Multiple sequence alignment - TraesCS4A01G111900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G111900 chr4A 100.000 4546 0 0 1 4546 136802994 136798449 0.000000e+00 8395
1 TraesCS4A01G111900 chr4A 96.403 139 5 0 4274 4412 96276656 96276518 3.540000e-56 230
2 TraesCS4A01G111900 chr4A 94.891 137 7 0 4274 4410 549920718 549920582 9.910000e-52 215
3 TraesCS4A01G111900 chr4B 91.095 3369 163 59 670 3999 414792697 414795967 0.000000e+00 4433
4 TraesCS4A01G111900 chr4B 89.594 394 19 8 254 642 414792257 414792633 8.850000e-132 481
5 TraesCS4A01G111900 chr4B 91.815 281 15 6 3999 4271 414796006 414796286 7.130000e-103 385
6 TraesCS4A01G111900 chr4B 88.350 206 15 7 23 223 414792063 414792264 5.880000e-59 239
7 TraesCS4A01G111900 chr4D 91.753 2716 114 49 1588 4269 336533262 336535901 0.000000e+00 3674
8 TraesCS4A01G111900 chr4D 88.980 1216 50 25 253 1430 336531935 336533104 0.000000e+00 1426
9 TraesCS4A01G111900 chr4D 94.022 184 9 2 33 214 336529149 336529332 1.250000e-70 278
10 TraesCS4A01G111900 chr4D 93.548 93 6 0 4411 4503 312572112 312572204 6.130000e-29 139
11 TraesCS4A01G111900 chr2A 96.403 139 5 0 4274 4412 636591029 636590891 3.540000e-56 230
12 TraesCS4A01G111900 chr2A 93.333 150 9 1 4263 4412 737292500 737292648 2.130000e-53 220
13 TraesCS4A01G111900 chr2A 94.245 139 7 1 4274 4412 735967422 735967285 1.280000e-50 211
14 TraesCS4A01G111900 chr3A 94.444 144 8 0 4264 4407 29033368 29033511 5.920000e-54 222
15 TraesCS4A01G111900 chr2B 94.964 139 7 0 4274 4412 19843008 19842870 7.660000e-53 219
16 TraesCS4A01G111900 chr1A 94.964 139 7 0 4274 4412 546317393 546317255 7.660000e-53 219
17 TraesCS4A01G111900 chr1A 94.245 139 8 0 4274 4412 544196713 544196851 3.560000e-51 213
18 TraesCS4A01G111900 chr1A 93.478 92 6 0 4411 4502 451849093 451849002 2.210000e-28 137
19 TraesCS4A01G111900 chr5D 94.505 91 4 1 4412 4502 498479451 498479540 6.130000e-29 139
20 TraesCS4A01G111900 chr5D 93.333 90 6 0 4411 4500 456605240 456605329 2.850000e-27 134
21 TraesCS4A01G111900 chr6D 92.391 92 7 0 4411 4502 294098221 294098312 1.030000e-26 132
22 TraesCS4A01G111900 chr7A 92.308 91 7 0 4411 4501 126114563 126114653 3.690000e-26 130
23 TraesCS4A01G111900 chr3D 91.489 94 6 1 4411 4502 171111479 171111572 1.330000e-25 128
24 TraesCS4A01G111900 chr3D 89.109 101 9 2 4411 4509 482349645 482349545 1.720000e-24 124
25 TraesCS4A01G111900 chr1D 92.222 90 7 0 4411 4500 355704860 355704771 1.330000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G111900 chr4A 136798449 136802994 4545 True 8395.000000 8395 100.0000 1 4546 1 chr4A.!!$R2 4545
1 TraesCS4A01G111900 chr4B 414792063 414796286 4223 False 1384.500000 4433 90.2135 23 4271 4 chr4B.!!$F1 4248
2 TraesCS4A01G111900 chr4D 336529149 336535901 6752 False 1792.666667 3674 91.5850 33 4269 3 chr4D.!!$F2 4236

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
28 29 0.179073 AGACAGACACACACACAGGC 60.179 55.0 0.0 0.0 0.00 4.85 F
1224 3856 0.179215 CGGCATTCAAGAACACGCTC 60.179 55.0 0.0 0.0 0.00 5.03 F
2090 4770 0.035439 TGTTTGATCCCGAGGAAGGC 60.035 55.0 0.0 0.0 34.34 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1447 4081 0.747644 TGGTATGTGGCCGCTTGATG 60.748 55.0 18.96 0.0 0.0 3.07 R
2321 5001 0.168788 CGTAAGCACTGCCCATGTTG 59.831 55.0 0.00 0.0 0.0 3.33 R
3714 6428 0.388907 CATTGGGCAAGAAACGGCAG 60.389 55.0 0.00 0.0 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.558931 AATGGACAAGACAGACACACA 57.441 42.857 0.00 0.00 0.00 3.72
22 23 2.309528 TGGACAAGACAGACACACAC 57.690 50.000 0.00 0.00 0.00 3.82
23 24 1.552792 TGGACAAGACAGACACACACA 59.447 47.619 0.00 0.00 0.00 3.72
24 25 1.933853 GGACAAGACAGACACACACAC 59.066 52.381 0.00 0.00 0.00 3.82
25 26 2.616960 GACAAGACAGACACACACACA 58.383 47.619 0.00 0.00 0.00 3.72
26 27 2.604914 GACAAGACAGACACACACACAG 59.395 50.000 0.00 0.00 0.00 3.66
27 28 1.935873 CAAGACAGACACACACACAGG 59.064 52.381 0.00 0.00 0.00 4.00
28 29 0.179073 AGACAGACACACACACAGGC 60.179 55.000 0.00 0.00 0.00 4.85
29 30 0.461870 GACAGACACACACACAGGCA 60.462 55.000 0.00 0.00 0.00 4.75
30 31 0.462581 ACAGACACACACACAGGCAG 60.463 55.000 0.00 0.00 0.00 4.85
31 32 1.146930 AGACACACACACAGGCAGG 59.853 57.895 0.00 0.00 0.00 4.85
77 78 5.614324 TCCTTTCTCGTGATACCATCAAT 57.386 39.130 0.00 0.00 41.69 2.57
92 93 1.093972 TCAATGTATTGCCACAGCCG 58.906 50.000 0.00 0.00 38.69 5.52
118 122 5.069648 GGGAGATGAAATGAAAGGAAATCCC 59.930 44.000 0.00 0.00 36.42 3.85
178 183 1.529865 GCAGATTATTTACCGCCGTCC 59.470 52.381 0.00 0.00 0.00 4.79
182 187 0.817013 TTATTTACCGCCGTCCGTCT 59.183 50.000 0.00 0.00 34.38 4.18
198 203 2.482326 TCTCTCTCGAGAATGCGCA 58.518 52.632 14.96 14.96 43.10 6.09
223 228 1.890489 TGTCCAAGCGTCTAGTGCTAA 59.110 47.619 11.65 0.70 43.14 3.09
225 230 3.117046 GTCCAAGCGTCTAGTGCTAATC 58.883 50.000 11.65 2.23 43.14 1.75
227 232 2.860735 CCAAGCGTCTAGTGCTAATCAC 59.139 50.000 11.65 0.00 43.14 3.06
228 233 2.860735 CAAGCGTCTAGTGCTAATCACC 59.139 50.000 11.65 0.00 46.81 4.02
229 234 1.409427 AGCGTCTAGTGCTAATCACCC 59.591 52.381 9.94 0.00 46.81 4.61
234 239 4.381612 CGTCTAGTGCTAATCACCCTTTCA 60.382 45.833 0.00 0.00 46.81 2.69
243 248 6.093404 GCTAATCACCCTTTCAAAGCTAAAC 58.907 40.000 0.00 0.00 0.00 2.01
244 249 6.294508 GCTAATCACCCTTTCAAAGCTAAACA 60.295 38.462 0.00 0.00 0.00 2.83
250 255 7.940137 TCACCCTTTCAAAGCTAAACATAGTTA 59.060 33.333 0.00 0.00 0.00 2.24
284 2869 2.874701 CCCTTGCATACAGATACAGTGC 59.125 50.000 0.00 0.00 36.39 4.40
292 2877 1.886542 ACAGATACAGTGCGTGAGACA 59.113 47.619 0.00 0.00 0.00 3.41
407 2992 3.966543 CACCAAACCCGCCCTCCT 61.967 66.667 0.00 0.00 0.00 3.69
412 2997 1.623163 CAAACCCGCCCTCCTTAAAA 58.377 50.000 0.00 0.00 0.00 1.52
418 3003 2.812011 CCCGCCCTCCTTAAAATAATCG 59.188 50.000 0.00 0.00 0.00 3.34
422 3007 2.225727 CCCTCCTTAAAATAATCGCGCC 59.774 50.000 0.00 0.00 0.00 6.53
480 3065 0.686112 CTCCACCTCCACCTCTCTCC 60.686 65.000 0.00 0.00 0.00 3.71
521 3113 3.537388 GAGCCCCTCTCTCTCTGC 58.463 66.667 0.00 0.00 38.78 4.26
522 3114 1.076044 GAGCCCCTCTCTCTCTGCT 60.076 63.158 0.00 0.00 38.78 4.24
523 3115 1.076044 AGCCCCTCTCTCTCTGCTC 60.076 63.158 0.00 0.00 0.00 4.26
524 3116 1.076044 GCCCCTCTCTCTCTGCTCT 60.076 63.158 0.00 0.00 0.00 4.09
525 3117 1.394266 GCCCCTCTCTCTCTGCTCTG 61.394 65.000 0.00 0.00 0.00 3.35
526 3118 1.394266 CCCCTCTCTCTCTGCTCTGC 61.394 65.000 0.00 0.00 0.00 4.26
527 3119 0.396139 CCCTCTCTCTCTGCTCTGCT 60.396 60.000 0.00 0.00 0.00 4.24
528 3120 1.027357 CCTCTCTCTCTGCTCTGCTC 58.973 60.000 0.00 0.00 0.00 4.26
529 3121 1.409241 CCTCTCTCTCTGCTCTGCTCT 60.409 57.143 0.00 0.00 0.00 4.09
530 3122 1.674441 CTCTCTCTCTGCTCTGCTCTG 59.326 57.143 0.00 0.00 0.00 3.35
556 3148 1.061131 CTGCTACAAAAGACGGCATCG 59.939 52.381 0.00 0.00 43.02 3.84
595 3188 1.021920 GCTTGTCCGGCTCCTTTCTC 61.022 60.000 0.00 0.00 0.00 2.87
