>input_sequence_74672
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-ATGGGGAACCTGATCTCGGCGGGCGCGGCGGCGGGCGCGAGCGGAGGGAAGGTGGTGATGGCGGACGGGAGCGTGCGGG
CGCTCAGCGAGCCCGTGTCCGTGGCGGAGCTCATGATGGACCACCCGCGCCACTTCGTCGTCGACGCGCGCCTGCTGCAG
CAGCGGAAGGGCGCCGCAG---CCG------GCGGGGCCAGCAAGGTCGCGCCGCTGCCGGCCGACCACGTGCTGGGCGC
GGGCGGCGTCTACGTCCTGCTGCCGGCCACCCGCGGCAAGGTGTCCGCCGAGGAGGCGCGGCGCGTGCTCACGGCGTCGC
GGTCGCTGGCGCGCTCCAGGTCAATGCCGGGCGGGCTGCGGAGGAAGCTCTCGTCCAGGAAGAGCCGGGAAGCCGACGAC
GCCGATAGGTCGGCAAAGAACGAGGCGGCGGCGGCGGCTGT---GGCAGAAATGGAGAGGAGGGAGGAGGCGGCGGCGAC
GGCGGACGGGTTCGAGGAGCACCGGCCGGAGTTCTTGAGCCGGGAGCTGTCGTGCCGGGGGTGGAAGCCGAGCCTGAACA
CCATCGAAGAGCGTGTCATTCCCAAGAAGGTGTCCCATTGGCTCTTCTGA------------------------------
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>chr4A_1_TraesCS4A01G119300
ATGAACAATGCAATGCGAAACCCAAACCAACAAGCAGGGGAGAGGCCCCGGTTCATCAGACGCGGGCAGGAAGACGCGCT
TGTGATTATTCTAGGGCTACTAGCTAGCCGGCCAACTAATGCTGTG---CAACAACAGTAGTAGTGCTATAACGGAGACT
TGGATTCTGTTCCAAGCTAGCTACCGATCTCACGAGGAATGGAGGAGCACGCAGC-----GGCCGGCCGGCCGGAGCGCG
AAATGGTCGCACGTCGCCTTCGGTCGGAGCTGAGACAAAAAGTACGCATACATACATCTATCCAGCCCGACCCAACTCGA
TCATCACCACACACCA---CACACCACACCGGTAGTCGCCAACCAAATCACCCATTCTCGACTCTATTTCTTTCTACTGT
AGTTTTCCCCC------------------------------------------------------------CCTCTCTTT
TCTCCTAGTACCATAAACCCTTTCCCTGATACTTACGCTTGGAAGCCTCGCGTACACACGCTGCAGCCAGCCAATTCCCG
TTCTCCAGAATCTTCAAAAAGAATTACATCATTGTCCAAAATCTTCATGATCGTCAGGAACGTTCCAAAGAATTTATTGT
TAGGTTGTGTAGTACTCCTGCGACGATTTTGTCCCAAAGTTGAGTGCGTTCACAAGAGAACGGTACGTCGCACGGCACGG
AGAAAAACAAGTCGAAGCGGGCGTGACGGTGCAGCGCGTCAAGTACGAGTCAACGCGCCAACGACCTCACTTTCACGGGG
------ACGGGGGAGAGGAGCAGCTCGGTTTCAAACCCAACCCGCCATTTCTTGGCTTCTTCTTCTCTGCTTGCCCGGCC
AACCTAAACCCCCTCCACACTTTTTTATAA----------------------------CCTATGACCGACCTCAAAGTTT
ACCAGGAAGCATTCGCTCCCATCCC---------------ACCCCACCGTTTTAATACCACCCTCCGTCCCAACCATCCC
TCCTCCCACCGCGCCATTAGCAGAGCTTAACCCATTGCCGATCGAGCAGGCAGATATCGTGTGTGCATAGCGAG-AGCGG
CATGGGGAACCTGATCTCGGCGGGCGCGGCGGCGGGCGCGAGCGGAGGGAAGGTGGTGATGGCGGACGGGAGCGTGCGGG
CGCTCAGCGAGCCCGTGTCCGTGGCGGAGCTCATGATGGACCACCCGCGCCACTTCGTCGTCGACGCGCGCCTGCTGCAG
CAGCGGAAGGGC------G---CCGCAGCCGGCGGGGCCAGCAAGGTCGCGCCGCTGCCGGCCGACCACGTGCTGGGCGC
GGGCGGCGTCTACGTCCTGCTGCCGGCCACCCGCGGCAAGGTGTCCGCCGAGGAGGCGCGGCGCGTGCTCACGGCGTCGC
GGTCGCTGGCGCGCTCCAGGTCAATGCCGGGCGGGCTGCGGAGGAAGCTCTCGTCCAGGAAGAGCCGGGAAGCCGACGAC
GCCGATAGGTCGGCAAAGAACGAGGCGGCGGCGGCGGCTGT---GGCAGAAATGGAGAGGAGGGAGGAGGCGGCGGCGAC
