Multiple sequence alignment - TraesCS4A01G110500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G110500 chr4A 100.000 2492 0 0 1 2492 135212477 135214968 0.000000e+00 4602.0
1 TraesCS4A01G110500 chr4A 92.597 905 65 2 1360 2263 135318635 135319538 0.000000e+00 1299.0
2 TraesCS4A01G110500 chr4A 88.804 920 92 8 431 1350 135234831 135235739 0.000000e+00 1118.0
3 TraesCS4A01G110500 chr4A 91.315 426 32 3 6 430 289875520 289875941 5.980000e-161 577.0
4 TraesCS4A01G110500 chr4A 90.575 435 29 6 4 428 475349138 475348706 1.290000e-157 566.0
5 TraesCS4A01G110500 chr6A 87.275 778 85 13 1717 2487 313235330 313234560 0.000000e+00 876.0
6 TraesCS4A01G110500 chr6A 91.498 494 36 6 1717 2206 313054959 313054468 0.000000e+00 675.0
7 TraesCS4A01G110500 chr6A 89.908 436 33 9 1 430 89022864 89022434 3.620000e-153 551.0
8 TraesCS4A01G110500 chr1A 91.694 614 44 7 1664 2273 147800122 147799512 0.000000e+00 845.0
9 TraesCS4A01G110500 chr1A 79.289 1125 165 53 1311 2395 209912940 209914036 0.000000e+00 725.0
10 TraesCS4A01G110500 chr1A 77.373 1043 166 57 1451 2460 209929499 209930504 2.800000e-154 555.0
11 TraesCS4A01G110500 chr1A 90.141 71 4 3 1062 1132 48109064 48109131 3.410000e-14 89.8
12 TraesCS4A01G110500 chr1A 90.741 54 5 0 1132 1185 345683766 345683713 3.440000e-09 73.1
13 TraesCS4A01G110500 chr5D 84.651 873 98 29 1549 2407 163620957 163621807 0.000000e+00 837.0
14 TraesCS4A01G110500 chr5D 87.798 336 37 4 2157 2492 139508671 139508340 8.360000e-105 390.0
15 TraesCS4A01G110500 chr7B 90.593 489 35 7 1645 2124 330939544 330939058 2.700000e-179 638.0
16 TraesCS4A01G110500 chr7B 86.992 123 13 3 1209 1329 539555026 539555147 4.320000e-28 135.0
17 TraesCS4A01G110500 chr7A 80.833 840 119 39 1653 2470 355761731 355760912 2.720000e-174 621.0
18 TraesCS4A01G110500 chr7A 91.435 432 31 5 1 430 539706009 539705582 2.760000e-164 588.0
19 TraesCS4A01G110500 chr7A 82.329 249 35 7 434 678 286108346 286108103 9.030000e-50 207.0
20 TraesCS4A01G110500 chr2A 91.572 439 25 10 1 430 744547949 744547514 1.650000e-166 595.0
21 TraesCS4A01G110500 chr2A 86.463 229 28 3 467 695 424977183 424977408 5.320000e-62 248.0
22 TraesCS4A01G110500 chr2A 84.800 125 11 7 1476 1595 405463531 405463652 4.350000e-23 119.0
23 TraesCS4A01G110500 chr2A 84.000 125 12 7 1476 1595 395718831 395718710 2.030000e-21 113.0
24 TraesCS4A01G110500 chr3A 91.096 438 28 7 1 430 56533113 56533547 1.280000e-162 582.0
25 TraesCS4A01G110500 chr3A 89.545 440 34 8 1 430 624036930 624036493 4.690000e-152 547.0
26 TraesCS4A01G110500 chr4D 81.283 764 96 35 1655 2393 265750310 265749569 2.150000e-160 575.0
27 TraesCS4A01G110500 chr4D 77.732 485 67 29 434 890 314699708 314700179 2.460000e-65 259.0
28 TraesCS4A01G110500 chr4D 88.995 209 23 0 992 1200 399473947 399474155 2.460000e-65 259.0
29 TraesCS4A01G110500 chr4D 78.522 433 57 25 482 890 314691742 314692162 4.110000e-63 252.0
30 TraesCS4A01G110500 chr4D 81.618 272 39 7 463 726 128868060 128867792 5.400000e-52 215.0
31 TraesCS4A01G110500 chr4D 81.618 272 39 7 463 726 128876217 128875949 5.400000e-52 215.0
32 TraesCS4A01G110500 chr4D 97.521 121 3 0 1080 1200 37170270 37170390 9.030000e-50 207.0
33 TraesCS4A01G110500 chr4D 97.521 121 3 0 1080 1200 296736093 296736213 9.030000e-50 207.0
34 TraesCS4A01G110500 chr4D 95.868 121 5 0 1080 1200 37162271 37162391 1.960000e-46 196.0
35 TraesCS4A01G110500 chr4D 80.292 274 41 9 463 728 219070153 219069885 7.030000e-46 195.0
36 TraesCS4A01G110500 chr4D 95.041 121 6 0 1080 1200 196483832 196483952 9.100000e-45 191.0
37 TraesCS4A01G110500 chr4D 79.927 274 42 9 463 728 219078240 219077972 3.270000e-44 189.0
38 TraesCS4A01G110500 chr4D 80.208 96 6 10 1536 1620 335435300 335435393 2.680000e-05 60.2
39 TraesCS4A01G110500 chr1D 89.815 432 32 10 1 428 452081299 452081722 6.060000e-151 544.0
40 TraesCS4A01G110500 chr1D 89.573 211 22 0 992 1202 390439962 390439752 4.090000e-68 268.0
41 TraesCS4A01G110500 chr1D 77.367 433 62 26 482 890 390440382 390439962 8.970000e-55 224.0
42 TraesCS4A01G110500 chr2D 89.245 437 36 10 1 430 282361548 282361116 1.010000e-148 536.0
43 TraesCS4A01G110500 chr2D 79.300 343 36 15 482 790 347237950 347238291 9.030000e-50 207.0
44 TraesCS4A01G110500 chr2D 96.694 121 4 0 1080 1200 282840906 282841026 4.200000e-48 202.0
45 TraesCS4A01G110500 chr2D 88.073 109 11 2 1222 1329 260843835 260843728 7.230000e-26 128.0
46 TraesCS4A01G110500 chr1B 78.070 798 146 27 1701 2480 281610946 281611732 6.240000e-131 477.0
47 TraesCS4A01G110500 chr1B 84.866 337 49 2 994 1329 203820520 203820855 3.070000e-89 339.0
48 TraesCS4A01G110500 chr1B 81.818 154 23 5 1178 1329 207308641 207308791 9.360000e-25 124.0
49 TraesCS4A01G110500 chr1B 81.169 154 25 4 1178 1329 207284694 207284845 1.210000e-23 121.0
50 TraesCS4A01G110500 chr1B 80.645 155 24 6 1178 1329 207276772 207276923 5.630000e-22 115.0
51 TraesCS4A01G110500 chr1B 100.000 42 0 0 871 912 492677598 492677639 7.390000e-11 78.7
52 TraesCS4A01G110500 chr1B 89.474 57 6 0 1266 1322 543102751 543102695 3.440000e-09 73.1
53 TraesCS4A01G110500 chr1B 87.755 49 6 0 1274 1322 543094931 543094883 9.630000e-05 58.4
54 TraesCS4A01G110500 chr3D 87.578 322 30 10 2177 2492 234586013 234585696 5.070000e-97 364.0
55 TraesCS4A01G110500 chr3D 96.694 121 4 0 1080 1200 314002329 314002209 4.200000e-48 202.0
56 TraesCS4A01G110500 chr3D 94.958 119 6 0 1080 1198 468927188 468927306 1.180000e-43 187.0
57 TraesCS4A01G110500 chr3D 93.277 119 8 0 1080 1198 468935306 468935424 2.550000e-40 176.0
58 TraesCS4A01G110500 chr3D 78.302 106 10 10 1547 1641 158262459 158262356 3.460000e-04 56.5
59 TraesCS4A01G110500 chr2B 81.264 459 52 12 482 908 610890410 610889954 8.540000e-90 340.0
60 TraesCS4A01G110500 chr2B 79.960 499 69 25 435 912 316396909 316396421 3.070000e-89 339.0
61 TraesCS4A01G110500 chr2B 88.168 262 30 1 648 908 610882570 610882309 6.690000e-81 311.0
62 TraesCS4A01G110500 chr4B 76.225 694 118 34 1608 2265 234079914 234080596 8.600000e-85 324.0
63 TraesCS4A01G110500 chr4B 82.840 338 58 0 992 1329 210921013 210920676 1.120000e-78 303.0
64 TraesCS4A01G110500 chr4B 89.744 195 20 0 481 675 298049329 298049523 1.480000e-62 250.0
65 TraesCS4A01G110500 chr4B 90.722 97 9 0 816 912 74105029 74104933 2.010000e-26 130.0
66 TraesCS4A01G110500 chr4B 92.045 88 7 0 796 883 483054279 483054192 9.360000e-25 124.0
67 TraesCS4A01G110500 chr7D 78.351 485 66 27 434 890 511369945 511370418 6.790000e-71 278.0