597 3190 1.838073 TTGTCCGGCTCCTTTCTCCC 61.838 60.000 0.00 0.00 0.00 4.30
600 3193 2.689034 CGGCTCCTTTCTCCCCCT 60.689 66.667 0.00 0.00 0.00 4.79
601 3194 2.736826 CGGCTCCTTTCTCCCCCTC 61.737 68.421 0.00 0.00 0.00 4.30
602 3195 2.379459 GGCTCCTTTCTCCCCCTCC 61.379 68.421 0.00 0.00 0.00 4.30
603 3196 1.616628 GCTCCTTTCTCCCCCTCCA 60.617 63.158 0.00 0.00 0.00 3.86
604 3197 1.631071 GCTCCTTTCTCCCCCTCCAG 61.631 65.000 0.00 0.00 0.00 3.86
629 3222 2.515523 CCATTCCAGCTGAGCCGG 60.516 66.667 17.39 0.00 0.00 6.13
677 3306 1.137872 GGAGGAAGCATCACATCTCGT 59.862 52.381 0.00 0.00 0.00 4.18
696 3325 2.806945 TGATCCCCTCACAAATCCAC 57.193 50.000 0.00 0.00 0.00 4.02
791 3423 1.181786 AGCAGTCTCCAGTCTAGCAC 58.818 55.000 0.00 0.00 0.00 4.40
793 3425 0.453793 CAGTCTCCAGTCTAGCACCG 59.546 60.000 0.00 0.00 0.00 4.94
796 3428 1.153745 CTCCAGTCTAGCACCGCAC 60.154 63.158 0.00 0.00 0.00 5.34
817 3449 2.892852 CCAAGAACCAAGAAATCCAGCA 59.107 45.455 0.00 0.00 0.00 4.41
818 3450 3.057033 CCAAGAACCAAGAAATCCAGCAG 60.057 47.826 0.00 0.00 0.00 4.24
849 3481 1.459450 TCCATCCTTTTTGCGCCTAC 58.541 50.000 4.18 0.00 0.00 3.18
853 3485 1.808411 TCCTTTTTGCGCCTACTCTG 58.192 50.000 4.18 0.00 0.00 3.35
890 3522 1.940613 ACAAGTTGCCGAGACAAGAAC 59.059 47.619 1.81 0.00 0.00 3.01
933 3565 2.182537 CCTCCAGCAATTTGGCGC 59.817 61.111 0.00 0.00 38.16 6.53
939 3571 1.678635 AGCAATTTGGCGCCAGCTA 60.679 52.632 32.43 21.66 44.37 3.32
1086 3718 2.819984 TTCTCATGAAGCCCCACGCC 62.820 60.000 0.00 0.00 38.78 5.68
1124 3756 4.363990 CACCTGCGCTGACTCGGT 62.364 66.667 16.65 6.09 0.00 4.69
1224 3856 0.179215 CGGCATTCAAGAACACGCTC 60.179 55.000 0.00 0.00 0.00 5.03
1414 4046 4.094684 GGTGAGCGACCATCTTCG 57.905 61.111 3.24 0.00 45.34 3.79
1424 4058 1.734465 GACCATCTTCGCAAGTTCTGG 59.266 52.381 0.00 0.00 39.48 3.86
1442 4076 3.363341 TGGAACAGACGAAATTTTGCC 57.637 42.857 5.27 0.00 0.00 4.52
1443 4077 2.287308 TGGAACAGACGAAATTTTGCCG 60.287 45.455 5.27 0.83 0.00 5.69
1445 4079 0.385473 ACAGACGAAATTTTGCCGCG 60.385 50.000 0.00 0.00 0.00 6.46
1446 4080 1.065031 CAGACGAAATTTTGCCGCGG 61.065 55.000 24.05 24.05 0.00 6.46
1447 4081 2.430075 ACGAAATTTTGCCGCGGC 60.430 55.556 42.35 42.35 42.35 6.53
1494 4168 7.588497 AAACTGCTTCCTGTTTCTAATTTCT 57.412 32.000 0.00 0.00 38.29 2.52
1495 4169 8.691661 AAACTGCTTCCTGTTTCTAATTTCTA 57.308 30.769 0.00 0.00 38.29 2.10
1551 4227 1.667724 CCAGAGGTGCTAAATCAAGCG 59.332 52.381 0.00 0.00 45.85 4.68
1582 4262 8.945481 TTTATTTATTTGGATGTGCTGAATGG 57.055 30.769 0.00 0.00 0.00 3.16
1583 4263 5.999205 TTTATTTGGATGTGCTGAATGGT 57.001 34.783 0.00 0.00 0.00 3.55
1584 4264 5.999205 TTATTTGGATGTGCTGAATGGTT 57.001 34.783 0.00 0.00 0.00 3.67
1585 4265 3.940209 TTTGGATGTGCTGAATGGTTC 57.060 42.857 0.00 0.00 0.00 3.62
1586 4266 1.838112 TGGATGTGCTGAATGGTTCC 58.162 50.000 0.00 0.00 0.00 3.62
1625 4305 1.565156 CTCGGTTTTGCAGCTACGCA 61.565 55.000 0.00 0.00 41.03 5.24
1787 4467 1.006922 GCTCACCTTTGCCTGCAAC 60.007 57.895 3.64 0.00 35.46 4.17
1994 4674 2.032681 AAGAACAGTGGAGGCGGC 59.967 61.111 0.00 0.00 0.00 6.53
2048 4728 0.813210 GCTGCCAGGAAGAAGGATCG 60.813 60.000 0.00 0.00 0.00 3.69
2087 4767 1.912731 TCCATGTTTGATCCCGAGGAA 59.087 47.619 0.00 0.00 34.34 3.36
2090 4770 0.035439 TGTTTGATCCCGAGGAAGGC 60.035 55.000 0.00 0.00 34.34 4.35
2095 4775 3.332393 ATCCCGAGGAAGGCCAGGA 62.332 63.158 5.01 0.00 36.64 3.86
2114 4794 2.641305 GATCTTGACAATGAGCCTGCT 58.359 47.619 0.00 0.00 0.00 4.24
2156 4836 2.771943 TCCCCTACCACAATCATCAGTC 59.228 50.000 0.00 0.00 0.00 3.51
2282 4962 1.186267 ACTCGTTCAGGGGAGTCCAC 61.186 60.000 12.30 7.63 39.18 4.02
2321 5001 3.556213 GGGTTAACAAAATGAGGGGTTGC 60.556 47.826 8.10 0.00 0.00 4.17
2384 5064 2.037136 GCAACTGATGAGCTGCGGT 61.037 57.895 0.00 0.00 0.00 5.68
2423 5103 1.466856 TCCATGGCATCTGCTTCAAC 58.533 50.000 6.96 0.00 41.70 3.18
2471 5151 1.072159 GATGATGGAAGGGGGCTCG 59.928 63.158 0.00 0.00 0.00 5.03
2505 5185 6.974932 TCATTATGCAGAGAAACAAGAGAC 57.025 37.500 0.00 0.00 0.00 3.36
2543 5223 5.295292 CACGATTAGGATTGCTCTTGATGTT 59.705 40.000 0.00 0.00 0.00 2.71
2546 5226 3.083122 AGGATTGCTCTTGATGTTGCT 57.917 42.857 0.00 0.00 0.00 3.91
2549 5229 3.380637 GGATTGCTCTTGATGTTGCTGAT 59.619 43.478 0.00 0.00 0.00 2.90
2582 5262 3.434566 GAACGGCTACGGCATTGCG 62.435 63.158 1.91 0.85 46.48 4.85
2612 5292 1.927174 CTTAACGCACGAAGGATCCTG 59.073 52.381 17.02 6.25 0.00 3.86
2699 5379 3.546417 GCGAGGTTACTGAGTATGAGACG 60.546 52.174 0.00 0.00 0.00 4.18
2788 5468 6.734104 TCTAGAAATGCTCTTTCTGAAAGC 57.266 37.500 22.25 14.69 38.98 3.51
2789 5469 4.416505 AGAAATGCTCTTTCTGAAAGCG 57.583 40.909 22.25 18.19 38.90 4.68
2798 5478 5.388994 GCTCTTTCTGAAAGCGAGTTTAGTC 60.389 44.000 22.25 7.84 38.39 2.59
2815 5495 1.912043 AGTCCCAGCATGCTAGAAGTT 59.088 47.619 22.19 6.91 31.97 2.66
2816 5496 2.093235 AGTCCCAGCATGCTAGAAGTTC 60.093 50.000 22.19 8.32 31.97 3.01
2817 5497 2.093235 GTCCCAGCATGCTAGAAGTTCT 60.093 50.000 22.19 10.87 31.97 3.01
2818 5498 2.573462 TCCCAGCATGCTAGAAGTTCTT 59.427 45.455 22.19 0.00 31.97 2.52
2819 5499 3.009473 TCCCAGCATGCTAGAAGTTCTTT 59.991 43.478 22.19 0.00 31.97 2.52
2830 5510 7.217200 TGCTAGAAGTTCTTTCTTTGAGCTAA 58.783 34.615 11.40 0.00 43.68 3.09
2889 5569 4.783055 TCAAGTAACCCAGTAAAACAGCA 58.217 39.130 0.00 0.00 0.00 4.41
2895 5575 4.320608 ACCCAGTAAAACAGCAACATTG 57.679 40.909 0.00 0.00 0.00 2.82
2920 5604 9.605955 TGACGATGAAACATGTATTTTTACTTG 57.394 29.630 0.00 0.00 0.00 3.16
2929 5613 8.635765 ACATGTATTTTTACTTGTCATCCTGT 57.364 30.769 0.00 0.00 34.53 4.00
2982 5666 2.089980 AGAACACTGCATCATCTTGCC 58.910 47.619 0.00 0.00 42.06 4.52
2983 5667 2.089980 GAACACTGCATCATCTTGCCT 58.910 47.619 0.00 0.00 42.06 4.75
2984 5668 2.211250 ACACTGCATCATCTTGCCTT 57.789 45.000 0.00 0.00 42.06 4.35
2985 5669 2.522185 ACACTGCATCATCTTGCCTTT 58.478 42.857 0.00 0.00 42.06 3.11
2986 5670 2.895404 ACACTGCATCATCTTGCCTTTT 59.105 40.909 0.00 0.00 42.06 2.27
2987 5671 4.081406 ACACTGCATCATCTTGCCTTTTA 58.919 39.130 0.00 0.00 42.06 1.52
2988 5672 4.523943 ACACTGCATCATCTTGCCTTTTAA 59.476 37.500 0.00 0.00 42.06 1.52
3002 5686 8.246180 TCTTGCCTTTTAATTTTATGAGCAGAG 58.754 33.333 0.00 0.00 0.00 3.35
3023 5707 8.947940 GCAGAGCATAATAAAACTTCAAATACG 58.052 33.333 0.00 0.00 0.00 3.06
3037 5722 9.796120 AACTTCAAATACGAAATGTGAAAGAAA 57.204 25.926 8.69 0.00 0.00 2.52
3067 5752 3.603532 TGATCTGACCAACTTGATGCTC 58.396 45.455 0.00 0.00 0.00 4.26
3078 5763 5.007430 CCAACTTGATGCTCTTATGCACTAG 59.993 44.000 0.00 0.00 46.33 2.57
3101 5786 0.682209 AGCCTGCCAATGCCAGTTAG 60.682 55.000 0.00 0.00 36.33 2.34
3102 5787 0.967380 GCCTGCCAATGCCAGTTAGT 60.967 55.000 0.00 0.00 36.33 2.24
3103 5788 1.681780 GCCTGCCAATGCCAGTTAGTA 60.682 52.381 0.00 0.00 36.33 1.82
3104 5789 2.292267 CCTGCCAATGCCAGTTAGTAG 58.708 52.381 0.00 0.00 36.33 2.57
3105 5790 2.356125 CCTGCCAATGCCAGTTAGTAGT 60.356 50.000 0.00 0.00 36.33 2.73
