>input_sequence_85691
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---------------------------------------------------------------------ATGGGCTCGGC
AACAGTCCTGGAGGTGATCCTCGCCATCATCCTGCCTCCCGTCGGCGTCTTCCTGCGCTACAAACTCGGCGTAAGTGGTT
ACTTTTTCTACTGTGTACG-----GGCTTCGCTGTGCCTTATTT-TACTCCCGTATCTGATCTGGTTATTACTGGTGTGG
ATGTGTCGATTCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCATACTGGGGTACATACCGGGGATCATCTACGCGGTG
TACGTGCTGGTAGTTTAA--------------------------------------------------------------
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>chr4A_1_TraesCS4A01G107100
TCTCCTGAAGACATGTGAAGTAGGAGGAAGGCTCATCTTGGAGACCATGACGCGCGCGTCTATCACTTGTCCACAACCTA
TACTGCACCATGAGCCAGGCAAAGATCTTGCAGCGTAATTGTTGCCAAATGCCCTACTCCGTCGATGAAGGGGTGCGGCT
CCTGCTTGTGTTGGCCGATCCAACGACCGCGAGGGGAAGGATCCGGCGGCTCGCAACCCGACTGGTTTTTCAGGAAATCA
GCCTGTTGATCCATAGCAGCTGTCATTTCAAATAGTTTTATAGCTTTTTTTTAGAAAAACAGTCTTGCTAAATTTTAGTC
AACTGAGACTTAGTTATGCCTTGATCGATGCTATATTCATGGGATGTTATTTTAAGATCCGTGTAAAAGAAATAAGTTAT
TTTTCCTGCATGTTATACCGCACCTTTAAAATAATTGCTCTGTGGCGGACAATCCAAATTGAACGTCTAGTACCACACGG
AGCACACAAGGACGAACCCACCACAGCTGTGGTGGCTGCAAAAGCAACCGCTCCAGCTAGGAAAACTTTGGAAACACCCC
AAACGGGGCCTTGCCGACATGCATAGATATTTCTTTTTCTCACGGCAGTGCCGACATGCATGGATACAACGAGTCGGGGA
CAAAAAGGACAGGCACAGCGCATCGGACAAGAACACGCCACCAGCAAACAGAGA-TTTTTAAGAGGGAGGAGGTTAATCC
AATCTTCAGAGCTACAGCGCCCCATATTCGCACGCGTCTC---AAGAAGATGCTACGTGGAGTGCAGGTGGCCAAACC--
-ACCTGCCAGCCCGGGGACACGTACACCACCTCCACATCAAAGTATCAAACCACACCAGT---TACTAAAAACACCC-AA
GTCTTGTCTATATAAATGGACGTGTACTACATGATCTGGCAATCCAAATCATCCA--------ATCCAGTCGCCTCTTTC
AGAAGGGAAAGCAG----------AGAGAAAGAAAGGAGCTAGAAGGCCTCGAGTGAAGTGAGCAAGCCATGGGCTCGGC
AACAGTCCTGGAGGTGATCCTCGCCATCATCCTGCCTCCCGTCGGCGTCTTCCTGCGCTACAAACTCGGCGTAAGTGGTT
ACTTTTTCTACTGTGTACG-----GGCTTCGCTGTGCCTTATTT-TACTCCCGTATCTGATCTGGTTATTACTGGTGTGG
ATGTGTCGATTCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCATACTGGGGTACATACCGGGGATCATCTACGCGGTG
TACGTGCTGGTAGTTTAAGCAA-CAGCCTCTGCTGCAGGGTCCAGGCTTGGACGAGCGAGTCGCTGTGCAAGAGCAACTG
ATGCTGTCTGTGTTAAGATAGCATGTCT--------------TTGTGTATGCTTGTATGTATTGAATATTGCGGATTTCA
TTT-ATTTGGGGAGCTCGGTATTGTCGATCCTGTGATGTCACGAGTGTACGTAGCTCGGGGACTTTAGGGCATTCGTCGG
CTGTAGTGTTTGTGATCTTAAATTTAAAGTATTGGATGTCCAAATGATCTTTCGGAAGCAATCGAAGTTGGAGGTCAGTA
TTGTTTTTTTTAACACAGTACAGACGCAAGCGCTCGTATAAATAAATGAATTGAACAAATGATTAAGGTCATTTTTAAGG
ATGAAGCTCATTTCTCCCTCGTACGTTTGTGTTTGGATATGAAATCCAATCGGCTCCTCAAAATTCAATTGTTTCGACAA
TACGAGCTCCCCCAAATCTAACTCATATGTGAGAAGAAATATGATTGTTCAGACTATCCGTCATTATTATCTATGACGCG
CGGTCCAAACACAAAAGGCCAACCTTATGACGCACCCTTCCATTTTCCTGCCGGACCGTCCCCTTCCAGCTTGGTTTCTC
AACGTAGTGGGCCATTTCTCGTTGGAGCCCTCTCCTTTAAAATTTAATGAAGCCCACCTCAGCTTCACCATGGCACACTC
TCTCTTTCACACCGTACTTCCCCATGAATCGCCAAGCAGGAGTCCTTCGCCAACAGCCCTAATCCCCTCTCCACATGTTC
AGATCGATCCACCACCTCTATCAAGGGAGGGTGGGTGAGCCTACGCCACCCATGACACTCTCAAGCTAAGAAGGCAGATC