68 TraesCS4A01G110500 chr7D 90.431 209 20 0 992 1200 511370418 511370626 2.440000e-70 276.0
69 TraesCS4A01G110500 chr7D 77.374 495 62 30 434 890 511362475 511362957 5.320000e-62 248.0
70 TraesCS4A01G110500 chr7D 87.500 80 4 5 1596 1671 182009618 182009541 1.230000e-13 87.9
71 TraesCS4A01G110500 chr7D 79.439 107 9 10 1543 1638 323125325 323125429 2.070000e-06 63.9
72 TraesCS4A01G110500 chr6D 77.113 485 61 37 434 890 179561680 179562142 4.140000e-58 235.0
73 TraesCS4A01G110500 chr6B 84.848 198 30 0 715 912 371187125 371187322 1.510000e-47 200.0
74 TraesCS4A01G110500 chr6B 91.228 57 5 0 1266 1322 333224490 333224546 7.390000e-11 78.7
75 TraesCS4A01G110500 chr5B 85.638 188 27 0 992 1179 186725145 186724958 5.440000e-47 198.0
76 TraesCS4A01G110500 chr5B 81.893 243 35 7 432 669 192597749 192597987 1.960000e-46 196.0
77 TraesCS4A01G110500 chr5B 86.992 123 13 3 1209 1329 645954747 645954626 4.320000e-28 135.0
78 TraesCS4A01G110500 chr5B 85.366 123 15 3 1209 1329 613486640 613486519 9.360000e-25 124.0
79 TraesCS4A01G110500 chr5B 91.566 83 6 1 831 912 524257638 524257720 2.030000e-21 113.0
80 TraesCS4A01G110500 chr5B 100.000 42 0 0 871 912 340450594 340450635 7.390000e-11 78.7
81 TraesCS4A01G110500 chr5B 91.228 57 5 0 1266 1322 683491041 683490985 7.390000e-11 78.7
82 TraesCS4A01G110500 chr5B 95.238 42 2 0 871 912 340458434 340458475 1.600000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G110500 chr4A 135212477 135214968 2491 False 4602 4602 100.000 1 2492 1 chr4A.!!$F1 2491
1 TraesCS4A01G110500 chr4A 135318635 135319538 903 False 1299 1299 92.597 1360 2263 1 chr4A.!!$F3 903
2 TraesCS4A01G110500 chr4A 135234831 135235739 908 False 1118 1118 88.804 431 1350 1 chr4A.!!$F2 919
3 TraesCS4A01G110500 chr6A 313234560 313235330 770 True 876 876 87.275 1717 2487 1 chr6A.!!$R3 770
4 TraesCS4A01G110500 chr1A 147799512 147800122 610 True 845 845 91.694 1664 2273 1 chr1A.!!$R1 609
5 TraesCS4A01G110500 chr1A 209912940 209914036 1096 False 725 725 79.289 1311 2395 1 chr1A.!!$F2 1084
6 TraesCS4A01G110500 chr1A 209929499 209930504 1005 False 555 555 77.373 1451 2460 1 chr1A.!!$F3 1009
7 TraesCS4A01G110500 chr5D 163620957 163621807 850 False 837 837 84.651 1549 2407 1 chr5D.!!$F1 858
8 TraesCS4A01G110500 chr7A 355760912 355761731 819 True 621 621 80.833 1653 2470 1 chr7A.!!$R2 817
9 TraesCS4A01G110500 chr4D 265749569 265750310 741 True 575 575 81.283 1655 2393 1 chr4D.!!$R5 738
10 TraesCS4A01G110500 chr1D 390439752 390440382 630 True 246 268 83.470 482 1202 2 chr1D.!!$R1 720
11 TraesCS4A01G110500 chr1B 281610946 281611732 786 False 477 477 78.070 1701 2480 1 chr1B.!!$F5 779
12 TraesCS4A01G110500 chr4B 234079914 234080596 682 False 324 324 76.225 1608 2265 1 chr4B.!!$F1 657
13 TraesCS4A01G110500 chr7D 511369945 511370626 681 False 277 278 84.391 434 1200 2 chr7D.!!$F3 766

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.038159 AGTCTCGTCCCGAAAGCTTG 60.038 55.0 0.0 0.0 34.74 4.01 F
309 310 0.105658 TAGCTACCGGCATTCTCCCT 60.106 55.0 0.0 0.0 44.79 4.20 F
1251 1301 0.038251 TGTTGCTACTGCCGACTCTG 60.038 55.0 0.0 0.0 38.71 3.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1227 1277 0.105964 TCGGCAGTAGCAACAACTGT 59.894 50.0 5.25 0.0 45.01 3.55 R
1367 1420 0.326238 GACCATGACCCCACCTCCTA 60.326 60.0 0.00 0.0 0.00 2.94 R
2439 2556 1.124780 TCCTCTTGTCCAACGAACCA 58.875 50.0 0.00 0.0 0.00 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.899239 CCTCATGGCGGCGGAGTC 62.899 72.222 22.85 0.00 0.00 3.36
22 23 3.842923 CTCATGGCGGCGGAGTCT 61.843 66.667 18.54 0.00 0.00 3.24
23 24 3.781770 CTCATGGCGGCGGAGTCTC 62.782 68.421 18.54 0.00 0.00 3.36
31 32 3.437795 GCGGAGTCTCGTCCCGAA 61.438 66.667 0.00 0.00 45.58 4.30
32 33 2.986306 GCGGAGTCTCGTCCCGAAA 61.986 63.158 0.00 0.00 45.58 3.46
33 34 1.136984 CGGAGTCTCGTCCCGAAAG 59.863 63.158 0.00 0.00 45.58 2.62
34 35 1.153804 GGAGTCTCGTCCCGAAAGC 60.154 63.158 0.00 0.00 34.74 3.51
35 36 1.596895 GGAGTCTCGTCCCGAAAGCT 61.597 60.000 0.00 0.00 34.74 3.74
36 37 0.244178 GAGTCTCGTCCCGAAAGCTT 59.756 55.000 0.00 0.00 34.74 3.74
37 38 0.038159 AGTCTCGTCCCGAAAGCTTG 60.038 55.000 0.00 0.00 34.74 4.01
38 39 0.319641 GTCTCGTCCCGAAAGCTTGT 60.320 55.000 0.00 0.00 34.74 3.16
39 40 0.391597 TCTCGTCCCGAAAGCTTGTT 59.608 50.000 0.00 0.00 34.74 2.83
40 41 1.202604 TCTCGTCCCGAAAGCTTGTTT 60.203 47.619 0.00 0.00 34.74 2.83
41 42 2.036217 TCTCGTCCCGAAAGCTTGTTTA 59.964 45.455 0.00 0.00 34.74 2.01
42 43 3.000727 CTCGTCCCGAAAGCTTGTTTAT 58.999 45.455 0.00 0.00 34.74 1.40
43 44 2.739913 TCGTCCCGAAAGCTTGTTTATG 59.260 45.455 0.00 0.00 31.06 1.90
44 45 2.739913 CGTCCCGAAAGCTTGTTTATGA 59.260 45.455 0.00 0.00 0.00 2.15
45 46 3.374058 CGTCCCGAAAGCTTGTTTATGAT 59.626 43.478 0.00 0.00 0.00 2.45
46 47 4.142687 CGTCCCGAAAGCTTGTTTATGATT 60.143 41.667 0.00 0.00 0.00 2.57
47 48 5.619086 CGTCCCGAAAGCTTGTTTATGATTT 60.619 40.000 0.00 0.00 0.00 2.17
48 49 6.156519 GTCCCGAAAGCTTGTTTATGATTTT 58.843 36.000 0.00 0.00 0.00 1.82
49 50 6.645003 GTCCCGAAAGCTTGTTTATGATTTTT 59.355 34.615 0.00 0.00 0.00 1.94
73 74 8.843308 TTTTTCCTCAATGAAAGATCCCATAT 57.157 30.769 0.00 0.00 35.77 1.78
74 75 9.934784 TTTTTCCTCAATGAAAGATCCCATATA 57.065 29.630 0.00 0.00 35.77 0.86
75 76 9.578576 TTTTCCTCAATGAAAGATCCCATATAG 57.421 33.333 0.00 0.00 35.77 1.31
76 77 6.715280 TCCTCAATGAAAGATCCCATATAGC 58.285 40.000 0.00 0.00 0.00 2.97
77 78 6.273026 TCCTCAATGAAAGATCCCATATAGCA 59.727 38.462 0.00 0.00 0.00 3.49
78 79 6.598457 CCTCAATGAAAGATCCCATATAGCAG 59.402 42.308 0.00 0.00 0.00 4.24
79 80 7.320384 TCAATGAAAGATCCCATATAGCAGA 57.680 36.000 0.00 0.00 0.00 4.26
80 81 7.748677 TCAATGAAAGATCCCATATAGCAGAA 58.251 34.615 0.00 0.00 0.00 3.02
81 82 7.881751 TCAATGAAAGATCCCATATAGCAGAAG 59.118 37.037 0.00 0.00 0.00 2.85
82 83 7.565190 ATGAAAGATCCCATATAGCAGAAGA 57.435 36.000 0.00 0.00 0.00 2.87
83 84 7.565190 TGAAAGATCCCATATAGCAGAAGAT 57.435 36.000 0.00 0.00 0.00 2.40
84 85 7.392418 TGAAAGATCCCATATAGCAGAAGATG 58.608 38.462 0.00 0.00 0.00 2.90
85 86 5.954153 AGATCCCATATAGCAGAAGATGG 57.046 43.478 0.00 1.54 38.89 3.51
88 89 3.708403 CCATATAGCAGAAGATGGGCA 57.292 47.619 0.73 0.00 36.06 5.36
89 90 4.232188 CCATATAGCAGAAGATGGGCAT 57.768 45.455 0.73 0.00 36.06 4.40
90 91 4.197750 CCATATAGCAGAAGATGGGCATC 58.802 47.826 0.00 0.00 36.06 3.91
91 92 2.469274 ATAGCAGAAGATGGGCATCG 57.531 50.000 0.00 0.00 42.48 3.84
