Multiple sequence alignment - TraesCS4A01G107100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G107100 chr4A 100.000 2263 0 0 1 2263 122737187 122734925 0.000000e+00 4180.0
1 TraesCS4A01G107100 chr4A 80.884 701 74 30 775 1437 122627722 122627044 4.340000e-137 497.0
2 TraesCS4A01G107100 chr4A 94.068 118 7 0 1 118 246723342 246723225 1.790000e-41 180.0
3 TraesCS4A01G107100 chr4A 93.478 46 2 1 1544 1589 691811016 691810972 1.450000e-07 67.6
4 TraesCS4A01G107100 chr4B 95.656 1082 34 10 425 1500 424861594 424862668 0.000000e+00 1725.0
5 TraesCS4A01G107100 chr4B 92.373 118 9 0 1 118 63009168 63009051 3.870000e-38 169.0
6 TraesCS4A01G107100 chr4B 91.525 118 10 0 1 118 122034032 122033915 1.800000e-36 163.0
7 TraesCS4A01G107100 chr4D 90.975 1097 56 17 418 1500 343060877 343061944 0.000000e+00 1437.0
8 TraesCS4A01G107100 chr4D 93.462 673 39 4 1591 2263 340402498 340401831 0.000000e+00 994.0
9 TraesCS4A01G107100 chr4D 84.772 591 63 12 760 1333 343088642 343089222 3.260000e-158 568.0
10 TraesCS4A01G107100 chr4D 91.525 118 10 0 1 118 30174739 30174622 1.800000e-36 163.0
11 TraesCS4A01G107100 chr4D 100.000 38 0 0 1552 1589 21890201 21890238 1.120000e-08 71.3
12 TraesCS4A01G107100 chr5D 93.314 673 41 3 1591 2263 47306562 47307230 0.000000e+00 990.0
13 TraesCS4A01G107100 chr2A 97.458 118 3 0 1 118 25109241 25109358 3.810000e-48 202.0
14 TraesCS4A01G107100 chr6D 95.652 115 5 0 1 115 163360734 163360848 3.840000e-43 185.0
15 TraesCS4A01G107100 chr6D 94.915 118 6 0 1 118 187393946 187393829 3.840000e-43 185.0
16 TraesCS4A01G107100 chr7D 94.783 115 6 0 1 115 166668665 166668779 1.790000e-41 180.0
17 TraesCS4A01G107100 chr7D 97.561 41 1 0 1549 1589 193186472 193186512 1.120000e-08 71.3
18 TraesCS4A01G107100 chr2D 94.068 118 7 0 1 118 413946567 413946684 1.790000e-41 180.0
19 TraesCS4A01G107100 chr2D 100.000 29 0 0 1884 1912 294513806 294513834 1.000000e-03 54.7
20 TraesCS4A01G107100 chr3A 75.936 374 66 14 1898 2261 749475818 749476177 1.070000e-38 171.0
21 TraesCS4A01G107100 chr7B 74.251 334 78 6 1676 2008 92565641 92565315 1.410000e-27 134.0
22 TraesCS4A01G107100 chr7B 86.207 58 8 0 1873 1930 4142653 4142710 1.880000e-06 63.9
23 TraesCS4A01G107100 chr2B 77.570 214 47 1 1796 2008 87800619 87800832 6.560000e-26 128.0
24 TraesCS4A01G107100 chr7A 77.273 154 33 2 1823 1975 728957880 728957728 3.100000e-14 89.8
25 TraesCS4A01G107100 chr3D 91.525 59 4 1 1716 1773 108815491 108815433 1.860000e-11 80.5
26 TraesCS4A01G107100 chr3B 97.727 44 0 1 1548 1591 618651503 618651545 8.670000e-10 75.0
27 TraesCS4A01G107100 chr5A 100.000 38 0 0 1554 1591 603797314 603797351 1.120000e-08 71.3
28 TraesCS4A01G107100 chr1D 97.500 40 0 1 1550 1589 467415511 467415473 1.450000e-07 67.6
29 TraesCS4A01G107100 chr1B 100.000 36 0 0 1554 1589 335766538 335766573 1.450000e-07 67.6
30 TraesCS4A01G107100 chr1B 100.000 36 0 0 1554 1589 645315108 645315143 1.450000e-07 67.6
31 TraesCS4A01G107100 chr1B 100.000 36 0 0 1554 1589 645321114 645321149 1.450000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G107100 chr4A 122734925 122737187 2262 True 4180 4180 100.000 1 2263 1 chr4A.!!$R2 2262
1 TraesCS4A01G107100 chr4A 122627044 122627722 678 True 497 497 80.884 775 1437 1 chr4A.!!$R1 662
2 TraesCS4A01G107100 chr4B 424861594 424862668 1074 False 1725 1725 95.656 425 1500 1 chr4B.!!$F1 1075
3 TraesCS4A01G107100 chr4D 343060877 343061944 1067 False 1437 1437 90.975 418 1500 1 chr4D.!!$F2 1082
4 TraesCS4A01G107100 chr4D 340401831 340402498 667 True 994 994 93.462 1591 2263 1 chr4D.!!$R2 672
5 TraesCS4A01G107100 chr4D 343088642 343089222 580 False 568 568 84.772 760 1333 1 chr4D.!!$F3 573
6 TraesCS4A01G107100 chr5D 47306562 47307230 668 False 990 990 93.314 1591 2263 1 chr5D.!!$F1 672

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.030908 GCCCTACTCCGTCGATGAAG 59.969 60.0 6.11 0.0 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1570 1622 0.099968 TTATACGAGCGCTTGCGTCT 59.9 50.0 24.96 18.45 45.69 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.651387 TCTCCTGAAGACATGTGAAGTAG 57.349 43.478 1.15 0.00 0.00 2.57
23 24 4.464244 TCTCCTGAAGACATGTGAAGTAGG 59.536 45.833 1.15 4.76 0.00 3.18
24 25 4.416516 TCCTGAAGACATGTGAAGTAGGA 58.583 43.478 1.15 7.20 0.00 2.94
25 26 4.464244 TCCTGAAGACATGTGAAGTAGGAG 59.536 45.833 1.15 0.00 0.00 3.69
26 27 4.382470 CCTGAAGACATGTGAAGTAGGAGG 60.382 50.000 1.15 0.00 0.00 4.30
27 28 4.416516 TGAAGACATGTGAAGTAGGAGGA 58.583 43.478 1.15 0.00 0.00 3.71
28 29 4.838423 TGAAGACATGTGAAGTAGGAGGAA 59.162 41.667 1.15 0.00 0.00 3.36
29 30 5.047021 TGAAGACATGTGAAGTAGGAGGAAG 60.047 44.000 1.15 0.00 0.00 3.46
30 31 3.772025 AGACATGTGAAGTAGGAGGAAGG 59.228 47.826 1.15 0.00 0.00 3.46
31 32 2.237392 ACATGTGAAGTAGGAGGAAGGC 59.763 50.000 0.00 0.00 0.00 4.35
32 33 2.327325 TGTGAAGTAGGAGGAAGGCT 57.673 50.000 0.00 0.00 0.00 4.58
33 34 2.180276 TGTGAAGTAGGAGGAAGGCTC 58.820 52.381 0.00 0.00 0.00 4.70
34 35 2.180276 GTGAAGTAGGAGGAAGGCTCA 58.820 52.381 0.00 0.00 0.00 4.26
35 36 2.769095 GTGAAGTAGGAGGAAGGCTCAT 59.231 50.000 0.00 0.00 0.00 2.90
36 37 3.034635 TGAAGTAGGAGGAAGGCTCATC 58.965 50.000 0.00 0.00 0.00 2.92
37 38 3.304829 GAAGTAGGAGGAAGGCTCATCT 58.695 50.000 0.00 0.00 32.82 2.90
38 39 3.413105 AGTAGGAGGAAGGCTCATCTT 57.587 47.619 0.00 0.00 32.82 2.40
39 40 3.037549 AGTAGGAGGAAGGCTCATCTTG 58.962 50.000 0.00 0.00 32.82 3.02
40 41 1.211456 AGGAGGAAGGCTCATCTTGG 58.789 55.000 0.00 0.00 32.82 3.61
41 42 1.207791 GGAGGAAGGCTCATCTTGGA 58.792 55.000 0.00 0.00 32.82 3.53
42 43 1.140652 GGAGGAAGGCTCATCTTGGAG 59.859 57.143 0.00 0.00 37.97 3.86
43 44 2.114616 GAGGAAGGCTCATCTTGGAGA 58.885 52.381 0.00 0.00 37.05 3.71
44 45 1.836802 AGGAAGGCTCATCTTGGAGAC 59.163 52.381 0.00 0.00 43.60 3.36
45 46 1.134250 GGAAGGCTCATCTTGGAGACC 60.134 57.143 0.00 0.00 44.39 3.85
46 47 1.556911 GAAGGCTCATCTTGGAGACCA 59.443 52.381 0.00 0.00 44.39 4.02
47 48 1.890552 AGGCTCATCTTGGAGACCAT 58.109 50.000 0.00 0.00 44.39 3.55
48 49 1.489649 AGGCTCATCTTGGAGACCATG 59.510 52.381 0.00 0.00 44.39 3.66
49 50 1.487976 GGCTCATCTTGGAGACCATGA 59.512 52.381 8.41 8.41 40.96 3.07
50 51 2.559440 GCTCATCTTGGAGACCATGAC 58.441 52.381 8.20 0.00 39.83 3.06
51 52 2.819115 CTCATCTTGGAGACCATGACG 58.181 52.381 8.20 1.85 39.83 4.35
52 53 1.134699 TCATCTTGGAGACCATGACGC 60.135 52.381 8.20 0.00 39.83 5.19
53 54 0.179100 ATCTTGGAGACCATGACGCG 60.179 55.000 3.53 3.53 39.83 6.01
54 55 2.434185 TTGGAGACCATGACGCGC 60.434 61.111 5.73 0.00 31.53 6.86
55 56 4.794439 TGGAGACCATGACGCGCG 62.794 66.667 30.96 30.96 0.00 6.86
67 68 2.949678 CGCGCGCGTCTATCACTT 60.950 61.111 42.49 0.00 34.35 3.16
68 69 2.615618 GCGCGCGTCTATCACTTG 59.384 61.111 32.35 0.00 0.00 3.16
69 70 2.158959 GCGCGCGTCTATCACTTGT 61.159 57.895 32.35 0.00 0.00 3.16
70 71 1.910880 CGCGCGTCTATCACTTGTC 59.089 57.895 24.19 0.00 0.00 3.18
71 72 1.472276 CGCGCGTCTATCACTTGTCC 61.472 60.000 24.19 0.00 0.00 4.02