3109 5794 4.712829 TGCCAATGCCAGTTAGTAGTACTA 59.287 41.667 5.90 5.90 36.33 1.82
3112 5797 6.239345 GCCAATGCCAGTTAGTAGTACTATCT 60.239 42.308 10.82 12.11 32.52 1.98
3122 5807 7.338957 AGTTAGTAGTACTATCTTGTGTCCACC 59.661 40.741 10.82 0.00 29.03 4.61
3125 5810 4.164981 AGTACTATCTTGTGTCCACCCAA 58.835 43.478 0.00 0.00 0.00 4.12
3127 5812 3.955471 ACTATCTTGTGTCCACCCAATG 58.045 45.455 0.00 0.00 0.00 2.82
3156 5841 5.269189 GGAATCCATCCTTTTAACCCTGAA 58.731 41.667 0.00 0.00 45.56 3.02
3173 5858 4.273235 CCCTGAAAAACCAATTTTGTGCTC 59.727 41.667 0.00 0.00 41.27 4.26
3185 5870 6.404734 CCAATTTTGTGCTCCTATTGTACTCC 60.405 42.308 0.00 0.00 0.00 3.85
3197 5882 8.798975 TCCTATTGTACTCCTTATCATCCTTT 57.201 34.615 0.00 0.00 0.00 3.11
3198 5883 9.225682 TCCTATTGTACTCCTTATCATCCTTTT 57.774 33.333 0.00 0.00 0.00 2.27
3218 5921 9.174166 TCCTTTTAAGCTTATGTTATCTGAACC 57.826 33.333 7.08 0.00 0.00 3.62
3233 5936 8.573035 GTTATCTGAACCTATCCTTACTGAGAG 58.427 40.741 0.00 0.00 0.00 3.20
3234 5937 5.450453 TCTGAACCTATCCTTACTGAGAGG 58.550 45.833 0.38 0.38 46.85 3.69
3238 5941 3.917300 CCTATCCTTACTGAGAGGTGGT 58.083 50.000 0.00 0.00 38.63 4.16
3240 5943 5.455872 CCTATCCTTACTGAGAGGTGGTTA 58.544 45.833 0.00 0.00 38.63 2.85
3241 5944 5.302313 CCTATCCTTACTGAGAGGTGGTTAC 59.698 48.000 0.00 0.00 38.63 2.50
3242 5945 4.399483 TCCTTACTGAGAGGTGGTTACT 57.601 45.455 0.00 0.00 35.71 2.24
3243 5946 4.748701 TCCTTACTGAGAGGTGGTTACTT 58.251 43.478 0.00 0.00 35.71 2.24
3244 5947 5.895807 TCCTTACTGAGAGGTGGTTACTTA 58.104 41.667 0.00 0.00 35.71 2.24
3245 5948 6.317312 TCCTTACTGAGAGGTGGTTACTTAA 58.683 40.000 0.00 0.00 35.71 1.85
3323 6026 1.411493 GCAACGTCTACAGCTACGGC 61.411 60.000 11.18 2.55 43.25 5.68
3332 6035 0.391661 ACAGCTACGGCATGGTTCTG 60.392 55.000 0.00 0.00 41.70 3.02
3488 6191 1.034292 GCTGGGACAATTGCCCTCTC 61.034 60.000 27.53 17.33 46.19 3.20
3491 6194 1.146774 TGGGACAATTGCCCTCTCAAA 59.853 47.619 27.53 12.01 46.19 2.69
3537 6240 1.905354 ACCCTGCAAAAGCAGAGCC 60.905 57.895 18.23 0.00 39.96 4.70
3669 6379 6.275494 AGACTGCATATGAGATGAGATGAG 57.725 41.667 6.97 0.00 0.00 2.90
3671 6381 6.666113 AGACTGCATATGAGATGAGATGAGAT 59.334 38.462 6.97 0.00 0.00 2.75
3672 6382 6.635755 ACTGCATATGAGATGAGATGAGATG 58.364 40.000 6.97 0.00 0.00 2.90
3673 6383 6.437793 ACTGCATATGAGATGAGATGAGATGA 59.562 38.462 6.97 0.00 0.00 2.92
3674 6384 6.868622 TGCATATGAGATGAGATGAGATGAG 58.131 40.000 6.97 0.00 0.00 2.90
3714 6428 5.811613 TGTGCAAAGGCTTGATATATTTTGC 59.188 36.000 17.54 17.54 46.26 3.68
3719 6433 3.254166 AGGCTTGATATATTTTGCTGCCG 59.746 43.478 0.00 0.00 42.25 5.69
3773 6487 4.262506 GCTATGTTAGTAGGTCCCCACATC 60.263 50.000 0.00 0.00 0.00 3.06
3774 6488 2.474112 TGTTAGTAGGTCCCCACATCC 58.526 52.381 0.00 0.00 0.00 3.51
3775 6489 2.225675 TGTTAGTAGGTCCCCACATCCA 60.226 50.000 0.00 0.00 0.00 3.41
3776 6490 2.169978 GTTAGTAGGTCCCCACATCCAC 59.830 54.545 0.00 0.00 0.00 4.02
3777 6491 0.118346 AGTAGGTCCCCACATCCACA 59.882 55.000 0.00 0.00 0.00 4.17
3778 6492 1.213296 GTAGGTCCCCACATCCACAT 58.787 55.000 0.00 0.00 0.00 3.21
3779 6493 1.134098 GTAGGTCCCCACATCCACATG 60.134 57.143 0.00 0.00 35.92 3.21
3780 6494 0.846427 AGGTCCCCACATCCACATGT 60.846 55.000 0.00 0.00 44.72 3.21
3781 6495 0.916086 GGTCCCCACATCCACATGTA 59.084 55.000 0.00 0.00 41.69 2.29
3805 6519 7.432350 AGAGTGAGTGAGATGAAAAATCAAC 57.568 36.000 0.00 0.00 0.00 3.18
3822 6536 7.463961 AAATCAACAGAGAGCATCAAAGATT 57.536 32.000 0.00 0.00 37.82 2.40
3823 6537 7.463961 AATCAACAGAGAGCATCAAAGATTT 57.536 32.000 0.00 0.00 37.82 2.17
3824 6538 8.571461 AATCAACAGAGAGCATCAAAGATTTA 57.429 30.769 0.00 0.00 37.82 1.40
3825 6539 7.606858 TCAACAGAGAGCATCAAAGATTTAG 57.393 36.000 0.00 0.00 37.82 1.85
3826 6540 7.164122 TCAACAGAGAGCATCAAAGATTTAGT 58.836 34.615 0.00 0.00 37.82 2.24
3832 6546 7.009568 AGAGCATCAAAGATTTAGTTTAGCG 57.990 36.000 0.00 0.00 37.82 4.26
3851 6565 2.095161 GCGGACGGATCTATAGGACAAG 60.095 54.545 0.00 0.00 0.00 3.16
3881 6595 2.621556 TTTTTGCTTGCCCTCCCTAT 57.378 45.000 0.00 0.00 0.00 2.57
3887 6601 1.280421 GCTTGCCCTCCCTATCCTATG 59.720 57.143 0.00 0.00 0.00 2.23
3915 6629 1.937223 CCACAACGAACTAACTGCACA 59.063 47.619 0.00 0.00 0.00 4.57
3916 6630 2.032894 CCACAACGAACTAACTGCACAG 60.033 50.000 0.00 0.00 0.00 3.66
3917 6631 2.607635 CACAACGAACTAACTGCACAGT 59.392 45.455 0.00 0.00 44.94 3.55
3918 6632 2.607635 ACAACGAACTAACTGCACAGTG 59.392 45.455 3.64 0.00 41.58 3.66
3962 6676 3.258228 TTGGACGCAGGCTGCTCAT 62.258 57.895 34.17 20.97 42.25 2.90
3963 6677 2.894387 GGACGCAGGCTGCTCATC 60.894 66.667 34.17 26.60 42.25 2.92
3964 6678 2.186384 GACGCAGGCTGCTCATCT 59.814 61.111 34.17 13.22 42.25 2.90
3965 6679 1.882167 GACGCAGGCTGCTCATCTC 60.882 63.158 34.17 17.42 42.25 2.75
3966 6680 2.186125 CGCAGGCTGCTCATCTCA 59.814 61.111 34.17 0.00 42.25 3.27
4136 6902 3.241553 CGATTAATCAGTGACTGAGCGTG 59.758 47.826 20.90 4.90 44.08 5.34
4150 6916 3.502455 CGTGATGCATGTGCGGCT 61.502 61.111 2.46 0.00 45.83 5.52
4209 6977 0.037975 ACGGTGCAAACCCTACGTAG 60.038 55.000 15.92 15.92 32.30 3.51
4211 6979 1.202114 CGGTGCAAACCCTACGTAGTA 59.798 52.381 20.73 0.00 45.11 1.82
4250 7020 3.625764 TCTTGTATGCGGCCAAATAAGAC 59.374 43.478 2.24 0.00 0.00 3.01
4271 7041 4.962693 ACGATGATGCTTTCTCTTTTTCG 58.037 39.130 0.00 0.00 0.00 3.46
4272 7042 4.452455 ACGATGATGCTTTCTCTTTTTCGT 59.548 37.500 0.00 0.00 0.00 3.85
4273 7043 4.785055 CGATGATGCTTTCTCTTTTTCGTG 59.215 41.667 0.00 0.00 0.00 4.35
4274 7044 3.888934 TGATGCTTTCTCTTTTTCGTGC 58.111 40.909 0.00 0.00 0.00 5.34
4275 7045 2.774439 TGCTTTCTCTTTTTCGTGCC 57.226 45.000 0.00 0.00 0.00 5.01
4276 7046 2.297701 TGCTTTCTCTTTTTCGTGCCT 58.702 42.857 0.00 0.00 0.00 4.75
4277 7047 2.290641 TGCTTTCTCTTTTTCGTGCCTC 59.709 45.455 0.00 0.00 0.00 4.70
4278 7048 2.550180 GCTTTCTCTTTTTCGTGCCTCT 59.450 45.455 0.00 0.00 0.00 3.69
4279 7049 3.003793 GCTTTCTCTTTTTCGTGCCTCTT 59.996 43.478 0.00 0.00 0.00 2.85
4280 7050 4.498177 GCTTTCTCTTTTTCGTGCCTCTTT 60.498 41.667 0.00 0.00 0.00 2.52
4281 7051 4.552166 TTCTCTTTTTCGTGCCTCTTTG 57.448 40.909 0.00 0.00 0.00 2.77
4282 7052 3.804036 TCTCTTTTTCGTGCCTCTTTGA 58.196 40.909 0.00 0.00 0.00 2.69
4283 7053 4.389374 TCTCTTTTTCGTGCCTCTTTGAT 58.611 39.130 0.00 0.00 0.00 2.57
4284 7054 4.821805 TCTCTTTTTCGTGCCTCTTTGATT 59.178 37.500 0.00 0.00 0.00 2.57
4285 7055 5.049405 TCTCTTTTTCGTGCCTCTTTGATTC 60.049 40.000 0.00 0.00 0.00 2.52
4286 7056 3.536158 TTTTCGTGCCTCTTTGATTCG 57.464 42.857 0.00 0.00 0.00 3.34
4287 7057 0.796312 TTCGTGCCTCTTTGATTCGC 59.204 50.000 0.00 0.00 0.00 4.70
4288 7058 1.059369 CGTGCCTCTTTGATTCGCG 59.941 57.895 0.00 0.00 0.00 5.87
4289 7059 1.425428 GTGCCTCTTTGATTCGCGG 59.575 57.895 6.13 0.00 0.00 6.46
4290 7060 1.745115 TGCCTCTTTGATTCGCGGG 60.745 57.895 6.13 0.00 0.00 6.13
4291 7061 1.449601 GCCTCTTTGATTCGCGGGA 60.450 57.895 6.13 0.00 0.00 5.14