92 93 0.394192 TAGCAGAAGATGGGCATCGG 59.606 55.000 0.00 0.00 42.48 4.18
93 94 1.146930 GCAGAAGATGGGCATCGGA 59.853 57.895 0.00 0.00 42.48 4.55
94 95 0.883814 GCAGAAGATGGGCATCGGAG 60.884 60.000 0.00 0.00 42.48 4.63
95 96 0.250209 CAGAAGATGGGCATCGGAGG 60.250 60.000 0.00 0.00 42.48 4.30
96 97 1.072159 GAAGATGGGCATCGGAGGG 59.928 63.158 0.00 0.00 42.48 4.30
97 98 3.125376 AAGATGGGCATCGGAGGGC 62.125 63.158 7.77 7.77 42.48 5.19
103 104 4.864334 GCATCGGAGGGCCACCAG 62.864 72.222 20.43 12.43 40.13 4.00
104 105 4.181010 CATCGGAGGGCCACCAGG 62.181 72.222 20.43 4.68 40.13 4.45
146 147 3.470888 CCAGGAGGGTAGGGCGTG 61.471 72.222 0.00 0.00 0.00 5.34
147 148 4.162690 CAGGAGGGTAGGGCGTGC 62.163 72.222 0.00 0.00 0.00 5.34
160 161 4.704833 CGTGCCCCCACCTGAGTG 62.705 72.222 0.00 0.00 44.12 3.51
170 171 3.922366 CCTGAGTGGTCCCCCTTT 58.078 61.111 0.00 0.00 0.00 3.11
171 172 1.380302 CCTGAGTGGTCCCCCTTTG 59.620 63.158 0.00 0.00 0.00 2.77
172 173 1.133809 CCTGAGTGGTCCCCCTTTGA 61.134 60.000 0.00 0.00 0.00 2.69
173 174 0.995024 CTGAGTGGTCCCCCTTTGAT 59.005 55.000 0.00 0.00 0.00 2.57
174 175 2.196595 CTGAGTGGTCCCCCTTTGATA 58.803 52.381 0.00 0.00 0.00 2.15
175 176 1.913419 TGAGTGGTCCCCCTTTGATAC 59.087 52.381 0.00 0.00 0.00 2.24
176 177 2.197465 GAGTGGTCCCCCTTTGATACT 58.803 52.381 0.00 0.00 0.00 2.12
177 178 2.576648 GAGTGGTCCCCCTTTGATACTT 59.423 50.000 0.00 0.00 0.00 2.24
178 179 2.576648 AGTGGTCCCCCTTTGATACTTC 59.423 50.000 0.00 0.00 0.00 3.01
179 180 2.576648 GTGGTCCCCCTTTGATACTTCT 59.423 50.000 0.00 0.00 0.00 2.85
180 181 3.010250 GTGGTCCCCCTTTGATACTTCTT 59.990 47.826 0.00 0.00 0.00 2.52
181 182 3.010138 TGGTCCCCCTTTGATACTTCTTG 59.990 47.826 0.00 0.00 0.00 3.02
182 183 3.017442 GTCCCCCTTTGATACTTCTTGC 58.983 50.000 0.00 0.00 0.00 4.01
183 184 2.017049 CCCCCTTTGATACTTCTTGCG 58.983 52.381 0.00 0.00 0.00 4.85
184 185 1.401905 CCCCTTTGATACTTCTTGCGC 59.598 52.381 0.00 0.00 0.00 6.09
185 186 2.359900 CCCTTTGATACTTCTTGCGCT 58.640 47.619 9.73 0.00 0.00 5.92
186 187 2.352960 CCCTTTGATACTTCTTGCGCTC 59.647 50.000 9.73 0.00 0.00 5.03
187 188 3.002791 CCTTTGATACTTCTTGCGCTCA 58.997 45.455 9.73 0.00 0.00 4.26
188 189 3.063180 CCTTTGATACTTCTTGCGCTCAG 59.937 47.826 9.73 4.70 0.00 3.35
189 190 3.319137 TTGATACTTCTTGCGCTCAGT 57.681 42.857 9.73 7.75 0.00 3.41
190 191 4.450082 TTGATACTTCTTGCGCTCAGTA 57.550 40.909 9.73 9.79 0.00 2.74
191 192 4.655762 TGATACTTCTTGCGCTCAGTAT 57.344 40.909 9.73 14.07 35.56 2.12
192 193 5.011090 TGATACTTCTTGCGCTCAGTATT 57.989 39.130 9.73 0.00 33.47 1.89
193 194 5.419542 TGATACTTCTTGCGCTCAGTATTT 58.580 37.500 9.73 0.00 33.47 1.40
194 195 5.874810 TGATACTTCTTGCGCTCAGTATTTT 59.125 36.000 9.73 0.00 33.47 1.82
195 196 6.371548 TGATACTTCTTGCGCTCAGTATTTTT 59.628 34.615 9.73 0.00 33.47 1.94
234 235 3.113260 CTTCCGTGAAGTTTCAGGACT 57.887 47.619 14.26 0.00 43.66 3.85
235 236 3.467803 CTTCCGTGAAGTTTCAGGACTT 58.532 45.455 14.26 0.00 43.66 3.01
236 237 3.553828 TCCGTGAAGTTTCAGGACTTT 57.446 42.857 14.26 0.00 43.66 2.66
237 238 3.881220 TCCGTGAAGTTTCAGGACTTTT 58.119 40.909 14.26 0.00 43.66 2.27
238 239 3.625764 TCCGTGAAGTTTCAGGACTTTTG 59.374 43.478 14.26 0.00 43.66 2.44
239 240 3.243068 CCGTGAAGTTTCAGGACTTTTGG 60.243 47.826 14.26 0.00 43.66 3.28
240 241 3.625764 CGTGAAGTTTCAGGACTTTTGGA 59.374 43.478 8.46 0.00 43.66 3.53
241 242 4.260784 CGTGAAGTTTCAGGACTTTTGGAG 60.261 45.833 8.46 0.00 43.66 3.86
242 243 3.632145 TGAAGTTTCAGGACTTTTGGAGC 59.368 43.478 0.00 0.00 39.84 4.70
243 244 3.584733 AGTTTCAGGACTTTTGGAGCT 57.415 42.857 0.00 0.00 0.00 4.09
244 245 3.217626 AGTTTCAGGACTTTTGGAGCTG 58.782 45.455 0.00 0.00 0.00 4.24
245 246 2.952310 GTTTCAGGACTTTTGGAGCTGT 59.048 45.455 0.00 0.00 0.00 4.40
246 247 2.260844 TCAGGACTTTTGGAGCTGTG 57.739 50.000 0.00 0.00 0.00 3.66
247 248 0.595095 CAGGACTTTTGGAGCTGTGC 59.405 55.000 0.00 0.00 0.00 4.57
248 249 0.183492 AGGACTTTTGGAGCTGTGCA 59.817 50.000 0.00 0.00 0.00 4.57
249 250 0.595095 GGACTTTTGGAGCTGTGCAG 59.405 55.000 0.00 0.00 0.00 4.41
250 251 1.597742 GACTTTTGGAGCTGTGCAGA 58.402 50.000 3.02 0.00 0.00 4.26
251 252 1.949525 GACTTTTGGAGCTGTGCAGAA 59.050 47.619 3.02 0.00 0.00 3.02
252 253 2.555757 GACTTTTGGAGCTGTGCAGAAT 59.444 45.455 3.02 0.00 0.00 2.40
253 254 3.753272 GACTTTTGGAGCTGTGCAGAATA 59.247 43.478 3.02 0.00 0.00 1.75
254 255 3.755378 ACTTTTGGAGCTGTGCAGAATAG 59.245 43.478 3.02 0.00 0.00 1.73
255 256 2.408271 TTGGAGCTGTGCAGAATAGG 57.592 50.000 3.02 0.00 0.00 2.57
256 257 1.279496 TGGAGCTGTGCAGAATAGGT 58.721 50.000 3.02 0.00 0.00 3.08
257 258 1.208052 TGGAGCTGTGCAGAATAGGTC 59.792 52.381 3.02 9.60 42.14 3.85
258 259 1.946745 GAGCTGTGCAGAATAGGTCC 58.053 55.000 3.02 0.00 38.27 4.46
259 260 0.543749 AGCTGTGCAGAATAGGTCCC 59.456 55.000 3.02 0.00 0.00 4.46
260 261 0.543749 GCTGTGCAGAATAGGTCCCT 59.456 55.000 3.02 0.00 0.00 4.20
261 262 1.762957 GCTGTGCAGAATAGGTCCCTA 59.237 52.381 3.02 0.00 0.00 3.53
262 263 2.170607 GCTGTGCAGAATAGGTCCCTAA 59.829 50.000 3.02 0.00 31.73 2.69
263 264 3.181450 GCTGTGCAGAATAGGTCCCTAAT 60.181 47.826 3.02 0.00 31.73 1.73
264 265 4.040461 GCTGTGCAGAATAGGTCCCTAATA 59.960 45.833 3.02 0.00 31.73 0.98
265 266 5.280215 GCTGTGCAGAATAGGTCCCTAATAT 60.280 44.000 3.02 0.00 31.73 1.28
266 267 6.745474 GCTGTGCAGAATAGGTCCCTAATATT 60.745 42.308 3.02 0.00 31.73 1.28
267 268 7.149202 TGTGCAGAATAGGTCCCTAATATTT 57.851 36.000 0.00 0.00 31.73 1.40
268 269 6.998074 TGTGCAGAATAGGTCCCTAATATTTG 59.002 38.462 0.00 0.00 31.73 2.32
269 270 6.003950 TGCAGAATAGGTCCCTAATATTTGC 58.996 40.000 0.00 5.28 31.73 3.68
270 271 6.183361 TGCAGAATAGGTCCCTAATATTTGCT 60.183 38.462 14.79 0.00 31.57 3.91
271 272 6.372937 GCAGAATAGGTCCCTAATATTTGCTC 59.627 42.308 0.00 0.00 31.73 4.26
272 273 6.881602 CAGAATAGGTCCCTAATATTTGCTCC 59.118 42.308 0.00 0.00 31.73 4.70
273 274 6.795000 AGAATAGGTCCCTAATATTTGCTCCT 59.205 38.462 0.00 2.75 31.73 3.69
274 275 7.295911 AGAATAGGTCCCTAATATTTGCTCCTT 59.704 37.037 0.00 0.00 31.73 3.36
275 276 5.734031 AGGTCCCTAATATTTGCTCCTTT 57.266 39.130 0.00 0.00 0.00 3.11
276 277 6.092346 AGGTCCCTAATATTTGCTCCTTTT 57.908 37.500 0.00 0.00 0.00 2.27
277 278 6.129874 AGGTCCCTAATATTTGCTCCTTTTC 58.870 40.000 0.00 0.00 0.00 2.29
278 279 5.891551 GGTCCCTAATATTTGCTCCTTTTCA 59.108 40.000 0.00 0.00 0.00 2.69
279 280 6.039829 GGTCCCTAATATTTGCTCCTTTTCAG 59.960 42.308 0.00 0.00 0.00 3.02
280 281 5.594317 TCCCTAATATTTGCTCCTTTTCAGC 59.406 40.000 0.00 0.00 37.40 4.26
281 282 5.221322 CCCTAATATTTGCTCCTTTTCAGCC 60.221 44.000 0.00 0.00 35.89 4.85
