Multiple sequence alignment - TraesCS4A01G106300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G106300 chr4A 100.000 4610 0 0 1 4610 120568785 120573394 0.000000e+00 8514.0
1 TraesCS4A01G106300 chr4B 91.550 2284 128 29 1632 3872 426774339 426772078 0.000000e+00 3088.0
2 TraesCS4A01G106300 chr4B 93.129 1237 65 12 408 1638 426775820 426774598 0.000000e+00 1796.0
3 TraesCS4A01G106300 chr4B 87.097 248 17 2 77 309 426775873 426776120 2.730000e-67 267.0
4 TraesCS4A01G106300 chr4D 89.893 1583 109 25 2836 4376 344862991 344864564 0.000000e+00 1989.0
5 TraesCS4A01G106300 chr4D 90.850 1377 84 22 437 1794 344860750 344862103 0.000000e+00 1807.0
6 TraesCS4A01G106300 chr4D 91.005 945 41 9 1817 2749 344862096 344863008 0.000000e+00 1234.0
7 TraesCS4A01G106300 chr4D 94.972 179 9 0 77 255 344860414 344860592 9.770000e-72 281.0
8 TraesCS4A01G106300 chr4D 91.195 159 8 2 4375 4533 344864707 344864859 1.300000e-50 211.0
9 TraesCS4A01G106300 chr4D 94.737 38 2 0 41 78 344860346 344860383 4.980000e-05 60.2
10 TraesCS4A01G106300 chr2B 78.554 401 68 14 996 1391 56517869 56518256 9.900000e-62 248.0
11 TraesCS4A01G106300 chr2A 77.284 405 71 19 996 1391 37085100 37085492 7.770000e-53 219.0
12 TraesCS4A01G106300 chr2D 76.923 403 75 17 996 1391 34228016 34228407 3.610000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G106300 chr4A 120568785 120573394 4609 False 8514.000000 8514 100.000000 1 4610 1 chr4A.!!$F1 4609
1 TraesCS4A01G106300 chr4B 426772078 426775820 3742 True 2442.000000 3088 92.339500 408 3872 2 chr4B.!!$R1 3464
2 TraesCS4A01G106300 chr4D 344860346 344864859 4513 False 930.366667 1989 92.108667 41 4533 6 chr4D.!!$F1 4492

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 387 0.034059 CACCGGCAGTCTTCTGAGTT 59.966 55.0 0.00 0.0 43.76 3.01 F
966 1039 0.035056 CTTCAGTTCCGCCTTCCCAT 60.035 55.0 0.00 0.0 0.00 4.00 F
1789 2148 0.179067 TGGAACACCACGGAGTTGTC 60.179 55.0 3.48 0.0 41.61 3.18 F
2790 3168 0.471191 TATGGAGGCAGCTGATGGTG 59.529 55.0 20.43 0.0 43.87 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1346 1443 0.326618 TGGTGGGGATCTCCTCCTTC 60.327 60.0 28.77 7.72 44.28 3.46 R
1824 2183 0.944311 CTTATTAGGCCGCGCGTCAT 60.944 55.0 29.95 17.78 0.00 3.06 R
3324 3709 0.035056 ATTTCTCCACAAGAGGGCGG 60.035 55.0 0.00 0.00 43.44 6.13 R
4372 4815 0.037590 TTGCGGCCTTTACAGACCAT 59.962 50.0 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 3.401033 TTTTTCAGTGAGATCGGCAGA 57.599 42.857 0.00 0.00 0.00 4.26
33 34 2.370281 TTTCAGTGAGATCGGCAGAC 57.630 50.000 0.00 0.00 0.00 3.51
34 35 1.256812 TTCAGTGAGATCGGCAGACA 58.743 50.000 0.00 0.00 0.00 3.41
35 36 1.256812 TCAGTGAGATCGGCAGACAA 58.743 50.000 0.00 0.00 0.00 3.18
36 37 1.618343 TCAGTGAGATCGGCAGACAAA 59.382 47.619 0.00 0.00 0.00 2.83
37 38 1.998315 CAGTGAGATCGGCAGACAAAG 59.002 52.381 0.00 0.00 0.00 2.77
