Multiple sequence alignment - TraesCS4A01G119000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G119000 chr4A 100.000 4556 0 0 1 4556 147022529 147017974 0.000000e+00 8414
1 TraesCS4A01G119000 chr4A 98.758 161 2 0 1 161 487973468 487973628 2.070000e-73 287
2 TraesCS4A01G119000 chr4D 86.609 1979 119 50 834 2712 324443460 324445392 0.000000e+00 2052
3 TraesCS4A01G119000 chr4D 87.830 1627 90 48 2774 4373 324445593 324447138 0.000000e+00 1808
4 TraesCS4A01G119000 chr4D 95.782 403 16 1 382 783 324442959 324443361 0.000000e+00 649
5 TraesCS4A01G119000 chr4D 87.554 233 26 3 160 390 324442704 324442935 2.700000e-67 267
6 TraesCS4A01G119000 chr4D 94.215 121 7 0 4436 4556 256541319 256541199 7.780000e-43 185
7 TraesCS4A01G119000 chr4D 94.215 121 7 0 4436 4556 442405226 442405346 7.780000e-43 185
8 TraesCS4A01G119000 chr4B 88.231 1521 108 37 2830 4319 404848277 404849757 0.000000e+00 1751
9 TraesCS4A01G119000 chr4B 92.234 940 43 14 836 1750 404845290 404846224 0.000000e+00 1304
10 TraesCS4A01G119000 chr4B 86.965 1051 57 23 1805 2836 404846339 404847328 0.000000e+00 1109
11 TraesCS4A01G119000 chr4B 88.490 669 53 6 160 824 404843222 404843870 0.000000e+00 787
12 TraesCS4A01G119000 chr7B 97.647 170 3 1 1 169 199569391 199569560 1.600000e-74 291
13 TraesCS4A01G119000 chr3A 99.375 160 1 0 1 160 71525445 71525604 1.600000e-74 291
14 TraesCS4A01G119000 chr6A 98.765 162 2 0 1 162 535997558 535997397 5.770000e-74 289
15 TraesCS4A01G119000 chr5B 98.758 161 2 0 1 161 166527782 166527942 2.070000e-73 287
16 TraesCS4A01G119000 chr5A 98.758 161 2 0 1 161 493649234 493649394 2.070000e-73 287
17 TraesCS4A01G119000 chr5A 98.758 161 2 0 1 161 682439907 682440067 2.070000e-73 287
18 TraesCS4A01G119000 chr5A 96.591 88 3 0 332 419 535763404 535763491 3.670000e-31 147
19 TraesCS4A01G119000 chr3B 98.758 161 2 0 1 161 590645430 590645590 2.070000e-73 287
20 TraesCS4A01G119000 chr1B 98.758 161 2 0 1 161 132866148 132866308 2.070000e-73 287
21 TraesCS4A01G119000 chr2D 95.041 121 6 0 4436 4556 181443357 181443237 1.670000e-44 191
22 TraesCS4A01G119000 chr3D 94.262 122 7 0 4435 4556 8072517 8072638 2.160000e-43 187
23 TraesCS4A01G119000 chr7D 94.215 121 7 0 4436 4556 602688627 602688507 7.780000e-43 185
24 TraesCS4A01G119000 chr6D 94.215 121 7 0 4436 4556 99572718 99572838 7.780000e-43 185
25 TraesCS4A01G119000 chr1D 94.215 121 7 0 4436 4556 372658583 372658703 7.780000e-43 185
26 TraesCS4A01G119000 chr1D 94.215 121 7 0 4436 4556 372709130 372709250 7.780000e-43 185
27 TraesCS4A01G119000 chr6B 93.443 122 8 0 4435 4556 84936143 84936264 1.010000e-41 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G119000 chr4A 147017974 147022529 4555 True 8414.00 8414 100.00000 1 4556 1 chr4A.!!$R1 4555
1 TraesCS4A01G119000 chr4D 324442704 324447138 4434 False 1194.00 2052 89.44375 160 4373 4 chr4D.!!$F2 4213
2 TraesCS4A01G119000 chr4B 404843222 404849757 6535 False 1237.75 1751 88.98000 160 4319 4 chr4B.!!$F1 4159

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
944 2408 0.029300 CGTTGTGCACCAGGTCTTTG 59.971 55.0 15.69 0.0 0.0 2.77 F
1692 3205 0.320421 TGCAGAGTAAGCCCGTCAAC 60.320 55.0 0.00 0.0 0.0 3.18 F
2217 3813 0.030638 AACAAAGGTGATGTGCGTGC 59.969 50.0 0.00 0.0 0.0 5.34 F
2820 4576 0.249657 CCTGAGCAGACGGATAAGCC 60.250 60.0 0.00 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1956 3530 0.184933 AGGTTTGCTAAGTGGGTGCA 59.815 50.0 0.0 0.0 34.69 4.57 R
2836 5547 0.599204 TGGACGGACGCAAGAAAGAC 60.599 55.0 0.0 0.0 43.62 3.01 R
3166 5911 1.028330 CGCTCATGGTCCTGCATTGT 61.028 55.0 0.0 0.0 0.00 2.71 R
4379 7161 0.105964 TCTTGTGTTGTGGGACGGAG 59.894 55.0 0.0 0.0 0.00 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.932699 TTATGTTCGAAAACTTTTATCGTTTGA 57.067 25.926 0.00 0.00 37.79 2.69
41 42 7.653523 TGTTCGAAAACTTTTATCGTTTGAC 57.346 32.000 0.00 0.00 37.79 3.18
42 43 7.465989 TGTTCGAAAACTTTTATCGTTTGACT 58.534 30.769 0.00 0.00 37.79 3.41
43 44 7.964011 TGTTCGAAAACTTTTATCGTTTGACTT 59.036 29.630 0.00 0.00 37.79 3.01
44 45 8.791605 GTTCGAAAACTTTTATCGTTTGACTTT 58.208 29.630 0.00 0.00 37.79 2.66
45 46 9.985318 TTCGAAAACTTTTATCGTTTGACTTTA 57.015 25.926 0.00 0.00 37.79 1.85
46 47 9.985318 TCGAAAACTTTTATCGTTTGACTTTAA 57.015 25.926 0.00 0.00 37.79 1.52
73 74 9.502145 TTCAAATTTGAATTCGAATAGGATTCG 57.498 29.630 26.01 13.97 41.88 3.34
74 75 8.888716 TCAAATTTGAATTCGAATAGGATTCGA 58.111 29.630 18.45 17.77 40.43 3.71
83 84 5.268544 TCGAATAGGATTCGAACTAACACG 58.731 41.667 19.01 6.64 46.35 4.49
84 85 5.065090 TCGAATAGGATTCGAACTAACACGA 59.935 40.000 19.01 8.63 46.35 4.35
85 86 5.395778 CGAATAGGATTCGAACTAACACGAG 59.604 44.000 14.81 0.00 43.97 4.18
86 87 3.505464 AGGATTCGAACTAACACGAGG 57.495 47.619 0.00 0.00 39.59 4.63
87 88 2.824341 AGGATTCGAACTAACACGAGGT 59.176 45.455 0.00 0.00 39.59 3.85
88 89 3.257624 AGGATTCGAACTAACACGAGGTT 59.742 43.478 0.00 0.00 43.62 3.50
89 90 4.460382 AGGATTCGAACTAACACGAGGTTA 59.540 41.667 0.00 0.00 40.96 2.85
97 98 2.614829 AACACGAGGTTAGCAACAGT 57.385 45.000 0.00 0.00 38.15 3.55
98 99 3.738830 AACACGAGGTTAGCAACAGTA 57.261 42.857 0.00 0.00 38.15 2.74
99 100 3.738830 ACACGAGGTTAGCAACAGTAA 57.261 42.857 0.00 0.00 0.00 2.24
100 101 3.387397 ACACGAGGTTAGCAACAGTAAC 58.613 45.455 0.00 0.00 0.00 2.50
101 102 2.735134 CACGAGGTTAGCAACAGTAACC 59.265 50.000 4.11 4.11 46.85 2.85
105 106 2.344025 GGTTAGCAACAGTAACCGAGG 58.656 52.381 0.00 0.00 40.00 4.63
106 107 2.289257 GGTTAGCAACAGTAACCGAGGT 60.289 50.000 0.00 0.00 40.00 3.85
107 108 2.735134 GTTAGCAACAGTAACCGAGGTG 59.265 50.000 0.00 0.00 0.00 4.00
108 109 1.045407 AGCAACAGTAACCGAGGTGA 58.955 50.000 0.00 0.00 0.00 4.02
109 110 1.145803 GCAACAGTAACCGAGGTGAC 58.854 55.000 1.38 1.38 0.00 3.67
110 111 1.415374 CAACAGTAACCGAGGTGACG 58.585 55.000 4.20 2.83 34.72 4.35
111 112 1.035139 AACAGTAACCGAGGTGACGT 58.965 50.000 4.20 0.00 34.72 4.34
112 113 0.313043 ACAGTAACCGAGGTGACGTG 59.687 55.000 0.00 6.04 34.72 4.49
113 114 0.388134 CAGTAACCGAGGTGACGTGG 60.388 60.000 0.00 0.00 34.72 4.94
114 115 1.735559 GTAACCGAGGTGACGTGGC 60.736 63.158 0.00 0.00 33.35 5.01
115 116 2.201708 TAACCGAGGTGACGTGGCA 61.202 57.895 0.00 0.00 33.35 4.92
116 117 1.537814 TAACCGAGGTGACGTGGCAT 61.538 55.000 0.00 0.00 33.35 4.40
117 118 2.509336 CCGAGGTGACGTGGCATC 60.509 66.667 0.00 0.00 0.00 3.91
118 119 2.880879 CGAGGTGACGTGGCATCG 60.881 66.667 0.00 0.00 32.86 3.84
119 120 2.261671 GAGGTGACGTGGCATCGT 59.738 61.111 13.44 13.44 46.88 3.73
120 121 1.374252 GAGGTGACGTGGCATCGTT 60.374 57.895 14.43 1.55 44.21 3.85
121 122 0.108992 GAGGTGACGTGGCATCGTTA 60.109 55.000 14.43 9.12 44.21 3.18
122 123 0.319083 AGGTGACGTGGCATCGTTAA 59.681 50.000 14.43 5.94 44.21 2.01
123 124 0.441145 GGTGACGTGGCATCGTTAAC 59.559 55.000 14.43 14.56 44.21 2.01
124 125 0.092351 GTGACGTGGCATCGTTAACG 59.908 55.000 21.85 21.85 44.21 3.18
125 126 1.058284 GACGTGGCATCGTTAACGC 59.942 57.895 22.96 9.19 44.21 4.84
126 127 2.019476 CGTGGCATCGTTAACGCG 59.981 61.111 22.96 16.57 39.60 6.01
127 128 2.398036 GTGGCATCGTTAACGCGG 59.602 61.111 22.96 17.06 39.60 6.46
128 129 2.816083 TGGCATCGTTAACGCGGG 60.816 61.111 22.96 14.69 39.60 6.13