282 283 4.743057 AATATTTGCTCCTTTTCAGCCC 57.257 40.909 0.00 0.00 35.89 5.19
283 284 2.014010 ATTTGCTCCTTTTCAGCCCA 57.986 45.000 0.00 0.00 35.89 5.36
284 285 1.331214 TTTGCTCCTTTTCAGCCCAG 58.669 50.000 0.00 0.00 35.89 4.45
285 286 0.478072 TTGCTCCTTTTCAGCCCAGA 59.522 50.000 0.00 0.00 35.89 3.86
286 287 0.478072 TGCTCCTTTTCAGCCCAGAA 59.522 50.000 0.00 0.00 35.89 3.02
287 288 1.076024 TGCTCCTTTTCAGCCCAGAAT 59.924 47.619 0.00 0.00 35.89 2.40
288 289 1.747924 GCTCCTTTTCAGCCCAGAATC 59.252 52.381 0.00 0.00 0.00 2.52
289 290 2.373224 CTCCTTTTCAGCCCAGAATCC 58.627 52.381 0.00 0.00 0.00 3.01
290 291 1.995542 TCCTTTTCAGCCCAGAATCCT 59.004 47.619 0.00 0.00 0.00 3.24
291 292 3.189606 TCCTTTTCAGCCCAGAATCCTA 58.810 45.455 0.00 0.00 0.00 2.94
292 293 3.200825 TCCTTTTCAGCCCAGAATCCTAG 59.799 47.826 0.00 0.00 0.00 3.02
293 294 2.717639 TTTCAGCCCAGAATCCTAGC 57.282 50.000 0.00 0.00 0.00 3.42
294 295 1.885049 TTCAGCCCAGAATCCTAGCT 58.115 50.000 0.00 0.00 33.08 3.32
295 296 2.775490 TCAGCCCAGAATCCTAGCTA 57.225 50.000 0.00 0.00 32.04 3.32
296 297 2.320781 TCAGCCCAGAATCCTAGCTAC 58.679 52.381 0.00 0.00 32.04 3.58
297 298 1.346068 CAGCCCAGAATCCTAGCTACC 59.654 57.143 0.00 0.00 32.04 3.18
298 299 0.318762 GCCCAGAATCCTAGCTACCG 59.681 60.000 0.00 0.00 0.00 4.02
299 300 0.969894 CCCAGAATCCTAGCTACCGG 59.030 60.000 0.00 0.00 0.00 5.28
300 301 0.318762 CCAGAATCCTAGCTACCGGC 59.681 60.000 0.00 0.00 42.19 6.13
301 302 1.040646 CAGAATCCTAGCTACCGGCA 58.959 55.000 0.00 0.00 44.79 5.69
302 303 1.620819 CAGAATCCTAGCTACCGGCAT 59.379 52.381 0.00 0.00 44.79 4.40
303 304 2.037772 CAGAATCCTAGCTACCGGCATT 59.962 50.000 0.00 0.00 44.79 3.56
304 305 2.300437 AGAATCCTAGCTACCGGCATTC 59.700 50.000 0.00 11.86 44.79 2.67
305 306 2.016905 ATCCTAGCTACCGGCATTCT 57.983 50.000 0.00 0.00 44.79 2.40
306 307 1.329256 TCCTAGCTACCGGCATTCTC 58.671 55.000 0.00 0.00 44.79 2.87
307 308 0.318762 CCTAGCTACCGGCATTCTCC 59.681 60.000 0.00 0.00 44.79 3.71
308 309 0.318762 CTAGCTACCGGCATTCTCCC 59.681 60.000 0.00 0.00 44.79 4.30
309 310 0.105658 TAGCTACCGGCATTCTCCCT 60.106 55.000 0.00 0.00 44.79 4.20
310 311 1.069935 GCTACCGGCATTCTCCCTC 59.930 63.158 0.00 0.00 41.35 4.30
311 312 1.403687 GCTACCGGCATTCTCCCTCT 61.404 60.000 0.00 0.00 41.35 3.69
312 313 1.123928 CTACCGGCATTCTCCCTCTT 58.876 55.000 0.00 0.00 0.00 2.85
313 314 1.486726 CTACCGGCATTCTCCCTCTTT 59.513 52.381 0.00 0.00 0.00 2.52
314 315 1.580059 ACCGGCATTCTCCCTCTTTA 58.420 50.000 0.00 0.00 0.00 1.85
315 316 2.127708 ACCGGCATTCTCCCTCTTTAT 58.872 47.619 0.00 0.00 0.00 1.40
316 317 2.158755 ACCGGCATTCTCCCTCTTTATG 60.159 50.000 0.00 0.00 0.00 1.90
317 318 2.158755 CCGGCATTCTCCCTCTTTATGT 60.159 50.000 0.00 0.00 0.00 2.29
318 319 3.071023 CCGGCATTCTCCCTCTTTATGTA 59.929 47.826 0.00 0.00 0.00 2.29
319 320 4.444306 CCGGCATTCTCCCTCTTTATGTAA 60.444 45.833 0.00 0.00 0.00 2.41
320 321 5.123227 CGGCATTCTCCCTCTTTATGTAAA 58.877 41.667 0.00 0.00 0.00 2.01
321 322 5.007724 CGGCATTCTCCCTCTTTATGTAAAC 59.992 44.000 0.00 0.00 0.00 2.01
322 323 5.007724 GGCATTCTCCCTCTTTATGTAAACG 59.992 44.000 0.00 0.00 0.00 3.60
323 324 5.585047 GCATTCTCCCTCTTTATGTAAACGT 59.415 40.000 0.00 0.00 0.00 3.99
324 325 6.093633 GCATTCTCCCTCTTTATGTAAACGTT 59.906 38.462 0.00 0.00 0.00 3.99
325 326 7.464358 CATTCTCCCTCTTTATGTAAACGTTG 58.536 38.462 0.00 0.00 0.00 4.10
326 327 6.105397 TCTCCCTCTTTATGTAAACGTTGT 57.895 37.500 0.00 0.00 0.00 3.32
327 328 7.230849 TCTCCCTCTTTATGTAAACGTTGTA 57.769 36.000 0.00 0.00 0.00 2.41
328 329 7.669427 TCTCCCTCTTTATGTAAACGTTGTAA 58.331 34.615 0.00 0.00 0.00 2.41
329 330 8.149647 TCTCCCTCTTTATGTAAACGTTGTAAA 58.850 33.333 0.00 5.10 0.00 2.01
330 331 8.674263 TCCCTCTTTATGTAAACGTTGTAAAA 57.326 30.769 0.00 0.00 0.00 1.52
331 332 9.287373 TCCCTCTTTATGTAAACGTTGTAAAAT 57.713 29.630 0.00 0.00 0.00 1.82
345 346 8.421673 ACGTTGTAAAATAAGAGAGAATAGGC 57.578 34.615 0.00 0.00 0.00 3.93
346 347 8.038944 ACGTTGTAAAATAAGAGAGAATAGGCA 58.961 33.333 0.00 0.00 0.00 4.75
347 348 9.046296 CGTTGTAAAATAAGAGAGAATAGGCAT 57.954 33.333 0.00 0.00 0.00 4.40
358 359 8.484214 AGAGAGAATAGGCATAAGTATTGTGA 57.516 34.615 0.00 0.00 39.84 3.58
359 360 8.364142 AGAGAGAATAGGCATAAGTATTGTGAC 58.636 37.037 0.00 0.00 46.78 3.67
368 369 7.930217 GGCATAAGTATTGTGACATAATGTGT 58.070 34.615 7.62 0.00 45.57 3.72
369 370 9.051679 GGCATAAGTATTGTGACATAATGTGTA 57.948 33.333 7.62 0.00 45.57 2.90
379 380 8.046294 TGTGACATAATGTGTAATAACAACCC 57.954 34.615 0.00 0.00 42.36 4.11
380 381 7.665974 TGTGACATAATGTGTAATAACAACCCA 59.334 33.333 0.00 0.00 42.36 4.51
381 382 8.682710 GTGACATAATGTGTAATAACAACCCAT 58.317 33.333 0.00 0.00 42.36 4.00
382 383 9.907229 TGACATAATGTGTAATAACAACCCATA 57.093 29.630 0.00 0.00 42.36 2.74
387 388 7.652524 ATGTGTAATAACAACCCATAATGCA 57.347 32.000 0.00 0.00 37.36 3.96
388 389 7.468141 TGTGTAATAACAACCCATAATGCAA 57.532 32.000 0.00 0.00 37.36 4.08
389 390 8.072321 TGTGTAATAACAACCCATAATGCAAT 57.928 30.769 0.00 0.00 37.36 3.56
390 391 9.190317 TGTGTAATAACAACCCATAATGCAATA 57.810 29.630 0.00 0.00 37.36 1.90
398 399 8.402798 ACAACCCATAATGCAATAAATATCGA 57.597 30.769 0.00 0.00 0.00 3.59
399 400 9.023962 ACAACCCATAATGCAATAAATATCGAT 57.976 29.630 2.16 2.16 0.00 3.59
425 426 2.282701 GCATGATGCAAAATGGACGT 57.717 45.000 13.36 0.00 44.26 4.34
426 427 3.419264 GCATGATGCAAAATGGACGTA 57.581 42.857 13.36 0.00 44.26 3.57
427 428 3.968649 GCATGATGCAAAATGGACGTAT 58.031 40.909 13.36 0.00 44.26 3.06
428 429 3.976942 GCATGATGCAAAATGGACGTATC 59.023 43.478 13.36 0.00 44.26 2.24
429 430 4.497842 GCATGATGCAAAATGGACGTATCA 60.498 41.667 13.36 0.00 44.26 2.15
435 436 3.119849 GCAAAATGGACGTATCAGCAACT 60.120 43.478 0.00 0.00 0.00 3.16
449 450 2.203294 AACTGGGTTCCCACGTGC 60.203 61.111 10.91 0.00 32.02 5.34
454 455 3.998672 GGTTCCCACGTGCCGAGA 61.999 66.667 10.91 0.57 0.00 4.04
532 536 5.963176 TCTCATACAACACACATGCATTT 57.037 34.783 0.00 0.00 0.00 2.32
688 700 3.433615 CACATTTCGGAGAGGAACTTGAC 59.566 47.826 0.00 0.00 41.55 3.18
704 716 4.879598 ACTTGACGAATCCGAGTAACTTT 58.120 39.130 0.00 0.00 39.50 2.66
710 722 3.615592 CGAATCCGAGTAACTTTGGGTCA 60.616 47.826 0.00 0.00 38.22 4.02
731 743 2.229792 ACGGTAGTTGTACACGGAGAA 58.770 47.619 0.00 0.00 31.12 2.87
744 756 2.758979 CACGGAGAAGGTAGTGGTACAT 59.241 50.000 0.00 0.00 44.52 2.29
748 760 4.544683 GGAGAAGGTAGTGGTACATAGGT 58.455 47.826 0.00 0.00 44.52 3.08
759 809 3.505680 TGGTACATAGGTCGTACACGTTT 59.494 43.478 1.19 0.00 40.84 3.60