72 73 0.457853 GCGCGTCTATCACTTGTCCA 60.458 55.000 8.43 0.00 0.00 4.02
73 74 1.269166 CGCGTCTATCACTTGTCCAC 58.731 55.000 0.00 0.00 0.00 4.02
74 75 1.402325 CGCGTCTATCACTTGTCCACA 60.402 52.381 0.00 0.00 0.00 4.17
75 76 2.683968 GCGTCTATCACTTGTCCACAA 58.316 47.619 0.00 0.00 0.00 3.33
76 77 2.412089 GCGTCTATCACTTGTCCACAAC 59.588 50.000 0.00 0.00 0.00 3.32
77 78 2.993899 CGTCTATCACTTGTCCACAACC 59.006 50.000 0.00 0.00 0.00 3.77
78 79 3.306088 CGTCTATCACTTGTCCACAACCT 60.306 47.826 0.00 0.00 0.00 3.50
79 80 4.082408 CGTCTATCACTTGTCCACAACCTA 60.082 45.833 0.00 0.00 0.00 3.08
80 81 5.394224 CGTCTATCACTTGTCCACAACCTAT 60.394 44.000 0.00 0.00 0.00 2.57
81 82 6.183360 CGTCTATCACTTGTCCACAACCTATA 60.183 42.308 0.00 0.00 0.00 1.31
82 83 6.979238 GTCTATCACTTGTCCACAACCTATAC 59.021 42.308 0.00 0.00 0.00 1.47
83 84 6.895756 TCTATCACTTGTCCACAACCTATACT 59.104 38.462 0.00 0.00 0.00 2.12
84 85 5.147330 TCACTTGTCCACAACCTATACTG 57.853 43.478 0.00 0.00 0.00 2.74
85 86 3.684788 CACTTGTCCACAACCTATACTGC 59.315 47.826 0.00 0.00 0.00 4.40
86 87 3.326588 ACTTGTCCACAACCTATACTGCA 59.673 43.478 0.00 0.00 0.00 4.41
87 88 3.328382 TGTCCACAACCTATACTGCAC 57.672 47.619 0.00 0.00 0.00 4.57
88 89 2.027561 TGTCCACAACCTATACTGCACC 60.028 50.000 0.00 0.00 0.00 5.01
89 90 2.027561 GTCCACAACCTATACTGCACCA 60.028 50.000 0.00 0.00 0.00 4.17
90 91 2.843730 TCCACAACCTATACTGCACCAT 59.156 45.455 0.00 0.00 0.00 3.55
91 92 2.945008 CCACAACCTATACTGCACCATG 59.055 50.000 0.00 0.00 0.00 3.66
92 93 3.370421 CCACAACCTATACTGCACCATGA 60.370 47.826 0.00 0.00 0.00 3.07
93 94 3.873361 CACAACCTATACTGCACCATGAG 59.127 47.826 0.00 0.00 0.00 2.90
94 95 2.874701 CAACCTATACTGCACCATGAGC 59.125 50.000 0.00 0.00 0.00 4.26
95 96 1.417890 ACCTATACTGCACCATGAGCC 59.582 52.381 0.00 0.00 0.00 4.70
96 97 1.417517 CCTATACTGCACCATGAGCCA 59.582 52.381 0.00 0.00 0.00 4.75
97 98 2.549563 CCTATACTGCACCATGAGCCAG 60.550 54.545 0.00 0.00 0.00 4.85
98 99 0.182061 ATACTGCACCATGAGCCAGG 59.818 55.000 0.00 0.00 0.00 4.45
99 100 2.541547 TACTGCACCATGAGCCAGGC 62.542 60.000 1.84 1.84 0.00 4.85
100 101 3.931190 CTGCACCATGAGCCAGGCA 62.931 63.158 15.80 0.00 0.00 4.75
101 102 2.677524 GCACCATGAGCCAGGCAA 60.678 61.111 15.80 0.82 0.00 4.52
102 103 2.277591 GCACCATGAGCCAGGCAAA 61.278 57.895 15.80 0.37 0.00 3.68
103 104 1.888018 CACCATGAGCCAGGCAAAG 59.112 57.895 15.80 0.00 0.00 2.77
104 105 0.609957 CACCATGAGCCAGGCAAAGA 60.610 55.000 15.80 0.00 0.00 2.52
105 106 0.333993 ACCATGAGCCAGGCAAAGAT 59.666 50.000 15.80 0.00 0.00 2.40
106 107 1.030457 CCATGAGCCAGGCAAAGATC 58.970 55.000 15.80 1.92 0.00 2.75
107 108 1.409802 CCATGAGCCAGGCAAAGATCT 60.410 52.381 15.80 0.00 0.00 2.75
108 109 2.376109 CATGAGCCAGGCAAAGATCTT 58.624 47.619 15.80 0.88 0.00 2.40
109 110 1.830279 TGAGCCAGGCAAAGATCTTG 58.170 50.000 15.80 4.72 0.00 3.02
110 111 0.455005 GAGCCAGGCAAAGATCTTGC 59.545 55.000 15.80 14.01 44.22 4.01
111 112 0.251474 AGCCAGGCAAAGATCTTGCA 60.251 50.000 22.72 0.00 46.58 4.08
112 113 0.172803 GCCAGGCAAAGATCTTGCAG 59.827 55.000 22.72 16.71 46.58 4.41
113 114 0.172803 CCAGGCAAAGATCTTGCAGC 59.827 55.000 22.72 19.39 46.58 5.25
114 115 0.179171 CAGGCAAAGATCTTGCAGCG 60.179 55.000 22.72 11.93 46.58 5.18
115 116 0.607489 AGGCAAAGATCTTGCAGCGT 60.607 50.000 22.72 18.44 46.58 5.07
116 117 1.086696 GGCAAAGATCTTGCAGCGTA 58.913 50.000 22.72 0.00 46.58 4.42
117 118 1.468520 GGCAAAGATCTTGCAGCGTAA 59.531 47.619 22.72 0.00 46.58 3.18
118 119 2.098117 GGCAAAGATCTTGCAGCGTAAT 59.902 45.455 22.72 0.00 46.58 1.89
119 120 3.428045 GGCAAAGATCTTGCAGCGTAATT 60.428 43.478 22.72 0.00 46.58 1.40
120 121 3.545078 GCAAAGATCTTGCAGCGTAATTG 59.455 43.478 9.17 0.38 44.34 2.32
121 122 4.726416 CAAAGATCTTGCAGCGTAATTGT 58.274 39.130 9.17 0.00 0.00 2.71
122 123 5.156355 CAAAGATCTTGCAGCGTAATTGTT 58.844 37.500 9.17 0.00 0.00 2.83
123 124 4.346734 AGATCTTGCAGCGTAATTGTTG 57.653 40.909 0.00 0.00 0.00 3.33
124 125 2.330231 TCTTGCAGCGTAATTGTTGC 57.670 45.000 0.00 0.00 45.10 4.17
125 126 1.068610 TCTTGCAGCGTAATTGTTGCC 60.069 47.619 2.83 0.00 44.37 4.52
126 127 0.670706 TTGCAGCGTAATTGTTGCCA 59.329 45.000 2.83 0.00 44.37 4.92
127 128 0.670706 TGCAGCGTAATTGTTGCCAA 59.329 45.000 2.83 0.00 44.37 4.52
128 129 1.067669 TGCAGCGTAATTGTTGCCAAA 59.932 42.857 2.83 0.00 44.37 3.28
129 130 2.288702 TGCAGCGTAATTGTTGCCAAAT 60.289 40.909 2.83 0.00 44.37 2.32
130 131 2.092524 GCAGCGTAATTGTTGCCAAATG 59.907 45.455 0.00 0.00 39.81 2.32
131 132 2.092524 CAGCGTAATTGTTGCCAAATGC 59.907 45.455 0.00 0.00 41.77 3.56
132 133 1.393196 GCGTAATTGTTGCCAAATGCC 59.607 47.619 0.00 0.00 40.16 4.40
133 134 1.999024 CGTAATTGTTGCCAAATGCCC 59.001 47.619 0.00 0.00 40.16 5.36
134 135 2.353605 CGTAATTGTTGCCAAATGCCCT 60.354 45.455 0.00 0.00 40.16 5.19
135 136 3.119316 CGTAATTGTTGCCAAATGCCCTA 60.119 43.478 0.00 0.00 40.16 3.53
136 137 3.333029 AATTGTTGCCAAATGCCCTAC 57.667 42.857 0.00 0.00 40.16 3.18
137 138 2.008242 TTGTTGCCAAATGCCCTACT 57.992 45.000 0.00 0.00 40.16 2.57
138 139 1.544724 TGTTGCCAAATGCCCTACTC 58.455 50.000 0.00 0.00 40.16 2.59
139 140 0.817654 GTTGCCAAATGCCCTACTCC 59.182 55.000 0.00 0.00 40.16 3.85
140 141 0.679640 TTGCCAAATGCCCTACTCCG 60.680 55.000 0.00 0.00 40.16 4.63
141 142 1.077716 GCCAAATGCCCTACTCCGT 60.078 57.895 0.00 0.00 0.00 4.69
142 143 1.095807 GCCAAATGCCCTACTCCGTC 61.096 60.000 0.00 0.00 0.00 4.79
143 144 0.810031 CCAAATGCCCTACTCCGTCG 60.810 60.000 0.00 0.00 0.00 5.12
144 145 0.174845 CAAATGCCCTACTCCGTCGA 59.825 55.000 0.00 0.00 0.00 4.20
145 146 1.120530 AAATGCCCTACTCCGTCGAT 58.879 50.000 0.00 0.00 0.00 3.59
146 147 0.389391 AATGCCCTACTCCGTCGATG 59.611 55.000 0.00 0.00 0.00 3.84
147 148 0.467474 ATGCCCTACTCCGTCGATGA 60.467 55.000 6.11 0.00 0.00 2.92
148 149 0.681887 TGCCCTACTCCGTCGATGAA 60.682 55.000 6.11 0.00 0.00 2.57
149 150 0.030908 GCCCTACTCCGTCGATGAAG 59.969 60.000 6.11 0.00 0.00 3.02
150 151 0.669077 CCCTACTCCGTCGATGAAGG 59.331 60.000 6.11 7.19 32.60 3.46
151 152 0.669077 CCTACTCCGTCGATGAAGGG 59.331 60.000 6.11 0.00 32.23 3.95
152 153 0.669077 CTACTCCGTCGATGAAGGGG 59.331 60.000 6.11 1.74 37.68 4.79
153 154 0.033796 TACTCCGTCGATGAAGGGGT 60.034 55.000 6.11 9.23 46.03 4.95
154 155 1.141881 CTCCGTCGATGAAGGGGTG 59.858 63.158 6.11 0.00 32.23 4.61
155 156 2.511600 CCGTCGATGAAGGGGTGC 60.512 66.667 6.11 0.00 0.00 5.01
156 157 2.885644 CGTCGATGAAGGGGTGCG 60.886 66.667 0.00 0.00 0.00 5.34
157 158 2.511600 GTCGATGAAGGGGTGCGG 60.512 66.667 0.00 0.00 0.00 5.69
158 159 4.467084 TCGATGAAGGGGTGCGGC 62.467 66.667 0.00 0.00 0.00 6.53
159 160 4.473520 CGATGAAGGGGTGCGGCT 62.474 66.667 0.00 0.00 0.00 5.52
160 161 2.514824 GATGAAGGGGTGCGGCTC 60.515 66.667 0.00 0.00 0.00 4.70
161 162 4.115199 ATGAAGGGGTGCGGCTCC 62.115 66.667 12.54 12.54 38.29 4.70
169 170 3.730761 GTGCGGCTCCTGCTTGTG 61.731 66.667 0.00 0.00 39.59 3.33
170 171 4.254709 TGCGGCTCCTGCTTGTGT 62.255 61.111 0.00 0.00 39.59 3.72
171 172 2.980233 GCGGCTCCTGCTTGTGTT 60.980 61.111 0.00 0.00 39.59 3.32