CAATGTCTTCTTAGCCATTGACACATTATAACATACAATTAAATGTCGCGTATTACCAAAAAATAAAAAATATGATGTTC
GTTGTTGGACATGCAACTGATATGTCACCTCGTCGGTTATTAATTCTTGAAGTAACAA--ACCAATGCATTTACTC
>chr4D_418
CCACAG--------------------------------------------------------------------------
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-----------------------CTTTAAAAAAGCTGCTCTGTGGCGGACAATCAAAATTGGACGTCTAGTACCACGCGG
AGCACACAAGGACGAACACA----------GGTGGCTGCAAAAGCAACCGTTCCAGCTATG-AAACTTTGGAAACACCCC
AAACGGGTCCGTGCCGACATGCATAGATATTTCATTTTCTGACGGGAGTGCCGACATGCATGGATACAACGAGGCAGGGA
CAAAAAGAG-AGGCACAGCGCATCGGACAAGAACACGCCACCAGCAAACAGAGATTTTTTAAGTGGGAGGAGGTTAATCT
AATCTCCAGAGCTCCAGTACCCCATATTCGCACGCGTCTCGAGAAGAAGATGCTACGTGGAGTGCAGGTGGCCAAACTAG
TACCTGCCAGCCCGGGGACACGTACACCACCTCCACATCAAAGTATCAAACCACACCAGT---TACTAAAAACACCCGAA
GTCTTGTCTATATAAATGGACGTGTACTACATGATCTGGCAATCCAAATCATCCA--------ATCCAGTCGCCTCTTTC
AGAAGGGAAAGCAG----------AGAGAAAGAAAGAAGCCAGAAAGCCTCGAGTGAAGTGAGCAAGCCATGGGCTCGGC
AACAGTCCTGGAGGTGATCCTCGCCATCATCCTGCCTCCCGTCGGCGTCTTCCTGCGCTACAAACTCGGCGTAAGTGGCT
ACTCCTTCTAATTTGTACTACTCCGGTTTCGATGTGCCTTGTTT-TAGTCTGGTATCTGATCTAGTTACT---GGTGTGG
TTGTA-----TCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCATACTGGGGTACATACCGGGGATCATCTACGCGGTG
TATGTGCTGGTAGTTTAAGCAA-CAGCCTCTGCTGCAGGGTCCGGGCTTGGACGAGCGAGTCGCTGTGCACGAGCAACTG
ATGATGTCTGTGTTAAGATAGCATGTCT--------------TTGTGTAAGCTTGTATGTATTGAATATTGCGGATTTCA
ATT-TTTTTTGAAACTTGGTATTGT--------TGATGTCACGAGTGTACGTAGCTCGAGGGCTTTAGAGCATTCGTCGG
CTCCAGTGTTTGTGATCTTAAATTTAAAGTA-------------------------------------------------
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>chr4B_425
TTTAA---------------------------------------------------------------------------
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------------------------------AAAACTGCTCTGTGGCGGACAATCAAAATTGGACGTCTAGTACCACGCGG
AGCACACAAGGACGAACCCACCACAGCTGTGGTGGCTGCAAAAGCAACCGCTCCAGCTAAGAAAACTTTGGAAACACCCC
AAACGGTGCCGTGCCGACATGCATAGATATTT-TTTTTCTGACGGGAGTGCCGACATGCATGGATACAACGAGCCAGGTC
CAAAAAGGACAGGCACAGCGCATCGGACAAGAACACGCCACCAGCAAACAGAGA-TTTTTAAGAGGGAGGAGGTTAATCT
AATCTTCAGAGCTACAGCACCCCATATTCGCACG-GTCTCCAGAAGAAGATGCTACGTGGAGTGCAGGTGGCCAAATC--
-ACCTGCCAGCCCGGGGACACGTACACCACCTCCACATCAAAGTATCAAACCACACCAGT---TACTAAAAACACCCGAA
GTCTTGTCTATATAAATGGACGTGTACTACATGATCTGGCAATCCAAATCATCCA--------ATCCAGTCGCCTCTTTC
AGAAGGGAAAGC--------------AGAGAGAAAGAAAGGAGAGGGCCTCGAGTGAAGTGAGCAAGCCATGGGCTCGGC
AACAGTCCTGGAGGTGATCCTCGCCATCATCCTGCCTCCCGTCGGCGTCTTCCTGCGCTACAAACTCGGCGTAAGTGGTT
ACTCTTTCTACTGTGTACG-----GGCTTCGCTGTGCCTTATTT-TAGTCCCGTATCTGATCTGGTTATTACTGGTGTCG
ATGCGTCGATTCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCATACTGGGGTACATACCGGGGATCATCTACGCGGTG
TACGTGCTGGTAGTTTAAGCAAACAGCCTCTGCTGCAGGATCCAGGCTTGGACGAGCGAGTCGCTGTGCACGAGCAACTG
ATGCTGTCTGTGTTAAGATAGCATGTCT--------------TTGTGTAAGCTTGTATGTATTGAATATTGTGGATTTCA