4292 7062 0.815615 GCCTCTTTGATTCGCGGGAT 60.816 55.000 6.13 0.00 0.00 3.85
4293 7063 1.668419 CCTCTTTGATTCGCGGGATT 58.332 50.000 6.13 0.00 0.00 3.01
4294 7064 1.331756 CCTCTTTGATTCGCGGGATTG 59.668 52.381 6.13 0.00 0.00 2.67
4295 7065 2.279741 CTCTTTGATTCGCGGGATTGA 58.720 47.619 6.13 0.00 0.00 2.57
4296 7066 2.677836 CTCTTTGATTCGCGGGATTGAA 59.322 45.455 6.13 0.00 0.00 2.69
4297 7067 3.078097 TCTTTGATTCGCGGGATTGAAA 58.922 40.909 6.13 5.94 0.00 2.69
4298 7068 3.504134 TCTTTGATTCGCGGGATTGAAAA 59.496 39.130 6.13 1.94 0.00 2.29
4299 7069 3.924918 TTGATTCGCGGGATTGAAAAA 57.075 38.095 6.13 0.00 0.00 1.94
4322 7092 9.981114 AAAAACACAGGAATAGGAAAAATGTAG 57.019 29.630 0.00 0.00 0.00 2.74
4323 7093 7.703058 AACACAGGAATAGGAAAAATGTAGG 57.297 36.000 0.00 0.00 0.00 3.18
4324 7094 7.027874 ACACAGGAATAGGAAAAATGTAGGA 57.972 36.000 0.00 0.00 0.00 2.94
4325 7095 7.643123 ACACAGGAATAGGAAAAATGTAGGAT 58.357 34.615 0.00 0.00 0.00 3.24
4326 7096 8.116026 ACACAGGAATAGGAAAAATGTAGGATT 58.884 33.333 0.00 0.00 0.00 3.01
4327 7097 8.408601 CACAGGAATAGGAAAAATGTAGGATTG 58.591 37.037 0.00 0.00 0.00 2.67
4328 7098 8.336235 ACAGGAATAGGAAAAATGTAGGATTGA 58.664 33.333 0.00 0.00 0.00 2.57
4329 7099 9.189156 CAGGAATAGGAAAAATGTAGGATTGAA 57.811 33.333 0.00 0.00 0.00 2.69
4330 7100 9.768215 AGGAATAGGAAAAATGTAGGATTGAAA 57.232 29.630 0.00 0.00 0.00 2.69
4335 7105 8.421249 AGGAAAAATGTAGGATTGAAATGACA 57.579 30.769 0.00 0.00 0.00 3.58
4336 7106 9.039165 AGGAAAAATGTAGGATTGAAATGACAT 57.961 29.630 0.00 0.00 0.00 3.06
4337 7107 9.090692 GGAAAAATGTAGGATTGAAATGACATG 57.909 33.333 0.00 0.00 0.00 3.21
4338 7108 8.483307 AAAAATGTAGGATTGAAATGACATGC 57.517 30.769 0.00 0.00 0.00 4.06
4339 7109 5.779529 ATGTAGGATTGAAATGACATGCC 57.220 39.130 0.00 0.00 0.00 4.40
4340 7110 3.953612 TGTAGGATTGAAATGACATGCCC 59.046 43.478 0.00 0.00 0.00 5.36
4341 7111 3.104519 AGGATTGAAATGACATGCCCA 57.895 42.857 0.00 0.00 0.00 5.36
4342 7112 3.649843 AGGATTGAAATGACATGCCCAT 58.350 40.909 0.00 0.00 0.00 4.00
4343 7113 4.035112 AGGATTGAAATGACATGCCCATT 58.965 39.130 7.80 7.80 35.92 3.16
4344 7114 4.124238 GGATTGAAATGACATGCCCATTG 58.876 43.478 12.81 0.00 34.75 2.82
4345 7115 3.613494 TTGAAATGACATGCCCATTGG 57.387 42.857 12.81 0.00 34.75 3.16
4346 7116 2.817665 TGAAATGACATGCCCATTGGA 58.182 42.857 3.62 2.95 34.75 3.53
4347 7117 3.376636 TGAAATGACATGCCCATTGGAT 58.623 40.909 3.62 0.82 34.75 3.41
4348 7118 3.775866 TGAAATGACATGCCCATTGGATT 59.224 39.130 3.62 0.00 34.75 3.01
4349 7119 4.141892 TGAAATGACATGCCCATTGGATTC 60.142 41.667 3.62 8.45 34.75 2.52
4350 7120 1.779221 TGACATGCCCATTGGATTCC 58.221 50.000 3.62 0.00 0.00 3.01
4351 7121 1.288633 TGACATGCCCATTGGATTCCT 59.711 47.619 3.62 0.00 0.00 3.36
4352 7122 2.513317 TGACATGCCCATTGGATTCCTA 59.487 45.455 3.62 0.00 0.00 2.94
4353 7123 3.140707 TGACATGCCCATTGGATTCCTAT 59.859 43.478 3.62 0.00 0.00 2.57
4354 7124 4.353489 TGACATGCCCATTGGATTCCTATA 59.647 41.667 3.62 0.00 0.00 1.31
4355 7125 4.927049 ACATGCCCATTGGATTCCTATAG 58.073 43.478 3.62 0.00 0.00 1.31
4356 7126 4.603171 ACATGCCCATTGGATTCCTATAGA 59.397 41.667 3.62 0.00 0.00 1.98
4357 7127 5.074929 ACATGCCCATTGGATTCCTATAGAA 59.925 40.000 3.62 0.00 39.32 2.10
4359 7129 6.218195 TGCCCATTGGATTCCTATAGAATT 57.782 37.500 3.62 0.00 45.52 2.17
4360 7130 6.623329 TGCCCATTGGATTCCTATAGAATTT 58.377 36.000 3.62 0.00 45.52 1.82
4361 7131 6.494491 TGCCCATTGGATTCCTATAGAATTTG 59.506 38.462 3.62 0.00 45.52 2.32
4362 7132 6.721208 GCCCATTGGATTCCTATAGAATTTGA 59.279 38.462 3.62 0.00 45.52 2.69
4363 7133 7.094032 GCCCATTGGATTCCTATAGAATTTGAG 60.094 40.741 3.62 0.00 45.52 3.02
4364 7134 7.946776 CCCATTGGATTCCTATAGAATTTGAGT 59.053 37.037 3.62 0.00 45.52 3.41
4365 7135 9.359653 CCATTGGATTCCTATAGAATTTGAGTT 57.640 33.333 0.00 0.00 45.52 3.01
4368 7138 9.753674 TTGGATTCCTATAGAATTTGAGTTTGT 57.246 29.630 0.00 0.00 45.52 2.83
4369 7139 9.753674 TGGATTCCTATAGAATTTGAGTTTGTT 57.246 29.630 0.00 0.00 45.52 2.83
4382 7152 9.814899 AATTTGAGTTTGTTTGATTGTATCACA 57.185 25.926 0.00 0.00 39.39 3.58
4383 7153 8.854979 TTTGAGTTTGTTTGATTGTATCACAG 57.145 30.769 0.00 0.00 39.39 3.66
4384 7154 7.800155 TGAGTTTGTTTGATTGTATCACAGA 57.200 32.000 0.00 0.00 39.39 3.41
4385 7155 8.219546 TGAGTTTGTTTGATTGTATCACAGAA 57.780 30.769 0.00 0.00 39.39 3.02
4386 7156 8.681806 TGAGTTTGTTTGATTGTATCACAGAAA 58.318 29.630 0.00 0.00 39.39 2.52
4387 7157 9.515020 GAGTTTGTTTGATTGTATCACAGAAAA 57.485 29.630 0.00 0.00 39.39 2.29
4388 7158 9.868277 AGTTTGTTTGATTGTATCACAGAAAAA 57.132 25.926 0.00 0.00 39.39 1.94
4414 7184 3.850122 GGATTTCTTCCAAAAGGTCCG 57.150 47.619 0.00 0.00 44.74 4.79
4415 7185 3.418047 GGATTTCTTCCAAAAGGTCCGA 58.582 45.455 0.00 0.00 44.74 4.55
4416 7186 3.440522 GGATTTCTTCCAAAAGGTCCGAG 59.559 47.826 0.00 0.00 44.74 4.63
4417 7187 1.892209 TTCTTCCAAAAGGTCCGAGC 58.108 50.000 0.00 0.00 33.03 5.03
4418 7188 0.036306 TCTTCCAAAAGGTCCGAGCC 59.964 55.000 0.00 0.00 33.03 4.70
4419 7189 0.960861 CTTCCAAAAGGTCCGAGCCC 60.961 60.000 0.00 0.00 0.00 5.19
4420 7190 1.710996 TTCCAAAAGGTCCGAGCCCA 61.711 55.000 0.00 0.00 0.00 5.36
4421 7191 1.000896 CCAAAAGGTCCGAGCCCAT 60.001 57.895 0.00 0.00 0.00 4.00
4422 7192 1.032114 CCAAAAGGTCCGAGCCCATC 61.032 60.000 0.00 0.00 0.00 3.51
4423 7193 1.032114 CAAAAGGTCCGAGCCCATCC 61.032 60.000 0.00 0.00 0.00 3.51
4424 7194 1.497309 AAAAGGTCCGAGCCCATCCA 61.497 55.000 0.00 0.00 0.00 3.41
4425 7195 2.198304 AAAGGTCCGAGCCCATCCAC 62.198 60.000 0.00 0.00 0.00 4.02
4426 7196 4.176752 GGTCCGAGCCCATCCACC 62.177 72.222 0.00 0.00 0.00 4.61
4427 7197 3.083997 GTCCGAGCCCATCCACCT 61.084 66.667 0.00 0.00 0.00 4.00
4428 7198 2.764128 TCCGAGCCCATCCACCTC 60.764 66.667 0.00 0.00 0.00 3.85
4429 7199 3.866582 CCGAGCCCATCCACCTCC 61.867 72.222 0.00 0.00 0.00 4.30
4430 7200 2.765807 CGAGCCCATCCACCTCCT 60.766 66.667 0.00 0.00 0.00 3.69
4431 7201 2.801631 CGAGCCCATCCACCTCCTC 61.802 68.421 0.00 0.00 0.00 3.71
4432 7202 2.367512 AGCCCATCCACCTCCTCC 60.368 66.667 0.00 0.00 0.00 4.30
4433 7203 3.493303 GCCCATCCACCTCCTCCC 61.493 72.222 0.00 0.00 0.00 4.30
4434 7204 2.374342 CCCATCCACCTCCTCCCT 59.626 66.667 0.00 0.00 0.00 4.20
4435 7205 1.768077 CCCATCCACCTCCTCCCTC 60.768 68.421 0.00 0.00 0.00 4.30
4436 7206 1.316266 CCATCCACCTCCTCCCTCT 59.684 63.158 0.00 0.00 0.00 3.69
4437 7207 0.762461 CCATCCACCTCCTCCCTCTC 60.762 65.000 0.00 0.00 0.00 3.20
4438 7208 0.762461 CATCCACCTCCTCCCTCTCC 60.762 65.000 0.00 0.00 0.00 3.71
4439 7209 1.231751 ATCCACCTCCTCCCTCTCCA 61.232 60.000 0.00 0.00 0.00 3.86
4440 7210 1.382420 CCACCTCCTCCCTCTCCAG 60.382 68.421 0.00 0.00 0.00 3.86
4441 7211 2.063378 CACCTCCTCCCTCTCCAGC 61.063 68.421 0.00 0.00 0.00 4.85
4442 7212 2.252898 ACCTCCTCCCTCTCCAGCT 61.253 63.158 0.00 0.00 0.00 4.24
4443 7213 1.457455 CCTCCTCCCTCTCCAGCTC 60.457 68.421 0.00 0.00 0.00 4.09
4444 7214 1.457455 CTCCTCCCTCTCCAGCTCC 60.457 68.421 0.00 0.00 0.00 4.70