172 173 2.949106 CGGCTCCTGCTTGTGTTG 59.051 61.111 0.00 0.00 39.59 3.33
173 174 2.620112 CGGCTCCTGCTTGTGTTGG 61.620 63.158 0.00 0.00 39.59 3.77
174 175 2.647297 GCTCCTGCTTGTGTTGGC 59.353 61.111 0.00 0.00 36.03 4.52
175 176 2.924105 GCTCCTGCTTGTGTTGGCC 61.924 63.158 0.00 0.00 36.03 5.36
176 177 2.594303 TCCTGCTTGTGTTGGCCG 60.594 61.111 0.00 0.00 0.00 6.13
177 178 2.594303 CCTGCTTGTGTTGGCCGA 60.594 61.111 0.00 0.00 0.00 5.54
178 179 1.973281 CCTGCTTGTGTTGGCCGAT 60.973 57.895 0.00 0.00 0.00 4.18
179 180 1.503542 CTGCTTGTGTTGGCCGATC 59.496 57.895 0.00 0.00 0.00 3.69
180 181 1.926511 CTGCTTGTGTTGGCCGATCC 61.927 60.000 0.00 0.00 0.00 3.36
181 182 1.971167 GCTTGTGTTGGCCGATCCA 60.971 57.895 0.00 0.00 44.85 3.41
188 189 4.444838 TGGCCGATCCAACGACCG 62.445 66.667 0.00 0.00 43.21 4.79
191 192 4.485834 CCGATCCAACGACCGCGA 62.486 66.667 8.23 0.00 41.64 5.87
192 193 2.949678 CGATCCAACGACCGCGAG 60.950 66.667 8.23 0.00 41.64 5.03
211 212 4.610714 GGAAGGATCCGGCGGCTC 62.611 72.222 23.83 22.22 35.59 4.70
212 213 4.951963 GAAGGATCCGGCGGCTCG 62.952 72.222 23.83 0.00 0.00 5.03
234 235 3.717842 CCCGACTGGTTTTTCAGGA 57.282 52.632 0.00 0.00 38.98 3.86
235 236 1.975660 CCCGACTGGTTTTTCAGGAA 58.024 50.000 0.00 0.00 38.98 3.36
236 237 2.303175 CCCGACTGGTTTTTCAGGAAA 58.697 47.619 0.00 0.00 38.98 3.13
237 238 2.890945 CCCGACTGGTTTTTCAGGAAAT 59.109 45.455 0.00 0.00 38.98 2.17
238 239 3.057526 CCCGACTGGTTTTTCAGGAAATC 60.058 47.826 0.00 0.00 38.98 2.17
239 240 3.568007 CCGACTGGTTTTTCAGGAAATCA 59.432 43.478 0.00 0.00 38.98 2.57
241 242 4.550422 GACTGGTTTTTCAGGAAATCAGC 58.450 43.478 9.78 7.79 46.70 4.26
242 243 3.321968 ACTGGTTTTTCAGGAAATCAGCC 59.678 43.478 9.78 6.40 46.70 4.85
243 244 3.575687 CTGGTTTTTCAGGAAATCAGCCT 59.424 43.478 0.00 0.00 39.91 4.58
244 245 6.961376 ACTGGTTTTTCAGGAAATCAGCCTG 61.961 44.000 9.78 0.00 46.70 4.85
251 252 2.686915 CAGGAAATCAGCCTGTTGATCC 59.313 50.000 0.00 0.00 46.19 3.36
252 253 2.309755 AGGAAATCAGCCTGTTGATCCA 59.690 45.455 9.36 0.00 36.81 3.41
253 254 3.053095 AGGAAATCAGCCTGTTGATCCAT 60.053 43.478 9.36 0.00 36.81 3.41
254 255 4.166725 AGGAAATCAGCCTGTTGATCCATA 59.833 41.667 9.36 0.00 36.81 2.74
255 256 4.518211 GGAAATCAGCCTGTTGATCCATAG 59.482 45.833 0.00 0.00 36.81 2.23
256 257 2.627515 TCAGCCTGTTGATCCATAGC 57.372 50.000 0.00 0.00 0.00 2.97
257 258 1.839354 TCAGCCTGTTGATCCATAGCA 59.161 47.619 0.00 0.00 0.00 3.49
258 259 2.158856 TCAGCCTGTTGATCCATAGCAG 60.159 50.000 0.00 0.00 0.00 4.24
259 260 0.950116 GCCTGTTGATCCATAGCAGC 59.050 55.000 0.00 0.00 0.00 5.25
260 261 1.476471 GCCTGTTGATCCATAGCAGCT 60.476 52.381 0.00 0.00 0.00 4.24
261 262 2.219458 CCTGTTGATCCATAGCAGCTG 58.781 52.381 10.11 10.11 0.00 4.24
262 263 2.421107 CCTGTTGATCCATAGCAGCTGT 60.421 50.000 16.64 4.79 0.00 4.40
263 264 2.871022 CTGTTGATCCATAGCAGCTGTC 59.129 50.000 16.64 7.83 0.00 3.51
264 265 2.236893 TGTTGATCCATAGCAGCTGTCA 59.763 45.455 16.64 6.19 0.00 3.58
265 266 3.118149 TGTTGATCCATAGCAGCTGTCAT 60.118 43.478 16.64 5.96 0.00 3.06
266 267 3.851458 TGATCCATAGCAGCTGTCATT 57.149 42.857 16.64 1.54 0.00 2.57
267 268 4.160642 TGATCCATAGCAGCTGTCATTT 57.839 40.909 16.64 0.00 0.00 2.32
268 269 4.132336 TGATCCATAGCAGCTGTCATTTC 58.868 43.478 16.64 5.10 0.00 2.17
269 270 3.632643 TCCATAGCAGCTGTCATTTCA 57.367 42.857 16.64 0.00 0.00 2.69
270 271 3.954200 TCCATAGCAGCTGTCATTTCAA 58.046 40.909 16.64 0.00 0.00 2.69
271 272 4.334552 TCCATAGCAGCTGTCATTTCAAA 58.665 39.130 16.64 0.00 0.00 2.69
272 273 4.951715 TCCATAGCAGCTGTCATTTCAAAT 59.048 37.500 16.64 0.00 0.00 2.32
273 274 6.121590 TCCATAGCAGCTGTCATTTCAAATA 58.878 36.000 16.64 0.00 0.00 1.40
274 275 6.261603 TCCATAGCAGCTGTCATTTCAAATAG 59.738 38.462 16.64 0.00 0.00 1.73
275 276 6.039047 CCATAGCAGCTGTCATTTCAAATAGT 59.961 38.462 16.64 0.00 0.00 2.12
276 277 5.972107 AGCAGCTGTCATTTCAAATAGTT 57.028 34.783 16.64 0.00 0.00 2.24
277 278 6.336842 AGCAGCTGTCATTTCAAATAGTTT 57.663 33.333 16.64 0.00 0.00 2.66
278 279 6.752168 AGCAGCTGTCATTTCAAATAGTTTT 58.248 32.000 16.64 0.00 0.00 2.43
279 280 7.885297 AGCAGCTGTCATTTCAAATAGTTTTA 58.115 30.769 16.64 0.00 0.00 1.52
280 281 8.526147 AGCAGCTGTCATTTCAAATAGTTTTAT 58.474 29.630 16.64 0.00 0.00 1.40
281 282 9.787532 GCAGCTGTCATTTCAAATAGTTTTATA 57.212 29.630 16.64 0.00 0.00 0.98
322 323 9.516314 AAACAGTCTTGCTAAATTTTAGTCAAC 57.484 29.630 15.69 10.58 0.00 3.18
323 324 8.451908 ACAGTCTTGCTAAATTTTAGTCAACT 57.548 30.769 15.69 12.08 0.00 3.16
324 325 8.345565 ACAGTCTTGCTAAATTTTAGTCAACTG 58.654 33.333 23.26 23.26 0.00 3.16
325 326 8.559536 CAGTCTTGCTAAATTTTAGTCAACTGA 58.440 33.333 22.12 15.92 0.00 3.41
326 327 8.778358 AGTCTTGCTAAATTTTAGTCAACTGAG 58.222 33.333 15.69 9.39 0.00 3.35
327 328 8.774586 GTCTTGCTAAATTTTAGTCAACTGAGA 58.225 33.333 15.69 10.94 0.00 3.27
328 329 8.774586 TCTTGCTAAATTTTAGTCAACTGAGAC 58.225 33.333 15.69 0.00 38.81 3.36
330 331 8.677148 TGCTAAATTTTAGTCAACTGAGACTT 57.323 30.769 15.69 0.00 46.26 3.01
331 332 9.772973 TGCTAAATTTTAGTCAACTGAGACTTA 57.227 29.630 15.69 2.37 46.26 2.24
338 339 8.758633 TTTAGTCAACTGAGACTTAGTTATGC 57.241 34.615 11.91 6.11 46.26 3.14
339 340 5.725362 AGTCAACTGAGACTTAGTTATGCC 58.275 41.667 11.91 2.01 46.26 4.40
340 341 5.482175 AGTCAACTGAGACTTAGTTATGCCT 59.518 40.000 11.91 3.97 46.26 4.75
341 342 6.014156 AGTCAACTGAGACTTAGTTATGCCTT 60.014 38.462 11.91 0.00 46.26 4.35
342 343 6.091441 GTCAACTGAGACTTAGTTATGCCTTG 59.909 42.308 11.91 0.26 36.29 3.61
343 344 6.014584 TCAACTGAGACTTAGTTATGCCTTGA 60.015 38.462 11.91 2.54 36.29 3.02
344 345 6.552445 ACTGAGACTTAGTTATGCCTTGAT 57.448 37.500 0.00 0.00 0.00 2.57
345 346 6.578023 ACTGAGACTTAGTTATGCCTTGATC 58.422 40.000 0.00 0.00 0.00 2.92
346 347 5.592054 TGAGACTTAGTTATGCCTTGATCG 58.408 41.667 0.00 0.00 0.00 3.69
347 348 5.359860 TGAGACTTAGTTATGCCTTGATCGA 59.640 40.000 0.00 0.00 0.00 3.59
348 349 6.040955 TGAGACTTAGTTATGCCTTGATCGAT 59.959 38.462 0.00 0.00 0.00 3.59
349 350 6.219473 AGACTTAGTTATGCCTTGATCGATG 58.781 40.000 0.54 0.00 0.00 3.84
350 351 4.752101 ACTTAGTTATGCCTTGATCGATGC 59.248 41.667 0.54 0.00 0.00 3.91
351 352 3.482156 AGTTATGCCTTGATCGATGCT 57.518 42.857 0.54 0.96 0.00 3.79
352 353 4.607293 AGTTATGCCTTGATCGATGCTA 57.393 40.909 0.54 0.00 0.00 3.49
353 354 5.157940 AGTTATGCCTTGATCGATGCTAT 57.842 39.130 0.54 6.21 0.00 2.97
354 355 6.286240 AGTTATGCCTTGATCGATGCTATA 57.714 37.500 0.54 5.43 0.00 1.31
355 356 6.882656 AGTTATGCCTTGATCGATGCTATAT 58.117 36.000 0.54 0.50 0.00 0.86
356 357 7.334090 AGTTATGCCTTGATCGATGCTATATT 58.666 34.615 0.54 0.00 0.00 1.28
357 358 7.493971 AGTTATGCCTTGATCGATGCTATATTC 59.506 37.037 0.54 0.00 0.00 1.75
358 359 5.151297 TGCCTTGATCGATGCTATATTCA 57.849 39.130 0.54 0.00 0.00 2.57
359 360 5.737860 TGCCTTGATCGATGCTATATTCAT 58.262 37.500 0.54 0.00 0.00 2.57
360 361 5.583457 TGCCTTGATCGATGCTATATTCATG 59.417 40.000 0.54 0.00 0.00 3.07
361 362 5.007430 GCCTTGATCGATGCTATATTCATGG 59.993 44.000 0.54 5.82 33.73 3.66