129 130 2.509786 GGCATCGTTAACGCGGGA 60.510 61.111 22.96 6.35 39.60 5.14
130 131 1.885850 GGCATCGTTAACGCGGGAT 60.886 57.895 22.96 8.55 39.60 3.85
131 132 1.433837 GGCATCGTTAACGCGGGATT 61.434 55.000 22.96 0.00 39.60 3.01
132 133 1.210870 GCATCGTTAACGCGGGATTA 58.789 50.000 22.96 4.40 39.60 1.75
133 134 1.071041 GCATCGTTAACGCGGGATTAC 60.071 52.381 22.96 0.00 39.60 1.89
134 135 2.466846 CATCGTTAACGCGGGATTACT 58.533 47.619 22.96 0.00 39.60 2.24
135 136 1.912001 TCGTTAACGCGGGATTACTG 58.088 50.000 22.96 0.00 39.60 2.74
136 137 1.202114 TCGTTAACGCGGGATTACTGT 59.798 47.619 22.96 0.00 39.60 3.55
137 138 2.421775 TCGTTAACGCGGGATTACTGTA 59.578 45.455 22.96 0.00 39.60 2.74
138 139 2.785477 CGTTAACGCGGGATTACTGTAG 59.215 50.000 16.05 0.00 0.00 2.74
139 140 3.731867 CGTTAACGCGGGATTACTGTAGT 60.732 47.826 16.05 0.00 0.00 2.73
140 141 2.573941 AACGCGGGATTACTGTAGTC 57.426 50.000 12.47 2.01 0.00 2.59
141 142 1.760192 ACGCGGGATTACTGTAGTCT 58.240 50.000 12.47 0.00 0.00 3.24
142 143 2.923121 ACGCGGGATTACTGTAGTCTA 58.077 47.619 12.47 0.00 0.00 2.59
143 144 3.282021 ACGCGGGATTACTGTAGTCTAA 58.718 45.455 12.47 0.00 0.00 2.10
144 145 3.887716 ACGCGGGATTACTGTAGTCTAAT 59.112 43.478 12.47 0.00 0.00 1.73
145 146 4.340381 ACGCGGGATTACTGTAGTCTAATT 59.660 41.667 12.47 0.00 0.00 1.40
146 147 5.532406 ACGCGGGATTACTGTAGTCTAATTA 59.468 40.000 12.47 0.00 0.00 1.40
147 148 6.208204 ACGCGGGATTACTGTAGTCTAATTAT 59.792 38.462 12.47 0.00 0.00 1.28
148 149 6.746364 CGCGGGATTACTGTAGTCTAATTATC 59.254 42.308 9.73 0.00 0.00 1.75
149 150 7.034397 GCGGGATTACTGTAGTCTAATTATCC 58.966 42.308 9.73 6.38 0.00 2.59
150 151 7.249147 CGGGATTACTGTAGTCTAATTATCCG 58.751 42.308 9.73 8.35 31.87 4.18
151 152 7.545489 GGGATTACTGTAGTCTAATTATCCGG 58.455 42.308 9.73 0.00 31.87 5.14
152 153 7.363617 GGGATTACTGTAGTCTAATTATCCGGG 60.364 44.444 0.00 0.00 31.87 5.73
153 154 4.868314 ACTGTAGTCTAATTATCCGGGC 57.132 45.455 0.00 0.00 0.00 6.13
154 155 3.255149 ACTGTAGTCTAATTATCCGGGCG 59.745 47.826 0.00 0.00 0.00 6.13
155 156 3.225104 TGTAGTCTAATTATCCGGGCGT 58.775 45.455 0.00 0.00 0.00 5.68
156 157 3.254166 TGTAGTCTAATTATCCGGGCGTC 59.746 47.826 0.00 0.00 0.00 5.19
157 158 2.313317 AGTCTAATTATCCGGGCGTCA 58.687 47.619 0.00 0.00 0.00 4.35
158 159 2.035576 AGTCTAATTATCCGGGCGTCAC 59.964 50.000 0.00 0.00 0.00 3.67
159 160 2.033372 TCTAATTATCCGGGCGTCACA 58.967 47.619 0.00 0.00 0.00 3.58
160 161 2.132762 CTAATTATCCGGGCGTCACAC 58.867 52.381 0.00 0.00 0.00 3.82
161 162 0.539986 AATTATCCGGGCGTCACACT 59.460 50.000 0.00 0.00 0.00 3.55
162 163 0.539986 ATTATCCGGGCGTCACACTT 59.460 50.000 0.00 0.00 0.00 3.16
163 164 0.322322 TTATCCGGGCGTCACACTTT 59.678 50.000 0.00 0.00 0.00 2.66
164 165 0.390603 TATCCGGGCGTCACACTTTG 60.391 55.000 0.00 0.00 0.00 2.77
165 166 4.025401 CCGGGCGTCACACTTTGC 62.025 66.667 0.00 0.00 0.00 3.68
166 167 2.972505 CGGGCGTCACACTTTGCT 60.973 61.111 0.00 0.00 0.00 3.91
167 168 2.946762 GGGCGTCACACTTTGCTC 59.053 61.111 0.00 0.00 0.00 4.26
173 174 1.146041 TCACACTTTGCTCGGCAGT 59.854 52.632 0.00 0.00 40.61 4.40
247 248 4.749310 AGCCGCCTCTTGCAGACG 62.749 66.667 0.00 0.00 41.33 4.18
270 273 0.684153 CATGGGCTTGATCCGGGTTT 60.684 55.000 0.00 0.00 0.00 3.27
319 322 5.425196 ACCCATCCAATTTCATTCCTTTG 57.575 39.130 0.00 0.00 0.00 2.77
334 337 7.394016 TCATTCCTTTGCAGATTAGAAGTGTA 58.606 34.615 0.00 0.00 0.00 2.90
351 354 6.767902 AGAAGTGTATGTTGCCAATGTATAGG 59.232 38.462 0.00 0.00 0.00 2.57
421 457 2.151202 CTAGAAGCTTTTTGGGACGCA 58.849 47.619 0.00 0.00 0.00 5.24
459 495 2.037144 TCCGCTAATTAGACCCACCTC 58.963 52.381 16.85 0.00 0.00 3.85
491 527 0.816018 ATTTTGCACGACGTGTCCCA 60.816 50.000 27.32 15.21 35.75 4.37
562 598 6.879993 TGTTTCTCGCCAAACCACTATTATTA 59.120 34.615 6.59 0.00 35.69 0.98
677 713 0.106708 ACACAGGCATCACACGAACT 59.893 50.000 0.00 0.00 0.00 3.01
712 748 2.416431 GCAGAAATTGAGGTCATGCCAC 60.416 50.000 8.58 3.42 40.61 5.01
737 774 6.564499 CGCAGCAAGCAAAGAAAATAAATGTT 60.564 34.615 0.00 0.00 46.13 2.71
849 2313 2.024941 TGTACCAGAGCAGAGAGGATGA 60.025 50.000 0.00 0.00 0.00 2.92
852 2316 1.619827 CCAGAGCAGAGAGGATGATCC 59.380 57.143 2.46 2.46 33.58 3.36
854 2318 0.602562 GAGCAGAGAGGATGATCCCG 59.397 60.000 8.08 0.00 37.19 5.14
873 2337 1.918609 CGCAGGCTAGTTAAACGAGAC 59.081 52.381 0.00 0.00 0.00 3.36
944 2408 0.029300 CGTTGTGCACCAGGTCTTTG 59.971 55.000 15.69 0.00 0.00 2.77
982 2446 4.143073 GCGACCTCTATATATATCGCCTCG 60.143 50.000 20.35 12.01 46.87 4.63
1000 2464 3.385384 CCCCTCTCTGCTCGCACA 61.385 66.667 0.00 0.00 0.00 4.57
1041 2508 1.290732 CCTCCTCCTCCTCCTCTTCTT 59.709 57.143 0.00 0.00 0.00 2.52
1042 2509 2.666317 CTCCTCCTCCTCCTCTTCTTC 58.334 57.143 0.00 0.00 0.00 2.87
1043 2510 2.244769 CTCCTCCTCCTCCTCTTCTTCT 59.755 54.545 0.00 0.00 0.00 2.85
1066 2533 2.374525 ACCCACACAGACACAGGCA 61.375 57.895 0.00 0.00 0.00 4.75
1169 2643 1.717937 CCAAAGCTTCTCGCCATCG 59.282 57.895 0.00 0.00 40.39 3.84
1217 2692 2.666619 GCCAAGCACTGAATCTTCAACG 60.667 50.000 0.00 0.00 36.64 4.10
1271 2749 0.684805 GAGAAGGAAGAGGAGCGGGA 60.685 60.000 0.00 0.00 0.00 5.14
1425 2905 3.516911 GGTAGTCTCCGACATCCCT 57.483 57.895 0.00 0.00 34.60 4.20
1434 2914 2.456119 CGACATCCCTGCGACTTGC 61.456 63.158 0.00 0.00 46.70 4.01
1515 3009 2.160721 TGGTAGAGAGATGGGTGGAC 57.839 55.000 0.00 0.00 0.00 4.02
1529 3023 3.579586 TGGGTGGACTGAGTAATACGTTT 59.420 43.478 0.00 0.00 0.00 3.60
1537 3031 9.961265 TGGACTGAGTAATACGTTTAGATATTG 57.039 33.333 0.00 0.00 0.00 1.90
1594 3088 3.139077 AGCTTGGGAGTTTCAACTAACG 58.861 45.455 0.00 0.00 39.88 3.18
1598 3092 3.280295 TGGGAGTTTCAACTAACGCAAA 58.720 40.909 0.00 0.00 39.88 3.68
1626 3139 6.382570 AGGAAGCTGTTCTCAGTCAGTATTAT 59.617 38.462 0.00 0.00 43.05 1.28
1627 3140 6.699642 GGAAGCTGTTCTCAGTCAGTATTATC 59.300 42.308 0.00 0.00 43.05 1.75
1628 3141 6.155475 AGCTGTTCTCAGTCAGTATTATCC 57.845 41.667 0.00 0.00 43.05 2.59
1650 3163 4.394712 GTGCCCTGTCCCTGTCCG 62.395 72.222 0.00 0.00 0.00 4.79
1669 3182 1.883275 CGGCCTACCTCTCTGACATAG 59.117 57.143 0.00 0.00 0.00 2.23
1692 3205 0.320421 TGCAGAGTAAGCCCGTCAAC 60.320 55.000 0.00 0.00 0.00 3.18
1735 3248 3.670625 GTGTCACCTGTTTGGCTATGTA 58.329 45.455 0.00 0.00 40.22 2.29
1792 3333 3.135712 TGGTTAGCTTGTCAGTTTCCTCA 59.864 43.478 0.00 0.00 0.00 3.86
1796 3337 4.899352 AGCTTGTCAGTTTCCTCATACT 57.101 40.909 0.00 0.00 0.00 2.12
1797 3338 7.321153 GTTAGCTTGTCAGTTTCCTCATACTA 58.679 38.462 0.00 0.00 0.00 1.82
1798 3339 6.360370 AGCTTGTCAGTTTCCTCATACTAA 57.640 37.500 0.00 0.00 0.00 2.24
1799 3340 6.769512 AGCTTGTCAGTTTCCTCATACTAAA 58.230 36.000 0.00 0.00 0.00 1.85
1822 3396 8.831715 AAAAAGTTATTTGGGTGCATCTTAAG 57.168 30.769 0.00 0.00 0.00 1.85
1848 3422 3.219052 ACTTGAGTGTACTAGAAGCGC 57.781 47.619 0.00 0.00 0.00 5.92
1858 3432 5.579511 GTGTACTAGAAGCGCTTTTAATCCA 59.420 40.000 25.84 14.83 0.00 3.41
1904 3478 0.933796 GCAAGTTCCTAGAGCGCATC 59.066 55.000 11.47 4.24 0.00 3.91
1905 3479 1.576356 CAAGTTCCTAGAGCGCATCC 58.424 55.000 11.47 0.00 0.00 3.51
1906 3480 0.466124 AAGTTCCTAGAGCGCATCCC 59.534 55.000 11.47 0.00 0.00 3.85
1907 3481 0.687757 AGTTCCTAGAGCGCATCCCA 60.688 55.000 11.47 0.00 0.00 4.37