38 39 1.066573 AGTGAGATCGGCAGACAAAGG 60.067 52.381 0.00 0.00 0.00 3.11
39 40 1.066858 GTGAGATCGGCAGACAAAGGA 60.067 52.381 0.00 0.00 0.00 3.36
47 48 0.315251 GCAGACAAAGGAAGGCCAAC 59.685 55.000 5.01 0.00 36.29 3.77
48 49 0.593128 CAGACAAAGGAAGGCCAACG 59.407 55.000 5.01 0.00 36.29 4.10
94 127 3.881688 GTCTTGTACTGCTATCGTAGGGA 59.118 47.826 0.00 0.00 0.00 4.20
109 142 2.747855 GGAAGGAACCAGCGGCTG 60.748 66.667 22.84 22.84 0.00 4.85
131 164 0.748729 ACGGAGAGACGGGACAGATC 60.749 60.000 0.00 0.00 38.39 2.75
187 220 3.149981 AGAGGCATCATTCATCTGCATG 58.850 45.455 0.00 0.00 37.64 4.06
198 231 1.669265 CATCTGCATGCTATATGGGCG 59.331 52.381 20.33 0.00 0.00 6.13
201 234 2.026915 TCTGCATGCTATATGGGCGAAT 60.027 45.455 20.33 0.00 0.00 3.34
229 262 8.341892 AGATGAAAAATTAGACCAAACCTCTC 57.658 34.615 0.00 0.00 0.00 3.20
231 264 6.059484 TGAAAAATTAGACCAAACCTCTCGT 58.941 36.000 0.00 0.00 0.00 4.18
255 288 1.445582 GAAACGGATCGGTCGCAGT 60.446 57.895 6.36 0.00 0.00 4.40
256 289 0.179156 GAAACGGATCGGTCGCAGTA 60.179 55.000 6.36 0.00 0.00 2.74
257 290 0.457337 AAACGGATCGGTCGCAGTAC 60.457 55.000 6.36 0.00 0.00 2.73
258 291 1.588824 AACGGATCGGTCGCAGTACA 61.589 55.000 6.36 0.00 0.00 2.90
259 292 1.585521 CGGATCGGTCGCAGTACAC 60.586 63.158 0.00 0.00 0.00 2.90
260 293 1.509463 GGATCGGTCGCAGTACACA 59.491 57.895 0.00 0.00 0.00 3.72
261 294 0.102481 GGATCGGTCGCAGTACACAT 59.898 55.000 0.00 0.00 0.00 3.21
262 295 1.470979 GGATCGGTCGCAGTACACATT 60.471 52.381 0.00 0.00 0.00 2.71
263 296 1.588404 GATCGGTCGCAGTACACATTG 59.412 52.381 0.00 0.00 0.00 2.82
264 297 1.011968 TCGGTCGCAGTACACATTGC 61.012 55.000 0.00 0.00 36.97 3.56
266 299 0.443869 GGTCGCAGTACACATTGCTG 59.556 55.000 0.00 0.00 38.16 4.41
267 300 1.428448 GTCGCAGTACACATTGCTGA 58.572 50.000 0.00 0.00 38.16 4.26
268 301 2.002586 GTCGCAGTACACATTGCTGAT 58.997 47.619 0.00 0.00 38.16 2.90
274 339 3.062639 CAGTACACATTGCTGATCGTTCC 59.937 47.826 0.00 0.00 32.39 3.62
294 359 0.387622 TAGTTCGCCAAAGACGACGG 60.388 55.000 0.00 0.00 39.67 4.79
296 361 3.793775 TTCGCCAAAGACGACGGCA 62.794 57.895 2.19 0.00 46.60 5.69
320 385 1.739562 GCACCGGCAGTCTTCTGAG 60.740 63.158 0.00 0.00 43.76 3.35
321 386 1.668294 CACCGGCAGTCTTCTGAGT 59.332 57.895 0.00 0.00 43.76 3.41
322 387 0.034059 CACCGGCAGTCTTCTGAGTT 59.966 55.000 0.00 0.00 43.76 3.01
323 388 0.318762 ACCGGCAGTCTTCTGAGTTC 59.681 55.000 0.00 0.00 43.76 3.01
324 389 0.605589 CCGGCAGTCTTCTGAGTTCT 59.394 55.000 0.00 0.00 43.76 3.01
325 390 1.671261 CCGGCAGTCTTCTGAGTTCTG 60.671 57.143 0.00 0.00 43.76 3.02
326 391 1.270826 CGGCAGTCTTCTGAGTTCTGA 59.729 52.381 0.00 0.00 43.76 3.27
327 392 2.682836 GGCAGTCTTCTGAGTTCTGAC 58.317 52.381 0.00 3.31 43.76 3.51
334 399 1.318576 TCTGAGTTCTGACGCTCACA 58.681 50.000 6.93 0.00 36.89 3.58