4445 7215 2.837291 CCTCCCTCTCCAGCTCCG 60.837 72.222 0.00 0.00 0.00 4.63
4446 7216 2.837291 CTCCCTCTCCAGCTCCGG 60.837 72.222 0.00 0.00 0.00 5.14
4465 7235 3.695606 GCTCTGCCCACAGTCGGA 61.696 66.667 0.00 0.00 44.77 4.55
4466 7236 2.262915 CTCTGCCCACAGTCGGAC 59.737 66.667 0.00 0.00 44.77 4.79
4467 7237 3.633094 CTCTGCCCACAGTCGGACG 62.633 68.421 1.89 0.65 44.77 4.79
4471 7241 4.436998 CCCACAGTCGGACGCTCC 62.437 72.222 1.89 0.00 0.00 4.70
4495 7265 4.479993 GCTCCAGCACTCCGCCAT 62.480 66.667 0.00 0.00 44.04 4.40
4496 7266 2.513204 CTCCAGCACTCCGCCATG 60.513 66.667 0.00 0.00 44.04 3.66
4497 7267 4.100084 TCCAGCACTCCGCCATGG 62.100 66.667 7.63 7.63 44.04 3.66
4498 7268 4.415150 CCAGCACTCCGCCATGGT 62.415 66.667 14.67 0.00 44.04 3.55
4499 7269 2.821366 CAGCACTCCGCCATGGTC 60.821 66.667 14.67 4.79 44.04 4.02
4500 7270 4.101448 AGCACTCCGCCATGGTCC 62.101 66.667 14.67 0.00 44.04 4.46
4502 7272 3.770040 CACTCCGCCATGGTCCGA 61.770 66.667 14.67 5.52 39.52 4.55
4503 7273 3.771160 ACTCCGCCATGGTCCGAC 61.771 66.667 14.67 0.00 39.52 4.79
4504 7274 4.873129 CTCCGCCATGGTCCGACG 62.873 72.222 14.67 7.70 39.52 5.12
4506 7276 4.873129 CCGCCATGGTCCGACGAG 62.873 72.222 14.67 0.00 0.00 4.18
4507 7277 3.822192 CGCCATGGTCCGACGAGA 61.822 66.667 14.67 0.00 0.00 4.04
4508 7278 2.815308 GCCATGGTCCGACGAGAT 59.185 61.111 14.67 0.00 0.00 2.75
4509 7279 1.592669 GCCATGGTCCGACGAGATG 60.593 63.158 14.67 0.00 0.00 2.90
4510 7280 1.068083 CCATGGTCCGACGAGATGG 59.932 63.158 2.57 7.92 0.00 3.51
4511 7281 1.592669 CATGGTCCGACGAGATGGC 60.593 63.158 0.00 0.00 0.00 4.40
4512 7282 2.797278 ATGGTCCGACGAGATGGCC 61.797 63.158 0.00 0.00 0.00 5.36
4513 7283 4.570663 GGTCCGACGAGATGGCCG 62.571 72.222 0.00 0.00 0.00 6.13
4514 7284 3.515286 GTCCGACGAGATGGCCGA 61.515 66.667 0.00 0.00 0.00 5.54
4515 7285 3.209812 TCCGACGAGATGGCCGAG 61.210 66.667 0.00 0.00 0.00 4.63
4516 7286 4.933064 CCGACGAGATGGCCGAGC 62.933 72.222 0.00 0.00 0.00 5.03
4517 7287 4.193334 CGACGAGATGGCCGAGCA 62.193 66.667 0.00 0.00 0.00 4.26
4518 7288 2.184322 GACGAGATGGCCGAGCAA 59.816 61.111 0.00 0.00 0.00 3.91
4519 7289 2.125512 ACGAGATGGCCGAGCAAC 60.126 61.111 0.00 0.00 0.00 4.17
4520 7290 2.125552 CGAGATGGCCGAGCAACA 60.126 61.111 0.00 0.00 0.00 3.33
4521 7291 2.169789 CGAGATGGCCGAGCAACAG 61.170 63.158 0.00 0.00 0.00 3.16
4522 7292 1.817099 GAGATGGCCGAGCAACAGG 60.817 63.158 0.00 0.00 0.00 4.00
4523 7293 2.825836 GATGGCCGAGCAACAGGG 60.826 66.667 0.00 0.00 0.00 4.45
4527 7297 3.512516 GCCGAGCAACAGGGCATC 61.513 66.667 0.00 0.00 46.13 3.91
4528 7298 2.825836 CCGAGCAACAGGGCATCC 60.826 66.667 0.00 0.00 35.83 3.51
4529 7299 2.270205 CGAGCAACAGGGCATCCT 59.730 61.111 0.00 0.00 46.26 3.24
4537 7307 2.456364 AGGGCATCCTGGAGTCCA 59.544 61.111 12.40 12.40 42.98 4.02
4538 7308 1.005289 AGGGCATCCTGGAGTCCAT 59.995 57.895 13.56 8.48 42.98 3.41
4539 7309 1.059006 AGGGCATCCTGGAGTCCATC 61.059 60.000 13.56 0.00 42.98 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.627577 GTGTGTGTCTGTCTTGTCCATTT 59.372 43.478 0.00 0.00 0.00 2.32
2 3 2.170397 TGTGTGTGTCTGTCTTGTCCAT 59.830 45.455 0.00 0.00 0.00 3.41
3 4 1.552792 TGTGTGTGTCTGTCTTGTCCA 59.447 47.619 0.00 0.00 0.00 4.02
5 6 2.604914 CTGTGTGTGTGTCTGTCTTGTC 59.395 50.000 0.00 0.00 0.00 3.18
7 8 1.935873 CCTGTGTGTGTGTCTGTCTTG 59.064 52.381 0.00 0.00 0.00 3.02
8 9 1.743772 GCCTGTGTGTGTGTCTGTCTT 60.744 52.381 0.00 0.00 0.00 3.01
9 10 0.179073 GCCTGTGTGTGTGTCTGTCT 60.179 55.000 0.00 0.00 0.00 3.41
11 12 0.462581 CTGCCTGTGTGTGTGTCTGT 60.463 55.000 0.00 0.00 0.00 3.41
12 13 1.162181 CCTGCCTGTGTGTGTGTCTG 61.162 60.000 0.00 0.00 0.00 3.51
13 14 1.146930 CCTGCCTGTGTGTGTGTCT 59.853 57.895 0.00 0.00 0.00 3.41
14 15 2.546494 GCCTGCCTGTGTGTGTGTC 61.546 63.158 0.00 0.00 0.00 3.67
15 16 2.516930 GCCTGCCTGTGTGTGTGT 60.517 61.111 0.00 0.00 0.00 3.72
16 17 2.516695 TGCCTGCCTGTGTGTGTG 60.517 61.111 0.00 0.00 0.00 3.82
17 18 2.203252 CTGCCTGCCTGTGTGTGT 60.203 61.111 0.00 0.00 0.00 3.72
18 19 3.667282 GCTGCCTGCCTGTGTGTG 61.667 66.667 0.00 0.00 35.15 3.82
19 20 4.193893 TGCTGCCTGCCTGTGTGT 62.194 61.111 0.00 0.00 42.00 3.72
20 21 3.362797 CTGCTGCCTGCCTGTGTG 61.363 66.667 0.00 0.00 42.00 3.82
42 43 1.012841 GAAAGGATGGCTTCTCTGCG 58.987 55.000 0.07 0.00 0.00 5.18
77 78 2.045438 CCCGGCTGTGGCAATACA 60.045 61.111 0.00 0.00 40.87 2.29
92 93 3.669939 TCCTTTCATTTCATCTCCCCC 57.330 47.619 0.00 0.00 0.00 5.40
182 187 1.001924 GAGATGCGCATTCTCGAGAGA 60.002 52.381 26.12 7.46 39.12 3.10
198 203 2.425312 CACTAGACGCTTGGACAGAGAT 59.575 50.000 0.00 0.00 0.00 2.75
223 228 6.948309 ACTATGTTTAGCTTTGAAAGGGTGAT 59.052 34.615 7.09 0.00 0.00 3.06
225 230 6.575162 ACTATGTTTAGCTTTGAAAGGGTG 57.425 37.500 7.09 0.00 0.00 4.61
227 232 8.336801 ACTAACTATGTTTAGCTTTGAAAGGG 57.663 34.615 7.09 0.00 33.02 3.95
243 248 7.171678 GCAAGGGATTAGCACTAACTAACTATG 59.828 40.741 0.00 0.00 35.05 2.23
244 249 7.147549 TGCAAGGGATTAGCACTAACTAACTAT 60.148 37.037 0.00 0.00 35.05 2.12
250 255 4.510167 ATGCAAGGGATTAGCACTAACT 57.490 40.909 0.00 0.00 41.60 2.24
264 2849 2.541346 CGCACTGTATCTGTATGCAAGG 59.459 50.000 0.00 0.00 36.02 3.61
346 2931 1.856265 GACAGGCGCAGAAAACCCAG 61.856 60.000 10.83 0.00 0.00 4.45
407 2992 4.508861 GGTGTAGAGGCGCGATTATTTTAA 59.491 41.667 12.10 0.00 0.00 1.52
412 2997 1.000163 CTGGTGTAGAGGCGCGATTAT 60.000 52.381 12.10 0.00 0.00 1.28
418 3003 4.840005 GGGCTGGTGTAGAGGCGC 62.840 72.222 0.00 0.00 36.87 6.53
422 3007 2.670148 GGGTGGGGCTGGTGTAGAG 61.670 68.421 0.00 0.00 0.00 2.43
480 3065 2.074948 CATGACAGGGAGGGAGGGG 61.075 68.421 0.00 0.00 0.00 4.79
566 3159 2.993853 GGACAAGCAGGAGAGGGG 59.006 66.667 0.00 0.00 0.00 4.79
600 3193 2.308722 GGAATGGGGCAGGACTGGA 61.309 63.158 1.01 0.00 0.00 3.86
601 3194 2.276740 GGAATGGGGCAGGACTGG 59.723 66.667 1.01 0.00 0.00 4.00
602 3195 1.077212 CTGGAATGGGGCAGGACTG 60.077 63.158 0.00 0.00 0.00 3.51
603 3196 2.988839 GCTGGAATGGGGCAGGACT 61.989 63.158 0.00 0.00 0.00 3.85
604 3197 2.440980 GCTGGAATGGGGCAGGAC 60.441 66.667 0.00 0.00 0.00 3.85
629 3222 1.432270 GCTATGCGTGTCCAGCTTCC 61.432 60.000 0.00 0.00 35.28 3.46
677 3306 1.284785 GGTGGATTTGTGAGGGGATCA 59.715 52.381 0.00 0.00 34.79 2.92
714 3343 1.744741 GCAGCAAGAGGGACAGCTC 60.745 63.158 0.00 0.00 34.61 4.09
791 3423 1.028905 TTTCTTGGTTCTTGGTGCGG 58.971 50.000 0.00 0.00 0.00 5.69
793 3425 2.627699 TGGATTTCTTGGTTCTTGGTGC 59.372 45.455 0.00 0.00 0.00 5.01
796 3428 2.892852 TGCTGGATTTCTTGGTTCTTGG 59.107 45.455 0.00 0.00 0.00 3.61
849 3481 0.742281 CGTGGCAGATTGGGACAGAG 60.742 60.000 0.00 0.00 42.39 3.35
853 3485 2.359850 TGCGTGGCAGATTGGGAC 60.360 61.111 0.00 0.00 33.32 4.46
909 3541 2.954318 CCAAATTGCTGGAGGAGTATGG 59.046 50.000 0.00 0.00 38.96 2.74
910 3542 2.360165 GCCAAATTGCTGGAGGAGTATG 59.640 50.000 0.04 0.00 38.96 2.39
911 3543 2.659428 GCCAAATTGCTGGAGGAGTAT 58.341 47.619 0.04 0.00 38.96 2.12