1908 3482 0.394565 GTTCCTAGAGCGCATCCCAT 59.605 55.000 11.47 0.00 0.00 4.00
1909 3483 1.131638 TTCCTAGAGCGCATCCCATT 58.868 50.000 11.47 0.00 0.00 3.16
1910 3484 0.394192 TCCTAGAGCGCATCCCATTG 59.606 55.000 11.47 0.00 0.00 2.82
1956 3530 4.274147 TGAAGAAGACGCTCTTATCCTCT 58.726 43.478 1.08 0.00 36.73 3.69
1962 3536 0.249657 CGCTCTTATCCTCTGCACCC 60.250 60.000 0.00 0.00 0.00 4.61
1975 3549 0.184933 TGCACCCACTTAGCAAACCT 59.815 50.000 0.00 0.00 34.97 3.50
1991 3565 4.990257 CAAACCTGCAATGTCCTAATCTG 58.010 43.478 0.00 0.00 0.00 2.90
1992 3566 4.574674 AACCTGCAATGTCCTAATCTGA 57.425 40.909 0.00 0.00 0.00 3.27
1993 3567 4.148128 ACCTGCAATGTCCTAATCTGAG 57.852 45.455 0.00 0.00 0.00 3.35
2025 3604 1.940613 GATTCTGCACCATCGGTTACC 59.059 52.381 0.00 0.00 31.02 2.85
2035 3614 3.573558 CGGTTACCGCAAGTGCAT 58.426 55.556 11.93 0.00 41.17 3.96
2036 3615 1.423845 CGGTTACCGCAAGTGCATC 59.576 57.895 11.93 0.00 41.17 3.91
2037 3616 1.019278 CGGTTACCGCAAGTGCATCT 61.019 55.000 11.93 0.00 41.17 2.90
2038 3617 1.737696 CGGTTACCGCAAGTGCATCTA 60.738 52.381 11.93 0.00 41.17 1.98
2039 3618 2.561569 GGTTACCGCAAGTGCATCTAT 58.438 47.619 3.87 0.00 42.21 1.98
2040 3619 3.724374 GGTTACCGCAAGTGCATCTATA 58.276 45.455 3.87 0.00 42.21 1.31
2041 3620 3.741344 GGTTACCGCAAGTGCATCTATAG 59.259 47.826 3.87 0.00 42.21 1.31
2042 3621 2.533266 ACCGCAAGTGCATCTATAGG 57.467 50.000 3.87 0.00 42.21 2.57
2043 3622 1.762957 ACCGCAAGTGCATCTATAGGT 59.237 47.619 3.87 0.00 42.21 3.08
2044 3623 2.170607 ACCGCAAGTGCATCTATAGGTT 59.829 45.455 3.87 0.00 42.21 3.50
2045 3624 3.386726 ACCGCAAGTGCATCTATAGGTTA 59.613 43.478 3.87 0.00 42.21 2.85
2046 3625 3.741344 CCGCAAGTGCATCTATAGGTTAC 59.259 47.826 3.87 0.00 42.21 2.50
2052 3631 4.116961 GTGCATCTATAGGTTACGTGCAA 58.883 43.478 0.00 0.00 41.99 4.08
2116 3695 1.529826 GCTAACGACGTACCGTACCAG 60.530 57.143 0.00 2.94 41.37 4.00
2122 3701 1.153706 CGTACCGTACCAGCAAGGG 60.154 63.158 3.04 0.00 43.89 3.95
2217 3813 0.030638 AACAAAGGTGATGTGCGTGC 59.969 50.000 0.00 0.00 0.00 5.34
2282 3878 2.554142 CTGCTGTCACACTTTCACTGA 58.446 47.619 0.00 0.00 0.00 3.41
2511 4128 2.263540 GGACCCTTTGCGTCGCTA 59.736 61.111 19.50 8.24 0.00 4.26
2521 4138 2.353607 CGTCGCTATCGTGGGCTC 60.354 66.667 0.00 0.00 36.96 4.70
2526 4143 1.148157 CGCTATCGTGGGCTCTGTTG 61.148 60.000 0.00 0.00 0.00 3.33
2564 4181 4.606457 AGATCGCTCACATGTTTTTAGC 57.394 40.909 0.00 2.34 0.00 3.09
2580 4197 2.060004 TAGCGCCTTCTCGTGGATCG 62.060 60.000 2.29 0.00 41.41 3.69
2586 4203 2.669808 CTTCTCGTGGATCGGAGGCG 62.670 65.000 7.08 0.00 40.32 5.52
2611 4228 1.847999 CGTCGATTGCCATGATTTTGC 59.152 47.619 0.00 0.00 0.00 3.68
2615 4232 1.937899 GATTGCCATGATTTTGCTGCC 59.062 47.619 0.00 0.00 0.00 4.85
2618 4235 1.519898 CCATGATTTTGCTGCCGGC 60.520 57.895 22.73 22.73 42.22 6.13
2751 4368 1.451927 ATGGCTGGGTGCGTGTATG 60.452 57.895 0.00 0.00 44.05 2.39
2820 4576 0.249657 CCTGAGCAGACGGATAAGCC 60.250 60.000 0.00 0.00 0.00 4.35
2845 5556 1.265568 GCATGCATGCGTCTTTCTTG 58.734 50.000 33.99 3.34 44.67 3.02
2871 5582 2.060980 CCAGGGAAGCTAGCCGAGT 61.061 63.158 12.13 0.00 0.00 4.18
2943 5654 3.073735 AGGCCCTGTCTCTGCTCG 61.074 66.667 0.00 0.00 0.00 5.03
3000 5713 3.118261 AGTGTCTTGTTCTTCTTCAGGCA 60.118 43.478 0.00 0.00 0.00 4.75
3102 5831 2.048444 ATAGGCACTGTCAAGCATGG 57.952 50.000 0.00 0.00 41.52 3.66
3162 5907 2.093890 TGGTCTGGTTGCATGCTAATG 58.906 47.619 20.33 5.20 36.82 1.90
3244 5989 3.488489 GTCAGACAACACAACACAACAC 58.512 45.455 0.00 0.00 0.00 3.32
3245 5990 3.058570 GTCAGACAACACAACACAACACA 60.059 43.478 0.00 0.00 0.00 3.72
3246 5991 3.565902 TCAGACAACACAACACAACACAA 59.434 39.130 0.00 0.00 0.00 3.33
3247 5992 3.668191 CAGACAACACAACACAACACAAC 59.332 43.478 0.00 0.00 0.00 3.32
3248 5993 3.316588 AGACAACACAACACAACACAACA 59.683 39.130 0.00 0.00 0.00 3.33
3249 5994 4.045104 GACAACACAACACAACACAACAA 58.955 39.130 0.00 0.00 0.00 2.83
3250 5995 3.799420 ACAACACAACACAACACAACAAC 59.201 39.130 0.00 0.00 0.00 3.32
3251 5996 4.047822 CAACACAACACAACACAACAACT 58.952 39.130 0.00 0.00 0.00 3.16
3252 5997 4.314740 ACACAACACAACACAACAACTT 57.685 36.364 0.00 0.00 0.00 2.66
3253 5998 4.295051 ACACAACACAACACAACAACTTC 58.705 39.130 0.00 0.00 0.00 3.01
3254 5999 4.037446 ACACAACACAACACAACAACTTCT 59.963 37.500 0.00 0.00 0.00 2.85
3255 6000 4.616802 CACAACACAACACAACAACTTCTC 59.383 41.667 0.00 0.00 0.00 2.87
3256 6001 4.518970 ACAACACAACACAACAACTTCTCT 59.481 37.500 0.00 0.00 0.00 3.10
3257 6002 4.946784 ACACAACACAACAACTTCTCTC 57.053 40.909 0.00 0.00 0.00 3.20
3258 6003 4.323417 ACACAACACAACAACTTCTCTCA 58.677 39.130 0.00 0.00 0.00 3.27
3259 6004 4.154195 ACACAACACAACAACTTCTCTCAC 59.846 41.667 0.00 0.00 0.00 3.51
3260 6005 4.393062 CACAACACAACAACTTCTCTCACT 59.607 41.667 0.00 0.00 0.00 3.41
3261 6006 5.003804 ACAACACAACAACTTCTCTCACTT 58.996 37.500 0.00 0.00 0.00 3.16
3295 6040 7.764443 CAGCCATGAAAAATCTTCATTCAGAAT 59.236 33.333 0.00 0.00 37.06 2.40
3318 6063 3.620929 CATCTGACCATGCATGCTTAC 57.379 47.619 21.69 11.54 0.00 2.34
3600 6348 3.482786 CTCAAAGTCGCAGGATTTTTCG 58.517 45.455 0.00 0.00 30.60 3.46
3603 6351 1.453155 AGTCGCAGGATTTTTCGCAT 58.547 45.000 0.00 0.00 0.00 4.73
3649 6397 1.658409 GCTTCTTGTGGTGCGTTGC 60.658 57.895 0.00 0.00 0.00 4.17
3660 6408 2.904866 GCGTTGCAGGGGTCACAA 60.905 61.111 0.00 0.00 0.00 3.33
3738 6489 5.627499 TTAATGTTGTTTAGCTGCTCCTG 57.373 39.130 4.91 0.00 0.00 3.86
3747 6498 2.301577 AGCTGCTCCTGAATTCGTAC 57.698 50.000 0.00 0.00 0.00 3.67
3811 6567 3.056536 TGCCTCTATGTCTGTCACAAGTC 60.057 47.826 0.00 0.00 38.97 3.01
3977 6735 8.853469 AACTGAGAAACTAGTATGCGTTATAC 57.147 34.615 0.00 4.43 41.64 1.47
4016 6775 4.507756 TCATTGACTTGCTATATGTCGTGC 59.492 41.667 0.00 0.00 36.52 5.34
4019 6778 4.503910 TGACTTGCTATATGTCGTGCTTT 58.496 39.130 0.00 0.00 36.52 3.51
4087 6847 7.932120 ATGTGTCGCTAACTTGTAAGATATC 57.068 36.000 0.00 0.00 0.00 1.63
4112 6872 5.964168 CGTATACACTCCGAACTGAGTAAAG 59.036 44.000 3.32 0.00 43.63 1.85
4127 6887 8.019656 ACTGAGTAAAGATACCATCCGTATTT 57.980 34.615 0.00 0.00 37.81 1.40
4140 6900 6.921857 ACCATCCGTATTTGTATTCGAGTAAG 59.078 38.462 0.00 0.00 0.00 2.34
4153 6913 1.134788 CGAGTAAGATCCGCTTTGGGT 60.135 52.381 0.00 0.00 38.05 4.51
4166 6926 3.875134 CGCTTTGGGTTTCGTATCCTATT 59.125 43.478 0.00 0.00 0.00 1.73
4173 6933 5.012354 TGGGTTTCGTATCCTATTACATCCC 59.988 44.000 0.00 0.00 0.00 3.85
4176 6936 7.038799 GGGTTTCGTATCCTATTACATCCCTAA 60.039 40.741 0.00 0.00 0.00 2.69
4186 6946 4.829064 TTACATCCCTAATCGCATTTGC 57.171 40.909 0.00 0.00 37.78 3.68
4191 6951 3.879998 TCCCTAATCGCATTTGCAGTTA 58.120 40.909 3.13 0.76 42.21 2.24
4192 6952 4.265893 TCCCTAATCGCATTTGCAGTTAA 58.734 39.130 3.13 0.00 42.21 2.01
4193 6953 4.702612 TCCCTAATCGCATTTGCAGTTAAA 59.297 37.500 3.13 0.00 42.21 1.52
4194 6954 5.184096 TCCCTAATCGCATTTGCAGTTAAAA 59.816 36.000 3.13 0.00 42.21 1.52
4195 6955 5.866633 CCCTAATCGCATTTGCAGTTAAAAA 59.133 36.000 3.13 0.00 42.21 1.94
4196 6956 6.534793 CCCTAATCGCATTTGCAGTTAAAAAT 59.465 34.615 3.13 0.00 42.21 1.82
4197 6957 7.064490 CCCTAATCGCATTTGCAGTTAAAAATT 59.936 33.333 3.13 0.00 42.21 1.82
4222 6982 5.818136 AAAATAGAACACGTGCATATGCT 57.182 34.783 27.13 6.92 42.66 3.79