GGCGGACGGGTTCGAGGAGCACCGGCCGGAGTTCTTGAGCCGGGAGCTGTCGTGCCGGGGGTGGAAGCCGAGCCTGAACA
CCATCGAAGAGCGTGTCATTCCCAAGAAGGTGTCCCATTGGCTCTTCTGAATTTCTTTCCGATGGATGACCAGACAAGGT
GAGCCGACTAGTAGGCTTCTTTGACTTGTCATCAGGATCTAGTCTCTTCTTCCTTG--CTTCCTTTTCTTTTTCTTCGTT
CAAATGCTTGTTCTGTCAACTGCATGTGTT---------------------------------TGCATGTGATGAGATAG
TGCAAGTGAAATTAAGCCCCCGTGTAACTATAAGATTGATTAGTTGGATGGTTGAGCGCTGTGGATCAATATGGAAATTA
ATCGAATTGCAATGAAATCGTAATCTCAGGTCATGGTTCCTGAATTGTGATTCTCCGGCCTTATT---------------
-CAATAAATTGCTACAGATTGAAACAAAAAAAAAGCTACGGATACACTAAAT----------------------------
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--------------------------------TAGATAAAATGACACTAAGAGGGGAGTCAACGTGCCATTTCTGGTGCC
ATGCGAACGATCGAGTGAGTAACAAAAGTATTTCTCCTGACCCACATGTAAGTGACATAGGCGGCGAGGGGTAAAAATAT
CCAAATAACGTTTCGGAGACAAAAAAAATATGGTACGCAATTTGCGTACTCTCAAAAAAAAAAGTTTCAGAGACAGTCAA
ACTCCTTTGCTTGGACGAAAACAGCATAGAGAGGAGTATTTTCATAAGCGCACTAGACAGAAGAGAGGCAAAATTGAACA
CATGATATTTTTAGAGGCAAAGATGAGAGTGGGCGCAAATTAGGGAAAGAATGGAATTGTCCCTAAAGATTTTCAGCATG
CAAATTTCATCATAAGTGTTGCTAGTGCGTTGTCCAAACAGAATGATGAGTTGCTAGCAAATCA----GCTGAAATTGCA
TGCGATGTTGAATTGGGTGAGCTTGATACAGGGAAAGGGGCAAATTAAATAGGCTCATTACAGAGGTCTGGGCACACAAG
ATGAAGTTCTCATTTCAAGTCAATTAATAACTTGAGGAAGGTGTTTGGTGCTACGATTGCATTTCTAGGGAGTATAGCAA
ATGAGCATTCAGTCACACTGATATTCTCGTGGAGACGAAGTGGGC
>chr4D_8
-------ATGCAATGCAAAACCCAAACAAA----CAGGGGAGAGGCCCCGCTTCATCAGACGCGGGCAGGAACACGCGCT
TGGGATTATTCTAGGGCTACTAGC----CGGCCAACTAACGCTGTAGTACAACAACAGTAGTAGTGCTATAACGGAGACT
TGGATTCTGTTCCAAGCTAGCTACCGATCTCACGGGGAATGGACGAGCACGCAGC-----AGCCGGCCGGCCGGAGCGGG
AAATGGTCGCACGTCGCATTCGGTCGGAGCTGAGACAAAAAGTACGCATACATACATCTATCCAGCCCGACCCAACTCGA
TCAT-ACCACGCACCACACCACACCACACCGGTAGTCGCCAACCAAATCACCCATTGTCGACTCCAACTTGGGAGTAATG
TATGTAATTCATAATCCGCTAGTCAATTTC------------------------------------------------TT
TCTCCTA---CCACAAACCCTTTCCCTGATACTTACGCTTGGAAGCCTCGCGTACACACCCTG----CAGCCAACTCCCG
TTCCCCAGAATCTTCATTTTTT-TTACATCATTGTCCACAATCTTCATGATCGTTAGGAACGTTCCAAAGAATTTATTGT
TAGGTTGTGTAGTACTCCGGCGACGATTTTGTCCCAAAGTTGAGTGCGTTCACAAGAGAACGGTACGTCGCACGGCACGG
CGAAAAACAAGTCGAAGCGGCCCTGACGGTGCAGCGCGTCAAGTACGAGTCAACGCGCCAACGACCTCACTTTCACGGGG
GAGAGGAGCAGCTGGG-------------TTCAAACCCAACCCGCCATTTCTTGGCTTCTTCTTCTCTTCTTGCCCGGCC
AACCTAAACCCCCTCCACACTTTTTTATAACCTAT--------------------------------GACCTCAAAGTTT
ACCAGGAAGCATTCGCTCCCGTCCC---------------AC-------------------CCTCCGTCCCAACCATCCT
CCCCCTCGCCGCGCCATTAGCAGTAAG---CCCATTGCCGATCGAGCAGGGAGATATCGTGTGTGCATAGCGAT-AGCGG