767 817 2.204237 GTCGTACACGTTTGGGTCTTT 58.796 47.619 1.19 0.00 40.80 2.52
769 819 1.262151 CGTACACGTTTGGGTCTTTGG 59.738 52.381 0.00 0.00 34.11 3.28
774 824 3.181448 ACACGTTTGGGTCTTTGGTAGAT 60.181 43.478 0.00 0.00 34.79 1.98
777 827 3.188460 CGTTTGGGTCTTTGGTAGATGTG 59.812 47.826 0.00 0.00 34.79 3.21
814 864 2.494870 GGTGTACTCGTACATGAGGGTT 59.505 50.000 12.51 0.00 46.36 4.11
927 977 1.739562 CGCAAGGAGGTGTGAGAGC 60.740 63.158 0.00 0.00 0.00 4.09
929 979 0.898320 GCAAGGAGGTGTGAGAGCTA 59.102 55.000 0.00 0.00 30.42 3.32
946 996 3.434309 AGCTAATGGTTTTGCATCCAGT 58.566 40.909 10.63 10.33 36.25 4.00
957 1007 6.095440 GGTTTTGCATCCAGTGATAGTAACAT 59.905 38.462 0.00 0.00 0.00 2.71
962 1012 4.753516 TCCAGTGATAGTAACATGGGTG 57.246 45.455 0.00 0.00 0.00 4.61
976 1026 2.663196 GGTGGACAAGGGGTCTCG 59.337 66.667 0.00 0.00 46.16 4.04
977 1027 1.911766 GGTGGACAAGGGGTCTCGA 60.912 63.158 0.00 0.00 46.16 4.04
1010 1060 3.224324 CGGGTCGATGGGGACGAT 61.224 66.667 0.00 0.00 41.62 3.73
1015 1065 0.174845 GTCGATGGGGACGATGACAA 59.825 55.000 0.00 0.00 41.62 3.18
1053 1103 1.304547 AGAGGCGTGGCTAGACTGT 60.305 57.895 0.00 0.00 0.00 3.55
1058 1108 1.989966 GCGTGGCTAGACTGTAGCGA 61.990 60.000 0.00 0.00 41.24 4.93
1074 1124 2.125512 GACAGCAGGACGGCGAAT 60.126 61.111 16.62 0.00 39.27 3.34
1078 1128 0.249447 CAGCAGGACGGCGAATGATA 60.249 55.000 16.62 0.00 39.27 2.15
1217 1267 1.156645 GGTGAGCACGAGATGGCATC 61.157 60.000 19.78 19.78 0.00 3.91
1218 1268 0.460811 GTGAGCACGAGATGGCATCA 60.461 55.000 27.93 4.61 0.00 3.07
1227 1277 2.603021 GAGATGGCATCAGAGAGGGTA 58.397 52.381 27.93 0.00 0.00 3.69
1239 1289 3.258372 CAGAGAGGGTACAGTTGTTGCTA 59.742 47.826 0.00 0.00 0.00 3.49
1240 1290 3.258622 AGAGAGGGTACAGTTGTTGCTAC 59.741 47.826 0.00 0.00 0.00 3.58
1251 1301 0.038251 TGTTGCTACTGCCGACTCTG 60.038 55.000 0.00 0.00 38.71 3.35
1253 1303 0.243907 TTGCTACTGCCGACTCTGAC 59.756 55.000 0.00 0.00 38.71 3.51
1266 1316 1.843851 ACTCTGACGGAGGAGAGATCT 59.156 52.381 15.76 0.00 45.83 2.75
1312 1362 2.439701 CGGGTAGACGAGGAGGCA 60.440 66.667 0.00 0.00 35.47 4.75
1381 1434 1.608336 CGTGTAGGAGGTGGGGTCA 60.608 63.158 0.00 0.00 0.00 4.02
1388 1441 2.203938 AGGTGGGGTCATGGTCGT 60.204 61.111 0.00 0.00 0.00 4.34
1390 1443 2.589157 GGTGGGGTCATGGTCGTGA 61.589 63.158 0.00 0.00 0.00 4.35
1449 1508 2.594592 AGGCGTTGGGTGCAGTTC 60.595 61.111 0.00 0.00 0.00 3.01
1505 1565 0.039346 GGTTAGGGATAGCGAGCGAC 60.039 60.000 0.00 0.00 0.00 5.19
1511 1571 0.040781 GGATAGCGAGCGACAGAGAC 60.041 60.000 0.00 0.00 0.00 3.36
1541 1601 3.325753 GTGGGGCTCTCTGGCAGT 61.326 66.667 15.27 0.00 43.83 4.40
1597 1657 2.235402 CAGAGGGTTCGCTAGGGTTAAA 59.765 50.000 6.70 0.00 0.00 1.52
1713 1777 9.674068 AAGAGTTAGACAGAAGAAAAGAAAAGT 57.326 29.630 0.00 0.00 0.00 2.66
1734 1813 6.464530 AGTAGGGTTAGGGAAAGAATTTGT 57.535 37.500 0.00 0.00 39.27 2.83
1742 1821 2.352617 GGGAAAGAATTTGTGCATGCGA 60.353 45.455 14.09 0.00 39.27 5.10
1824 1905 2.472695 TGGAGTTGAATTCCACCTCG 57.527 50.000 5.21 0.00 39.74 4.63
1835 1917 6.674066 TGAATTCCACCTCGTTTGAATTAAC 58.326 36.000 2.27 0.00 37.51 2.01
1894 1978 5.296531 GTGCCCAAAAATGTTGAGAATTTGT 59.703 36.000 0.00 0.00 30.89 2.83
2198 2306 6.568844 GCCATGATGAATGCAACAAACAAAAT 60.569 34.615 0.00 0.00 34.67 1.82
2253 2362 2.915659 TGGAGCGTCGGTCTTGGT 60.916 61.111 22.48 0.00 0.00 3.67
2328 2438 0.684805 ACCGGAGAGAAGCGGAAGAT 60.685 55.000 9.46 0.00 0.00 2.40
2332 2447 2.223923 CGGAGAGAAGCGGAAGATGAAT 60.224 50.000 0.00 0.00 0.00 2.57
2355 2470 9.181805 GAATAGGTAAAACAAAGTTGCTTCTTC 57.818 33.333 0.00 0.00 0.00 2.87
2363 2478 4.083003 ACAAAGTTGCTTCTTCGACAAACA 60.083 37.500 0.00 0.00 0.00 2.83
2401 2518 5.225642 CCTTGAGAGGTTGAAAAATCTTGC 58.774 41.667 0.00 0.00 38.32 4.01
2423 2540 5.049680 TGCAAGAAAAGAATACAACGGAGAC 60.050 40.000 0.00 0.00 0.00 3.36
2424 2541 5.049680 GCAAGAAAAGAATACAACGGAGACA 60.050 40.000 0.00 0.00 0.00 3.41
2439 2556 4.037923 ACGGAGACAAACAAGATTGCAAAT 59.962 37.500 1.71 0.00 33.52 2.32
2440 2557 4.383649 CGGAGACAAACAAGATTGCAAATG 59.616 41.667 1.71 5.95 33.52 2.32
2441 2558 4.687483 GGAGACAAACAAGATTGCAAATGG 59.313 41.667 1.71 0.00 33.52 3.16
2443 2560 5.673514 AGACAAACAAGATTGCAAATGGTT 58.326 33.333 1.71 5.44 33.52 3.67
2448 2565 4.050553 ACAAGATTGCAAATGGTTCGTTG 58.949 39.130 1.71 5.61 0.00 4.10
2451 2568 2.500509 TTGCAAATGGTTCGTTGGAC 57.499 45.000 0.00 0.00 0.00 4.02
2462 2579 3.139077 GTTCGTTGGACAAGAGGAACAT 58.861 45.455 13.89 0.00 0.00 2.71
2470 2587 5.439721 TGGACAAGAGGAACATGGAATATG 58.560 41.667 0.00 0.00 0.00 1.78
2472 2589 6.126390 TGGACAAGAGGAACATGGAATATGAT 60.126 38.462 0.00 0.00 0.00 2.45
2475 2592 7.524290 ACAAGAGGAACATGGAATATGATGAT 58.476 34.615 0.00 0.00 0.00 2.45
2484 2601 8.859236 ACATGGAATATGATGATAACCAAGAG 57.141 34.615 0.00 5.21 32.22 2.85
2487 2604 7.520798 TGGAATATGATGATAACCAAGAGCTT 58.479 34.615 0.00 0.00 0.00 3.74
2488 2605 8.659527 TGGAATATGATGATAACCAAGAGCTTA 58.340 33.333 0.00 0.00 0.00 3.09
2489 2606 9.160496 GGAATATGATGATAACCAAGAGCTTAG 57.840 37.037 0.00 0.00 0.00 2.18
2490 2607 9.160496 GAATATGATGATAACCAAGAGCTTAGG 57.840 37.037 0.00 0.00 0.00 2.69
2491 2608 5.296151 TGATGATAACCAAGAGCTTAGGG 57.704 43.478 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 3.781770 GAGACTCCGCCGCCATGAG 62.782 68.421 0.00 0.00 0.00 2.90
6 7 3.838271 GAGACTCCGCCGCCATGA 61.838 66.667 0.00 0.00 0.00 3.07
24 25 4.965119 ATCATAAACAAGCTTTCGGGAC 57.035 40.909 0.00 0.00 0.00 4.46
25 26 5.975693 AAATCATAAACAAGCTTTCGGGA 57.024 34.783 0.00 0.00 0.00 5.14
48 49 8.843308 ATATGGGATCTTTCATTGAGGAAAAA 57.157 30.769 0.00 0.00 36.42 1.94
49 50 9.578576 CTATATGGGATCTTTCATTGAGGAAAA 57.421 33.333 0.00 0.00 36.42 2.29
50 51 7.667219 GCTATATGGGATCTTTCATTGAGGAAA 59.333 37.037 0.00 0.00 35.59 3.13
51 52 7.170965 GCTATATGGGATCTTTCATTGAGGAA 58.829 38.462 0.00 0.00 0.00 3.36
52 53 6.273026 TGCTATATGGGATCTTTCATTGAGGA 59.727 38.462 0.00 0.00 0.00 3.71
53 54 6.479006 TGCTATATGGGATCTTTCATTGAGG 58.521 40.000 0.00 0.00 0.00 3.86
54 55 7.392418 TCTGCTATATGGGATCTTTCATTGAG 58.608 38.462 0.00 0.00 0.00 3.02
55 56 7.320384 TCTGCTATATGGGATCTTTCATTGA 57.680 36.000 0.00 0.00 0.00 2.57
56 57 7.881751 TCTTCTGCTATATGGGATCTTTCATTG 59.118 37.037 0.00 0.00 0.00 2.82
57 58 7.982252 TCTTCTGCTATATGGGATCTTTCATT 58.018 34.615 0.00 0.00 0.00 2.57
58 59 7.565190 TCTTCTGCTATATGGGATCTTTCAT 57.435 36.000 0.00 0.00 0.00 2.57
59 60 7.392418 CATCTTCTGCTATATGGGATCTTTCA 58.608 38.462 0.00 0.00 0.00 2.69