4223 6983 6.918892 AAAATAGAACACGTGCATATGCTA 57.081 33.333 27.13 11.93 42.66 3.49
4240 7000 4.193826 TGCTAGGCATTATCCGATCTTC 57.806 45.455 0.00 0.00 31.71 2.87
4241 7001 3.182967 GCTAGGCATTATCCGATCTTCG 58.817 50.000 0.00 0.00 40.07 3.79
4263 7027 6.913170 TCGGTGACTAATTCTACTTACGTTT 58.087 36.000 0.00 0.00 0.00 3.60
4293 7057 5.471456 GGAAAAATCTACCTCATGATGCGAT 59.529 40.000 0.00 0.00 0.00 4.58
4294 7058 6.016777 GGAAAAATCTACCTCATGATGCGATT 60.017 38.462 0.00 3.35 0.00 3.34
4298 7062 7.468141 AATCTACCTCATGATGCGATTAGTA 57.532 36.000 11.69 0.00 0.00 1.82
4301 7065 5.474578 ACCTCATGATGCGATTAGTATGT 57.525 39.130 0.00 0.00 0.00 2.29
4310 7074 7.213678 TGATGCGATTAGTATGTCCAAATACA 58.786 34.615 0.00 0.00 35.79 2.29
4312 7076 9.366216 GATGCGATTAGTATGTCCAAATACATA 57.634 33.333 0.00 0.00 40.52 2.29
4372 7154 6.947903 AAAATTGCAAAAGCAACAAAAAGG 57.052 29.167 1.71 0.00 32.21 3.11
4373 7155 5.641783 AATTGCAAAAGCAACAAAAAGGT 57.358 30.435 1.71 0.00 32.21 3.50
4374 7156 6.749923 AATTGCAAAAGCAACAAAAAGGTA 57.250 29.167 1.71 0.00 32.21 3.08
4375 7157 5.538067 TTGCAAAAGCAACAAAAAGGTAC 57.462 34.783 0.00 0.00 0.00 3.34
4376 7158 5.879777 ATTGCAAAAGCAACAAAAAGGTACT 59.120 32.000 1.71 0.00 33.71 2.73
4377 7159 6.374053 ATTGCAAAAGCAACAAAAAGGTACTT 59.626 30.769 1.71 0.00 40.96 2.24
4378 7160 7.413988 ATTGCAAAAGCAACAAAAAGGTACTTC 60.414 33.333 1.71 0.00 39.25 3.01
4387 7169 4.781264 AGGTACTTCCTCCGTCCC 57.219 61.111 0.00 0.00 44.42 4.46
4388 7170 1.778981 AGGTACTTCCTCCGTCCCA 59.221 57.895 0.00 0.00 44.42 4.37
4389 7171 0.614134 AGGTACTTCCTCCGTCCCAC 60.614 60.000 0.00 0.00 44.42 4.61
4390 7172 0.901580 GGTACTTCCTCCGTCCCACA 60.902 60.000 0.00 0.00 0.00 4.17
4391 7173 0.971386 GTACTTCCTCCGTCCCACAA 59.029 55.000 0.00 0.00 0.00 3.33
4392 7174 0.971386 TACTTCCTCCGTCCCACAAC 59.029 55.000 0.00 0.00 0.00 3.32
4393 7175 1.052124 ACTTCCTCCGTCCCACAACA 61.052 55.000 0.00 0.00 0.00 3.33
4394 7176 0.602905 CTTCCTCCGTCCCACAACAC 60.603 60.000 0.00 0.00 0.00 3.32
4395 7177 1.338890 TTCCTCCGTCCCACAACACA 61.339 55.000 0.00 0.00 0.00 3.72
4396 7178 1.147376 CCTCCGTCCCACAACACAA 59.853 57.895 0.00 0.00 0.00 3.33
4397 7179 0.884704 CCTCCGTCCCACAACACAAG 60.885 60.000 0.00 0.00 0.00 3.16
4398 7180 0.105964 CTCCGTCCCACAACACAAGA 59.894 55.000 0.00 0.00 0.00 3.02
4399 7181 0.179067 TCCGTCCCACAACACAAGAC 60.179 55.000 0.00 0.00 0.00 3.01
4400 7182 1.931551 CGTCCCACAACACAAGACG 59.068 57.895 0.00 0.00 43.52 4.18
4401 7183 0.808453 CGTCCCACAACACAAGACGT 60.808 55.000 2.88 0.00 43.89 4.34
4402 7184 1.375551 GTCCCACAACACAAGACGTT 58.624 50.000 0.00 0.00 0.00 3.99
4403 7185 1.741145 GTCCCACAACACAAGACGTTT 59.259 47.619 0.00 0.00 0.00 3.60
4404 7186 2.162809 GTCCCACAACACAAGACGTTTT 59.837 45.455 0.00 0.00 0.00 2.43
4405 7187 2.820787 TCCCACAACACAAGACGTTTTT 59.179 40.909 0.00 0.00 0.00 1.94
4406 7188 4.008330 TCCCACAACACAAGACGTTTTTA 58.992 39.130 0.00 0.00 0.00 1.52
4407 7189 4.099824 CCCACAACACAAGACGTTTTTAC 58.900 43.478 0.00 0.00 0.00 2.01
4408 7190 4.379603 CCCACAACACAAGACGTTTTTACA 60.380 41.667 0.00 0.00 0.00 2.41
4409 7191 5.154932 CCACAACACAAGACGTTTTTACAA 58.845 37.500 0.00 0.00 0.00 2.41
4410 7192 5.059955 CCACAACACAAGACGTTTTTACAAC 59.940 40.000 0.00 0.00 0.00 3.32
4411 7193 5.059955 CACAACACAAGACGTTTTTACAACC 59.940 40.000 0.00 0.00 0.00 3.77
4412 7194 5.048573 ACAACACAAGACGTTTTTACAACCT 60.049 36.000 0.00 0.00 0.00 3.50
4413 7195 6.149142 ACAACACAAGACGTTTTTACAACCTA 59.851 34.615 0.00 0.00 0.00 3.08
4414 7196 6.930667 ACACAAGACGTTTTTACAACCTAT 57.069 33.333 0.00 0.00 0.00 2.57
4415 7197 6.721321 ACACAAGACGTTTTTACAACCTATG 58.279 36.000 0.00 0.00 0.00 2.23
4416 7198 6.316890 ACACAAGACGTTTTTACAACCTATGT 59.683 34.615 0.00 0.00 46.36 2.29
4417 7199 7.148205 ACACAAGACGTTTTTACAACCTATGTT 60.148 33.333 0.00 0.00 43.63 2.71
4418 7200 8.336806 CACAAGACGTTTTTACAACCTATGTTA 58.663 33.333 0.00 0.00 43.63 2.41
4419 7201 8.553696 ACAAGACGTTTTTACAACCTATGTTAG 58.446 33.333 0.00 0.00 43.63 2.34
4420 7202 7.125536 AGACGTTTTTACAACCTATGTTAGC 57.874 36.000 0.00 0.00 43.63 3.09
4421 7203 6.932960 AGACGTTTTTACAACCTATGTTAGCT 59.067 34.615 0.00 0.00 43.63 3.32
4422 7204 7.443272 AGACGTTTTTACAACCTATGTTAGCTT 59.557 33.333 0.00 0.00 43.63 3.74
4423 7205 7.357303 ACGTTTTTACAACCTATGTTAGCTTG 58.643 34.615 0.00 0.00 43.63 4.01
4424 7206 6.304683 CGTTTTTACAACCTATGTTAGCTTGC 59.695 38.462 0.00 0.00 43.63 4.01
4425 7207 6.885952 TTTTACAACCTATGTTAGCTTGCA 57.114 33.333 0.00 0.00 43.63 4.08
4426 7208 6.885952 TTTACAACCTATGTTAGCTTGCAA 57.114 33.333 0.00 0.00 43.63 4.08
4427 7209 6.885952 TTACAACCTATGTTAGCTTGCAAA 57.114 33.333 0.00 0.00 43.63 3.68
4428 7210 5.782893 ACAACCTATGTTAGCTTGCAAAA 57.217 34.783 0.00 0.00 40.06 2.44
4429 7211 5.772521 ACAACCTATGTTAGCTTGCAAAAG 58.227 37.500 0.00 0.00 40.06 2.27
4430 7212 5.301805 ACAACCTATGTTAGCTTGCAAAAGT 59.698 36.000 0.00 0.00 40.06 2.66
4431 7213 5.376854 ACCTATGTTAGCTTGCAAAAGTG 57.623 39.130 0.00 0.00 0.00 3.16
4432 7214 5.793563 AACCTATGTTAGCTTGCAAAAGTGC 60.794 40.000 0.00 0.00 41.40 4.40
4433 7215 8.672161 AACCTATGTTAGCTTGCAAAAGTGCC 62.672 42.308 0.00 0.00 40.75 5.01
4440 7222 4.756630 GCAAAAGTGCCCTGTTGG 57.243 55.556 1.03 0.00 45.68 3.77
4441 7223 2.123409 GCAAAAGTGCCCTGTTGGA 58.877 52.632 1.03 0.00 45.68 3.53
4442 7224 0.463620 GCAAAAGTGCCCTGTTGGAA 59.536 50.000 1.03 0.00 45.68 3.53
4443 7225 1.134551 GCAAAAGTGCCCTGTTGGAAA 60.135 47.619 1.03 0.00 45.68 3.13
4444 7226 2.485302 GCAAAAGTGCCCTGTTGGAAAT 60.485 45.455 1.03 0.00 45.68 2.17
4445 7227 3.244044 GCAAAAGTGCCCTGTTGGAAATA 60.244 43.478 1.03 0.00 45.68 1.40
4446 7228 4.563374 GCAAAAGTGCCCTGTTGGAAATAT 60.563 41.667 1.03 0.00 45.68 1.28
4447 7229 5.337169 GCAAAAGTGCCCTGTTGGAAATATA 60.337 40.000 1.03 0.00 45.68 0.86
4448 7230 6.696411 CAAAAGTGCCCTGTTGGAAATATAA 58.304 36.000 0.00 0.00 33.01 0.98
4449 7231 6.530019 AAAGTGCCCTGTTGGAAATATAAG 57.470 37.500 0.00 0.00 35.39 1.73
4450 7232 3.954258 AGTGCCCTGTTGGAAATATAAGC 59.046 43.478 0.00 0.00 35.39 3.09
4451 7233 3.699038 GTGCCCTGTTGGAAATATAAGCA 59.301 43.478 0.00 0.00 35.39 3.91
4452 7234 3.953612 TGCCCTGTTGGAAATATAAGCAG 59.046 43.478 0.00 0.00 35.39 4.24
4453 7235 3.954258 GCCCTGTTGGAAATATAAGCAGT 59.046 43.478 0.00 0.00 35.39 4.40
4454 7236 4.402474 GCCCTGTTGGAAATATAAGCAGTT 59.598 41.667 0.00 0.00 35.39 3.16
4455 7237 5.105351 GCCCTGTTGGAAATATAAGCAGTTT 60.105 40.000 0.00 0.00 35.39 2.66
4456 7238 6.096282 GCCCTGTTGGAAATATAAGCAGTTTA 59.904 38.462 0.00 0.00 35.39 2.01
4457 7239 7.480810 CCCTGTTGGAAATATAAGCAGTTTAC 58.519 38.462 0.00 0.00 35.39 2.01
4458 7240 7.416326 CCCTGTTGGAAATATAAGCAGTTTACC 60.416 40.741 0.00 0.00 35.39 2.85
4459 7241 7.079182 TGTTGGAAATATAAGCAGTTTACCG 57.921 36.000 0.00 0.00 0.00 4.02
4460 7242 6.879993 TGTTGGAAATATAAGCAGTTTACCGA 59.120 34.615 0.00 0.00 0.00 4.69
4461 7243 7.390996 TGTTGGAAATATAAGCAGTTTACCGAA 59.609 33.333 0.00 0.00 0.00 4.30
4462 7244 8.403236 GTTGGAAATATAAGCAGTTTACCGAAT 58.597 33.333 0.00 0.00 0.00 3.34
4463 7245 9.616156 TTGGAAATATAAGCAGTTTACCGAATA 57.384 29.630 0.00 0.00 0.00 1.75
4464 7246 9.616156 TGGAAATATAAGCAGTTTACCGAATAA 57.384 29.630 0.00 0.00 0.00 1.40