362 363 5.526479 CCTTGATCGATGCTATATTCATGGG 59.474 44.000 0.54 0.00 0.00 4.00
363 364 5.937975 TGATCGATGCTATATTCATGGGA 57.062 39.130 0.54 0.00 0.00 4.37
364 365 6.490241 TGATCGATGCTATATTCATGGGAT 57.510 37.500 0.54 0.00 0.00 3.85
365 366 6.285990 TGATCGATGCTATATTCATGGGATG 58.714 40.000 0.54 0.00 0.00 3.51
366 367 5.682234 TCGATGCTATATTCATGGGATGT 57.318 39.130 0.00 0.00 0.00 3.06
367 368 6.053632 TCGATGCTATATTCATGGGATGTT 57.946 37.500 0.00 0.00 0.00 2.71
368 369 7.181569 TCGATGCTATATTCATGGGATGTTA 57.818 36.000 0.00 0.00 0.00 2.41
369 370 7.795047 TCGATGCTATATTCATGGGATGTTAT 58.205 34.615 0.00 0.00 0.00 1.89
370 371 8.267183 TCGATGCTATATTCATGGGATGTTATT 58.733 33.333 0.00 0.00 0.00 1.40
371 372 8.896744 CGATGCTATATTCATGGGATGTTATTT 58.103 33.333 0.00 0.00 0.00 1.40
380 381 7.744087 TCATGGGATGTTATTTTAAGATCCG 57.256 36.000 13.98 4.76 40.04 4.18
381 382 7.287061 TCATGGGATGTTATTTTAAGATCCGT 58.713 34.615 13.98 6.02 40.04 4.69
382 383 6.935741 TGGGATGTTATTTTAAGATCCGTG 57.064 37.500 13.98 0.00 40.04 4.94
383 384 6.419791 TGGGATGTTATTTTAAGATCCGTGT 58.580 36.000 13.98 0.00 40.04 4.49
384 385 7.566569 TGGGATGTTATTTTAAGATCCGTGTA 58.433 34.615 13.98 2.71 40.04 2.90
385 386 8.047911 TGGGATGTTATTTTAAGATCCGTGTAA 58.952 33.333 13.98 0.35 40.04 2.41
386 387 8.895737 GGGATGTTATTTTAAGATCCGTGTAAA 58.104 33.333 13.98 0.00 40.04 2.01
419 420 7.703328 AGTTATTTTTCCTGCATGTTATACCG 58.297 34.615 0.00 0.00 0.00 4.02
420 421 4.364415 TTTTTCCTGCATGTTATACCGC 57.636 40.909 0.00 0.00 0.00 5.68
421 422 2.700722 TTCCTGCATGTTATACCGCA 57.299 45.000 0.00 0.00 0.00 5.69
422 423 1.948104 TCCTGCATGTTATACCGCAC 58.052 50.000 0.00 0.00 0.00 5.34
431 432 6.127591 TGCATGTTATACCGCACCTTTAAAAT 60.128 34.615 0.00 0.00 0.00 1.82
434 435 9.959749 CATGTTATACCGCACCTTTAAAATAAT 57.040 29.630 0.00 0.00 0.00 1.28
454 455 2.109126 GCTCTGTGGCGGACAATCC 61.109 63.158 0.00 0.00 32.80 3.01
461 462 1.543802 GTGGCGGACAATCCAAATTGA 59.456 47.619 5.22 0.00 44.25 2.57
476 477 4.992319 CCAAATTGAACGTCTAGTACCACA 59.008 41.667 0.00 0.00 0.00 4.17
600 601 9.591404 CGACATGCATAGATATTTCTTTTTCTC 57.409 33.333 0.00 0.00 33.17 2.87
605 606 6.853362 GCATAGATATTTCTTTTTCTCACGGC 59.147 38.462 0.00 0.00 33.17 5.68
718 720 5.970501 TTTAAGAGGGAGGAGGTTAATCC 57.029 43.478 0.00 0.00 39.89 3.01
967 997 3.755905 GGGAAAGCAGAGAGAAAGAAAGG 59.244 47.826 0.00 0.00 0.00 3.11
971 1001 2.905736 AGCAGAGAGAAAGAAAGGAGCT 59.094 45.455 0.00 0.00 0.00 4.09
1132 1168 3.426323 GCTTCGCTGTGCCTTATTTTAC 58.574 45.455 0.00 0.00 0.00 2.01
1398 1450 9.258826 TGAATATTGCGGATTTCATTTATTTGG 57.741 29.630 0.00 0.00 0.00 3.28
1402 1454 4.099266 TGCGGATTTCATTTATTTGGGGAG 59.901 41.667 0.00 0.00 0.00 4.30
1414 1466 0.539986 TTGGGGAGCTCGGTATTGTC 59.460 55.000 7.83 0.00 0.00 3.18
1447 1499 4.970174 CGAGTGTACGTAGCTCGG 57.030 61.111 27.93 16.60 45.60 4.63
1450 1502 0.745845 GAGTGTACGTAGCTCGGGGA 60.746 60.000 10.22 0.00 44.69 4.81
1471 1523 0.742990 TTTAGGGCATTCGTCGGCTG 60.743 55.000 0.00 0.00 0.00 4.85
1472 1524 1.895020 TTAGGGCATTCGTCGGCTGT 61.895 55.000 0.00 0.00 0.00 4.40
1523 1575 3.947196 TGGATGTCCAAATGATCTTTCGG 59.053 43.478 0.00 0.00 44.35 4.30
1524 1576 4.199310 GGATGTCCAAATGATCTTTCGGA 58.801 43.478 0.00 0.00 35.64 4.55
1525 1577 4.640201 GGATGTCCAAATGATCTTTCGGAA 59.360 41.667 2.72 0.00 35.64 4.30
1526 1578 5.220931 GGATGTCCAAATGATCTTTCGGAAG 60.221 44.000 2.72 0.00 35.64 3.46
1527 1579 3.440173 TGTCCAAATGATCTTTCGGAAGC 59.560 43.478 2.72 0.00 32.75 3.86
1528 1580 3.440173 GTCCAAATGATCTTTCGGAAGCA 59.560 43.478 2.72 0.00 32.75 3.91
1529 1581 4.078537 TCCAAATGATCTTTCGGAAGCAA 58.921 39.130 0.00 0.00 32.75 3.91
1530 1582 4.706476 TCCAAATGATCTTTCGGAAGCAAT 59.294 37.500 0.00 0.00 32.75 3.56
1531 1583 5.039333 CCAAATGATCTTTCGGAAGCAATC 58.961 41.667 0.00 0.00 32.75 2.67
1532 1584 4.542662 AATGATCTTTCGGAAGCAATCG 57.457 40.909 0.00 0.00 32.75 3.34
1533 1585 3.245518 TGATCTTTCGGAAGCAATCGA 57.754 42.857 0.00 0.00 32.75 3.59
1534 1586 3.595173 TGATCTTTCGGAAGCAATCGAA 58.405 40.909 0.00 4.38 42.56 3.71
1535 1587 3.618594 TGATCTTTCGGAAGCAATCGAAG 59.381 43.478 0.00 0.00 44.47 3.79
1536 1588 3.040147 TCTTTCGGAAGCAATCGAAGT 57.960 42.857 0.00 0.00 44.47 3.01
1537 1589 3.399330 TCTTTCGGAAGCAATCGAAGTT 58.601 40.909 0.00 0.00 44.47 2.66
1538 1590 3.186409 TCTTTCGGAAGCAATCGAAGTTG 59.814 43.478 0.00 0.00 44.47 3.16
1539 1591 1.438651 TCGGAAGCAATCGAAGTTGG 58.561 50.000 0.00 0.00 32.11 3.77
1540 1592 1.001520 TCGGAAGCAATCGAAGTTGGA 59.998 47.619 0.00 0.00 32.11 3.53
1541 1593 1.394917 CGGAAGCAATCGAAGTTGGAG 59.605 52.381 0.00 0.00 0.00 3.86
1542 1594 1.740025 GGAAGCAATCGAAGTTGGAGG 59.260 52.381 0.00 0.00 0.00 4.30
1543 1595 2.427506 GAAGCAATCGAAGTTGGAGGT 58.572 47.619 0.00 0.00 0.00 3.85
1544 1596 2.100605 AGCAATCGAAGTTGGAGGTC 57.899 50.000 0.00 0.00 0.00 3.85
1545 1597 1.347707 AGCAATCGAAGTTGGAGGTCA 59.652 47.619 0.00 0.00 0.00 4.02
1546 1598 1.734465 GCAATCGAAGTTGGAGGTCAG 59.266 52.381 0.00 0.00 0.00 3.51
1547 1599 2.872038 GCAATCGAAGTTGGAGGTCAGT 60.872 50.000 0.00 0.00 0.00 3.41
1548 1600 3.616560 GCAATCGAAGTTGGAGGTCAGTA 60.617 47.826 0.00 0.00 0.00 2.74
1549 1601 4.759782 CAATCGAAGTTGGAGGTCAGTAT 58.240 43.478 0.00 0.00 0.00 2.12
1550 1602 5.178797 CAATCGAAGTTGGAGGTCAGTATT 58.821 41.667 0.00 0.00 0.00 1.89
1551 1603 4.188247 TCGAAGTTGGAGGTCAGTATTG 57.812 45.455 0.00 0.00 0.00 1.90
1552 1604 3.576982 TCGAAGTTGGAGGTCAGTATTGT 59.423 43.478 0.00 0.00 0.00 2.71
1553 1605 4.039973 TCGAAGTTGGAGGTCAGTATTGTT 59.960 41.667 0.00 0.00 0.00 2.83
1554 1606 4.755123 CGAAGTTGGAGGTCAGTATTGTTT 59.245 41.667 0.00 0.00 0.00 2.83
1555 1607 5.238650 CGAAGTTGGAGGTCAGTATTGTTTT 59.761 40.000 0.00 0.00 0.00 2.43
1556 1608 6.238648 CGAAGTTGGAGGTCAGTATTGTTTTT 60.239 38.462 0.00 0.00 0.00 1.94
1577 1629 5.798015 TTTTTAACACAGTACAGACGCAA 57.202 34.783 0.00 0.00 0.00 4.85
1579 1631 1.217882 AACACAGTACAGACGCAAGC 58.782 50.000 0.00 0.00 45.62 4.01
1580 1632 0.939577 ACACAGTACAGACGCAAGCG 60.940 55.000 13.50 13.50 46.03 4.68
1581 1633 2.022129 ACAGTACAGACGCAAGCGC 61.022 57.895 15.09 0.00 44.19 5.92
1582 1634 1.734477 CAGTACAGACGCAAGCGCT 60.734 57.895 15.09 2.64 44.19 5.92
1583 1635 1.444553 AGTACAGACGCAAGCGCTC 60.445 57.895 12.06 11.06 44.19 5.03
1584 1636 2.504026 TACAGACGCAAGCGCTCG 60.504 61.111 12.06 14.49 44.19 5.03
1585 1637 3.263503 TACAGACGCAAGCGCTCGT 62.264 57.895 22.23 22.23 44.19 4.18
1586 1638 1.914531 TACAGACGCAAGCGCTCGTA 61.915 55.000 22.11 9.95 44.19 3.43
1587 1639 1.874019 CAGACGCAAGCGCTCGTAT 60.874 57.895 22.11 17.26 44.19 3.06
1588 1640 0.591488 CAGACGCAAGCGCTCGTATA 60.591 55.000 22.11 0.00 44.19 1.47
1589 1641 0.099968 AGACGCAAGCGCTCGTATAA 59.900 50.000 22.11 0.00 44.19 0.98
1661 1713 1.682854 TCTCCCTCGTACGTTTGTGTT 59.317 47.619 16.05 0.00 0.00 3.32
1686 1738 4.566488 GGATATGAAATCCAATCGGCTCCT 60.566 45.833 0.00 0.00 38.09 3.69
1707 1759 6.800543 TCCTCAAAATTCAATTGTTTCGACA 58.199 32.000 5.13 0.00 0.00 4.35
1708 1760 7.261325 TCCTCAAAATTCAATTGTTTCGACAA 58.739 30.769 5.13 0.00 0.00 3.18