CATGGGGAACCTGATATCGGCGGGCGCGGCGGCGGGCGCGAGCGGACGGAAGGTGGTGATGGCGGACGGGAGCGTGCGGG
CGCTCAGCGAGCCCGTGTCCGTGGCGGAGCTCATGATGGACCACCCGCGCCACTTCGTCGTCGACGCGCGCCTGCTGCAG
CAGCGGAAGGGC------G---CCG------GCGGGGCCTGCAAGGTCGCGCCGCTGCCGGCCGACCACGTGCTGGGCGC
GGGCGGCGTGTACGTCCTGCTGCCGGCCACCCGCGGCAAGGTGTCCGCCGAGGAGGCGCGGCGCGTGCTCACGGCGTCGC
GGTCGCTGGCGCGCTCCCGGTCAATGCCGGGCGGGCTGAGGAGGAAGCTGTCGTCCAGGAAGAGCCGGGAAGCCGACGAC
GCCGATCGGTCGGCCAAGAACGA---------GGCGGCTGT---GGCAGAAATGGAGAGGAGGGAGGAGACGGCGGCGAC
GGCGGACGGGTTCGACGAGCACCGGCCGGAGTTCTTGAGCCGGGAGCTGTCCTGCAGGGGGTGGAAGCCGAGCCTAAACA
CCATCGAAGAGCGTGTCATTCCCAAGAAGGTGTCCCATTGGCTCTTCTGAATTTCT------------------------
-----------TAGGCTTCTTTGACTTGTCGTCGGGATCTAGTCTCTCCTTCCTTG--CTTCCTTTTCTTTTTCTTCGTT
CAAATGCTTGTTCTGTCAACTGCATGTGTAACGAAAATGCTCATTTGCTATACTTCATTCAAATGCATGTGATGAGATAG
TGCAAGTGAAATTAAGCCCCCGTGTAATTATAGGATTGATTAGTTGGATGGTTGAGCGCTGTGGATCGATATGGAAATTA
ATCGAATTGA--------------------TCATGGTTCCTGAATTGTGATGCTCCGGGCTTATTTTTAGTTCGCTGATG
ACAACAAATAGCTACGGATTGAAACAG-AAAAAAGCTACGCATACACTAAATCTCTACTACTTAAAAGAAATGTAAGGTT
CTCATTTCACCTTTCTTCTCACCATTCCTTCGTCCAACCTTTCATGTACCCTTTTCGTTTCAAAATAAGTGACTCAAGTT
TGTACTAACTGTGTATTAAAGCTAGTACAAAGTTGAGTCACTTAATTTGGGACGGAGGGAGTATATGATAATCAATCAGT
TTAATTTACTTACCTTCTAAATCAATTCCACTTTAATTTACTTATCAAATTTCTAATTAAAATATAAGGTAATTCACGAG
CAAAATTTGATAAACATTTATTTACACAATCGCATTATTATTGACAGGTAAATCACAAGCTAACGTACTAGAATATTTAT
ATCCCATTACAACGCACGGGCATTGTTCTAGTTAGATAAAATGACACTAATAGGTGAGTCAACATGACATTCCTGGTGCC
CTGCGAACGATCCACCGAGTAACAAAAGTAATTCTCCTGACCCACATGTGAGTGACATAGGCAATGAGGGGTAAAAATGT
CCACAGAATGCTTTGGAGAAG------------------------------------------------------GTCAA
ACCCCTTTGACTGGACAGAAACATCAT---GAAGGGTATTGCCATCAGCACACCAAACGGAAGAGGGGCAAAGTTGAACA
CATGATTTTTTTAGGGGTAAAGATGAGAGTGGGCGCAAATTAGGGAAAGAATGGAATTGTCCCTAAATATTTTCAGCATG
CAAATTTCACCATAAATGTTGTTAGTGCGTTGTCTAAACAGAATGATGAGTTGCTAGCAAATCAAGATGCTGAAATTGCA
TGCGGCGTTGAATTGGGTGAGCTTGATAAAGGGAAAGGGGCAGGGAGA------------------------CACACAAG
ATGGAGTTCTCACTTTAAGTTAATTAATAGCTTGAGGAAGGTGTTTGGTGCTATGATTGCATTTCTACGGAGTATAGCAA
ATGAGCATTCAGTCACACCGATATTCTCATGGAGATGAACTGGGC
>chr4B_125
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--------------------------------------------TG---CAACAAC---AGTAGTGCTATAACGGAGACT
TGGATTCTGTTCCAAGCTAGCTACCGATCTCATGAGGAATGAACGAGCACGCAGCGCAGCAGCCGGCCGGCCGGAGCGCG
AAATGGTCGCACGTCGTATTCGGTCGGAGCTGAGACAAAAAGTACGCATACATACATCTAT-CAGCCCGACCCAACTCGA