4498 7280 9.601217 AACAGAAATATTAGATAAAGCACGACT 57.399 29.630 0.00 0.00 0.00 4.18
4510 7292 9.900710 AGATAAAGCACGACTAGTATAGAAATG 57.099 33.333 0.00 0.00 42.77 2.32
4511 7293 9.894783 GATAAAGCACGACTAGTATAGAAATGA 57.105 33.333 0.00 0.00 42.77 2.57
4528 7310 7.144722 AGAAATGATAAAACAAGTCATGCGA 57.855 32.000 0.00 0.00 33.19 5.10
4529 7311 7.765307 AGAAATGATAAAACAAGTCATGCGAT 58.235 30.769 0.00 0.00 33.19 4.58
4530 7312 8.246180 AGAAATGATAAAACAAGTCATGCGATT 58.754 29.630 0.00 0.00 33.19 3.34
4531 7313 8.761575 AAATGATAAAACAAGTCATGCGATTT 57.238 26.923 0.00 0.00 33.19 2.17
4532 7314 7.745022 ATGATAAAACAAGTCATGCGATTTG 57.255 32.000 0.00 0.00 42.80 2.32
4533 7315 6.907741 TGATAAAACAAGTCATGCGATTTGA 58.092 32.000 4.92 0.00 40.36 2.69
4534 7316 6.801377 TGATAAAACAAGTCATGCGATTTGAC 59.199 34.615 4.92 5.08 40.36 3.18
4535 7317 4.566545 AAACAAGTCATGCGATTTGACA 57.433 36.364 13.12 0.00 44.73 3.58
4536 7318 4.566545 AACAAGTCATGCGATTTGACAA 57.433 36.364 13.12 0.00 44.73 3.18
4537 7319 4.566545 ACAAGTCATGCGATTTGACAAA 57.433 36.364 2.48 2.48 44.73 2.83
4538 7320 5.125100 ACAAGTCATGCGATTTGACAAAT 57.875 34.783 13.24 13.24 44.73 2.32
4539 7321 6.252967 ACAAGTCATGCGATTTGACAAATA 57.747 33.333 13.34 0.00 44.73 1.40
4540 7322 6.317088 ACAAGTCATGCGATTTGACAAATAG 58.683 36.000 13.34 14.04 44.73 1.73
4541 7323 6.149308 ACAAGTCATGCGATTTGACAAATAGA 59.851 34.615 21.02 9.39 44.73 1.98
4542 7324 6.741992 AGTCATGCGATTTGACAAATAGAA 57.258 33.333 21.02 13.38 44.73 2.10
4543 7325 6.779117 AGTCATGCGATTTGACAAATAGAAG 58.221 36.000 21.02 11.26 44.73 2.85
4544 7326 5.967674 GTCATGCGATTTGACAAATAGAAGG 59.032 40.000 21.02 14.28 42.43 3.46
4545 7327 5.647658 TCATGCGATTTGACAAATAGAAGGT 59.352 36.000 21.02 0.00 0.00 3.50
4546 7328 6.821160 TCATGCGATTTGACAAATAGAAGGTA 59.179 34.615 21.02 6.84 0.00 3.08
4547 7329 7.335673 TCATGCGATTTGACAAATAGAAGGTAA 59.664 33.333 21.02 0.00 0.00 2.85
4548 7330 7.441890 TGCGATTTGACAAATAGAAGGTAAA 57.558 32.000 21.02 0.00 0.00 2.01
4549 7331 7.302524 TGCGATTTGACAAATAGAAGGTAAAC 58.697 34.615 21.02 5.12 0.00 2.01
4550 7332 7.041030 TGCGATTTGACAAATAGAAGGTAAACA 60.041 33.333 21.02 7.20 0.00 2.83
4551 7333 7.806014 GCGATTTGACAAATAGAAGGTAAACAA 59.194 33.333 21.02 0.00 0.00 2.83
4552 7334 9.113876 CGATTTGACAAATAGAAGGTAAACAAC 57.886 33.333 13.34 0.00 0.00 3.32
4553 7335 9.959749 GATTTGACAAATAGAAGGTAAACAACA 57.040 29.630 13.34 0.00 0.00 3.33
4555 7337 9.959749 TTTGACAAATAGAAGGTAAACAACATC 57.040 29.630 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 9.932699 TCAAACGATAAAAGTTTTCGAACATAA 57.067 25.926 14.85 0.00 39.50 1.90
15 16 9.372541 GTCAAACGATAAAAGTTTTCGAACATA 57.627 29.630 14.85 0.00 39.50 2.29
16 17 8.126700 AGTCAAACGATAAAAGTTTTCGAACAT 58.873 29.630 14.85 0.00 39.50 2.71
17 18 7.465989 AGTCAAACGATAAAAGTTTTCGAACA 58.534 30.769 14.85 0.00 39.50 3.18
18 19 7.887752 AGTCAAACGATAAAAGTTTTCGAAC 57.112 32.000 14.85 8.19 39.50 3.95
19 20 8.898983 AAAGTCAAACGATAAAAGTTTTCGAA 57.101 26.923 14.85 0.00 39.50 3.71
20 21 9.985318 TTAAAGTCAAACGATAAAAGTTTTCGA 57.015 25.926 14.85 0.00 39.50 3.71
47 48 9.502145 CGAATCCTATTCGAATTCAAATTTGAA 57.498 29.630 30.27 30.27 46.96 2.69
48 49 8.888716 TCGAATCCTATTCGAATTCAAATTTGA 58.111 29.630 17.19 16.91 46.35 2.69
61 62 5.268544 TCGTGTTAGTTCGAATCCTATTCG 58.731 41.667 14.26 14.26 42.74 3.34
62 63 5.686397 CCTCGTGTTAGTTCGAATCCTATTC 59.314 44.000 0.00 0.00 35.69 1.75
63 64 5.126707 ACCTCGTGTTAGTTCGAATCCTATT 59.873 40.000 0.00 0.00 35.69 1.73
64 65 4.643784 ACCTCGTGTTAGTTCGAATCCTAT 59.356 41.667 0.00 0.00 35.69 2.57
65 66 4.012374 ACCTCGTGTTAGTTCGAATCCTA 58.988 43.478 0.00 0.00 35.69 2.94
66 67 2.824341 ACCTCGTGTTAGTTCGAATCCT 59.176 45.455 0.00 0.00 35.69 3.24
67 68 3.227810 ACCTCGTGTTAGTTCGAATCC 57.772 47.619 0.00 0.00 35.69 3.01
77 78 3.738830 ACTGTTGCTAACCTCGTGTTA 57.261 42.857 0.00 1.51 38.42 2.41
78 79 2.614829 ACTGTTGCTAACCTCGTGTT 57.385 45.000 0.00 0.00 41.11 3.32
79 80 3.387397 GTTACTGTTGCTAACCTCGTGT 58.613 45.455 0.00 0.00 0.00 4.49
80 81 2.735134 GGTTACTGTTGCTAACCTCGTG 59.265 50.000 4.92 0.00 40.03 4.35
81 82 2.608752 CGGTTACTGTTGCTAACCTCGT 60.609 50.000 9.43 2.42 40.72 4.18
82 83 1.990563 CGGTTACTGTTGCTAACCTCG 59.009 52.381 9.43 0.00 40.72 4.63
83 84 3.251571 CTCGGTTACTGTTGCTAACCTC 58.748 50.000 9.43 0.00 40.72 3.85
84 85 2.028385 CCTCGGTTACTGTTGCTAACCT 60.028 50.000 9.43 0.00 40.72 3.50
85 86 2.289257 ACCTCGGTTACTGTTGCTAACC 60.289 50.000 2.47 2.47 39.85 2.85
86 87 2.735134 CACCTCGGTTACTGTTGCTAAC 59.265 50.000 0.00 0.00 0.00 2.34
87 88 2.629137 TCACCTCGGTTACTGTTGCTAA 59.371 45.455 0.00 0.00 0.00 3.09
88 89 2.029649 GTCACCTCGGTTACTGTTGCTA 60.030 50.000 0.00 0.00 0.00 3.49
89 90 1.045407 TCACCTCGGTTACTGTTGCT 58.955 50.000 0.00 0.00 0.00 3.91
90 91 1.145803 GTCACCTCGGTTACTGTTGC 58.854 55.000 0.00 0.00 0.00 4.17
91 92 1.269413 ACGTCACCTCGGTTACTGTTG 60.269 52.381 0.00 0.00 34.94 3.33
92 93 1.035139 ACGTCACCTCGGTTACTGTT 58.965 50.000 0.00 0.00 34.94 3.16
93 94 0.313043 CACGTCACCTCGGTTACTGT 59.687 55.000 0.00 0.00 34.94 3.55
94 95 0.388134 CCACGTCACCTCGGTTACTG 60.388 60.000 0.00 0.00 34.94 2.74
95 96 1.962144 CCACGTCACCTCGGTTACT 59.038 57.895 0.00 0.00 34.94 2.24
96 97 1.735559 GCCACGTCACCTCGGTTAC 60.736 63.158 0.00 0.00 34.94 2.50
97 98 1.537814 ATGCCACGTCACCTCGGTTA 61.538 55.000 0.00 0.00 34.94 2.85
98 99 2.781595 GATGCCACGTCACCTCGGTT 62.782 60.000 0.00 0.00 34.94 4.44
99 100 3.296709 GATGCCACGTCACCTCGGT 62.297 63.158 0.00 0.00 34.94 4.69
100 101 2.509336 GATGCCACGTCACCTCGG 60.509 66.667 0.00 0.00 34.94 4.63
101 102 2.880879 CGATGCCACGTCACCTCG 60.881 66.667 0.00 0.00 0.00 4.63
102 103 0.108992 TAACGATGCCACGTCACCTC 60.109 55.000 5.80 0.00 45.83 3.85
103 104 0.319083 TTAACGATGCCACGTCACCT 59.681 50.000 5.80 0.00 45.83 4.00
104 105 0.441145 GTTAACGATGCCACGTCACC 59.559 55.000 5.80 0.00 45.83 4.02
105 106 0.092351 CGTTAACGATGCCACGTCAC 59.908 55.000 23.35 5.66 45.83 3.67
106 107 1.619526 GCGTTAACGATGCCACGTCA 61.620 55.000 31.03 0.00 45.83 4.35
107 108 1.058284 GCGTTAACGATGCCACGTC 59.942 57.895 31.03 6.46 45.83 4.34
109 110 2.019476 CGCGTTAACGATGCCACG 59.981 61.111 31.03 18.90 43.02 4.94
110 111 2.398036 CCGCGTTAACGATGCCAC 59.602 61.111 31.03 11.25 43.02 5.01
111 112 2.581208 ATCCCGCGTTAACGATGCCA 62.581 55.000 31.03 10.48 43.02 4.92
112 113 1.433837 AATCCCGCGTTAACGATGCC 61.434 55.000 31.03 12.34 43.02 4.40
113 114 1.071041 GTAATCCCGCGTTAACGATGC 60.071 52.381 31.03 12.70 43.02 3.91
114 115 2.217847 CAGTAATCCCGCGTTAACGATG 59.782 50.000 31.03 20.68 43.02 3.84
115 116 2.159198 ACAGTAATCCCGCGTTAACGAT 60.159 45.455 31.03 12.84 43.02 3.73
116 117 1.202114 ACAGTAATCCCGCGTTAACGA 59.798 47.619 31.03 10.92 43.02 3.85
117 118 1.632422 ACAGTAATCCCGCGTTAACG 58.368 50.000 23.40 23.40 43.27 3.18
118 119 3.774066 ACTACAGTAATCCCGCGTTAAC 58.226 45.455 4.92 0.00 0.00 2.01
119 120 3.696051 AGACTACAGTAATCCCGCGTTAA 59.304 43.478 4.92 0.00 0.00 2.01
120 121 3.282021 AGACTACAGTAATCCCGCGTTA 58.718 45.455 4.92 0.00 0.00 3.18
121 122 2.097825 AGACTACAGTAATCCCGCGTT 58.902 47.619 4.92 0.00 0.00 4.84
122 123 1.760192 AGACTACAGTAATCCCGCGT 58.240 50.000 4.92 0.00 0.00 6.01