1224 3856 3.353836 CCGCCGTTGTCCAGGTTG 61.354 66.667 0.00 0.00 0.00 3.77
1414 4046 1.865865 TCGTCTGTTCCAGAACTTGC 58.134 50.000 11.56 1.60 42.46 4.01
1424 4058 1.713932 GCGGCAAAATTTCGTCTGTTC 59.286 47.619 0.00 0.00 0.00 3.18
1430 4064 2.430075 GCCGCGGCAAAATTTCGT 60.430 55.556 43.55 0.00 41.49 3.85
1446 4080 1.356624 GTATGTGGCCGCTTGATGC 59.643 57.895 18.96 2.46 38.57 3.91
1447 4081 0.747644 TGGTATGTGGCCGCTTGATG 60.748 55.000 18.96 0.00 0.00 3.07
1448 4082 0.748005 GTGGTATGTGGCCGCTTGAT 60.748 55.000 18.96 5.28 33.96 2.57
1495 4169 9.760077 CCAGATAAAAGGTCGTAAATACTGTAT 57.240 33.333 0.00 0.00 0.00 2.29
1596 4276 2.552315 TGCAAAACCGAGATTTCTGACC 59.448 45.455 0.00 0.00 0.00 4.02
1625 4305 2.885135 TCATGTCAAATCCTGCCTGT 57.115 45.000 0.00 0.00 0.00 4.00
1775 4455 4.362476 GGGGCGTTGCAGGCAAAG 62.362 66.667 14.27 14.27 37.70 2.77
1889 4569 3.303329 CGGATTGCACAATTATCAGGACG 60.303 47.826 0.00 0.00 0.00 4.79
1937 4617 4.807039 TTTAGCGCGGCCTCGACC 62.807 66.667 21.43 1.26 39.00 4.79
1994 4674 4.988598 AGCTTCACACCGCCACCG 62.989 66.667 0.00 0.00 0.00 4.94
1997 4677 4.329545 GGGAGCTTCACACCGCCA 62.330 66.667 0.00 0.00 0.00 5.69
2048 4728 2.430244 TCCTCGTCGAAGTTGCGC 60.430 61.111 0.00 0.00 0.00 6.09
2087 4767 1.918262 TCATTGTCAAGATCCTGGCCT 59.082 47.619 3.32 0.00 0.00 5.19
2090 4770 2.092538 AGGCTCATTGTCAAGATCCTGG 60.093 50.000 6.62 0.00 29.73 4.45
2095 4775 2.641305 GAGCAGGCTCATTGTCAAGAT 58.359 47.619 16.03 0.00 42.31 2.40
2120 4800 1.532238 GGGAGTGGGAAGGTATGGC 59.468 63.158 0.00 0.00 0.00 4.40
2207 4887 3.197790 CTCACAATCCAGCGGCCG 61.198 66.667 24.05 24.05 0.00 6.13
2282 4962 1.425448 ACCCAAACCTTCCTTCCTCTG 59.575 52.381 0.00 0.00 0.00 3.35
2321 5001 0.168788 CGTAAGCACTGCCCATGTTG 59.831 55.000 0.00 0.00 0.00 3.33
2384 5064 3.261897 GGAACTGGAGGATGTTCTTCTGA 59.738 47.826 0.00 0.00 41.42 3.27
2471 5151 5.761726 TCTCTGCATAATGATGTCATGAACC 59.238 40.000 0.00 0.00 36.56 3.62
2505 5185 4.778415 CGTGTCCCGGAGCGACAG 62.778 72.222 11.73 4.04 40.79 3.51
2546 5226 0.322366 TCATGAACGCCAAGCCATCA 60.322 50.000 0.00 0.00 0.00 3.07
2549 5229 1.956043 GTTCATGAACGCCAAGCCA 59.044 52.632 22.09 0.00 0.00 4.75
2582 5262 1.580704 CGTGCGTTAAGATCACGGTAC 59.419 52.381 13.24 0.00 46.68 3.34
2612 5292 2.284190 GCATTTCCCTGTCTGTCTAGC 58.716 52.381 0.00 0.00 0.00 3.42
2699 5379 0.315568 CTAGCCAGCGATACCCAGAC 59.684 60.000 0.00 0.00 0.00 3.51
2723 5403 8.753497 AAATCAAGTCAAGAAAACTAACCTCT 57.247 30.769 0.00 0.00 0.00 3.69
2757 5437 9.429359 CAGAAAGAGCATTTCTAGAAGAGTTTA 57.571 33.333 14.42 0.00 36.69 2.01
2758 5438 8.153550 TCAGAAAGAGCATTTCTAGAAGAGTTT 58.846 33.333 14.42 1.94 36.69 2.66
2760 5440 7.238486 TCAGAAAGAGCATTTCTAGAAGAGT 57.762 36.000 14.42 0.00 36.69 3.24
2761 5441 8.545229 TTTCAGAAAGAGCATTTCTAGAAGAG 57.455 34.615 14.42 3.76 36.69 2.85
2762 5442 7.118971 GCTTTCAGAAAGAGCATTTCTAGAAGA 59.881 37.037 24.70 14.58 41.02 2.87
2763 5443 7.242783 GCTTTCAGAAAGAGCATTTCTAGAAG 58.757 38.462 24.70 20.44 41.02 2.85
2764 5444 6.128445 CGCTTTCAGAAAGAGCATTTCTAGAA 60.128 38.462 24.70 15.53 41.02 2.10
2765 5445 5.349817 CGCTTTCAGAAAGAGCATTTCTAGA 59.650 40.000 24.70 11.87 41.02 2.43
2766 5446 5.349817 TCGCTTTCAGAAAGAGCATTTCTAG 59.650 40.000 24.70 10.73 41.02 2.43
2767 5447 5.237815 TCGCTTTCAGAAAGAGCATTTCTA 58.762 37.500 24.70 2.89 41.02 2.10
2768 5448 4.067896 TCGCTTTCAGAAAGAGCATTTCT 58.932 39.130 24.70 10.27 41.02 2.52
2769 5449 4.083590 ACTCGCTTTCAGAAAGAGCATTTC 60.084 41.667 24.70 5.85 41.02 2.17
2770 5450 3.817647 ACTCGCTTTCAGAAAGAGCATTT 59.182 39.130 24.70 5.45 41.02 2.32
2771 5451 3.406764 ACTCGCTTTCAGAAAGAGCATT 58.593 40.909 24.70 7.65 41.02 3.56
2772 5452 3.051081 ACTCGCTTTCAGAAAGAGCAT 57.949 42.857 24.70 10.94 41.02 3.79
2773 5453 2.533266 ACTCGCTTTCAGAAAGAGCA 57.467 45.000 24.70 11.42 41.02 4.26
2774 5454 3.887339 AAACTCGCTTTCAGAAAGAGC 57.113 42.857 24.70 11.44 41.02 4.09
2777 5457 4.152580 GGGACTAAACTCGCTTTCAGAAAG 59.847 45.833 17.46 17.46 41.46 2.62
2788 5468 1.009829 GCATGCTGGGACTAAACTCG 58.990 55.000 11.37 0.00 0.00 4.18
2789 5469 2.409948 AGCATGCTGGGACTAAACTC 57.590 50.000 21.98 0.00 0.00 3.01
2798 5478 2.706339 AGAACTTCTAGCATGCTGGG 57.294 50.000 30.42 21.11 0.00 4.45
2830 5510 8.525290 AATGGCTACAGTTAAAATAGAGCAAT 57.475 30.769 0.00 0.00 0.00 3.56
2889 5569 9.474920 AAAAATACATGTTTCATCGTCAATGTT 57.525 25.926 2.30 0.00 36.68 2.71
2895 5575 9.607285 ACAAGTAAAAATACATGTTTCATCGTC 57.393 29.630 2.30 0.00 28.84 4.20
2920 5604 6.773685 AGTTCTATGTACTCCTACAGGATGAC 59.226 42.308 0.00 1.05 44.46 3.06
2929 5613 7.687383 TGTCCTAGAGTTCTATGTACTCCTA 57.313 40.000 0.00 0.00 42.35 2.94
2935 5619 5.948162 ACGGTTTGTCCTAGAGTTCTATGTA 59.052 40.000 0.00 0.00 0.00 2.29
3037 5722 7.907389 TCAAGTTGGTCAGATCAAAGTAGTAT 58.093 34.615 0.00 0.00 0.00 2.12
3042 5727 4.217118 GCATCAAGTTGGTCAGATCAAAGT 59.783 41.667 0.00 0.00 0.00 2.66
3067 5752 3.065655 GCAGGCTGATCTAGTGCATAAG 58.934 50.000 20.86 0.00 34.18 1.73
3078 5763 1.755395 TGGCATTGGCAGGCTGATC 60.755 57.895 20.86 10.03 43.71 2.92
3101 5786 4.708421 TGGGTGGACACAAGATAGTACTAC 59.292 45.833 4.31 0.00 0.00 2.73
3102 5787 4.938028 TGGGTGGACACAAGATAGTACTA 58.062 43.478 4.77 4.77 0.00 1.82
3103 5788 3.786553 TGGGTGGACACAAGATAGTACT 58.213 45.455 0.00 0.00 0.00 2.73
3104 5789 4.546829 TTGGGTGGACACAAGATAGTAC 57.453 45.455 4.69 0.00 33.72 2.73
3105 5790 5.097742 CATTGGGTGGACACAAGATAGTA 57.902 43.478 4.69 0.00 43.25 1.82
3122 5807 2.590821 GATGGATTCCCTGACCATTGG 58.409 52.381 0.00 0.00 43.30 3.16
3125 5810 2.219216 AGGATGGATTCCCTGACCAT 57.781 50.000 0.00 0.00 46.81 3.55
3127 5812 3.388552 AAAAGGATGGATTCCCTGACC 57.611 47.619 0.00 0.00 46.81 4.02
3133 5818 4.867086 TCAGGGTTAAAAGGATGGATTCC 58.133 43.478 0.00 0.00 45.85 3.01
3146 5831 6.094186 GCACAAAATTGGTTTTTCAGGGTTAA 59.906 34.615 0.00 0.00 35.31 2.01
3156 5841 6.591001 ACAATAGGAGCACAAAATTGGTTTT 58.409 32.000 0.00 0.00 38.03 2.43
3197 5882 9.998106 GGATAGGTTCAGATAACATAAGCTTAA 57.002 33.333 10.85 0.00 32.41 1.85
3198 5883 9.381038 AGGATAGGTTCAGATAACATAAGCTTA 57.619 33.333 8.99 8.99 32.41 3.09
3218 5921 6.130569 AGTAACCACCTCTCAGTAAGGATAG 58.869 44.000 0.00 0.00 37.35 2.08
3220 5923 4.949121 AGTAACCACCTCTCAGTAAGGAT 58.051 43.478 0.00 0.00 37.35 3.24
3233 5936 7.921745 TGTAAACAAAGCATTTAAGTAACCACC 59.078 33.333 0.00 0.00 35.03 4.61
3234 5937 8.859517 TGTAAACAAAGCATTTAAGTAACCAC 57.140 30.769 0.00 0.00 35.03 4.16
3236 5939 9.908152 ATCTGTAAACAAAGCATTTAAGTAACC 57.092 29.630 0.00 0.00 35.03 2.85
3242 5945 8.924691 GCAATGATCTGTAAACAAAGCATTTAA 58.075 29.630 0.00 0.00 35.03 1.52
3243 5946 8.306038 AGCAATGATCTGTAAACAAAGCATTTA 58.694 29.630 0.00 0.00 35.03 1.40
3244 5947 7.117236 CAGCAATGATCTGTAAACAAAGCATTT 59.883 33.333 0.00 0.00 40.26 2.32
3245 5948 6.588756 CAGCAATGATCTGTAAACAAAGCATT 59.411 34.615 0.00 0.00 0.00 3.56