TCATCACCACGCACCA---CACCACACCAC-----------ACCACACCACCCATTCTCGAGTCTATTTCTTTCTATTAT
ACTCCTTCTATACAGAAATATAAGGGCGTTTAAATCACTATTTATTTCTTTAAAGATGAAGTAGTTTTTTTCCTCTCTTT
TCTCCTA---CCATAAACCCTTTCCCTGATACTTACGCTTGGAAGCCTCGCGTACACACCCTG----CGGCCAACTCCCG
TTCCCCAGAATCTTCATTTTTT-T-ACATCATTGTCCAAAATCTTCATGATCGTTAGGAACGTTCCAAAGAATTTATTGT
TAGGCTGTGTACTCCGTCGACAATTTTTTTGTCCCAAAGTTAAATGCGTTCACAAGAGAACGGTACGTCGCACGGCACGG
CGAAAAACAAGTCGAAGCGAGCGTGACGGTGCAGCGCGTCAAATACGAGTCAACGCGCCAACGACCTCACTTTCACGGGG
------AGCAGCTGGG-------------TTCAAACCCAACCCGCCATTTCTTGGCTTCTTCTTCTCTTCTTGCCCGGCC
AACCTAAACCCCCTCCACACTTTT--ATAACCTATCGTCCGTGGTGCTTCCATTCTCGCCTATGACCGACCTCAAAGTTT
ACCAGCAAGCATTCGCTCCTATCCCACCCACCGTTTTAATAC-------------------CCTCCGTCCCAACCA----
-----------CGCCATTAGCAGCAAG---CCCATTGCCGATCGAGCAGGCAGATATCGTGTGTGCATAGCGGGCAGCGG
CATGGGGAGCCTGATCTCGGCGGGCGCGGCGGCGGGCGCGAGCGGAGGGAAGGTGGTGATGGCGGACGGGAGCGTGCGGG
CGCTCAGCGAGCCCGTGTCCGTGGCGGAGCTCATGATGGACCACCCGCGCCACTTCGTCGTCGACGCGCGCCTGCTGCAG
CAGCGGAAGGGC------GGCGCCG------GCGGGGCCAGCAAGGTCGCGCCGCTGCCGGCCGACCACGTGCTGGGCGC
GGGCGGCGTGTACGTCCTGCTGCCGGCCACCCGCGGCAAGGTGTCCGCCGAGGAGGCGCGGCGCGTGCTCACGGCGTCCC
GGTCGCTGGCACGGTCCAGGTCAATGCCGGGCGGGCTGAGGAGGAAGCTGTCGTCCAGGAAGAGCCGGGAAGCCGACGAC
GCCGATCGGTCGGCCAAGAACGA---------GGCGGCGGCGGCGGCAGAAATGGAGAGGAGGGAGGAGACGGCCGCGAC
GGCGGACGGGTTCGAGGAGCACCGGCCGGAGTTCTTGAGCCGGGAGCTGTCGTGCCGGGGGTGGAAGCCGAGCCTAAACA
CCATCGAAGAGCGTGTCATTCCCAAGAAGGTGTCCCATTGGCTCTTCTGAATTTCTTTCCGATGGATGACGAGACAAGGT
GAGCCGA---GTAGGCTTCTTTGACTTGTCATCAGGATCTAGTCTCTTCTTCCTTTTCCTTCCTTTTCTTTTTCTTCGTT
CAAATGCTTCTTCTGTCAACTGCATGTGT---------------------------------------------------
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>SNPs
SSSSSSS---------S----------S--SSSS----------------S---------------------S-------
--S---------------------SSSS-----------S----------------------------------------
-------------------------------------------S----------------S-------------------
-----------------S--------------------------------------------------------------
----------S-----------------------------------------------------------------S-S-
-S-S--S-S-S---------------------------------------------------------------------
-------SSS-------------------------------------------------S---SSSS-------S-----
---S------------SSSSSSS-------------------------------S-------------------------
------------------S-------------------------------------------------------------