123 124 3.976793 TTAGACTACAGTAATCCCGCG 57.023 47.619 0.00 0.00 0.00 6.46
124 125 7.034397 GGATAATTAGACTACAGTAATCCCGC 58.966 42.308 0.00 0.00 0.00 6.13
125 126 7.249147 CGGATAATTAGACTACAGTAATCCCG 58.751 42.308 0.00 0.00 0.00 5.14
126 127 7.363617 CCCGGATAATTAGACTACAGTAATCCC 60.364 44.444 0.73 0.00 0.00 3.85
127 128 7.545489 CCCGGATAATTAGACTACAGTAATCC 58.455 42.308 0.73 0.00 0.00 3.01
128 129 7.034397 GCCCGGATAATTAGACTACAGTAATC 58.966 42.308 0.73 0.00 0.00 1.75
129 130 6.349944 CGCCCGGATAATTAGACTACAGTAAT 60.350 42.308 0.73 0.00 0.00 1.89
130 131 5.048504 CGCCCGGATAATTAGACTACAGTAA 60.049 44.000 0.73 0.00 0.00 2.24
131 132 4.456911 CGCCCGGATAATTAGACTACAGTA 59.543 45.833 0.73 0.00 0.00 2.74
132 133 3.255149 CGCCCGGATAATTAGACTACAGT 59.745 47.826 0.73 0.00 0.00 3.55
133 134 3.255149 ACGCCCGGATAATTAGACTACAG 59.745 47.826 0.73 0.00 0.00 2.74
134 135 3.225104 ACGCCCGGATAATTAGACTACA 58.775 45.455 0.73 0.00 0.00 2.74
135 136 3.254166 TGACGCCCGGATAATTAGACTAC 59.746 47.826 0.73 0.00 0.00 2.73
136 137 3.254166 GTGACGCCCGGATAATTAGACTA 59.746 47.826 0.73 0.00 0.00 2.59
137 138 2.035576 GTGACGCCCGGATAATTAGACT 59.964 50.000 0.73 0.00 0.00 3.24
138 139 2.223876 TGTGACGCCCGGATAATTAGAC 60.224 50.000 0.73 0.00 0.00 2.59
139 140 2.033372 TGTGACGCCCGGATAATTAGA 58.967 47.619 0.73 0.00 0.00 2.10
140 141 2.132762 GTGTGACGCCCGGATAATTAG 58.867 52.381 0.73 0.00 0.00 1.73
141 142 1.758280 AGTGTGACGCCCGGATAATTA 59.242 47.619 0.73 0.00 0.00 1.40
142 143 0.539986 AGTGTGACGCCCGGATAATT 59.460 50.000 0.73 0.00 0.00 1.40
143 144 0.539986 AAGTGTGACGCCCGGATAAT 59.460 50.000 0.73 0.00 0.00 1.28
144 145 0.322322 AAAGTGTGACGCCCGGATAA 59.678 50.000 0.73 0.00 0.00 1.75
145 146 0.390603 CAAAGTGTGACGCCCGGATA 60.391 55.000 0.73 0.00 0.00 2.59
146 147 1.671054 CAAAGTGTGACGCCCGGAT 60.671 57.895 0.73 0.00 0.00 4.18
147 148 2.280524 CAAAGTGTGACGCCCGGA 60.281 61.111 0.73 0.00 0.00 5.14
148 149 4.025401 GCAAAGTGTGACGCCCGG 62.025 66.667 0.00 0.00 0.00 5.73
149 150 2.954753 GAGCAAAGTGTGACGCCCG 61.955 63.158 0.00 0.00 0.00 6.13
150 151 2.946762 GAGCAAAGTGTGACGCCC 59.053 61.111 0.00 0.00 0.00 6.13
151 152 2.551270 CGAGCAAAGTGTGACGCC 59.449 61.111 0.00 0.00 0.00 5.68
152 153 2.551270 CCGAGCAAAGTGTGACGC 59.449 61.111 0.00 0.00 0.00 5.19
153 154 2.162921 CTGCCGAGCAAAGTGTGACG 62.163 60.000 0.35 0.00 38.41 4.35
154 155 1.160329 ACTGCCGAGCAAAGTGTGAC 61.160 55.000 0.35 0.00 38.41 3.67
155 156 1.146041 ACTGCCGAGCAAAGTGTGA 59.854 52.632 0.35 0.00 38.41 3.58
156 157 1.280746 CACTGCCGAGCAAAGTGTG 59.719 57.895 8.90 6.09 38.41 3.82
157 158 0.748005 AACACTGCCGAGCAAAGTGT 60.748 50.000 14.03 14.03 45.33 3.55
158 159 0.381801 AAACACTGCCGAGCAAAGTG 59.618 50.000 13.11 13.11 39.52 3.16
159 160 0.381801 CAAACACTGCCGAGCAAAGT 59.618 50.000 0.35 0.00 38.41 2.66
160 161 0.936297 GCAAACACTGCCGAGCAAAG 60.936 55.000 0.35 0.00 46.13 2.77
161 162 1.065600 GCAAACACTGCCGAGCAAA 59.934 52.632 0.35 0.00 46.13 3.68
162 163 2.721231 GCAAACACTGCCGAGCAA 59.279 55.556 0.35 0.00 46.13 3.91
239 240 1.965930 GCCCATGTGTCGTCTGCAA 60.966 57.895 0.00 0.00 0.00 4.08
244 245 1.009829 GATCAAGCCCATGTGTCGTC 58.990 55.000 0.00 0.00 0.00 4.20
247 248 1.097547 CCGGATCAAGCCCATGTGTC 61.098 60.000 0.00 0.00 0.00 3.67
270 273 0.821711 CCGAGTGTTGCTCCCCAAAA 60.822 55.000 0.00 0.00 41.10 2.44
274 277 2.047179 GTCCGAGTGTTGCTCCCC 60.047 66.667 0.00 0.00 41.10 4.81
285 288 2.108168 TGGATGGGTAGAAAGTCCGAG 58.892 52.381 0.00 0.00 0.00 4.63
319 322 4.635765 TGGCAACATACACTTCTAATCTGC 59.364 41.667 0.00 0.00 46.17 4.26
421 457 2.197465 GGACAGGAATAAGTCACCCCT 58.803 52.381 0.00 0.00 36.50 4.79
459 495 2.859538 GTGCAAAATCTTGGTGTGTGTG 59.140 45.455 0.00 0.00 32.76 3.82
491 527 5.614308 TCAATGTGACAAGAAGATGTGAGT 58.386 37.500 0.00 0.00 32.57 3.41
562 598 6.259387 GCGTGTAGCTAGGGTTTGTTAATAAT 59.741 38.462 0.00 0.00 44.04 1.28
637 673 1.339055 TGCTCCTACTGATTTTGCGCT 60.339 47.619 9.73 0.00 0.00 5.92
694 730 1.468054 GCGTGGCATGACCTCAATTTC 60.468 52.381 11.71 0.00 40.22 2.17
712 748 4.970472 TTTATTTTCTTTGCTTGCTGCG 57.030 36.364 0.00 0.00 46.63 5.18
783 820 7.430211 TGCTCGTGTTTTAGTTAGACATATACG 59.570 37.037 0.00 0.00 0.00 3.06
824 880 3.053619 TCCTCTCTGCTCTGGTACATACA 60.054 47.826 0.00 0.00 38.20 2.29
849 2313 1.472728 CGTTTAACTAGCCTGCGGGAT 60.473 52.381 18.31 13.10 34.56 3.85
852 2316 1.135199 TCTCGTTTAACTAGCCTGCGG 60.135 52.381 0.00 0.00 0.00 5.69
854 2318 1.918609 CGTCTCGTTTAACTAGCCTGC 59.081 52.381 0.00 0.00 0.00 4.85
873 2337 3.371898 TGCTACAAAATGCATGACTCTCG 59.628 43.478 0.00 0.00 33.94 4.04
944 2408 4.059459 CGCACGCGTGAGAACCAC 62.059 66.667 41.19 20.75 42.30 4.16
982 2446 4.828925 GTGCGAGCAGAGAGGGGC 62.829 72.222 0.00 0.00 0.00 5.80
1000 2464 0.915364 GGCAAGGAGGGAGAAGTCAT 59.085 55.000 0.00 0.00 0.00 3.06
1041 2508 0.692756 TGTCTGTGTGGGTGGGAAGA 60.693 55.000 0.00 0.00 0.00 2.87
1042 2509 0.535102 GTGTCTGTGTGGGTGGGAAG 60.535 60.000 0.00 0.00 0.00 3.46
1043 2510 1.275421 TGTGTCTGTGTGGGTGGGAA 61.275 55.000 0.00 0.00 0.00 3.97
1169 2643 2.929398 CCAAAATAAACGGCAAGATGGC 59.071 45.455 0.00 0.00 39.85 4.40
1217 2692 0.092857 GCAAAATAAACGGCAAGCGC 59.907 50.000 0.00 0.00 37.44 5.92
1425 2905 1.286570 CCATTGCAAGCAAGTCGCA 59.713 52.632 13.35 0.00 46.13 5.10
1434 2914 1.345415 AGCCAAGGAAACCATTGCAAG 59.655 47.619 4.94 0.00 0.00 4.01
1478 2961 7.392673 TCTCTACCAAGTTACCAACTAGTACAG 59.607 40.741 0.00 0.00 41.91 2.74
1515 3009 8.916654 CAGCCAATATCTAAACGTATTACTCAG 58.083 37.037 0.00 0.00 0.00 3.35
1529 3023 4.988540 GCGTTCATGTACAGCCAATATCTA 59.011 41.667 0.33 0.00 0.00 1.98
1594 3088 4.457257 ACTGAGAACAGCTTCCTAATTTGC 59.543 41.667 0.00 0.00 46.95 3.68
1598 3092 4.530161 ACTGACTGAGAACAGCTTCCTAAT 59.470 41.667 10.12 0.00 46.95 1.73
1650 3163 3.231207 TCTATGTCAGAGAGGTAGGCC 57.769 52.381 0.00 0.00 0.00 5.19
1651 3164 5.163561 GCATATCTATGTCAGAGAGGTAGGC 60.164 48.000 3.19 1.70 36.48 3.93
1669 3182 2.035961 TGACGGGCTTACTCTGCATATC 59.964 50.000 0.00 0.00 0.00 1.63
1692 3205 3.305267 CGCTCATGGGAGAACAGAGATAG 60.305 52.174 0.00 0.00 44.26 2.08
1750 3263 3.319755 CATTTTGTTTAGTGGCTGCCAG 58.680 45.455 24.10 1.21 32.34 4.85
1752 3265 2.037121 ACCATTTTGTTTAGTGGCTGCC 59.963 45.455 12.87 12.87 35.11 4.85
1753 3266 3.385193 ACCATTTTGTTTAGTGGCTGC 57.615 42.857 0.00 0.00 35.11 5.25
1754 3267 4.923281 GCTAACCATTTTGTTTAGTGGCTG 59.077 41.667 0.00 0.00 35.11 4.85
1776 3317 7.435068 TTTTAGTATGAGGAAACTGACAAGC 57.565 36.000 0.00 0.00 44.43 4.01
1792 3333 9.255029 AGATGCACCCAAATAACTTTTTAGTAT 57.745 29.630 0.00 0.00 0.00 2.12
1796 3337 9.921637 CTTAAGATGCACCCAAATAACTTTTTA 57.078 29.630 0.00 0.00 0.00 1.52
1797 3338 8.428852 ACTTAAGATGCACCCAAATAACTTTTT 58.571 29.630 10.09 0.00 0.00 1.94
1798 3339 7.962441 ACTTAAGATGCACCCAAATAACTTTT 58.038 30.769 10.09 0.00 0.00 2.27
1799 3340 7.539034 ACTTAAGATGCACCCAAATAACTTT 57.461 32.000 10.09 0.00 0.00 2.66
1822 3396 5.405873 GCTTCTAGTACACTCAAGTTCCAAC 59.594 44.000 0.00 0.00 0.00 3.77
1836 3410 5.579511 TGTGGATTAAAAGCGCTTCTAGTAC 59.420 40.000 25.24 12.46 0.00 2.73
1837 3411 5.726397 TGTGGATTAAAAGCGCTTCTAGTA 58.274 37.500 25.24 10.64 0.00 1.82