1731 1783 1.486726 CGAGCTCCCCCAAATCTAACT 59.513 52.381 8.47 0.00 0.00 2.24
1740 1792 5.669904 TCCCCCAAATCTAACTCATATGTGA 59.330 40.000 11.60 0.00 0.00 3.58
1772 1824 5.598416 TGATTGTTCAGACTATCCGTCAT 57.402 39.130 0.00 0.00 45.32 3.06
1795 1847 1.167781 TATCTATGACGCGCGGTCCA 61.168 55.000 35.22 26.82 45.46 4.02
1805 1857 1.206115 GCGCGGTCCAAACACAAAAG 61.206 55.000 8.83 0.00 0.00 2.27
1889 1941 0.108329 ACGTAGTGGGCCATTTCTCG 60.108 55.000 10.70 13.69 42.51 4.04
1890 1942 0.108329 CGTAGTGGGCCATTTCTCGT 60.108 55.000 10.70 0.00 0.00 4.18
1919 1971 8.664669 AGCCCTCTCCTTTAAAATTTAATGAA 57.335 30.769 11.46 0.00 0.00 2.57
1935 1987 3.580084 AAGCCCACCTCAGCTTCA 58.420 55.556 0.00 0.00 46.11 3.02
1995 2047 1.557269 ATCGCCAAGCAGGAGTCCTT 61.557 55.000 9.68 0.00 41.22 3.36
2023 2075 0.694444 GCCCTAATCCCCTCTCCACA 60.694 60.000 0.00 0.00 0.00 4.17
2030 2082 1.279496 TCCCCTCTCCACATGTTCAG 58.721 55.000 0.00 0.00 0.00 3.02
2089 2141 0.902984 TACGCCACCCATGACACTCT 60.903 55.000 0.00 0.00 0.00 3.24
2136 2188 6.472016 TGTCTTCTTAGCCATTGACACATTA 58.528 36.000 0.00 0.00 30.78 1.90
2232 2284 4.724074 TGTCACCTCGTCGGTTATTAAT 57.276 40.909 0.00 0.00 46.37 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 4.464244 TCCTCCTACTTCACATGTCTTCAG 59.536 45.833 0.00 0.00 0.00 3.02
5 6 4.416516 TCCTCCTACTTCACATGTCTTCA 58.583 43.478 0.00 0.00 0.00 3.02
6 7 5.407407 TTCCTCCTACTTCACATGTCTTC 57.593 43.478 0.00 0.00 0.00 2.87
7 8 4.223923 CCTTCCTCCTACTTCACATGTCTT 59.776 45.833 0.00 0.00 0.00 3.01
8 9 3.772025 CCTTCCTCCTACTTCACATGTCT 59.228 47.826 0.00 0.00 0.00 3.41
9 10 3.680196 GCCTTCCTCCTACTTCACATGTC 60.680 52.174 0.00 0.00 0.00 3.06
10 11 2.237392 GCCTTCCTCCTACTTCACATGT 59.763 50.000 0.00 0.00 0.00 3.21
11 12 2.503356 AGCCTTCCTCCTACTTCACATG 59.497 50.000 0.00 0.00 0.00 3.21
12 13 2.769095 GAGCCTTCCTCCTACTTCACAT 59.231 50.000 0.00 0.00 34.35 3.21
13 14 2.180276 GAGCCTTCCTCCTACTTCACA 58.820 52.381 0.00 0.00 34.35 3.58
14 15 2.180276 TGAGCCTTCCTCCTACTTCAC 58.820 52.381 0.00 0.00 39.98 3.18
15 16 2.623418 TGAGCCTTCCTCCTACTTCA 57.377 50.000 0.00 0.00 39.98 3.02
16 17 3.304829 AGATGAGCCTTCCTCCTACTTC 58.695 50.000 0.00 0.00 39.98 3.01
17 18 3.413105 AGATGAGCCTTCCTCCTACTT 57.587 47.619 0.00 0.00 39.98 2.24
18 19 3.037549 CAAGATGAGCCTTCCTCCTACT 58.962 50.000 0.00 0.00 39.98 2.57
19 20 2.103941 CCAAGATGAGCCTTCCTCCTAC 59.896 54.545 0.00 0.00 39.98 3.18
20 21 2.023015 TCCAAGATGAGCCTTCCTCCTA 60.023 50.000 0.00 0.00 39.98 2.94
21 22 1.211456 CCAAGATGAGCCTTCCTCCT 58.789 55.000 0.00 0.00 39.98 3.69
22 23 1.140652 CTCCAAGATGAGCCTTCCTCC 59.859 57.143 0.00 0.00 39.98 4.30
23 24 2.114616 TCTCCAAGATGAGCCTTCCTC 58.885 52.381 0.00 0.00 41.15 3.71
24 25 1.836802 GTCTCCAAGATGAGCCTTCCT 59.163 52.381 0.00 0.00 32.22 3.36
25 26 1.134250 GGTCTCCAAGATGAGCCTTCC 60.134 57.143 0.00 0.00 32.22 3.46
26 27 1.556911 TGGTCTCCAAGATGAGCCTTC 59.443 52.381 0.00 0.00 32.87 3.46
27 28 1.661463 TGGTCTCCAAGATGAGCCTT 58.339 50.000 0.00 0.00 32.87 4.35
28 29 1.489649 CATGGTCTCCAAGATGAGCCT 59.510 52.381 0.00 0.00 36.95 4.58
29 30 1.487976 TCATGGTCTCCAAGATGAGCC 59.512 52.381 0.00 0.00 36.95 4.70
30 31 2.559440 GTCATGGTCTCCAAGATGAGC 58.441 52.381 0.00 0.00 36.95 4.26
31 32 2.819115 CGTCATGGTCTCCAAGATGAG 58.181 52.381 7.25 0.00 39.68 2.90
32 33 1.134699 GCGTCATGGTCTCCAAGATGA 60.135 52.381 14.67 2.78 39.68 2.92
33 34 1.293924 GCGTCATGGTCTCCAAGATG 58.706 55.000 8.34 8.34 40.10 2.90
34 35 0.179100 CGCGTCATGGTCTCCAAGAT 60.179 55.000 0.00 0.00 36.95 2.40
35 36 1.215382 CGCGTCATGGTCTCCAAGA 59.785 57.895 0.00 0.00 36.95 3.02
36 37 2.456119 GCGCGTCATGGTCTCCAAG 61.456 63.158 8.43 0.00 36.95 3.61
37 38 2.434185 GCGCGTCATGGTCTCCAA 60.434 61.111 8.43 0.00 36.95 3.53
38 39 4.794439 CGCGCGTCATGGTCTCCA 62.794 66.667 24.19 0.00 38.19 3.86
51 52 2.067453 GACAAGTGATAGACGCGCGC 62.067 60.000 32.58 23.91 0.00 6.86
52 53 1.472276 GGACAAGTGATAGACGCGCG 61.472 60.000 30.96 30.96 0.00 6.86
53 54 0.457853 TGGACAAGTGATAGACGCGC 60.458 55.000 5.73 0.00 0.00 6.86
54 55 1.269166 GTGGACAAGTGATAGACGCG 58.731 55.000 3.53 3.53 0.00 6.01
55 56 2.363788 TGTGGACAAGTGATAGACGC 57.636 50.000 0.00 0.00 0.00 5.19
56 57 2.993899 GGTTGTGGACAAGTGATAGACG 59.006 50.000 0.00 0.00 36.39 4.18
57 58 4.273148 AGGTTGTGGACAAGTGATAGAC 57.727 45.455 0.00 0.00 36.39 2.59
58 59 6.895756 AGTATAGGTTGTGGACAAGTGATAGA 59.104 38.462 0.00 0.00 36.39 1.98
59 60 6.980978 CAGTATAGGTTGTGGACAAGTGATAG 59.019 42.308 0.00 0.00 36.39 2.08
60 61 6.629515 GCAGTATAGGTTGTGGACAAGTGATA 60.630 42.308 0.00 0.00 36.39 2.15
61 62 5.734720 CAGTATAGGTTGTGGACAAGTGAT 58.265 41.667 0.00 0.00 36.39 3.06
62 63 4.562757 GCAGTATAGGTTGTGGACAAGTGA 60.563 45.833 0.00 0.00 36.39 3.41
63 64 3.684788 GCAGTATAGGTTGTGGACAAGTG 59.315 47.826 0.00 0.00 36.39 3.16
64 65 3.326588 TGCAGTATAGGTTGTGGACAAGT 59.673 43.478 0.00 0.00 36.39 3.16
65 66 3.684788 GTGCAGTATAGGTTGTGGACAAG 59.315 47.826 0.00 0.00 36.39 3.16
66 67 3.558321 GGTGCAGTATAGGTTGTGGACAA 60.558 47.826 0.00 0.00 33.28 3.18
67 68 2.027561 GGTGCAGTATAGGTTGTGGACA 60.028 50.000 0.00 0.00 33.28 4.02
68 69 2.027561 TGGTGCAGTATAGGTTGTGGAC 60.028 50.000 0.00 0.00 0.00 4.02
69 70 2.261729 TGGTGCAGTATAGGTTGTGGA 58.738 47.619 0.00 0.00 0.00 4.02
70 71 2.779755 TGGTGCAGTATAGGTTGTGG 57.220 50.000 0.00 0.00 0.00 4.17
71 72 3.872696 TCATGGTGCAGTATAGGTTGTG 58.127 45.455 0.00 0.00 0.00 3.33
72 73 3.682718 GCTCATGGTGCAGTATAGGTTGT 60.683 47.826 6.72 0.00 0.00 3.32
73 74 2.874701 GCTCATGGTGCAGTATAGGTTG 59.125 50.000 6.72 0.00 0.00 3.77
74 75 2.158755 GGCTCATGGTGCAGTATAGGTT 60.159 50.000 12.30 0.00 0.00 3.50
75 76 1.417890 GGCTCATGGTGCAGTATAGGT 59.582 52.381 12.30 0.00 0.00 3.08
76 77 1.417517 TGGCTCATGGTGCAGTATAGG 59.582 52.381 12.30 0.00 0.00 2.57
77 78 2.549563 CCTGGCTCATGGTGCAGTATAG 60.550 54.545 12.30 4.19 0.00 1.31
78 79 1.417517 CCTGGCTCATGGTGCAGTATA 59.582 52.381 12.30 0.00 0.00 1.47
79 80 0.182061 CCTGGCTCATGGTGCAGTAT 59.818 55.000 12.30 0.00 0.00 2.12
80 81 1.603842 CCTGGCTCATGGTGCAGTA 59.396 57.895 12.30 0.00 0.00 2.74
81 82 2.353958 CCTGGCTCATGGTGCAGT 59.646 61.111 12.30 0.00 0.00 4.40
82 83 3.138798 GCCTGGCTCATGGTGCAG 61.139 66.667 12.43 8.25 0.00 4.41
83 84 2.998301 TTTGCCTGGCTCATGGTGCA 62.998 55.000 21.03 0.00 0.00 4.57
84 85 2.221906 CTTTGCCTGGCTCATGGTGC 62.222 60.000 21.03 0.00 0.00 5.01
85 86 0.609957 TCTTTGCCTGGCTCATGGTG 60.610 55.000 21.03 3.45 0.00 4.17
86 87 0.333993 ATCTTTGCCTGGCTCATGGT 59.666 50.000 21.03 2.38 0.00 3.55
87 88 1.030457 GATCTTTGCCTGGCTCATGG 58.970 55.000 21.03 5.87 0.00 3.66
88 89 2.054232 AGATCTTTGCCTGGCTCATG 57.946 50.000 21.03 8.86 0.00 3.07
89 90 2.376109 CAAGATCTTTGCCTGGCTCAT 58.624 47.619 21.03 6.11 0.00 2.90
90 91 1.830279 CAAGATCTTTGCCTGGCTCA 58.170 50.000 21.03 3.38 0.00 4.26
91 92 0.455005 GCAAGATCTTTGCCTGGCTC 59.545 55.000 21.03 8.54 39.38 4.70
92 93 0.251474 TGCAAGATCTTTGCCTGGCT 60.251 50.000 21.03 0.00 44.32 4.75
