCCAGA 59.579 47.619 0.00 0.00 0.00 3.86
2459 3028 1.901591 ACTTCATCTTGTGTGCCCAG 58.098 50.000 0.00 0.00 0.00 4.45
2460 3029 2.158623 AGAACTTCATCTTGTGTGCCCA 60.159 45.455 0.00 0.00 0.00 5.36
2461 3030 2.485814 GAGAACTTCATCTTGTGTGCCC 59.514 50.000 0.00 0.00 0.00 5.36
2462 3031 3.141398 TGAGAACTTCATCTTGTGTGCC 58.859 45.455 0.00 0.00 0.00 5.01
2463 3032 5.368256 AATGAGAACTTCATCTTGTGTGC 57.632 39.130 0.00 0.00 45.82 4.57
2492 3061 9.410556 CAAACACCTTCCTCAAGTTATTAATTG 57.589 33.333 0.00 0.00 0.00 2.32
2501 3070 2.654863 CACCAAACACCTTCCTCAAGT 58.345 47.619 0.00 0.00 0.00 3.16
2525 3094 5.578727 GCTATACTCCCTAGAAATGCAATCG 59.421 44.000 0.00 0.00 0.00 3.34
2539 3108 5.065914 TGAATGCTCATTTGCTATACTCCC 58.934 41.667 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.