TTTTTTTTTTGGAACTTGGTATTGTTGATCCTGTGATGTCACGAGTGTACGTAGCTCGAGGGCTTTAGGGCATTCGTCGG
CTCCAGTGTTTGTGATCTTAAATTTAAAGTA-------------------------------------------------
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>chr4D_760
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-------------------------------------------AAAAAGTTGCTACGCGGAGTGCAGGTGGCCAAGCC--
-ACGTGCCAGGACAGGGACACATACACCACCTACAAAGGCCAAAG-CAGACCAGAACAGT---TACTAAAAACACCCGAA
GTCTTGTCTATATAAACGGACGTG---TACACGATCTTGCAATCCAAATCAACCGCCCACCCCATCCAGGCGCTTCTCGC
TTTCAGAAAG-----AGGAAGGACAGAGAAAGAAAGAAGCCAGAAAGCCTCGAGTGAAGTGAGC----CATGGCCTCAGC
AACGTTCATAGAGGTGATCCTCGCCATCATCCTGCCTCCGGTCGGCGTCTTCCTGCGCTACGGCCTCGCCGTAAGTGGCT
ACTCTTTATAATTTGTACCT-----GTTTCGCCGTGCCTTGTTTGTAGTCTCCTATCTGATCTGGTTATTACTGCTGTGG
ATATGTGGATTCAGGTGGAGTTCTGGATCTGCCTCTTGCTGACCCTACTGGGGTACATACCGGGGATCATCTACGCGGTG
TATGTGCTGGTGGCTTAAGCAA-CGGCCTCTGCTGCAGGGTCCAGGCTTGGACGAGCGAGTCGCTCTGCAAGAGCAACAG
GGGCTGTCT-----------------------------------------------------------------------
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>chr4A_775
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----------------------------------------------------------GGACTGCAGGTGGCCAAGCC--
-GCGTGCTGGGGCAGGGACACGTACGCCACCTCCAAAGCAAA--------CCAGAACAGTTACTACTAAAAACAACTGAA
GTCTTGTCTATATAAACGGACGTG---TACACGATCTTGCAATCCAAATCAACCACCCACCCCATCCAGGCGCTTCTCGC
TTTCGGAAAAAGGAAAGGAAGAACAGAGAAAGAAAGAAGCCAGAAAGCCTCGAGTGAAGTGAGC----CATGGCCTCAGC
AACGTTCATAGAGGTGATCCTCGCCATCATCCTGCCTCCGGTCGGCGTCTTCCTGCGCTACGGCCTCGCCGTAAGTGGCT
ACTCTTTCTAATTCGTACG-----GGTTTCGCCGTGCCTTGTTTGCAGTCTCCTATCTGATCTGGTTATTACTGCTGCGG
ATGTGTCGATTCAGGTGGAGTTCTGGATCTGTCTCTTGCTGACCTTACTGGGGTACATACCGGGGATCATCTACGCGGTG
TATGTGCTGGTGGCTTAAGCAA-CGGCCTCTGCTGCAGGGTCCAGCCCTGGACGCGCGGGCGGCTGTGCAAGAGCAACAG
ATGCTGT----GTTCAGAGACCATGTGTTGATCAGTTCGTGCTTGTTTATGTATGTATTGATTGAGTATTGTGGATTT--
TTCTTTCTTTGGGACTCGGTATTGTTGA-CCTGTGATGTGATGAGTGT--------------------------------
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>chr4D_1591
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-----------------------------------------ATAAATGAATTGAACAAATGATTAAGGTCGTTTTCAAGG
GTGAAGCTCATTTCTCCCTCGTACGTTTGTGTCTGGATATGAAATCCAATCGGCTCCCCAAAATTCAATTGTTTCGACGG
TACGAGCT-CCCCAAATCTAACCCATATGTGGGGAGAAATATGATTGTCCAGACTATCCGTCAATATTATCTATGACGCG
CGGTCCGAACACAAAAAGCCAACTTCATGACGCACCCTGACATTTTCCTGCCGGACTGTCCCCTTCCAGCTTGGTTTCTC
AACACAGTGGGCCATTTCTCACTGGAGCCCTCTCCTTTAAAATTCAATGACGCCCACCTCAGCTTCGCCATGGCACACTC
TCT--TTCACACCGTACTTCCCCATGAATCGCCAAGCAGGAGTCCTCCGCCAACAGCCTTAATCCCCTCTCCACGTGTTC
ATATCGATCCACCACCTATATCAAGGGAGGGTGGGTGAGCCTGCGCCACCCATGACACTCCCAAGCTAAGAAGGCAGATC
CAATGTCTTCTTAGCCATTGACACATTGTAACATACAATTGAATGTCGCGTATTACTAAAAAATAAAA-ATATGATGTCC
GTTGTTGGGCATGCAACTGATATGTCACCTCGTCGGTTATTAACTCTTGAAGTAACAACCA---ATGCATTTACTC