1904 3478 2.823829 GAGCGCGTTAGGCAATGGG 61.824 63.158 8.43 0.00 43.84 4.00
1905 3479 2.709475 GAGCGCGTTAGGCAATGG 59.291 61.111 8.43 0.00 43.84 3.16
1906 3480 2.321060 CGAGCGCGTTAGGCAATG 59.679 61.111 8.43 0.00 43.84 2.82
1907 3481 3.564027 GCGAGCGCGTTAGGCAAT 61.564 61.111 12.44 0.00 43.84 3.56
1927 3501 5.407407 AAGAGCGTCTTCTTCATTAAGGA 57.593 39.130 0.00 0.00 28.99 3.36
1956 3530 0.184933 AGGTTTGCTAAGTGGGTGCA 59.815 50.000 0.00 0.00 34.69 4.57
1975 3549 9.330063 CTTTAATACTCAGATTAGGACATTGCA 57.670 33.333 0.00 0.00 0.00 4.08
1990 3564 6.767902 GGTGCAGAATCCATCTTTAATACTCA 59.232 38.462 0.00 0.00 35.73 3.41
1991 3565 6.767902 TGGTGCAGAATCCATCTTTAATACTC 59.232 38.462 0.00 0.00 35.73 2.59
1992 3566 6.662755 TGGTGCAGAATCCATCTTTAATACT 58.337 36.000 0.00 0.00 35.73 2.12
1993 3567 6.942532 TGGTGCAGAATCCATCTTTAATAC 57.057 37.500 0.00 0.00 35.73 1.89
2025 3604 3.425525 CGTAACCTATAGATGCACTTGCG 59.574 47.826 0.00 0.00 45.83 4.85
2026 3605 4.209288 CACGTAACCTATAGATGCACTTGC 59.791 45.833 0.00 0.00 42.50 4.01
2027 3606 4.209288 GCACGTAACCTATAGATGCACTTG 59.791 45.833 0.00 0.00 0.00 3.16
2028 3607 4.142026 TGCACGTAACCTATAGATGCACTT 60.142 41.667 0.00 0.00 36.72 3.16
2029 3608 3.383505 TGCACGTAACCTATAGATGCACT 59.616 43.478 0.00 0.00 36.72 4.40
2030 3609 3.713288 TGCACGTAACCTATAGATGCAC 58.287 45.455 0.00 0.00 36.72 4.57
2031 3610 4.116961 GTTGCACGTAACCTATAGATGCA 58.883 43.478 0.00 4.75 39.68 3.96
2032 3611 3.493503 GGTTGCACGTAACCTATAGATGC 59.506 47.826 12.16 2.28 45.29 3.91
2042 3621 2.147958 TCTGGAATGGTTGCACGTAAC 58.852 47.619 0.00 0.00 0.00 2.50
2043 3622 2.552599 TCTGGAATGGTTGCACGTAA 57.447 45.000 0.00 0.00 0.00 3.18
2044 3623 2.746904 CAATCTGGAATGGTTGCACGTA 59.253 45.455 0.00 0.00 0.00 3.57
2045 3624 1.541147 CAATCTGGAATGGTTGCACGT 59.459 47.619 0.00 0.00 0.00 4.49
2046 3625 1.733389 GCAATCTGGAATGGTTGCACG 60.733 52.381 7.50 0.00 44.63 5.34
2052 3631 3.118112 CAGTAGGAGCAATCTGGAATGGT 60.118 47.826 0.00 0.00 0.00 3.55
2058 3637 2.419297 GGTGTCAGTAGGAGCAATCTGG 60.419 54.545 0.00 0.00 0.00 3.86
2116 3695 0.548510 AGCCCTTCATAGTCCCTTGC 59.451 55.000 0.00 0.00 0.00 4.01
2190 3785 4.610945 CACATCACCTTTGTTTCCTTCAC 58.389 43.478 0.00 0.00 0.00 3.18
2217 3813 2.202919 TCAGCCATCATGGACGCG 60.203 61.111 8.30 3.53 40.96 6.01
2373 3988 3.060740 CAGGTGTTTGTTCGTTCGTACTC 60.061 47.826 3.98 0.00 0.00 2.59
2511 4128 2.671070 CCCAACAGAGCCCACGAT 59.329 61.111 0.00 0.00 0.00 3.73
2521 4138 1.526917 GATGGCGATCCCCCAACAG 60.527 63.158 4.05 0.00 35.67 3.16
2526 4143 3.302347 CTAGCGATGGCGATCCCCC 62.302 68.421 2.84 0.00 46.35 5.40
2564 4181 2.278857 CCGATCCACGAGAAGGCG 60.279 66.667 0.00 0.00 45.77 5.52
2586 4203 0.739462 TCATGGCAATCGACGTGGTC 60.739 55.000 0.00 0.00 37.79 4.02
2598 4215 1.215912 CGGCAGCAAAATCATGGCA 59.784 52.632 0.00 0.00 39.31 4.92
2618 4235 4.785453 GGACAGGAGGGCGCCAAG 62.785 72.222 30.85 14.74 0.00 3.61
2636 4253 4.038080 CCACTTTTCGCGGCCACC 62.038 66.667 6.13 0.00 0.00 4.61
2836 5547 0.599204 TGGACGGACGCAAGAAAGAC 60.599 55.000 0.00 0.00 43.62 3.01
2871 5582 2.652382 TTCCAAAGCTCCGCGACACA 62.652 55.000 8.23 0.00 0.00 3.72
2943 5654 8.888579 TCAGAAGAAAATAAATATCCGAGACC 57.111 34.615 0.00 0.00 0.00 3.85
3000 5713 0.615331 TCTTCTTCTCCAAGCCGCAT 59.385 50.000 0.00 0.00 0.00 4.73
3007 5720 2.878406 CGCCAAACTTCTTCTTCTCCAA 59.122 45.455 0.00 0.00 0.00 3.53
3011 5724 1.420138 TCCCGCCAAACTTCTTCTTCT 59.580 47.619 0.00 0.00 0.00 2.85
3012 5725 1.892209 TCCCGCCAAACTTCTTCTTC 58.108 50.000 0.00 0.00 0.00 2.87
3013 5726 2.162681 CATCCCGCCAAACTTCTTCTT 58.837 47.619 0.00 0.00 0.00 2.52
3075 5788 7.119709 TGCTTGACAGTGCCTATATTTACTA 57.880 36.000 0.00 0.00 0.00 1.82
3076 5789 5.989477 TGCTTGACAGTGCCTATATTTACT 58.011 37.500 0.00 0.00 0.00 2.24
3077 5790 6.293626 CCATGCTTGACAGTGCCTATATTTAC 60.294 42.308 0.22 0.00 0.00 2.01
3078 5802 5.764686 CCATGCTTGACAGTGCCTATATTTA 59.235 40.000 0.22 0.00 0.00 1.40
3080 5804 4.139786 CCATGCTTGACAGTGCCTATATT 58.860 43.478 0.22 0.00 0.00 1.28
3082 5806 2.771372 TCCATGCTTGACAGTGCCTATA 59.229 45.455 0.22 0.00 0.00 1.31
3102 5831 9.747898 TCTTCTTCTAGAGACCCATAGATATTC 57.252 37.037 0.00 0.00 33.02 1.75
3162 5907 2.357009 CTCATGGTCCTGCATTGTTAGC 59.643 50.000 0.00 0.00 0.00 3.09
3163 5908 2.357009 GCTCATGGTCCTGCATTGTTAG 59.643 50.000 0.00 0.00 0.00 2.34
3164 5909 2.368439 GCTCATGGTCCTGCATTGTTA 58.632 47.619 0.00 0.00 0.00 2.41
3165 5910 1.180029 GCTCATGGTCCTGCATTGTT 58.820 50.000 0.00 0.00 0.00 2.83
3166 5911 1.028330 CGCTCATGGTCCTGCATTGT 61.028 55.000 0.00 0.00 0.00 2.71
3167 5912 1.028330 ACGCTCATGGTCCTGCATTG 61.028 55.000 0.00 0.00 0.00 2.82
3244 5989 9.261180 TGAATAAGTAAGTGAGAGAAGTTGTTG 57.739 33.333 0.00 0.00 0.00 3.33
3245 5990 9.482627 CTGAATAAGTAAGTGAGAGAAGTTGTT 57.517 33.333 0.00 0.00 0.00 2.83
3246 5991 7.600752 GCTGAATAAGTAAGTGAGAGAAGTTGT 59.399 37.037 0.00 0.00 0.00 3.32
3247 5992 7.064016 GGCTGAATAAGTAAGTGAGAGAAGTTG 59.936 40.741 0.00 0.00 0.00 3.16
3248 5993 7.100409 GGCTGAATAAGTAAGTGAGAGAAGTT 58.900 38.462 0.00 0.00 0.00 2.66
3249 5994 6.211584 TGGCTGAATAAGTAAGTGAGAGAAGT 59.788 38.462 0.00 0.00 0.00 3.01
3250 5995 6.634805 TGGCTGAATAAGTAAGTGAGAGAAG 58.365 40.000 0.00 0.00 0.00 2.85
3251 5996 6.605471 TGGCTGAATAAGTAAGTGAGAGAA 57.395 37.500 0.00 0.00 0.00 2.87
3252 5997 6.381133 TCATGGCTGAATAAGTAAGTGAGAGA 59.619 38.462 0.00 0.00 0.00 3.10
3253 5998 6.577103 TCATGGCTGAATAAGTAAGTGAGAG 58.423 40.000 0.00 0.00 0.00 3.20
3254 5999 6.544928 TCATGGCTGAATAAGTAAGTGAGA 57.455 37.500 0.00 0.00 0.00 3.27
3255 6000 7.615582 TTTCATGGCTGAATAAGTAAGTGAG 57.384 36.000 0.00 0.00 40.95 3.51
3256 6001 7.994425 TTTTCATGGCTGAATAAGTAAGTGA 57.006 32.000 0.00 0.00 40.95 3.41
3257 6002 9.294030 GATTTTTCATGGCTGAATAAGTAAGTG 57.706 33.333 0.00 0.00 40.95 3.16
3258 6003 9.247861 AGATTTTTCATGGCTGAATAAGTAAGT 57.752 29.630 0.00 0.00 40.95 2.24
3261 6006 9.241919 TGAAGATTTTTCATGGCTGAATAAGTA 57.758 29.630 0.00 0.00 40.95 2.24
3278 6023 8.528643 TCAGATGCAATTCTGAATGAAGATTTT 58.471 29.630 15.96 0.00 46.92 1.82
3280 6025 7.640597 TCAGATGCAATTCTGAATGAAGATT 57.359 32.000 15.96 0.00 46.92 2.40
3318 6063 3.129871 GAGAAAATGGCAGGAGATCGAG 58.870 50.000 0.00 0.00 0.00 4.04
3372 6117 1.153549 GGGCTTGAGCGATTCGACT 60.154 57.895 10.88 6.48 43.26 4.18
3486 6231 5.059833 GGAGTTCTCTGAAGAAAGCAGAAA 58.940 41.667 0.00 0.00 43.04 2.52
3487 6232 4.346418 AGGAGTTCTCTGAAGAAAGCAGAA 59.654 41.667 0.00 0.00 43.04 3.02
3600 6348 2.009774 ACGTAGGTGAATCTGCAATGC 58.990 47.619 0.00 0.00 0.00 3.56
3649 6397 1.592400 CTGCTGCATTGTGACCCCTG 61.592 60.000 1.31 0.00 0.00 4.45
3738 6489 7.417496 AAGTTGTTTCCTACAGTACGAATTC 57.583 36.000 0.00 0.00 38.19 2.17
3747 6498 3.983344 GCATGCAAAGTTGTTTCCTACAG 59.017 43.478 14.21 0.00 38.19 2.74
3811 6567 3.390135 ACCATGATAGCGACGGTTAATG 58.610 45.455 4.26 7.05 0.00 1.90
3868 6625 8.870879 GTTATTTTAGGGCGAATATAGTAGCAG 58.129 37.037 7.56 0.00 0.00 4.24
4019 6778 9.225436 TCAGCAACATGTGATACAAAATAACTA 57.775 29.630 0.00 0.00 0.00 2.24
4087 6847 2.681848 ACTCAGTTCGGAGTGTATACGG 59.318 50.000 4.96 0.00 46.02 4.02
4112 6872 7.088905 ACTCGAATACAAATACGGATGGTATC 58.911 38.462 5.85 1.24 40.98 2.24