93 94 0.172803 CTGCAAGATCTTTGCCTGGC 59.827 55.000 12.87 12.87 44.32 4.85
94 95 0.172803 GCTGCAAGATCTTTGCCTGG 59.827 55.000 20.15 13.89 44.32 4.45
95 96 0.179171 CGCTGCAAGATCTTTGCCTG 60.179 55.000 20.15 15.58 44.32 4.85
96 97 0.607489 ACGCTGCAAGATCTTTGCCT 60.607 50.000 20.15 8.24 44.32 4.75
97 98 1.086696 TACGCTGCAAGATCTTTGCC 58.913 50.000 20.15 8.37 44.32 4.52
98 99 2.900122 TTACGCTGCAAGATCTTTGC 57.100 45.000 17.68 17.68 45.11 3.68
99 100 4.726416 ACAATTACGCTGCAAGATCTTTG 58.274 39.130 4.86 2.98 34.07 2.77
100 101 5.156355 CAACAATTACGCTGCAAGATCTTT 58.844 37.500 4.86 0.00 34.07 2.52
101 102 4.726416 CAACAATTACGCTGCAAGATCTT 58.274 39.130 0.88 0.88 34.07 2.40
102 103 3.426695 GCAACAATTACGCTGCAAGATCT 60.427 43.478 0.00 0.00 34.07 2.75
103 104 2.848302 GCAACAATTACGCTGCAAGATC 59.152 45.455 0.00 0.00 34.07 2.75
104 105 2.415893 GGCAACAATTACGCTGCAAGAT 60.416 45.455 0.00 0.00 36.50 2.40
105 106 1.068610 GGCAACAATTACGCTGCAAGA 60.069 47.619 0.00 0.00 36.50 3.02
106 107 1.339711 GGCAACAATTACGCTGCAAG 58.660 50.000 0.00 0.00 36.50 4.01
107 108 3.488048 GGCAACAATTACGCTGCAA 57.512 47.368 0.00 0.00 36.50 4.08
121 122 3.345557 ACGGAGTAGGGCATTTGGCAA 62.346 52.381 6.45 0.00 43.02 4.52
122 123 1.847798 ACGGAGTAGGGCATTTGGCA 61.848 55.000 6.45 0.00 43.02 4.92
123 124 1.077716 ACGGAGTAGGGCATTTGGC 60.078 57.895 0.00 0.00 41.94 4.52
136 137 1.141881 CACCCCTTCATCGACGGAG 59.858 63.158 0.00 0.00 0.00 4.63
137 138 3.014085 GCACCCCTTCATCGACGGA 62.014 63.158 0.00 0.00 0.00 4.69
138 139 2.511600 GCACCCCTTCATCGACGG 60.512 66.667 0.00 0.00 0.00 4.79
139 140 2.885644 CGCACCCCTTCATCGACG 60.886 66.667 0.00 0.00 0.00 5.12
140 141 2.511600 CCGCACCCCTTCATCGAC 60.512 66.667 0.00 0.00 0.00 4.20
141 142 4.467084 GCCGCACCCCTTCATCGA 62.467 66.667 0.00 0.00 0.00 3.59
142 143 4.473520 AGCCGCACCCCTTCATCG 62.474 66.667 0.00 0.00 0.00 3.84
143 144 2.514824 GAGCCGCACCCCTTCATC 60.515 66.667 0.00 0.00 0.00 2.92
144 145 4.115199 GGAGCCGCACCCCTTCAT 62.115 66.667 0.00 0.00 0.00 2.57
146 147 4.785453 CAGGAGCCGCACCCCTTC 62.785 72.222 2.85 0.00 0.00 3.46
152 153 3.730761 CACAAGCAGGAGCCGCAC 61.731 66.667 0.00 0.00 43.56 5.34
153 154 3.772853 AACACAAGCAGGAGCCGCA 62.773 57.895 0.00 0.00 43.56 5.69
154 155 2.980233 AACACAAGCAGGAGCCGC 60.980 61.111 0.00 0.00 43.56 6.53
155 156 2.620112 CCAACACAAGCAGGAGCCG 61.620 63.158 0.00 0.00 43.56 5.52
156 157 2.924105 GCCAACACAAGCAGGAGCC 61.924 63.158 0.00 0.00 43.56 4.70
157 158 2.647297 GCCAACACAAGCAGGAGC 59.353 61.111 0.00 0.00 42.56 4.70
158 159 2.620112 CGGCCAACACAAGCAGGAG 61.620 63.158 2.24 0.00 0.00 3.69
159 160 2.410322 ATCGGCCAACACAAGCAGGA 62.410 55.000 2.24 0.00 0.00 3.86
160 161 1.926511 GATCGGCCAACACAAGCAGG 61.927 60.000 2.24 0.00 0.00 4.85
161 162 1.503542 GATCGGCCAACACAAGCAG 59.496 57.895 2.24 0.00 0.00 4.24
162 163 1.971167 GGATCGGCCAACACAAGCA 60.971 57.895 2.24 0.00 36.34 3.91
163 164 1.971167 TGGATCGGCCAACACAAGC 60.971 57.895 2.24 0.00 45.87 4.01
164 165 4.395519 TGGATCGGCCAACACAAG 57.604 55.556 2.24 0.00 45.87 3.16
174 175 4.485834 TCGCGGTCGTTGGATCGG 62.486 66.667 6.13 0.00 46.79 4.18
176 177 2.582498 CCTCGCGGTCGTTGGATC 60.582 66.667 6.13 0.00 36.96 3.36
177 178 4.143333 CCCTCGCGGTCGTTGGAT 62.143 66.667 6.13 0.00 36.96 3.41
180 181 4.367023 TTCCCCTCGCGGTCGTTG 62.367 66.667 6.13 0.00 36.96 4.10
181 182 4.065281 CTTCCCCTCGCGGTCGTT 62.065 66.667 6.13 0.00 36.96 3.85
184 185 3.153270 GATCCTTCCCCTCGCGGTC 62.153 68.421 6.13 0.00 0.00 4.79
185 186 3.155167 GATCCTTCCCCTCGCGGT 61.155 66.667 6.13 0.00 0.00 5.68
186 187 3.930012 GGATCCTTCCCCTCGCGG 61.930 72.222 6.13 0.00 35.84 6.46
187 188 4.286320 CGGATCCTTCCCCTCGCG 62.286 72.222 10.75 0.00 39.01 5.87
188 189 3.930012 CCGGATCCTTCCCCTCGC 61.930 72.222 10.75 0.00 39.01 5.03
189 190 3.930012 GCCGGATCCTTCCCCTCG 61.930 72.222 5.05 0.00 39.01 4.63
190 191 3.930012 CGCCGGATCCTTCCCCTC 61.930 72.222 5.05 0.00 39.01 4.30
194 195 4.610714 GAGCCGCCGGATCCTTCC 62.611 72.222 10.98 0.00 38.81 3.46
195 196 4.951963 CGAGCCGCCGGATCCTTC 62.952 72.222 16.77 0.00 34.17 3.46
215 216 3.690148 ATTTCCTGAAAAACCAGTCGGGT 60.690 43.478 0.00 0.00 41.29 5.28
216 217 1.975660 TTCCTGAAAAACCAGTCGGG 58.024 50.000 0.00 0.00 41.07 5.14
217 218 3.568007 TGATTTCCTGAAAAACCAGTCGG 59.432 43.478 0.00 0.00 33.56 4.79
218 219 4.787598 CTGATTTCCTGAAAAACCAGTCG 58.212 43.478 0.00 0.00 33.56 4.18
219 220 4.550422 GCTGATTTCCTGAAAAACCAGTC 58.450 43.478 15.14 3.37 35.62 3.51
220 221 3.321968 GGCTGATTTCCTGAAAAACCAGT 59.678 43.478 15.14 0.00 35.62 4.00
221 222 3.575687 AGGCTGATTTCCTGAAAAACCAG 59.424 43.478 12.00 12.00 35.97 4.00
222 223 3.575805 AGGCTGATTTCCTGAAAAACCA 58.424 40.909 0.00 0.00 33.56 3.67
231 232 2.309755 TGGATCAACAGGCTGATTTCCT 59.690 45.455 23.66 0.00 36.15 3.36
232 233 2.726821 TGGATCAACAGGCTGATTTCC 58.273 47.619 23.66 19.68 36.15 3.13
233 234 4.023365 GCTATGGATCAACAGGCTGATTTC 60.023 45.833 23.66 11.63 36.15 2.17
234 235 3.887716 GCTATGGATCAACAGGCTGATTT 59.112 43.478 23.66 2.46 36.15 2.17
235 236 3.117776 TGCTATGGATCAACAGGCTGATT 60.118 43.478 23.66 9.00 36.15 2.57
236 237 2.440627 TGCTATGGATCAACAGGCTGAT 59.559 45.455 23.66 6.45 38.79 2.90
237 238 1.839354 TGCTATGGATCAACAGGCTGA 59.161 47.619 23.66 0.00 0.00 4.26
238 239 2.219458 CTGCTATGGATCAACAGGCTG 58.781 52.381 14.16 14.16 0.00 4.85
239 240 1.476471 GCTGCTATGGATCAACAGGCT 60.476 52.381 0.00 0.00 0.00 4.58
240 241 0.950116 GCTGCTATGGATCAACAGGC 59.050 55.000 0.00 0.00 0.00 4.85
241 242 2.219458 CAGCTGCTATGGATCAACAGG 58.781 52.381 0.00 0.00 0.00 4.00
242 243 2.871022 GACAGCTGCTATGGATCAACAG 59.129 50.000 15.27 0.00 0.00 3.16
243 244 2.236893 TGACAGCTGCTATGGATCAACA 59.763 45.455 15.27 0.00 0.00 3.33
244 245 2.910199 TGACAGCTGCTATGGATCAAC 58.090 47.619 15.27 0.00 0.00 3.18
245 246 3.851458 ATGACAGCTGCTATGGATCAA 57.149 42.857 15.27 0.00 0.00 2.57
246 247 3.851458 AATGACAGCTGCTATGGATCA 57.149 42.857 15.27 8.59 0.00 2.92
247 248 4.132336 TGAAATGACAGCTGCTATGGATC 58.868 43.478 15.27 2.09 0.00 3.36
248 249 4.160642 TGAAATGACAGCTGCTATGGAT 57.839 40.909 15.27 0.00 0.00 3.41
249 250 3.632643 TGAAATGACAGCTGCTATGGA 57.367 42.857 15.27 0.00 0.00 3.41
250 251 4.707030 TTTGAAATGACAGCTGCTATGG 57.293 40.909 15.27 0.00 0.00 2.74
251 252 7.024340 ACTATTTGAAATGACAGCTGCTATG 57.976 36.000 15.27 0.00 0.00 2.23
252 253 7.636150 AACTATTTGAAATGACAGCTGCTAT 57.364 32.000 15.27 5.47 0.00 2.97
253 254 7.452880 AAACTATTTGAAATGACAGCTGCTA 57.547 32.000 15.27 2.79 0.00 3.49
254 255 5.972107 AACTATTTGAAATGACAGCTGCT 57.028 34.783 15.27 0.00 0.00 4.24
255 256 8.693542 ATAAAACTATTTGAAATGACAGCTGC 57.306 30.769 15.27 7.45 0.00 5.25
296 297 9.516314 GTTGACTAAAATTTAGCAAGACTGTTT 57.484 29.630 12.28 0.00 0.00 2.83
297 298 8.903820 AGTTGACTAAAATTTAGCAAGACTGTT 58.096 29.630 12.28 0.00 0.00 3.16
298 299 8.345565 CAGTTGACTAAAATTTAGCAAGACTGT 58.654 33.333 19.59 3.43 0.00 3.55
299 300 8.559536 TCAGTTGACTAAAATTTAGCAAGACTG 58.440 33.333 20.58 20.58 0.00 3.51