S-------------------------------------------------------------------------------
-------SSS-SSS-SSSSSSSSSSSSSS---------------------------------------S-----------
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------------------------------------------SSSSSSSSSSSSSSSSSSS------------------S
S--S-S-S---------------SSSSSSS--------------------------------------------------
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-------------------------SSSSSS-------------------------------------------------
---------S----------------------------------------------------------------------
--------------------------------------S----------S------------------------------
------S-------S--------SSSSSSSSS-------------------------------------S----------
---------------------------------------------------------------------------S----
----------------------------------------------------------------------S---------
-------SSS----------------------------------------------------------------------
-----------------------------S--------------------------------------------------
---------------------------S----S----------------------------------S------------
---------SSSSSSSSSSSSSSSSSSSSS---------------------S------S---------------------
----S----S-----S----------SS------------S---------------------------------------
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--------------------------------------------------S---S--------S--S----S--------
S-----------S-SS--------------S------------------S------------SSS-------------S-
---S-S--S-S--S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
--S------SS-----SS-----S---SSS--S-S-----SS---S---S---S-S--S------S------S-------
------S-------S--S-------------------------------------------------S------------
---------S-----S-----S------------S---------------------------------------------
----SS----------------------S-------------SSSSS-SSSSSSSSSSSSSSSSSSSSSSSS--------
---S--------S--S----S--------S-----------------------S-------------S------------
------------------S---------S------S---S-----
>forward_1014
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----------------------------------CATCCCACCCCACCGTTTTA--------------------------
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>reverse_2815
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--------------AGGCAAAGATGAGAGTGGGC----------------------------------------------
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