3323 6026 1.283029 ACCATCTCCCACAGAACCATG 59.717 52.381 0.00 0.00 33.62 3.66
3332 6035 2.584608 CCGGTCACCATCTCCCAC 59.415 66.667 0.00 0.00 0.00 4.61
3443 6146 0.532573 TCATCAGCGACCTCAGGAAC 59.467 55.000 0.00 0.00 0.00 3.62
3488 6191 1.291877 CCGAGAACTGAGGGCGTTTG 61.292 60.000 0.00 0.00 0.00 2.93
3491 6194 2.282958 TCCGAGAACTGAGGGCGT 60.283 61.111 0.00 0.00 0.00 5.68
3714 6428 0.388907 CATTGGGCAAGAAACGGCAG 60.389 55.000 0.00 0.00 0.00 4.85
3773 6487 4.400567 TCATCTCACTCACTCTACATGTGG 59.599 45.833 9.11 5.55 36.21 4.17
3774 6488 5.573337 TCATCTCACTCACTCTACATGTG 57.427 43.478 9.11 0.00 36.82 3.21
3775 6489 6.596309 TTTCATCTCACTCACTCTACATGT 57.404 37.500 2.69 2.69 0.00 3.21
3776 6490 7.895975 TTTTTCATCTCACTCACTCTACATG 57.104 36.000 0.00 0.00 0.00 3.21
3777 6491 8.316946 TGATTTTTCATCTCACTCACTCTACAT 58.683 33.333 0.00 0.00 0.00 2.29
3778 6492 7.670364 TGATTTTTCATCTCACTCACTCTACA 58.330 34.615 0.00 0.00 0.00 2.74
3779 6493 8.439286 GTTGATTTTTCATCTCACTCACTCTAC 58.561 37.037 0.00 0.00 0.00 2.59
3780 6494 8.150296 TGTTGATTTTTCATCTCACTCACTCTA 58.850 33.333 0.00 0.00 0.00 2.43
3781 6495 6.994496 TGTTGATTTTTCATCTCACTCACTCT 59.006 34.615 0.00 0.00 0.00 3.24
3805 6519 8.121708 GCTAAACTAAATCTTTGATGCTCTCTG 58.878 37.037 0.00 0.00 0.00 3.35
3822 6536 5.413833 CCTATAGATCCGTCCGCTAAACTAA 59.586 44.000 0.00 0.00 0.00 2.24
3823 6537 4.940046 CCTATAGATCCGTCCGCTAAACTA 59.060 45.833 0.00 0.00 0.00 2.24
3824 6538 3.757493 CCTATAGATCCGTCCGCTAAACT 59.243 47.826 0.00 0.00 0.00 2.66
3825 6539 3.755378 TCCTATAGATCCGTCCGCTAAAC 59.245 47.826 0.00 0.00 0.00 2.01
3826 6540 3.755378 GTCCTATAGATCCGTCCGCTAAA 59.245 47.826 0.00 0.00 0.00 1.85
3832 6546 2.826725 CCCTTGTCCTATAGATCCGTCC 59.173 54.545 0.00 0.00 0.00 4.79
3875 6589 5.211973 GTGGATGATAGCATAGGATAGGGA 58.788 45.833 0.00 0.00 34.11 4.20
3876 6590 4.964897 TGTGGATGATAGCATAGGATAGGG 59.035 45.833 0.00 0.00 34.11 3.53
3878 6592 6.038985 CGTTGTGGATGATAGCATAGGATAG 58.961 44.000 0.00 0.00 34.11 2.08
3879 6593 5.714806 TCGTTGTGGATGATAGCATAGGATA 59.285 40.000 0.00 0.00 34.11 2.59
3880 6594 4.528206 TCGTTGTGGATGATAGCATAGGAT 59.472 41.667 0.00 0.00 34.11 3.24
3881 6595 3.895041 TCGTTGTGGATGATAGCATAGGA 59.105 43.478 0.00 0.00 34.11 2.94
3887 6601 5.005779 CAGTTAGTTCGTTGTGGATGATAGC 59.994 44.000 0.00 0.00 0.00 2.97
3915 6629 1.281287 AGAGCATTGCATGGACTCACT 59.719 47.619 11.91 0.00 0.00 3.41
3916 6630 1.747709 AGAGCATTGCATGGACTCAC 58.252 50.000 11.91 0.00 0.00 3.51
3917 6631 2.089201 CAAGAGCATTGCATGGACTCA 58.911 47.619 11.91 0.00 0.00 3.41
3918 6632 1.404391 CCAAGAGCATTGCATGGACTC 59.596 52.381 18.11 4.20 33.15 3.36
3962 6676 5.761726 CCATTGTTTATAGCAGCAGATGAGA 59.238 40.000 0.00 0.00 0.00 3.27
3963 6677 5.530171 ACCATTGTTTATAGCAGCAGATGAG 59.470 40.000 0.00 0.00 0.00 2.90
3964 6678 5.297527 CACCATTGTTTATAGCAGCAGATGA 59.702 40.000 0.00 0.00 0.00 2.92
3965 6679 5.506815 CCACCATTGTTTATAGCAGCAGATG 60.507 44.000 0.00 0.00 0.00 2.90
3966 6680 4.581824 CCACCATTGTTTATAGCAGCAGAT 59.418 41.667 0.00 0.00 0.00 2.90
4136 6902 1.226491 GAACAGCCGCACATGCATC 60.226 57.895 0.00 0.00 42.21 3.91
4149 6915 2.229784 GCCATGAACTTTGGAGGAACAG 59.770 50.000 0.00 0.00 36.26 3.16
4150 6916 2.238521 GCCATGAACTTTGGAGGAACA 58.761 47.619 0.00 0.00 36.26 3.18
4209 6977 7.347508 ACAAGAATGACAAAGTCGTACATAC 57.652 36.000 0.00 0.00 34.95 2.39
4210 6978 9.083080 CATACAAGAATGACAAAGTCGTACATA 57.917 33.333 0.00 0.00 34.95 2.29
4211 6979 7.413000 GCATACAAGAATGACAAAGTCGTACAT 60.413 37.037 0.00 0.00 34.95 2.29
4250 7020 4.785055 CACGAAAAAGAGAAAGCATCATCG 59.215 41.667 0.00 0.00 0.00 3.84
4271 7041 1.425428 CCGCGAATCAAAGAGGCAC 59.575 57.895 8.23 0.00 0.00 5.01
4272 7042 1.745115 CCCGCGAATCAAAGAGGCA 60.745 57.895 8.23 0.00 0.00 4.75
4273 7043 0.815615 ATCCCGCGAATCAAAGAGGC 60.816 55.000 8.23 0.00 0.00 4.70
4274 7044 1.331756 CAATCCCGCGAATCAAAGAGG 59.668 52.381 8.23 0.00 0.00 3.69
4275 7045 2.279741 TCAATCCCGCGAATCAAAGAG 58.720 47.619 8.23 0.00 0.00 2.85
4276 7046 2.394930 TCAATCCCGCGAATCAAAGA 57.605 45.000 8.23 0.00 0.00 2.52
4277 7047 3.485947 TTTCAATCCCGCGAATCAAAG 57.514 42.857 8.23 0.00 0.00 2.77
4278 7048 3.924918 TTTTCAATCCCGCGAATCAAA 57.075 38.095 8.23 1.41 0.00 2.69
4279 7049 3.924918 TTTTTCAATCCCGCGAATCAA 57.075 38.095 8.23 0.00 0.00 2.57
4296 7066 9.981114 CTACATTTTTCCTATTCCTGTGTTTTT 57.019 29.630 0.00 0.00 0.00 1.94
4297 7067 8.585018 CCTACATTTTTCCTATTCCTGTGTTTT 58.415 33.333 0.00 0.00 0.00 2.43
4298 7068 7.947890 TCCTACATTTTTCCTATTCCTGTGTTT 59.052 33.333 0.00 0.00 0.00 2.83
4299 7069 7.466804 TCCTACATTTTTCCTATTCCTGTGTT 58.533 34.615 0.00 0.00 0.00 3.32
4300 7070 7.027874 TCCTACATTTTTCCTATTCCTGTGT 57.972 36.000 0.00 0.00 0.00 3.72
4301 7071 8.408601 CAATCCTACATTTTTCCTATTCCTGTG 58.591 37.037 0.00 0.00 0.00 3.66
4302 7072 8.336235 TCAATCCTACATTTTTCCTATTCCTGT 58.664 33.333 0.00 0.00 0.00 4.00
4303 7073 8.752005 TCAATCCTACATTTTTCCTATTCCTG 57.248 34.615 0.00 0.00 0.00 3.86
4304 7074 9.768215 TTTCAATCCTACATTTTTCCTATTCCT 57.232 29.630 0.00 0.00 0.00 3.36
4309 7079 9.527157 TGTCATTTCAATCCTACATTTTTCCTA 57.473 29.630 0.00 0.00 0.00 2.94
4310 7080 8.421249 TGTCATTTCAATCCTACATTTTTCCT 57.579 30.769 0.00 0.00 0.00 3.36
4311 7081 9.090692 CATGTCATTTCAATCCTACATTTTTCC 57.909 33.333 0.00 0.00 0.00 3.13
4312 7082 8.598075 GCATGTCATTTCAATCCTACATTTTTC 58.402 33.333 0.00 0.00 0.00 2.29
4313 7083 7.550196 GGCATGTCATTTCAATCCTACATTTTT 59.450 33.333 0.00 0.00 0.00 1.94
4314 7084 7.043565 GGCATGTCATTTCAATCCTACATTTT 58.956 34.615 0.00 0.00 0.00 1.82
4315 7085 6.407299 GGGCATGTCATTTCAATCCTACATTT 60.407 38.462 0.00 0.00 0.00 2.32
4316 7086 5.069516 GGGCATGTCATTTCAATCCTACATT 59.930 40.000 0.00 0.00 0.00 2.71
4317 7087 4.586001 GGGCATGTCATTTCAATCCTACAT 59.414 41.667 0.00 0.00 0.00 2.29
4318 7088 3.953612 GGGCATGTCATTTCAATCCTACA 59.046 43.478 0.00 0.00 0.00 2.74
4319 7089 3.953612 TGGGCATGTCATTTCAATCCTAC 59.046 43.478 0.00 0.00 0.00 3.18
4320 7090 4.248174 TGGGCATGTCATTTCAATCCTA 57.752 40.909 0.00 0.00 0.00 2.94
4321 7091 3.104519 TGGGCATGTCATTTCAATCCT 57.895 42.857 0.00 0.00 0.00 3.24
4322 7092 4.124238 CAATGGGCATGTCATTTCAATCC 58.876 43.478 0.00 0.00 33.08 3.01
4323 7093 4.124238 CCAATGGGCATGTCATTTCAATC 58.876 43.478 0.00 0.00 33.08 2.67
4324 7094 3.775866 TCCAATGGGCATGTCATTTCAAT 59.224 39.130 0.00 0.00 33.08 2.57
4325 7095 3.171528 TCCAATGGGCATGTCATTTCAA 58.828 40.909 0.00 0.00 33.08 2.69
4326 7096 2.817665 TCCAATGGGCATGTCATTTCA 58.182 42.857 0.00 0.00 33.08 2.69
4327 7097 4.374399 GAATCCAATGGGCATGTCATTTC 58.626 43.478 0.00 0.00 33.08 2.17
4328 7098 3.135167 GGAATCCAATGGGCATGTCATTT 59.865 43.478 0.00 0.00 33.08 2.32
4329 7099 2.701951 GGAATCCAATGGGCATGTCATT 59.298 45.455 0.00 5.17 35.45 2.57
4330 7100 2.090943 AGGAATCCAATGGGCATGTCAT 60.091 45.455 0.61 0.00 0.00 3.06