300 301 8.677148 TCAGTTGACTAAAATTTAGCAAGACT 57.323 30.769 12.28 9.52 0.00 3.24
301 302 8.774586 TCTCAGTTGACTAAAATTTAGCAAGAC 58.225 33.333 12.28 7.82 0.00 3.01
302 303 8.774586 GTCTCAGTTGACTAAAATTTAGCAAGA 58.225 33.333 12.28 10.35 34.39 3.02
303 304 8.778358 AGTCTCAGTTGACTAAAATTTAGCAAG 58.222 33.333 12.28 7.42 44.53 4.01
304 305 8.677148 AGTCTCAGTTGACTAAAATTTAGCAA 57.323 30.769 12.28 13.40 44.53 3.91
305 306 8.677148 AAGTCTCAGTTGACTAAAATTTAGCA 57.323 30.769 12.28 8.74 45.49 3.49
312 313 9.204570 GCATAACTAAGTCTCAGTTGACTAAAA 57.795 33.333 0.00 0.00 45.49 1.52
313 314 7.817962 GGCATAACTAAGTCTCAGTTGACTAAA 59.182 37.037 0.00 0.00 45.49 1.85
314 315 7.178628 AGGCATAACTAAGTCTCAGTTGACTAA 59.821 37.037 0.00 0.00 45.49 2.24
315 316 6.663953 AGGCATAACTAAGTCTCAGTTGACTA 59.336 38.462 0.00 0.00 45.49 2.59
317 318 5.725362 AGGCATAACTAAGTCTCAGTTGAC 58.275 41.667 0.00 0.00 36.88 3.18
318 319 6.014584 TCAAGGCATAACTAAGTCTCAGTTGA 60.015 38.462 0.00 0.00 36.88 3.18
319 320 6.166279 TCAAGGCATAACTAAGTCTCAGTTG 58.834 40.000 0.00 0.00 36.88 3.16
320 321 6.360370 TCAAGGCATAACTAAGTCTCAGTT 57.640 37.500 0.00 0.00 39.50 3.16
321 322 6.552445 ATCAAGGCATAACTAAGTCTCAGT 57.448 37.500 0.00 0.00 0.00 3.41
322 323 5.689514 CGATCAAGGCATAACTAAGTCTCAG 59.310 44.000 0.00 0.00 0.00 3.35
323 324 5.359860 TCGATCAAGGCATAACTAAGTCTCA 59.640 40.000 0.00 0.00 0.00 3.27
324 325 5.833082 TCGATCAAGGCATAACTAAGTCTC 58.167 41.667 0.00 0.00 0.00 3.36
325 326 5.854010 TCGATCAAGGCATAACTAAGTCT 57.146 39.130 0.00 0.00 0.00 3.24
326 327 5.107298 GCATCGATCAAGGCATAACTAAGTC 60.107 44.000 0.00 0.00 0.00 3.01
327 328 4.752101 GCATCGATCAAGGCATAACTAAGT 59.248 41.667 0.00 0.00 0.00 2.24
328 329 4.993584 AGCATCGATCAAGGCATAACTAAG 59.006 41.667 8.02 0.00 0.00 2.18
329 330 4.960938 AGCATCGATCAAGGCATAACTAA 58.039 39.130 8.02 0.00 0.00 2.24
330 331 4.607293 AGCATCGATCAAGGCATAACTA 57.393 40.909 8.02 0.00 0.00 2.24
331 332 3.482156 AGCATCGATCAAGGCATAACT 57.518 42.857 8.02 0.00 0.00 2.24
332 333 7.278646 TGAATATAGCATCGATCAAGGCATAAC 59.721 37.037 8.02 4.58 0.00 1.89
333 334 7.330262 TGAATATAGCATCGATCAAGGCATAA 58.670 34.615 8.02 0.00 0.00 1.90
334 335 6.877236 TGAATATAGCATCGATCAAGGCATA 58.123 36.000 8.02 4.80 0.00 3.14
335 336 5.737860 TGAATATAGCATCGATCAAGGCAT 58.262 37.500 8.02 3.07 0.00 4.40
336 337 5.151297 TGAATATAGCATCGATCAAGGCA 57.849 39.130 8.02 0.00 0.00 4.75
337 338 5.007430 CCATGAATATAGCATCGATCAAGGC 59.993 44.000 0.00 0.00 0.00 4.35
338 339 5.526479 CCCATGAATATAGCATCGATCAAGG 59.474 44.000 0.00 0.00 0.00 3.61
339 340 6.343703 TCCCATGAATATAGCATCGATCAAG 58.656 40.000 0.00 0.00 0.00 3.02
340 341 6.298441 TCCCATGAATATAGCATCGATCAA 57.702 37.500 0.00 0.00 0.00 2.57
341 342 5.937975 TCCCATGAATATAGCATCGATCA 57.062 39.130 0.00 0.00 0.00 2.92
342 343 6.286758 ACATCCCATGAATATAGCATCGATC 58.713 40.000 0.00 0.00 0.00 3.69
343 344 6.244552 ACATCCCATGAATATAGCATCGAT 57.755 37.500 0.00 0.00 0.00 3.59
344 345 5.682234 ACATCCCATGAATATAGCATCGA 57.318 39.130 0.00 0.00 0.00 3.59
345 346 8.442632 AATAACATCCCATGAATATAGCATCG 57.557 34.615 0.00 0.00 0.00 3.84
354 355 8.796475 CGGATCTTAAAATAACATCCCATGAAT 58.204 33.333 0.00 0.00 30.84 2.57
355 356 7.777910 ACGGATCTTAAAATAACATCCCATGAA 59.222 33.333 0.00 0.00 30.84 2.57
356 357 7.228507 CACGGATCTTAAAATAACATCCCATGA 59.771 37.037 0.00 0.00 30.84 3.07
357 358 7.013274 ACACGGATCTTAAAATAACATCCCATG 59.987 37.037 0.00 0.00 30.84 3.66
358 359 7.060421 ACACGGATCTTAAAATAACATCCCAT 58.940 34.615 0.00 0.00 30.84 4.00
359 360 6.419791 ACACGGATCTTAAAATAACATCCCA 58.580 36.000 0.00 0.00 30.84 4.37
360 361 6.937436 ACACGGATCTTAAAATAACATCCC 57.063 37.500 0.00 0.00 30.84 3.85
393 394 8.188139 CGGTATAACATGCAGGAAAAATAACTT 58.812 33.333 4.84 0.00 0.00 2.66
394 395 7.681065 GCGGTATAACATGCAGGAAAAATAACT 60.681 37.037 4.84 0.00 0.00 2.24
395 396 6.416750 GCGGTATAACATGCAGGAAAAATAAC 59.583 38.462 4.84 0.00 0.00 1.89
396 397 6.095580 TGCGGTATAACATGCAGGAAAAATAA 59.904 34.615 4.84 0.00 32.73 1.40
397 398 5.590663 TGCGGTATAACATGCAGGAAAAATA 59.409 36.000 4.84 0.00 32.73 1.40
398 399 4.400884 TGCGGTATAACATGCAGGAAAAAT 59.599 37.500 4.84 0.00 32.73 1.82
399 400 3.759086 TGCGGTATAACATGCAGGAAAAA 59.241 39.130 4.84 0.00 32.73 1.94
400 401 3.127895 GTGCGGTATAACATGCAGGAAAA 59.872 43.478 4.84 0.00 38.14 2.29
401 402 2.680841 GTGCGGTATAACATGCAGGAAA 59.319 45.455 4.84 0.00 38.14 3.13
402 403 2.285083 GTGCGGTATAACATGCAGGAA 58.715 47.619 4.84 0.00 38.14 3.36
403 404 1.474320 GGTGCGGTATAACATGCAGGA 60.474 52.381 4.84 0.00 38.14 3.86
404 405 0.944386 GGTGCGGTATAACATGCAGG 59.056 55.000 0.00 0.00 38.14 4.85
405 406 1.953559 AGGTGCGGTATAACATGCAG 58.046 50.000 0.00 0.00 38.14 4.41
406 407 2.411628 AAGGTGCGGTATAACATGCA 57.588 45.000 0.00 0.00 34.44 3.96
407 408 4.886247 TTAAAGGTGCGGTATAACATGC 57.114 40.909 0.00 0.00 0.00 4.06
408 409 9.959749 ATTATTTTAAAGGTGCGGTATAACATG 57.040 29.630 0.00 0.00 0.00 3.21
410 411 9.790389 CAATTATTTTAAAGGTGCGGTATAACA 57.210 29.630 0.00 0.00 0.00 2.41
411 412 8.748582 GCAATTATTTTAAAGGTGCGGTATAAC 58.251 33.333 0.00 0.00 0.00 1.89
412 413 8.688151 AGCAATTATTTTAAAGGTGCGGTATAA 58.312 29.630 0.00 0.00 35.70 0.98
413 414 8.228035 AGCAATTATTTTAAAGGTGCGGTATA 57.772 30.769 0.00 0.00 35.70 1.47
414 415 7.068226 AGAGCAATTATTTTAAAGGTGCGGTAT 59.932 33.333 0.00 0.00 35.70 2.73
415 416 6.376018 AGAGCAATTATTTTAAAGGTGCGGTA 59.624 34.615 0.00 0.00 35.70 4.02
416 417 5.185056 AGAGCAATTATTTTAAAGGTGCGGT 59.815 36.000 0.00 0.00 35.70 5.68
417 418 5.516339 CAGAGCAATTATTTTAAAGGTGCGG 59.484 40.000 0.00 0.00 35.70 5.69
418 419 6.033831 CACAGAGCAATTATTTTAAAGGTGCG 59.966 38.462 0.00 0.00 35.70 5.34
419 420 6.311200 CCACAGAGCAATTATTTTAAAGGTGC 59.689 38.462 0.00 0.00 0.00 5.01
420 421 6.311200 GCCACAGAGCAATTATTTTAAAGGTG 59.689 38.462 0.00 0.00 0.00 4.00
421 422 6.398095 GCCACAGAGCAATTATTTTAAAGGT 58.602 36.000 0.00 0.00 0.00 3.50
422 423 5.516339 CGCCACAGAGCAATTATTTTAAAGG 59.484 40.000 0.00 0.00 0.00 3.11
431 432 0.323302 TGTCCGCCACAGAGCAATTA 59.677 50.000 0.00 0.00 0.00 1.40
434 435 0.955428 GATTGTCCGCCACAGAGCAA 60.955 55.000 0.00 0.00 35.97 3.91
454 455 5.388061 CGTGTGGTACTAGACGTTCAATTTG 60.388 44.000 18.89 0.00 0.00 2.32
461 462 1.808945 CTCCGTGTGGTACTAGACGTT 59.191 52.381 23.74 0.00 36.30 3.99
476 477 2.023414 TTCGTCCTTGTGTGCTCCGT 62.023 55.000 0.00 0.00 0.00 4.69
539 540 2.502130 TGGGGTGTTTCCAAAGTTTTCC 59.498 45.455 0.00 0.00 38.11 3.13
570 571 5.764686 AAGAAATATCTATGCATGTCGGCAA 59.235 36.000 10.16 0.00 40.49 4.52
633 634 0.109723 CCTGTCCTTTTTGTCCCCGA 59.890 55.000 0.00 0.00 0.00 5.14
635 636 0.469144 TGCCTGTCCTTTTTGTCCCC 60.469 55.000 0.00 0.00 0.00 4.81
718 720 1.592081 GCGCTGTAGCTCTGAAGATTG 59.408 52.381 0.00 0.00 39.32 2.67
737 739 4.012895 CGCGTGCGAATATGGGGC 62.013 66.667 8.89 0.00 42.83 5.80
967 997 0.383949 CACTCGAGGCCTTCTAGCTC 59.616 60.000 18.41 0.00 0.00 4.09
971 1001 1.819288 CACTTCACTCGAGGCCTTCTA 59.181 52.381 18.41 0.00 0.00 2.10