60 61 6.822676 CCATCTTCTGCTATATGGGATCTTTC 59.177 42.308 0.00 0.00 36.12 2.62
61 62 6.719301 CCATCTTCTGCTATATGGGATCTTT 58.281 40.000 0.00 0.00 36.12 2.52
62 63 6.310764 CCATCTTCTGCTATATGGGATCTT 57.689 41.667 0.00 0.00 36.12 2.40
63 64 5.954153 CCATCTTCTGCTATATGGGATCT 57.046 43.478 0.00 0.00 36.12 2.75
68 69 3.708403 TGCCCATCTTCTGCTATATGG 57.292 47.619 0.00 0.00 38.90 2.74
69 70 3.869832 CGATGCCCATCTTCTGCTATATG 59.130 47.826 6.69 0.00 35.72 1.78
70 71 3.118482 CCGATGCCCATCTTCTGCTATAT 60.118 47.826 6.69 0.00 35.72 0.86
71 72 2.234661 CCGATGCCCATCTTCTGCTATA 59.765 50.000 6.69 0.00 35.72 1.31
72 73 1.002888 CCGATGCCCATCTTCTGCTAT 59.997 52.381 6.69 0.00 35.72 2.97
73 74 0.394192 CCGATGCCCATCTTCTGCTA 59.606 55.000 6.69 0.00 35.72 3.49
74 75 1.147824 CCGATGCCCATCTTCTGCT 59.852 57.895 6.69 0.00 35.72 4.24
75 76 0.883814 CTCCGATGCCCATCTTCTGC 60.884 60.000 6.69 0.00 35.72 4.26
76 77 0.250209 CCTCCGATGCCCATCTTCTG 60.250 60.000 6.69 0.00 35.72 3.02
77 78 1.414061 CCCTCCGATGCCCATCTTCT 61.414 60.000 6.69 0.00 35.72 2.85
78 79 1.072159 CCCTCCGATGCCCATCTTC 59.928 63.158 6.69 0.00 35.72 2.87
79 80 3.125376 GCCCTCCGATGCCCATCTT 62.125 63.158 6.69 0.00 35.72 2.40
80 81 3.564218 GCCCTCCGATGCCCATCT 61.564 66.667 6.69 0.00 35.72 2.90
81 82 4.650377 GGCCCTCCGATGCCCATC 62.650 72.222 0.00 0.00 41.97 3.51
86 87 4.864334 CTGGTGGCCCTCCGATGC 62.864 72.222 0.00 0.00 34.14 3.91
87 88 4.181010 CCTGGTGGCCCTCCGATG 62.181 72.222 0.00 0.00 34.14 3.84
98 99 3.706373 CTCGTGGGTCCCCTGGTG 61.706 72.222 5.13 0.00 36.94 4.17
129 130 3.470888 CACGCCCTACCCTCCTGG 61.471 72.222 0.00 0.00 41.37 4.45
130 131 4.162690 GCACGCCCTACCCTCCTG 62.163 72.222 0.00 0.00 0.00 3.86
143 144 4.704833 CACTCAGGTGGGGGCACG 62.705 72.222 0.00 0.00 39.59 5.34
161 162 3.017442 GCAAGAAGTATCAAAGGGGGAC 58.983 50.000 0.00 0.00 0.00 4.46
162 163 2.355716 CGCAAGAAGTATCAAAGGGGGA 60.356 50.000 0.00 0.00 43.02 4.81
163 164 2.017049 CGCAAGAAGTATCAAAGGGGG 58.983 52.381 0.00 0.00 43.02 5.40
164 165 1.401905 GCGCAAGAAGTATCAAAGGGG 59.598 52.381 0.30 0.00 43.02 4.79
165 166 2.352960 GAGCGCAAGAAGTATCAAAGGG 59.647 50.000 11.47 0.00 43.02 3.95
166 167 3.002791 TGAGCGCAAGAAGTATCAAAGG 58.997 45.455 11.47 0.00 43.02 3.11
167 168 3.681897 ACTGAGCGCAAGAAGTATCAAAG 59.318 43.478 11.47 0.00 43.02 2.77
168 169 3.664107 ACTGAGCGCAAGAAGTATCAAA 58.336 40.909 11.47 0.00 43.02 2.69
169 170 3.319137 ACTGAGCGCAAGAAGTATCAA 57.681 42.857 11.47 0.00 43.02 2.57
170 171 4.655762 ATACTGAGCGCAAGAAGTATCA 57.344 40.909 11.47 0.00 36.11 2.15
171 172 5.975410 AAATACTGAGCGCAAGAAGTATC 57.025 39.130 11.47 0.00 38.34 2.24
172 173 6.743575 AAAAATACTGAGCGCAAGAAGTAT 57.256 33.333 11.47 13.60 39.86 2.12
214 215 3.113260 AGTCCTGAAACTTCACGGAAG 57.887 47.619 10.85 10.85 44.37 3.46
215 216 3.553828 AAGTCCTGAAACTTCACGGAA 57.446 42.857 10.37 0.00 34.37 4.30
216 217 3.553828 AAAGTCCTGAAACTTCACGGA 57.446 42.857 6.56 6.56 38.52 4.69
217 218 3.243068 CCAAAAGTCCTGAAACTTCACGG 60.243 47.826 0.00 0.00 38.52 4.94
218 219 3.625764 TCCAAAAGTCCTGAAACTTCACG 59.374 43.478 0.00 0.00 38.52 4.35
219 220 4.498177 GCTCCAAAAGTCCTGAAACTTCAC 60.498 45.833 0.00 0.00 38.52 3.18
220 221 3.632145 GCTCCAAAAGTCCTGAAACTTCA 59.368 43.478 0.00 0.00 38.52 3.02
221 222 3.885901 AGCTCCAAAAGTCCTGAAACTTC 59.114 43.478 0.00 0.00 38.52 3.01
222 223 3.633986 CAGCTCCAAAAGTCCTGAAACTT 59.366 43.478 0.00 0.00 41.20 2.66
223 224 3.217626 CAGCTCCAAAAGTCCTGAAACT 58.782 45.455 0.00 0.00 0.00 2.66
224 225 2.952310 ACAGCTCCAAAAGTCCTGAAAC 59.048 45.455 0.00 0.00 0.00 2.78
225 226 2.951642 CACAGCTCCAAAAGTCCTGAAA 59.048 45.455 0.00 0.00 0.00 2.69
226 227 2.575532 CACAGCTCCAAAAGTCCTGAA 58.424 47.619 0.00 0.00 0.00 3.02
227 228 1.815408 GCACAGCTCCAAAAGTCCTGA 60.815 52.381 0.00 0.00 0.00 3.86
228 229 0.595095 GCACAGCTCCAAAAGTCCTG 59.405 55.000 0.00 0.00 0.00 3.86
229 230 0.183492 TGCACAGCTCCAAAAGTCCT 59.817 50.000 0.00 0.00 0.00 3.85
230 231 0.595095 CTGCACAGCTCCAAAAGTCC 59.405 55.000 0.00 0.00 0.00 3.85
231 232 1.597742 TCTGCACAGCTCCAAAAGTC 58.402 50.000 0.00 0.00 0.00 3.01
232 233 2.057137 TTCTGCACAGCTCCAAAAGT 57.943 45.000 0.00 0.00 0.00 2.66
233 234 3.128242 CCTATTCTGCACAGCTCCAAAAG 59.872 47.826 0.00 0.00 0.00 2.27
234 235 3.084039 CCTATTCTGCACAGCTCCAAAA 58.916 45.455 0.00 0.00 0.00 2.44
235 236 2.040278 ACCTATTCTGCACAGCTCCAAA 59.960 45.455 0.00 0.00 0.00 3.28
236 237 1.630369 ACCTATTCTGCACAGCTCCAA 59.370 47.619 0.00 0.00 0.00 3.53
237 238 1.208052 GACCTATTCTGCACAGCTCCA 59.792 52.381 0.00 0.00 0.00 3.86
238 239 1.474143 GGACCTATTCTGCACAGCTCC 60.474 57.143 0.00 0.00 0.00 4.70
239 240 1.474143 GGGACCTATTCTGCACAGCTC 60.474 57.143 0.00 0.00 0.00 4.09
240 241 0.543749 GGGACCTATTCTGCACAGCT 59.456 55.000 0.00 0.00 0.00 4.24
241 242 0.543749 AGGGACCTATTCTGCACAGC 59.456 55.000 0.00 0.00 0.00 4.40
242 243 4.696479 ATTAGGGACCTATTCTGCACAG 57.304 45.455 0.00 0.00 0.00 3.66
243 244 6.763715 AATATTAGGGACCTATTCTGCACA 57.236 37.500 0.00 0.00 0.00 4.57
244 245 6.072452 GCAAATATTAGGGACCTATTCTGCAC 60.072 42.308 0.00 0.00 0.00 4.57
245 246 6.003950 GCAAATATTAGGGACCTATTCTGCA 58.996 40.000 0.00 0.00 0.00 4.41
246 247 6.241645 AGCAAATATTAGGGACCTATTCTGC 58.758 40.000 0.00 6.42 0.00 4.26
247 248 6.881602 GGAGCAAATATTAGGGACCTATTCTG 59.118 42.308 0.00 0.00 0.00 3.02
248 249 6.795000 AGGAGCAAATATTAGGGACCTATTCT 59.205 38.462 0.00 0.00 0.00 2.40
249 250 7.021998 AGGAGCAAATATTAGGGACCTATTC 57.978 40.000 0.00 0.00 0.00 1.75
250 251 7.408013 AAGGAGCAAATATTAGGGACCTATT 57.592 36.000 0.00 0.00 0.00 1.73
251 252 7.408013 AAAGGAGCAAATATTAGGGACCTAT 57.592 36.000 0.00 0.00 0.00 2.57
252 253 6.841781 AAAGGAGCAAATATTAGGGACCTA 57.158 37.500 0.00 0.00 0.00 3.08
253 254 5.734031 AAAGGAGCAAATATTAGGGACCT 57.266 39.130 0.00 0.00 0.00 3.85
254 255 5.891551 TGAAAAGGAGCAAATATTAGGGACC 59.108 40.000 0.00 0.00 0.00 4.46
255 256 6.460261 GCTGAAAAGGAGCAAATATTAGGGAC 60.460 42.308 0.00 0.00 36.40 4.46
256 257 5.594317 GCTGAAAAGGAGCAAATATTAGGGA 59.406 40.000 0.00 0.00 36.40 4.20
257 258 5.221322 GGCTGAAAAGGAGCAAATATTAGGG 60.221 44.000 0.00 0.00 38.27 3.53
258 259 5.221322 GGGCTGAAAAGGAGCAAATATTAGG 60.221 44.000 0.00 0.00 38.27 2.69
259 260 5.360714 TGGGCTGAAAAGGAGCAAATATTAG 59.639 40.000 0.00 0.00 38.27 1.73
260 261 5.268387 TGGGCTGAAAAGGAGCAAATATTA 58.732 37.500 0.00 0.00 38.27 0.98
261 262 4.095946 TGGGCTGAAAAGGAGCAAATATT 58.904 39.130 0.00 0.00 38.27 1.28
262 263 3.703052 CTGGGCTGAAAAGGAGCAAATAT 59.297 43.478 0.00 0.00 38.27 1.28