4127 6887 4.913335 AAGCGGATCTTACTCGAATACA 57.087 40.909 0.00 0.00 32.10 2.29
4140 6900 1.729284 TACGAAACCCAAAGCGGATC 58.271 50.000 0.00 0.00 36.56 3.36
4153 6913 8.464404 CGATTAGGGATGTAATAGGATACGAAA 58.536 37.037 0.00 0.00 46.39 3.46
4166 6926 3.814625 TGCAAATGCGATTAGGGATGTA 58.185 40.909 0.35 0.00 45.83 2.29
4201 6961 5.466728 CCTAGCATATGCACGTGTTCTATTT 59.533 40.000 28.62 6.48 45.16 1.40
4203 6963 4.560128 CCTAGCATATGCACGTGTTCTAT 58.440 43.478 28.62 8.87 45.16 1.98
4204 6964 3.798889 GCCTAGCATATGCACGTGTTCTA 60.799 47.826 28.62 9.34 45.16 2.10
4206 6966 1.261619 GCCTAGCATATGCACGTGTTC 59.738 52.381 28.62 7.81 45.16 3.18
4216 6976 6.737070 CGAAGATCGGATAATGCCTAGCATAT 60.737 42.308 1.91 0.00 41.53 1.78
4217 6977 5.450550 CGAAGATCGGATAATGCCTAGCATA 60.451 44.000 1.91 0.00 41.53 3.14
4218 6978 4.679106 CGAAGATCGGATAATGCCTAGCAT 60.679 45.833 0.00 0.00 43.05 3.79
4219 6979 3.367395 CGAAGATCGGATAATGCCTAGCA 60.367 47.826 0.00 0.00 38.55 3.49
4220 6980 3.182967 CGAAGATCGGATAATGCCTAGC 58.817 50.000 0.00 0.00 36.00 3.42
4263 7027 9.056005 CATCATGAGGTAGATTTTTCCGATAAA 57.944 33.333 0.09 0.00 0.00 1.40
4372 7154 0.971386 TTGTGGGACGGAGGAAGTAC 59.029 55.000 0.00 0.00 0.00 2.73
4373 7155 0.971386 GTTGTGGGACGGAGGAAGTA 59.029 55.000 0.00 0.00 0.00 2.24
4374 7156 1.052124 TGTTGTGGGACGGAGGAAGT 61.052 55.000 0.00 0.00 0.00 3.01
4375 7157 0.602905 GTGTTGTGGGACGGAGGAAG 60.603 60.000 0.00 0.00 0.00 3.46
4376 7158 1.338890 TGTGTTGTGGGACGGAGGAA 61.339 55.000 0.00 0.00 0.00 3.36
4377 7159 1.338890 TTGTGTTGTGGGACGGAGGA 61.339 55.000 0.00 0.00 0.00 3.71
4378 7160 0.884704 CTTGTGTTGTGGGACGGAGG 60.885 60.000 0.00 0.00 0.00 4.30
4379 7161 0.105964 TCTTGTGTTGTGGGACGGAG 59.894 55.000 0.00 0.00 0.00 4.63
4380 7162 0.179067 GTCTTGTGTTGTGGGACGGA 60.179 55.000 0.00 0.00 0.00 4.69
4381 7163 1.495584 CGTCTTGTGTTGTGGGACGG 61.496 60.000 0.00 0.00 43.69 4.79
4382 7164 1.931551 CGTCTTGTGTTGTGGGACG 59.068 57.895 0.00 0.00 42.38 4.79
4383 7165 1.375551 AACGTCTTGTGTTGTGGGAC 58.624 50.000 0.00 0.00 0.00 4.46
4384 7166 2.116827 AAACGTCTTGTGTTGTGGGA 57.883 45.000 0.00 0.00 0.00 4.37
4385 7167 2.931512 AAAACGTCTTGTGTTGTGGG 57.068 45.000 0.00 0.00 0.00 4.61
4386 7168 4.724303 TGTAAAAACGTCTTGTGTTGTGG 58.276 39.130 0.00 0.00 0.00 4.17
4387 7169 5.059955 GGTTGTAAAAACGTCTTGTGTTGTG 59.940 40.000 0.00 0.00 0.00 3.33
4388 7170 5.048573 AGGTTGTAAAAACGTCTTGTGTTGT 60.049 36.000 0.00 0.00 0.00 3.32
4389 7171 5.395642 AGGTTGTAAAAACGTCTTGTGTTG 58.604 37.500 0.00 0.00 0.00 3.33
4390 7172 5.632244 AGGTTGTAAAAACGTCTTGTGTT 57.368 34.783 0.00 0.00 0.00 3.32
4391 7173 6.316890 ACATAGGTTGTAAAAACGTCTTGTGT 59.683 34.615 0.00 0.00 36.57 3.72
4392 7174 6.721321 ACATAGGTTGTAAAAACGTCTTGTG 58.279 36.000 0.00 0.00 36.57 3.33
4393 7175 6.930667 ACATAGGTTGTAAAAACGTCTTGT 57.069 33.333 0.00 0.00 36.57 3.16
4394 7176 7.532884 GCTAACATAGGTTGTAAAAACGTCTTG 59.467 37.037 2.37 0.00 37.68 3.02
4395 7177 7.443272 AGCTAACATAGGTTGTAAAAACGTCTT 59.557 33.333 2.37 0.00 37.68 3.01
4396 7178 6.932960 AGCTAACATAGGTTGTAAAAACGTCT 59.067 34.615 2.37 0.00 37.68 4.18
4397 7179 7.125536 AGCTAACATAGGTTGTAAAAACGTC 57.874 36.000 2.37 0.00 37.68 4.34
4398 7180 7.500720 AAGCTAACATAGGTTGTAAAAACGT 57.499 32.000 2.37 0.00 44.11 3.99
4408 7190 5.772521 CACTTTTGCAAGCTAACATAGGTT 58.227 37.500 0.00 0.00 46.49 3.50
4409 7191 5.376854 CACTTTTGCAAGCTAACATAGGT 57.623 39.130 0.00 0.00 38.32 3.08
4424 7206 2.977772 TTTCCAACAGGGCACTTTTG 57.022 45.000 7.93 7.93 34.84 2.44
4425 7207 6.574269 GCTTATATTTCCAACAGGGCACTTTT 60.574 38.462 0.00 0.00 36.21 2.27
4426 7208 5.105351 GCTTATATTTCCAACAGGGCACTTT 60.105 40.000 0.00 0.00 36.21 2.66
4427 7209 4.402474 GCTTATATTTCCAACAGGGCACTT 59.598 41.667 0.00 0.00 36.21 3.16
4428 7210 3.954258 GCTTATATTTCCAACAGGGCACT 59.046 43.478 0.00 0.00 36.21 4.40
4429 7211 3.699038 TGCTTATATTTCCAACAGGGCAC 59.301 43.478 0.00 0.00 36.21 5.01
4430 7212 3.953612 CTGCTTATATTTCCAACAGGGCA 59.046 43.478 0.00 0.00 36.21 5.36
4431 7213 3.954258 ACTGCTTATATTTCCAACAGGGC 59.046 43.478 0.00 0.00 36.21 5.19
4432 7214 6.530019 AAACTGCTTATATTTCCAACAGGG 57.470 37.500 0.00 0.00 38.37 4.45
4433 7215 7.480810 GGTAAACTGCTTATATTTCCAACAGG 58.519 38.462 0.00 0.00 0.00 4.00
4434 7216 7.065324 TCGGTAAACTGCTTATATTTCCAACAG 59.935 37.037 0.00 0.00 0.00 3.16
4435 7217 6.879993 TCGGTAAACTGCTTATATTTCCAACA 59.120 34.615 0.00 0.00 0.00 3.33
4436 7218 7.311364 TCGGTAAACTGCTTATATTTCCAAC 57.689 36.000 0.00 0.00 0.00 3.77
4437 7219 7.925043 TTCGGTAAACTGCTTATATTTCCAA 57.075 32.000 0.00 0.00 0.00 3.53
4438 7220 9.616156 TTATTCGGTAAACTGCTTATATTTCCA 57.384 29.630 0.00 0.00 0.00 3.53
4472 7254 9.601217 AGTCGTGCTTTATCTAATATTTCTGTT 57.399 29.630 0.00 0.00 0.00 3.16
4484 7266 9.900710 CATTTCTATACTAGTCGTGCTTTATCT 57.099 33.333 0.00 0.00 0.00 1.98
4485 7267 9.894783 TCATTTCTATACTAGTCGTGCTTTATC 57.105 33.333 0.00 0.00 0.00 1.75
4502 7284 8.892723 TCGCATGACTTGTTTTATCATTTCTAT 58.107 29.630 0.00 0.00 30.58 1.98
4503 7285 8.262715 TCGCATGACTTGTTTTATCATTTCTA 57.737 30.769 0.00 0.00 30.58 2.10
4504 7286 7.144722 TCGCATGACTTGTTTTATCATTTCT 57.855 32.000 0.00 0.00 30.58 2.52
4505 7287 7.975866 ATCGCATGACTTGTTTTATCATTTC 57.024 32.000 0.00 0.00 30.58 2.17
4506 7288 8.649841 CAAATCGCATGACTTGTTTTATCATTT 58.350 29.630 0.00 0.00 30.58 2.32
4507 7289 8.028354 TCAAATCGCATGACTTGTTTTATCATT 58.972 29.630 0.00 0.00 33.23 2.57
4508 7290 7.485913 GTCAAATCGCATGACTTGTTTTATCAT 59.514 33.333 0.00 0.00 43.03 2.45
4509 7291 6.801377 GTCAAATCGCATGACTTGTTTTATCA 59.199 34.615 0.00 0.00 43.03 2.15
4510 7292 6.801377 TGTCAAATCGCATGACTTGTTTTATC 59.199 34.615 13.61 0.00 45.81 1.75
4511 7293 6.676950 TGTCAAATCGCATGACTTGTTTTAT 58.323 32.000 13.61 0.00 45.81 1.40
4512 7294 6.066054 TGTCAAATCGCATGACTTGTTTTA 57.934 33.333 13.61 0.00 45.81 1.52
4513 7295 4.930963 TGTCAAATCGCATGACTTGTTTT 58.069 34.783 13.61 0.00 45.81 2.43
4514 7296 4.566545 TGTCAAATCGCATGACTTGTTT 57.433 36.364 13.61 0.00 45.81 2.83
4515 7297 4.566545 TTGTCAAATCGCATGACTTGTT 57.433 36.364 13.61 0.00 45.81 2.83
4516 7298 4.566545 TTTGTCAAATCGCATGACTTGT 57.433 36.364 13.61 0.00 45.81 3.16
4517 7299 6.545508 TCTATTTGTCAAATCGCATGACTTG 58.454 36.000 14.07 0.00 45.81 3.16
4518 7300 6.741992 TCTATTTGTCAAATCGCATGACTT 57.258 33.333 14.07 0.00 45.81 3.01
4519 7301 6.183360 CCTTCTATTTGTCAAATCGCATGACT 60.183 38.462 14.07 0.00 45.81 3.41
4520 7302 5.967674 CCTTCTATTTGTCAAATCGCATGAC 59.032 40.000 14.07 7.76 45.82 3.06
4521 7303 5.647658 ACCTTCTATTTGTCAAATCGCATGA 59.352 36.000 14.07 4.46 32.38 3.07
4522 7304 5.883661 ACCTTCTATTTGTCAAATCGCATG 58.116 37.500 14.07 5.11 32.38 4.06
4523 7305 7.624360 TTACCTTCTATTTGTCAAATCGCAT 57.376 32.000 14.07 0.00 32.38 4.73
4524 7306 7.041030 TGTTTACCTTCTATTTGTCAAATCGCA 60.041 33.333 14.07 0.00 32.38 5.10
4525 7307 7.302524 TGTTTACCTTCTATTTGTCAAATCGC 58.697 34.615 14.07 0.00 32.38 4.58
4526 7308 9.113876 GTTGTTTACCTTCTATTTGTCAAATCG 57.886 33.333 14.07 8.62 32.38 3.34
4527 7309 9.959749 TGTTGTTTACCTTCTATTTGTCAAATC 57.040 29.630 14.07 0.00 32.38 2.17
4529 7311 9.959749 GATGTTGTTTACCTTCTATTTGTCAAA 57.040 29.630 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.