>chr5D_1591
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-----------------------------------------ATAAATAAATTGAACAAATGATTAAGGTCGTTTTCAAGG
GTGAAGCTCATTTCTTCCTCGTACGTTTGTGTCTGGATATCAAATCCAATCGGCTCCCCAAAATTCAATTGTTTCAACGG
TACGAGCTCCCCCAAATCTAACCCATATGTGGGGAGAAATATGATTGTCCAGACTATCCGTCAATATTATCTACGACGCG
CGGTCCGAACACAAAAAGCCAACCTCATGACGCACCCTTCCATTTTCCTGCCGGACCGTCGCCTTCCAGCTTGGTTTCTC
AACGTAGTGGGCCATTTCTCACTGGAGCCCTCTCCTTTAAAATTCAATGACGCCCACCTCAGCTTCGCCATGGCACACTC
TCTCTTTCACGCCGTACTTCCCAATGAATCGCCAAGCAGGAGTCCTCCGCCAACAACCCTAATCCCCTCTCCACGTGTTC
ATATCGATCCACCACCTCTATCAAGGGAGGGTGGGTGAGCCTGCGCCACCCATGACACTCCCAAGCTAAGAAGGCAGATC
CAATGTCTTCTTAGCCATTGACACATTGTAACATACAATTGAATGTCGCGTATTACCAAAAAACAAAA-ATATGATGTCC
GTTGTTGGGCATGCAACTGATATGTCACCTCGTCGGTTATTAACTCTTGAAGTAGCAA--A---ATGCATTTACTC
>SNPs
----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS--------S--S-------------------S------S--------------S---
-----------------------------------------------------------S--------------------
----------S-----------------------------S----S---------------------------S-S----
-------------------------------------------------------------------------------S
------------------S-------------------------------------------------------------
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------------------------------------S---S---------------------------------------
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---S-------------------------------------------S--------------------------------
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----S---SS---S-----------S--------------------------------S--S------------------
--SS---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------------S----S----
S-------------------------------S------------------------S--------------------SS
----------------------S--------S-S--------------S--------------S----------------
------S---------S--------S------------------------------------------------------
--------------------SS----------------------S-----S---------------S-------------
----------------------------------------------S---------------------------S-----
-S----------------------------------------S-----------------S-------------------
---------------------------S------------S---------------------------S---------S-
--------S----------------------------------S-----------------SSS------------
>forward_150
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--------------------------------------------------GCCCTACTCCGTCGATGAAG----------
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>reverse_1622
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---------------------AGACGCAAGCGCTCGTATAA---------------------------------------
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