263 264 3.091545 CTGGGCTGAAAAGGAGCAAATA 58.908 45.455 0.00 0.00 38.27 1.40
264 265 1.897802 CTGGGCTGAAAAGGAGCAAAT 59.102 47.619 0.00 0.00 38.27 2.32
265 266 1.133513 TCTGGGCTGAAAAGGAGCAAA 60.134 47.619 0.00 0.00 38.27 3.68
266 267 0.478072 TCTGGGCTGAAAAGGAGCAA 59.522 50.000 0.00 0.00 38.27 3.91
267 268 0.478072 TTCTGGGCTGAAAAGGAGCA 59.522 50.000 0.00 0.00 38.27 4.26
268 269 1.747924 GATTCTGGGCTGAAAAGGAGC 59.252 52.381 0.00 0.00 35.57 4.70
269 270 2.025510 AGGATTCTGGGCTGAAAAGGAG 60.026 50.000 0.00 0.00 0.00 3.69
270 271 1.995542 AGGATTCTGGGCTGAAAAGGA 59.004 47.619 0.00 0.00 0.00 3.36
271 272 2.521547 AGGATTCTGGGCTGAAAAGG 57.478 50.000 0.00 0.00 0.00 3.11
272 273 2.948315 GCTAGGATTCTGGGCTGAAAAG 59.052 50.000 0.00 0.00 0.00 2.27
273 274 2.578021 AGCTAGGATTCTGGGCTGAAAA 59.422 45.455 2.98 0.00 34.15 2.29
274 275 2.200081 AGCTAGGATTCTGGGCTGAAA 58.800 47.619 2.98 0.00 34.15 2.69
275 276 1.885049 AGCTAGGATTCTGGGCTGAA 58.115 50.000 2.98 0.00 34.15 3.02
276 277 2.320781 GTAGCTAGGATTCTGGGCTGA 58.679 52.381 11.97 0.00 35.89 4.26
277 278 1.346068 GGTAGCTAGGATTCTGGGCTG 59.654 57.143 11.97 0.00 35.89 4.85
278 279 1.723288 GGTAGCTAGGATTCTGGGCT 58.277 55.000 8.14 8.14 37.27 5.19
279 280 0.318762 CGGTAGCTAGGATTCTGGGC 59.681 60.000 0.00 0.00 0.00 5.36
280 281 0.969894 CCGGTAGCTAGGATTCTGGG 59.030 60.000 0.00 0.00 0.00 4.45
281 282 0.318762 GCCGGTAGCTAGGATTCTGG 59.681 60.000 1.90 2.81 38.99 3.86
282 283 1.040646 TGCCGGTAGCTAGGATTCTG 58.959 55.000 1.90 0.00 44.23 3.02
283 284 2.016905 ATGCCGGTAGCTAGGATTCT 57.983 50.000 1.90 0.00 44.23 2.40
284 285 2.300437 AGAATGCCGGTAGCTAGGATTC 59.700 50.000 14.22 14.22 44.23 2.52
285 286 2.300437 GAGAATGCCGGTAGCTAGGATT 59.700 50.000 1.90 0.93 44.23 3.01
286 287 1.896465 GAGAATGCCGGTAGCTAGGAT 59.104 52.381 1.90 0.00 44.23 3.24
287 288 1.329256 GAGAATGCCGGTAGCTAGGA 58.671 55.000 1.90 0.00 44.23 2.94
288 289 0.318762 GGAGAATGCCGGTAGCTAGG 59.681 60.000 1.90 0.00 44.23 3.02
289 290 0.318762 GGGAGAATGCCGGTAGCTAG 59.681 60.000 1.90 0.00 44.23 3.42
290 291 2.437625 GGGAGAATGCCGGTAGCTA 58.562 57.895 1.90 0.00 44.23 3.32
291 292 3.231298 GGGAGAATGCCGGTAGCT 58.769 61.111 1.90 0.00 44.23 3.32
299 300 5.585047 ACGTTTACATAAAGAGGGAGAATGC 59.415 40.000 0.00 0.00 0.00 3.56
300 301 7.119262 ACAACGTTTACATAAAGAGGGAGAATG 59.881 37.037 0.00 0.00 0.00 2.67
301 302 7.166167 ACAACGTTTACATAAAGAGGGAGAAT 58.834 34.615 0.00 0.00 0.00 2.40
302 303 6.527423 ACAACGTTTACATAAAGAGGGAGAA 58.473 36.000 0.00 0.00 0.00 2.87
303 304 6.105397 ACAACGTTTACATAAAGAGGGAGA 57.895 37.500 0.00 0.00 0.00 3.71
304 305 7.894376 TTACAACGTTTACATAAAGAGGGAG 57.106 36.000 0.00 0.00 0.00 4.30
305 306 8.674263 TTTTACAACGTTTACATAAAGAGGGA 57.326 30.769 0.00 0.00 0.00 4.20
319 320 8.880750 GCCTATTCTCTCTTATTTTACAACGTT 58.119 33.333 0.00 0.00 0.00 3.99
320 321 8.038944 TGCCTATTCTCTCTTATTTTACAACGT 58.961 33.333 0.00 0.00 0.00 3.99
321 322 8.420374 TGCCTATTCTCTCTTATTTTACAACG 57.580 34.615 0.00 0.00 0.00 4.10
332 333 8.928448 TCACAATACTTATGCCTATTCTCTCTT 58.072 33.333 0.00 0.00 0.00 2.85
333 334 8.364142 GTCACAATACTTATGCCTATTCTCTCT 58.636 37.037 0.00 0.00 0.00 3.10
334 335 8.144478 TGTCACAATACTTATGCCTATTCTCTC 58.856 37.037 0.00 0.00 0.00 3.20
335 336 8.023021 TGTCACAATACTTATGCCTATTCTCT 57.977 34.615 0.00 0.00 0.00 3.10
336 337 8.839310 ATGTCACAATACTTATGCCTATTCTC 57.161 34.615 0.00 0.00 0.00 2.87
341 342 9.271828 CACATTATGTCACAATACTTATGCCTA 57.728 33.333 0.00 0.00 0.00 3.93
342 343 7.775093 ACACATTATGTCACAATACTTATGCCT 59.225 33.333 0.00 0.00 36.54 4.75
343 344 7.930217 ACACATTATGTCACAATACTTATGCC 58.070 34.615 0.00 0.00 36.54 4.40
353 354 8.516234 GGGTTGTTATTACACATTATGTCACAA 58.484 33.333 0.00 0.00 42.09 3.33
354 355 7.665974 TGGGTTGTTATTACACATTATGTCACA 59.334 33.333 0.00 0.00 42.09 3.58
355 356 8.046294 TGGGTTGTTATTACACATTATGTCAC 57.954 34.615 0.00 0.00 42.09 3.67
356 357 8.815565 ATGGGTTGTTATTACACATTATGTCA 57.184 30.769 0.00 0.00 42.09 3.58
361 362 9.190317 TGCATTATGGGTTGTTATTACACATTA 57.810 29.630 0.00 0.00 40.07 1.90
362 363 8.072321 TGCATTATGGGTTGTTATTACACATT 57.928 30.769 0.00 0.00 40.07 2.71
363 364 7.652524 TGCATTATGGGTTGTTATTACACAT 57.347 32.000 0.00 0.00 42.11 3.21
364 365 7.468141 TTGCATTATGGGTTGTTATTACACA 57.532 32.000 0.00 0.00 32.98 3.72
372 373 8.855110 TCGATATTTATTGCATTATGGGTTGTT 58.145 29.630 0.00 0.00 0.00 2.83
373 374 8.402798 TCGATATTTATTGCATTATGGGTTGT 57.597 30.769 0.00 0.00 0.00 3.32
394 395 9.135843 CATTTTGCATCATGCTTTTATATCGAT 57.864 29.630 11.84 2.16 45.31 3.59
395 396 7.595875 CCATTTTGCATCATGCTTTTATATCGA 59.404 33.333 11.84 0.00 45.31 3.59
396 397 7.595875 TCCATTTTGCATCATGCTTTTATATCG 59.404 33.333 11.84 0.00 45.31 2.92
397 398 8.706035 GTCCATTTTGCATCATGCTTTTATATC 58.294 33.333 11.84 0.00 45.31 1.63
398 399 7.383029 CGTCCATTTTGCATCATGCTTTTATAT 59.617 33.333 11.84 0.00 45.31 0.86
399 400 6.696583 CGTCCATTTTGCATCATGCTTTTATA 59.303 34.615 11.84 0.00 45.31 0.98
400 401 5.521010 CGTCCATTTTGCATCATGCTTTTAT 59.479 36.000 11.84 0.00 45.31 1.40
401 402 4.863689 CGTCCATTTTGCATCATGCTTTTA 59.136 37.500 11.84 0.00 45.31 1.52
402 403 3.680937 CGTCCATTTTGCATCATGCTTTT 59.319 39.130 11.84 0.00 45.31 2.27
403 404 3.255725 CGTCCATTTTGCATCATGCTTT 58.744 40.909 11.84 0.00 45.31 3.51
404 405 2.231964 ACGTCCATTTTGCATCATGCTT 59.768 40.909 11.84 0.00 45.31 3.91
405 406 1.820519 ACGTCCATTTTGCATCATGCT 59.179 42.857 11.84 0.00 45.31 3.79
406 407 2.282701 ACGTCCATTTTGCATCATGC 57.717 45.000 1.35 1.35 45.29 4.06
407 408 5.172460 TGATACGTCCATTTTGCATCATG 57.828 39.130 0.00 0.00 0.00 3.07
408 409 4.261322 GCTGATACGTCCATTTTGCATCAT 60.261 41.667 0.00 0.00 0.00 2.45
409 410 3.065233 GCTGATACGTCCATTTTGCATCA 59.935 43.478 0.00 0.00 0.00 3.07
410 411 3.065233 TGCTGATACGTCCATTTTGCATC 59.935 43.478 0.00 0.00 0.00 3.91
411 412 3.016031 TGCTGATACGTCCATTTTGCAT 58.984 40.909 0.00 0.00 0.00 3.96
412 413 2.431454 TGCTGATACGTCCATTTTGCA 58.569 42.857 0.00 0.00 0.00 4.08
413 414 3.119849 AGTTGCTGATACGTCCATTTTGC 60.120 43.478 0.00 0.00 0.00 3.68
414 415 4.406069 CAGTTGCTGATACGTCCATTTTG 58.594 43.478 0.00 0.00 32.44 2.44
415 416 3.440173 CCAGTTGCTGATACGTCCATTTT 59.560 43.478 0.00 0.00 32.44 1.82
416 417 3.009723 CCAGTTGCTGATACGTCCATTT 58.990 45.455 0.00 0.00 32.44 2.32
417 418 2.632377 CCAGTTGCTGATACGTCCATT 58.368 47.619 0.00 0.00 32.44 3.16
418 419 1.134401 CCCAGTTGCTGATACGTCCAT 60.134 52.381 0.00 0.00 32.44 3.41
419 420 0.249120 CCCAGTTGCTGATACGTCCA 59.751 55.000 0.00 0.00 32.44 4.02