4331 7101 1.288633 AGGAATCCAATGGGCATGTCA 59.711 47.619 0.61 0.00 0.00 3.58
4332 7102 2.077687 AGGAATCCAATGGGCATGTC 57.922 50.000 0.61 0.00 0.00 3.06
4333 7103 3.909427 ATAGGAATCCAATGGGCATGT 57.091 42.857 0.61 0.00 0.00 3.21
4334 7104 5.183530 TCTATAGGAATCCAATGGGCATG 57.816 43.478 0.61 0.00 0.00 4.06
4335 7105 5.865977 TTCTATAGGAATCCAATGGGCAT 57.134 39.130 0.61 0.00 0.00 4.40
4336 7106 5.865977 ATTCTATAGGAATCCAATGGGCA 57.134 39.130 0.61 0.00 40.29 5.36
4337 7107 6.721208 TCAAATTCTATAGGAATCCAATGGGC 59.279 38.462 0.61 0.00 43.17 5.36
4338 7108 7.946776 ACTCAAATTCTATAGGAATCCAATGGG 59.053 37.037 0.61 0.00 43.17 4.00
4339 7109 8.930846 ACTCAAATTCTATAGGAATCCAATGG 57.069 34.615 0.61 0.00 43.17 3.16
4342 7112 9.753674 ACAAACTCAAATTCTATAGGAATCCAA 57.246 29.630 0.61 0.00 43.17 3.53
4343 7113 9.753674 AACAAACTCAAATTCTATAGGAATCCA 57.246 29.630 0.61 0.00 43.17 3.41
4356 7126 9.814899 TGTGATACAATCAAACAAACTCAAATT 57.185 25.926 0.00 0.00 41.69 1.82
4357 7127 9.467258 CTGTGATACAATCAAACAAACTCAAAT 57.533 29.630 0.00 0.00 41.69 2.32
4358 7128 8.681806 TCTGTGATACAATCAAACAAACTCAAA 58.318 29.630 0.00 0.00 41.69 2.69
4359 7129 8.219546 TCTGTGATACAATCAAACAAACTCAA 57.780 30.769 0.00 0.00 41.69 3.02
4360 7130 7.800155 TCTGTGATACAATCAAACAAACTCA 57.200 32.000 0.00 0.00 41.69 3.41
4361 7131 9.515020 TTTTCTGTGATACAATCAAACAAACTC 57.485 29.630 0.00 0.00 41.69 3.01
4362 7132 9.868277 TTTTTCTGTGATACAATCAAACAAACT 57.132 25.926 0.00 0.00 41.69 2.66
4395 7165 3.119814 GCTCGGACCTTTTGGAAGAAATC 60.120 47.826 0.00 0.00 44.07 2.17
4396 7166 2.820197 GCTCGGACCTTTTGGAAGAAAT 59.180 45.455 0.00 0.00 44.07 2.17
4397 7167 2.227194 GCTCGGACCTTTTGGAAGAAA 58.773 47.619 0.00 0.00 44.07 2.52
4398 7168 1.544759 GGCTCGGACCTTTTGGAAGAA 60.545 52.381 0.00 0.00 44.07 2.52
4399 7169 0.036306 GGCTCGGACCTTTTGGAAGA 59.964 55.000 0.00 0.00 44.07 2.87
4400 7170 0.960861 GGGCTCGGACCTTTTGGAAG 60.961 60.000 0.00 0.00 44.07 3.46
4401 7171 1.074248 GGGCTCGGACCTTTTGGAA 59.926 57.895 0.00 0.00 44.07 3.53
4402 7172 1.497309 ATGGGCTCGGACCTTTTGGA 61.497 55.000 0.00 0.00 44.07 3.53
4404 7174 1.032114 GGATGGGCTCGGACCTTTTG 61.032 60.000 0.00 0.00 0.00 2.44
4405 7175 1.303282 GGATGGGCTCGGACCTTTT 59.697 57.895 0.00 0.00 0.00 2.27
4406 7176 1.923395 TGGATGGGCTCGGACCTTT 60.923 57.895 0.00 0.00 0.00 3.11
4407 7177 2.285368 TGGATGGGCTCGGACCTT 60.285 61.111 0.00 0.00 0.00 3.50
4408 7178 3.083997 GTGGATGGGCTCGGACCT 61.084 66.667 0.00 0.00 0.00 3.85
4409 7179 4.176752 GGTGGATGGGCTCGGACC 62.177 72.222 0.00 0.00 0.00 4.46
4410 7180 3.083997 AGGTGGATGGGCTCGGAC 61.084 66.667 0.00 0.00 0.00 4.79
4411 7181 2.764128 GAGGTGGATGGGCTCGGA 60.764 66.667 0.00 0.00 0.00 4.55
4412 7182 3.866582 GGAGGTGGATGGGCTCGG 61.867 72.222 0.00 0.00 0.00 4.63
4413 7183 2.765807 AGGAGGTGGATGGGCTCG 60.766 66.667 0.00 0.00 0.00 5.03
4414 7184 2.447714 GGAGGAGGTGGATGGGCTC 61.448 68.421 0.00 0.00 0.00 4.70
4415 7185 2.367512 GGAGGAGGTGGATGGGCT 60.368 66.667 0.00 0.00 0.00 5.19
4416 7186 3.493303 GGGAGGAGGTGGATGGGC 61.493 72.222 0.00 0.00 0.00 5.36
4417 7187 1.768077 GAGGGAGGAGGTGGATGGG 60.768 68.421 0.00 0.00 0.00 4.00
4418 7188 0.762461 GAGAGGGAGGAGGTGGATGG 60.762 65.000 0.00 0.00 0.00 3.51
4419 7189 0.762461 GGAGAGGGAGGAGGTGGATG 60.762 65.000 0.00 0.00 0.00 3.51
4420 7190 1.231751 TGGAGAGGGAGGAGGTGGAT 61.232 60.000 0.00 0.00 0.00 3.41
4421 7191 1.862138 TGGAGAGGGAGGAGGTGGA 60.862 63.158 0.00 0.00 0.00 4.02
4422 7192 1.382420 CTGGAGAGGGAGGAGGTGG 60.382 68.421 0.00 0.00 0.00 4.61
4423 7193 2.063378 GCTGGAGAGGGAGGAGGTG 61.063 68.421 0.00 0.00 0.00 4.00
4424 7194 2.236959 GAGCTGGAGAGGGAGGAGGT 62.237 65.000 0.00 0.00 0.00 3.85
4425 7195 1.457455 GAGCTGGAGAGGGAGGAGG 60.457 68.421 0.00 0.00 0.00 4.30
4426 7196 1.457455 GGAGCTGGAGAGGGAGGAG 60.457 68.421 0.00 0.00 0.00 3.69
4427 7197 2.693017 GGAGCTGGAGAGGGAGGA 59.307 66.667 0.00 0.00 0.00 3.71
4428 7198 2.837291 CGGAGCTGGAGAGGGAGG 60.837 72.222 0.00 0.00 0.00 4.30
4429 7199 2.837291 CCGGAGCTGGAGAGGGAG 60.837 72.222 0.00 0.00 0.00 4.30
4448 7218 3.695606 TCCGACTGTGGGCAGAGC 61.696 66.667 3.69 0.00 45.28 4.09
4449 7219 2.262915 GTCCGACTGTGGGCAGAG 59.737 66.667 3.69 0.00 45.28 3.35
4450 7220 3.680786 CGTCCGACTGTGGGCAGA 61.681 66.667 3.69 0.00 45.28 4.26
4454 7224 4.436998 GGAGCGTCCGACTGTGGG 62.437 72.222 1.95 1.95 0.00 4.61
4478 7248 4.479993 ATGGCGGAGTGCTGGAGC 62.480 66.667 0.00 0.00 45.43 4.70
4479 7249 2.513204 CATGGCGGAGTGCTGGAG 60.513 66.667 0.00 0.00 45.43 3.86
4480 7250 4.100084 CCATGGCGGAGTGCTGGA 62.100 66.667 0.00 0.00 40.48 3.86
4481 7251 4.415150 ACCATGGCGGAGTGCTGG 62.415 66.667 13.04 0.00 42.97 4.85
4482 7252 2.821366 GACCATGGCGGAGTGCTG 60.821 66.667 13.04 0.00 45.43 4.41
4483 7253 4.101448 GGACCATGGCGGAGTGCT 62.101 66.667 13.04 0.00 45.43 4.40
4485 7255 3.770040 TCGGACCATGGCGGAGTG 61.770 66.667 13.04 0.00 38.63 3.51
4486 7256 3.771160 GTCGGACCATGGCGGAGT 61.771 66.667 13.04 0.00 38.63 3.85
4487 7257 4.873129 CGTCGGACCATGGCGGAG 62.873 72.222 13.04 0.76 38.63 4.63
4489 7259 4.873129 CTCGTCGGACCATGGCGG 62.873 72.222 13.04 9.38 42.50 6.13
4490 7260 3.138930 ATCTCGTCGGACCATGGCG 62.139 63.158 13.04 8.71 0.00 5.69
4491 7261 1.592669 CATCTCGTCGGACCATGGC 60.593 63.158 13.04 4.47 0.00 4.40
4492 7262 1.068083 CCATCTCGTCGGACCATGG 59.932 63.158 11.19 11.19 0.00 3.66
4493 7263 1.592669 GCCATCTCGTCGGACCATG 60.593 63.158 1.91 2.89 0.00 3.66
4494 7264 2.797278 GGCCATCTCGTCGGACCAT 61.797 63.158 0.00 0.00 0.00 3.55
4495 7265 3.458163 GGCCATCTCGTCGGACCA 61.458 66.667 0.00 0.00 0.00 4.02
4496 7266 4.570663 CGGCCATCTCGTCGGACC 62.571 72.222 2.24 0.00 0.00 4.46
4497 7267 3.471244 CTCGGCCATCTCGTCGGAC 62.471 68.421 2.24 0.00 0.00 4.79
4498 7268 3.209812 CTCGGCCATCTCGTCGGA 61.210 66.667 2.24 0.00 0.00 4.55
4499 7269 4.933064 GCTCGGCCATCTCGTCGG 62.933 72.222 2.24 0.00 0.00 4.79
4500 7270 3.699955 TTGCTCGGCCATCTCGTCG 62.700 63.158 2.24 0.00 0.00 5.12
4501 7271 2.167861 GTTGCTCGGCCATCTCGTC 61.168 63.158 2.24 0.00 0.00 4.20
4502 7272 2.125512 GTTGCTCGGCCATCTCGT 60.126 61.111 2.24 0.00 0.00 4.18
4503 7273 2.125552 TGTTGCTCGGCCATCTCG 60.126 61.111 2.24 0.00 0.00 4.04
4504 7274 1.817099 CCTGTTGCTCGGCCATCTC 60.817 63.158 2.24 0.00 0.00 2.75
4505 7275 2.270205 CCTGTTGCTCGGCCATCT 59.730 61.111 2.24 0.00 0.00 2.90
4506 7276 2.825836 CCCTGTTGCTCGGCCATC 60.826 66.667 2.24 0.00 0.00 3.51
4510 7280 3.512516 GATGCCCTGTTGCTCGGC 61.513 66.667 0.00 0.00 43.32 5.54
4511 7281 2.825836 GGATGCCCTGTTGCTCGG 60.826 66.667 0.00 0.00 0.00 4.63
4512 7282 2.270205 AGGATGCCCTGTTGCTCG 59.730 61.111 0.00 0.00 42.42 5.03
4520 7290 1.005289 ATGGACTCCAGGATGCCCT 59.995 57.895 3.62 0.00 45.74 5.19
4521 7291 1.453669 GATGGACTCCAGGATGCCC 59.546 63.158 3.62 1.10 36.75 5.36
4522 7292 1.453669 GGATGGACTCCAGGATGCC 59.546 63.158 3.62 0.00 44.26 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.