1094 1124 3.656559 GAAGCCCGTACACAGTAGAAAA 58.343 45.455 0.00 0.00 0.00 2.29
1132 1168 5.730296 AATAACCAGATCAGATACGGGAG 57.270 43.478 0.00 0.00 0.00 4.30
1393 1445 1.564348 ACAATACCGAGCTCCCCAAAT 59.436 47.619 8.47 0.00 0.00 2.32
1397 1449 1.067582 CGACAATACCGAGCTCCCC 59.932 63.158 8.47 0.00 0.00 4.81
1398 1450 0.674534 ATCGACAATACCGAGCTCCC 59.325 55.000 8.47 0.00 39.55 4.30
1402 1454 1.067212 ACAGGATCGACAATACCGAGC 59.933 52.381 0.00 0.00 41.14 5.03
1414 1466 1.133216 ACTCGTGACATCACAGGATCG 59.867 52.381 12.32 0.00 46.75 3.69
1447 1499 1.664873 GACGAATGCCCTAAAGTCCC 58.335 55.000 0.00 0.00 0.00 4.46
1450 1502 0.743345 GCCGACGAATGCCCTAAAGT 60.743 55.000 0.00 0.00 0.00 2.66
1500 1552 8.970638 CTTCCGAAAGATCATTTGGACATCCAA 61.971 40.741 17.48 9.35 43.38 3.53
1501 1553 3.947196 CCGAAAGATCATTTGGACATCCA 59.053 43.478 10.95 0.00 45.94 3.41
1502 1554 4.199310 TCCGAAAGATCATTTGGACATCC 58.801 43.478 14.46 0.00 37.84 3.51
1503 1555 5.731686 GCTTCCGAAAGATCATTTGGACATC 60.732 44.000 17.48 7.56 41.57 3.06
1504 1556 4.096984 GCTTCCGAAAGATCATTTGGACAT 59.903 41.667 17.48 0.00 41.57 3.06
1505 1557 3.440173 GCTTCCGAAAGATCATTTGGACA 59.560 43.478 17.48 9.42 41.57 4.02
1506 1558 3.440173 TGCTTCCGAAAGATCATTTGGAC 59.560 43.478 17.48 9.24 41.57 4.02
1507 1559 3.684908 TGCTTCCGAAAGATCATTTGGA 58.315 40.909 14.46 14.46 40.42 3.53
1508 1560 4.439305 TTGCTTCCGAAAGATCATTTGG 57.561 40.909 10.26 10.26 34.14 3.28
1509 1561 4.731961 CGATTGCTTCCGAAAGATCATTTG 59.268 41.667 0.00 0.00 34.14 2.32
1510 1562 4.635765 TCGATTGCTTCCGAAAGATCATTT 59.364 37.500 0.00 0.00 34.14 2.32
1511 1563 4.191544 TCGATTGCTTCCGAAAGATCATT 58.808 39.130 0.00 0.00 34.14 2.57
1512 1564 3.797039 TCGATTGCTTCCGAAAGATCAT 58.203 40.909 0.00 0.00 34.14 2.45
1513 1565 3.245518 TCGATTGCTTCCGAAAGATCA 57.754 42.857 0.00 0.00 34.14 2.92
1514 1566 3.619038 ACTTCGATTGCTTCCGAAAGATC 59.381 43.478 0.00 0.00 43.05 2.75
1515 1567 3.600388 ACTTCGATTGCTTCCGAAAGAT 58.400 40.909 0.00 0.00 43.05 2.40
1516 1568 3.040147 ACTTCGATTGCTTCCGAAAGA 57.960 42.857 0.00 0.00 43.05 2.52
1517 1569 3.482786 CAACTTCGATTGCTTCCGAAAG 58.517 45.455 0.00 0.00 43.05 2.62
1518 1570 2.225491 CCAACTTCGATTGCTTCCGAAA 59.775 45.455 0.00 0.00 43.05 3.46
1519 1571 1.804151 CCAACTTCGATTGCTTCCGAA 59.196 47.619 0.00 0.00 41.71 4.30
1520 1572 1.001520 TCCAACTTCGATTGCTTCCGA 59.998 47.619 0.00 0.00 0.00 4.55
1521 1573 1.394917 CTCCAACTTCGATTGCTTCCG 59.605 52.381 0.00 0.00 0.00 4.30
1522 1574 1.740025 CCTCCAACTTCGATTGCTTCC 59.260 52.381 0.00 0.00 0.00 3.46
1523 1575 2.416893 GACCTCCAACTTCGATTGCTTC 59.583 50.000 0.00 0.00 0.00 3.86
1524 1576 2.224523 TGACCTCCAACTTCGATTGCTT 60.225 45.455 0.00 0.00 0.00 3.91
1525 1577 1.347707 TGACCTCCAACTTCGATTGCT 59.652 47.619 0.00 0.00 0.00 3.91
1526 1578 1.734465 CTGACCTCCAACTTCGATTGC 59.266 52.381 0.00 0.00 0.00 3.56
1527 1579 3.045601 ACTGACCTCCAACTTCGATTG 57.954 47.619 0.00 0.00 0.00 2.67
1528 1580 5.178797 CAATACTGACCTCCAACTTCGATT 58.821 41.667 0.00 0.00 0.00 3.34
1529 1581 4.223032 ACAATACTGACCTCCAACTTCGAT 59.777 41.667 0.00 0.00 0.00 3.59
1530 1582 3.576982 ACAATACTGACCTCCAACTTCGA 59.423 43.478 0.00 0.00 0.00 3.71
1531 1583 3.926616 ACAATACTGACCTCCAACTTCG 58.073 45.455 0.00 0.00 0.00 3.79
1532 1584 6.635030 AAAACAATACTGACCTCCAACTTC 57.365 37.500 0.00 0.00 0.00 3.01
1555 1607 5.728344 GCTTGCGTCTGTACTGTGTTAAAAA 60.728 40.000 0.00 0.00 0.00 1.94
1556 1608 4.260456 GCTTGCGTCTGTACTGTGTTAAAA 60.260 41.667 0.00 0.00 0.00 1.52
1557 1609 3.246699 GCTTGCGTCTGTACTGTGTTAAA 59.753 43.478 0.00 0.00 0.00 1.52
1558 1610 2.798283 GCTTGCGTCTGTACTGTGTTAA 59.202 45.455 0.00 0.00 0.00 2.01
1559 1611 2.400399 GCTTGCGTCTGTACTGTGTTA 58.600 47.619 0.00 0.00 0.00 2.41
1560 1612 1.217882 GCTTGCGTCTGTACTGTGTT 58.782 50.000 0.00 0.00 0.00 3.32
1561 1613 0.939577 CGCTTGCGTCTGTACTGTGT 60.940 55.000 6.86 0.00 0.00 3.72
1562 1614 1.775344 CGCTTGCGTCTGTACTGTG 59.225 57.895 6.86 0.00 0.00 3.66
1563 1615 2.022129 GCGCTTGCGTCTGTACTGT 61.022 57.895 16.38 0.00 0.00 3.55
1564 1616 1.678269 GAGCGCTTGCGTCTGTACTG 61.678 60.000 13.26 0.00 45.69 2.74
1565 1617 1.444553 GAGCGCTTGCGTCTGTACT 60.445 57.895 13.26 3.73 45.69 2.73
1566 1618 2.778997 CGAGCGCTTGCGTCTGTAC 61.779 63.158 13.26 0.00 45.69 2.90
1567 1619 1.914531 TACGAGCGCTTGCGTCTGTA 61.915 55.000 24.96 7.49 45.69 2.74
1568 1620 2.543687 ATACGAGCGCTTGCGTCTGT 62.544 55.000 24.96 11.65 45.69 3.41
1569 1621 0.591488 TATACGAGCGCTTGCGTCTG 60.591 55.000 24.96 6.42 45.69 3.51
1570 1622 0.099968 TTATACGAGCGCTTGCGTCT 59.900 50.000 24.96 18.45 45.69 4.18
1571 1623 0.918619 TTTATACGAGCGCTTGCGTC 59.081 50.000 24.96 5.46 45.69 5.19
1572 1624 1.567504 ATTTATACGAGCGCTTGCGT 58.432 45.000 24.68 24.68 45.69 5.24
1573 1625 3.763756 TTATTTATACGAGCGCTTGCG 57.236 42.857 24.80 20.18 45.69 4.85
1574 1626 5.675970 TCATTTATTTATACGAGCGCTTGC 58.324 37.500 24.80 5.16 39.58 4.01
1575 1627 8.621487 CAATTCATTTATTTATACGAGCGCTTG 58.379 33.333 23.34 23.34 0.00 4.01
1576 1628 8.556194 TCAATTCATTTATTTATACGAGCGCTT 58.444 29.630 13.26 0.00 0.00 4.68
1577 1629 8.083462 TCAATTCATTTATTTATACGAGCGCT 57.917 30.769 11.27 11.27 0.00 5.92
1578 1630 8.618952 GTTCAATTCATTTATTTATACGAGCGC 58.381 33.333 0.00 0.00 0.00 5.92
1579 1631 9.644993 TGTTCAATTCATTTATTTATACGAGCG 57.355 29.630 0.00 0.00 0.00 5.03
1619 1671 8.473219 GGAGAAATGAGCTTCATCCTTAAAAAT 58.527 33.333 0.00 0.00 35.76 1.82
1624 1676 4.723789 AGGGAGAAATGAGCTTCATCCTTA 59.276 41.667 0.00 0.00 35.76 2.69
1629 1681 2.503356 ACGAGGGAGAAATGAGCTTCAT 59.497 45.455 0.00 0.00 39.09 2.57
1707 1759 2.127708 AGATTTGGGGGAGCTCGTATT 58.872 47.619 7.83 0.00 0.00 1.89
1708 1760 1.807814 AGATTTGGGGGAGCTCGTAT 58.192 50.000 7.83 0.00 0.00 3.06
1742 1794 9.265901 CGGATAGTCTGAACAATCATATTTCTT 57.734 33.333 0.00 0.00 34.37 2.52
1772 1824 3.495193 GACCGCGCGTCATAGATAATAA 58.505 45.455 29.95 0.00 41.54 1.40
1805 1857 1.654023 GGTGCGTCATAAGGTTGGCC 61.654 60.000 0.00 0.00 0.00 5.36
1814 1866 2.799126 AAATGGAAGGGTGCGTCATA 57.201 45.000 0.00 0.00 0.00 2.15
1913 1965 1.289160 AGCTGAGGTGGGCTTCATTA 58.711 50.000 0.00 0.00 34.96 1.90
1919 1971 2.753029 GTGAAGCTGAGGTGGGCT 59.247 61.111 0.00 0.00 40.85 5.19
1935 1987 1.356124 AAGAGAGAGTGTGCCATGGT 58.644 50.000 14.67 0.00 0.00 3.55
1995 2047 1.223487 GGATTAGGGCTGTTGGCGA 59.777 57.895 0.00 0.00 42.94 5.54
2023 2075 2.158900 GGTGGTGGATCGATCTGAACAT 60.159 50.000 23.96 0.00 0.00 2.71
2030 2082 3.157881 TGATAGAGGTGGTGGATCGATC 58.842 50.000 17.36 17.36 0.00 3.69
2071 2123 2.172483 GAGAGTGTCATGGGTGGCGT 62.172 60.000 0.00 0.00 30.74 5.68
2089 2141 2.840038 TGGATCTGCCTTCTTAGCTTGA 59.160 45.455 0.00 0.00 37.63 3.02
2177 2229 6.554419 CATGTCCAACAACGAACATCATATT 58.446 36.000 0.00 0.00 30.16 1.28
2187 2239 1.333308 CAGTTGCATGTCCAACAACGA 59.667 47.619 15.69 0.00 46.41 3.85
2197 2249 4.194640 GAGGTGACATATCAGTTGCATGT 58.805 43.478 0.00 0.00 34.75 3.21
2232 2284 6.214191 TGCATTGGTTTGTTACTTCAAGAA 57.786 33.333 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.