420 421 0.249398 ACCCAGTTGCTGATACGTCC 59.751 55.000 0.00 0.00 32.44 4.79
421 422 2.000447 GAACCCAGTTGCTGATACGTC 59.000 52.381 0.00 0.00 32.44 4.34
422 423 1.338769 GGAACCCAGTTGCTGATACGT 60.339 52.381 0.00 0.00 32.44 3.57
423 424 1.369625 GGAACCCAGTTGCTGATACG 58.630 55.000 0.00 0.00 32.44 3.06
449 450 1.580845 CCTTGTTGCCTTGCTCTCGG 61.581 60.000 0.00 0.00 0.00 4.63
453 454 0.040067 CGTTCCTTGTTGCCTTGCTC 60.040 55.000 0.00 0.00 0.00 4.26
454 455 2.032981 CGTTCCTTGTTGCCTTGCT 58.967 52.632 0.00 0.00 0.00 3.91
550 554 1.137479 CGCTTCGAAGGTATAACCCCA 59.863 52.381 25.77 0.00 39.75 4.96
587 592 2.170607 CAACTACATCCCATCGAACCCT 59.829 50.000 0.00 0.00 0.00 4.34
625 631 5.047590 ACAATCATCGTGTACAACTACTCCA 60.048 40.000 0.00 0.00 0.00 3.86
634 640 5.047590 ACTTCCACTACAATCATCGTGTACA 60.048 40.000 0.00 0.00 0.00 2.90
669 676 2.561419 TCGTCAAGTTCCTCTCCGAAAT 59.439 45.455 0.00 0.00 0.00 2.17
688 700 2.928116 GACCCAAAGTTACTCGGATTCG 59.072 50.000 2.73 0.00 37.82 3.34
710 722 2.229792 TCTCCGTGTACAACTACCGTT 58.770 47.619 0.00 0.00 0.00 4.44
728 740 4.205587 CGACCTATGTACCACTACCTTCT 58.794 47.826 0.00 0.00 0.00 2.85
731 743 3.659183 ACGACCTATGTACCACTACCT 57.341 47.619 0.00 0.00 0.00 3.08
744 756 1.269448 GACCCAAACGTGTACGACCTA 59.731 52.381 11.79 0.00 43.02 3.08
748 760 2.203401 CAAAGACCCAAACGTGTACGA 58.797 47.619 11.79 0.00 43.02 3.43
759 809 1.985159 AGCACATCTACCAAAGACCCA 59.015 47.619 0.00 0.00 36.93 4.51
814 864 2.564062 AGTACCCTTCGGATTCGTCAAA 59.436 45.455 0.00 0.00 37.69 2.69
839 889 4.885413 CAAACAGGAGCAATTTTGGATCA 58.115 39.130 0.00 0.00 0.00 2.92
907 957 3.114616 CTCACACCTCCTTGCGCG 61.115 66.667 0.00 0.00 0.00 6.86
927 977 5.587388 ATCACTGGATGCAAAACCATTAG 57.413 39.130 10.27 3.58 35.54 1.73
929 979 5.018809 ACTATCACTGGATGCAAAACCATT 58.981 37.500 10.27 3.70 35.54 3.16
946 996 4.080582 CCTTGTCCACCCATGTTACTATCA 60.081 45.833 0.00 0.00 0.00 2.15
957 1007 1.846124 GAGACCCCTTGTCCACCCA 60.846 63.158 0.00 0.00 45.68 4.51
962 1012 1.265454 ACCATCGAGACCCCTTGTCC 61.265 60.000 0.00 0.00 45.68 4.02
1010 1060 0.248296 GCGTTTGCGACCTTTTGTCA 60.248 50.000 0.00 0.00 44.71 3.58
1037 1087 1.668101 GCTACAGTCTAGCCACGCCT 61.668 60.000 0.00 0.00 34.65 5.52
1053 1103 4.129737 GCCGTCCTGCTGTCGCTA 62.130 66.667 0.00 0.00 36.97 4.26
1058 1108 2.244117 ATCATTCGCCGTCCTGCTGT 62.244 55.000 0.00 0.00 0.00 4.40
1074 1124 1.448893 GACGCCGGCCACTTTATCA 60.449 57.895 23.46 0.00 0.00 2.15
1179 1229 4.554363 CCGACTCGATTCGCCGCT 62.554 66.667 18.65 0.00 37.70 5.52
1217 1267 2.037772 AGCAACAACTGTACCCTCTCTG 59.962 50.000 0.00 0.00 0.00 3.35
1218 1268 2.330216 AGCAACAACTGTACCCTCTCT 58.670 47.619 0.00 0.00 0.00 3.10
1227 1277 0.105964 TCGGCAGTAGCAACAACTGT 59.894 50.000 5.25 0.00 45.01 3.55
1239 1289 2.282251 TCCGTCAGAGTCGGCAGT 60.282 61.111 0.00 0.00 46.49 4.40
1240 1290 2.487428 CTCCGTCAGAGTCGGCAG 59.513 66.667 0.00 0.00 46.49 4.85
1251 1301 1.028905 CACCAGATCTCTCCTCCGTC 58.971 60.000 0.00 0.00 0.00 4.79
1253 1303 1.743321 GCCACCAGATCTCTCCTCCG 61.743 65.000 0.00 0.00 0.00 4.63
1259 1309 2.430610 GCTCCGCCACCAGATCTCT 61.431 63.158 0.00 0.00 0.00 3.10
1292 1342 3.584052 CTCCTCGTCTACCCGGCG 61.584 72.222 0.00 0.00 0.00 6.46
1297 1347 2.787567 GCCTGCCTCCTCGTCTACC 61.788 68.421 0.00 0.00 0.00 3.18
1312 1362 1.227946 GTCCCTCTACTCCTCGCCT 59.772 63.158 0.00 0.00 0.00 5.52
1365 1418 0.620410 CCATGACCCCACCTCCTACA 60.620 60.000 0.00 0.00 0.00 2.74
1367 1420 0.326238 GACCATGACCCCACCTCCTA 60.326 60.000 0.00 0.00 0.00 2.94
1430 1489 4.643387 ACTGCACCCAACGCCTCC 62.643 66.667 0.00 0.00 0.00 4.30
1466 1526 1.517832 CCGCTCCTTCCTGTCGATT 59.482 57.895 0.00 0.00 0.00 3.34
1472 1532 1.972660 CTAACCCCCGCTCCTTCCTG 61.973 65.000 0.00 0.00 0.00 3.86
1505 1565 2.851071 GCTCGATCCCCCGTCTCTG 61.851 68.421 0.00 0.00 0.00 3.35
1541 1601 0.914417 CCCCTTTGTCCCTCCTAGCA 60.914 60.000 0.00 0.00 0.00 3.49
1691 1754 8.775527 CCCTACTTTTCTTTTCTTCTGTCTAAC 58.224 37.037 0.00 0.00 0.00 2.34
1697 1760 7.175119 CCCTAACCCTACTTTTCTTTTCTTCTG 59.825 40.741 0.00 0.00 0.00 3.02
1711 1775 6.246163 CACAAATTCTTTCCCTAACCCTACT 58.754 40.000 0.00 0.00 0.00 2.57
1712 1776 5.105877 GCACAAATTCTTTCCCTAACCCTAC 60.106 44.000 0.00 0.00 0.00 3.18
1713 1777 5.014202 GCACAAATTCTTTCCCTAACCCTA 58.986 41.667 0.00 0.00 0.00 3.53
1734 1813 2.223688 CCGGGAAAATTATTCGCATGCA 60.224 45.455 19.57 0.00 0.00 3.96
1742 1821 9.816354 CATTTTTATGAGTCCGGGAAAATTATT 57.184 29.630 0.00 0.00 0.00 1.40
1894 1978 7.232188 TCTTTCCTATCTATCGAGGCTCTTTA 58.768 38.462 13.50 3.19 32.40 1.85
1912 1996 5.780958 AACCTTGCCTATAACTCTTTCCT 57.219 39.130 0.00 0.00 0.00 3.36
1920 2007 6.466885 TGACTCTCTAACCTTGCCTATAAC 57.533 41.667 0.00 0.00 0.00 1.89
2075 2173 7.255139 GGTCCATTTAAATCGAGGGAAATGTAG 60.255 40.741 19.26 10.61 37.51 2.74
2198 2306 4.371855 TTCGTTGTTGCCATGTGTTTTA 57.628 36.364 0.00 0.00 0.00 1.52
2221 2330 1.948144 GCTCCAGAAGCCTTCCAGTTC 60.948 57.143 0.00 0.00 45.92 3.01
2253 2362 3.228453 AGTGGAGGAGAGTTGTAACGAA 58.772 45.455 0.00 0.00 0.00 3.85
2328 2438 8.232913 AGAAGCAACTTTGTTTTACCTATTCA 57.767 30.769 0.00 0.00 31.57 2.57
2332 2447 6.539464 TCGAAGAAGCAACTTTGTTTTACCTA 59.461 34.615 9.06 0.00 31.57 3.08
2355 2470 4.285807 TCATGGTTTCACTTGTTTGTCG 57.714 40.909 0.00 0.00 0.00 4.35
2363 2478 4.792068 TCTCAAGGTTCATGGTTTCACTT 58.208 39.130 0.00 0.00 0.00 3.16
2397 2514 5.757886 TCCGTTGTATTCTTTTCTTGCAAG 58.242 37.500 20.81 20.81 0.00 4.01
2399 2516 5.049680 GTCTCCGTTGTATTCTTTTCTTGCA 60.050 40.000 0.00 0.00 0.00 4.08
2400 2517 5.049680 TGTCTCCGTTGTATTCTTTTCTTGC 60.050 40.000 0.00 0.00 0.00 4.01
2401 2518 6.539649 TGTCTCCGTTGTATTCTTTTCTTG 57.460 37.500 0.00 0.00 0.00 3.02
2423 2540 4.507388 ACGAACCATTTGCAATCTTGTTTG 59.493 37.500 0.00 8.39 0.00 2.93
2424 2541 4.692228 ACGAACCATTTGCAATCTTGTTT 58.308 34.783 0.00 0.00 0.00 2.83
2439 2556 1.124780 TCCTCTTGTCCAACGAACCA 58.875 50.000 0.00 0.00 0.00 3.67
2440 2557 1.871676 GTTCCTCTTGTCCAACGAACC 59.128 52.381 0.00 0.00 0.00 3.62
2441 2558 2.557317 TGTTCCTCTTGTCCAACGAAC 58.443 47.619 0.00 0.00 0.00 3.95
2443 2560 2.549992 CCATGTTCCTCTTGTCCAACGA 60.550 50.000 0.00 0.00 0.00 3.85
2448 2565 5.684704 TCATATTCCATGTTCCTCTTGTCC 58.315 41.667 0.00 0.00 0.00 4.02
2451 2568 7.997773 ATCATCATATTCCATGTTCCTCTTG 57.002 36.000 0.00 0.00 0.00 3.02
2462 2579 7.083062 AGCTCTTGGTTATCATCATATTCCA 57.917 36.000 0.00 0.00 0.00 3.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.