399 471 8.215954 AGAAATAGAAACTTTACACTAGGGGT 57.784 34.615 0.00 0.00 0.00 4.95
455 527 4.202202 ACAATGAAACGAAATTGCTGGGAA 60.202 37.500 0.00 0.00 37.30 3.97
657 729 4.052229 CAGACGAAGACCGCGGGT 62.052 66.667 31.76 17.59 43.32 5.28
699 771 4.410400 CCGCACCACCTTCCTCCC 62.410 72.222 0.00 0.00 0.00 4.30
723 795 0.039165 CCGCAAAGCAGGGAGAAAAC 60.039 55.000 0.00 0.00 0.00 2.43
771 844 2.063979 CCCCACTCGGCCATCACTA 61.064 63.158 2.24 0.00 0.00 2.74
872 945 2.059756 TCCCAGAACCTTCCCTTGAT 57.940 50.000 0.00 0.00 0.00 2.57
948 1021 2.029470 CACCTCGCTGTCTTCTTCTTCT 60.029 50.000 0.00 0.00 0.00 2.85
949 1022 2.630580 ACCTCGCTGTCTTCTTCTTCTT 59.369 45.455 0.00 0.00 0.00 2.52
950 1023 3.249917 CCTCGCTGTCTTCTTCTTCTTC 58.750 50.000 0.00 0.00 0.00 2.87
951 1024 3.305676 CCTCGCTGTCTTCTTCTTCTTCA 60.306 47.826 0.00 0.00 0.00 3.02
952 1025 3.906998 TCGCTGTCTTCTTCTTCTTCAG 58.093 45.455 0.00 0.00 0.00 3.02
953 1026 3.319405 TCGCTGTCTTCTTCTTCTTCAGT 59.681 43.478 0.00 0.00 0.00 3.41
954 1027 4.054671 CGCTGTCTTCTTCTTCTTCAGTT 58.945 43.478 0.00 0.00 0.00 3.16
957 1030 4.621991 TGTCTTCTTCTTCTTCAGTTCCG 58.378 43.478 0.00 0.00 0.00 4.30
959 1032 2.457366 TCTTCTTCTTCAGTTCCGCC 57.543 50.000 0.00 0.00 0.00 6.13
960 1033 1.971357 TCTTCTTCTTCAGTTCCGCCT 59.029 47.619 0.00 0.00 0.00 5.52
961 1034 2.368875 TCTTCTTCTTCAGTTCCGCCTT 59.631 45.455 0.00 0.00 0.00 4.35
962 1035 2.457366 TCTTCTTCAGTTCCGCCTTC 57.543 50.000 0.00 0.00 0.00 3.46
963 1036 1.002087 TCTTCTTCAGTTCCGCCTTCC 59.998 52.381 0.00 0.00 0.00 3.46
965 1038 1.125093 TCTTCAGTTCCGCCTTCCCA 61.125 55.000 0.00 0.00 0.00 4.37
966 1039 0.035056 CTTCAGTTCCGCCTTCCCAT 60.035 55.000 0.00 0.00 0.00 4.00
1062 1142 2.125350 GTCGAGAAGGCCAGGCAG 60.125 66.667 15.19 0.00 0.00 4.85
1092 1172 0.390860 CCCTCATCGCCGAGAAGAAT 59.609 55.000 0.00 0.00 34.79 2.40
1167 1256 1.565591 CGCGTGCCGAGTGTTTTTA 59.434 52.632 0.00 0.00 40.02 1.52
1174 1271 4.143906 CGTGCCGAGTGTTTTTATTTTTCG 60.144 41.667 0.00 0.00 0.00 3.46
1198 1295 1.227089 GCCTGATCTGTCGCGTCAT 60.227 57.895 5.77 0.00 0.00 3.06
1346 1443 2.664185 CGGATGCTCGAGCCCATG 60.664 66.667 33.23 17.44 41.18 3.66
1394 1491 0.669077 CCGATCTCTACCAGGTTCGG 59.331 60.000 14.02 14.02 40.03 4.30
1398 1495 3.718210 CTCTACCAGGTTCGGCGCC 62.718 68.421 19.07 19.07 0.00 6.53
1403 1500 2.978010 CAGGTTCGGCGCCAGTTT 60.978 61.111 28.98 4.22 0.00 2.66
1404 1501 2.203294 AGGTTCGGCGCCAGTTTT 60.203 55.556 28.98 5.48 0.00 2.43
1408 1505 2.122167 TTCGGCGCCAGTTTTGGTT 61.122 52.632 28.98 0.00 46.80 3.67
1420 1517 4.218417 CCAGTTTTGGTTAGATCTGGTTGG 59.782 45.833 5.18 0.00 39.79 3.77
1425 1522 2.027192 TGGTTAGATCTGGTTGGCAGTC 60.027 50.000 5.18 0.00 0.00 3.51
1428 1525 1.450312 GATCTGGTTGGCAGTCCCG 60.450 63.158 8.03 2.93 35.87 5.14
1505 1602 2.737376 GTTGTCGCCGTGGAGGTC 60.737 66.667 0.00 0.00 43.70 3.85
1603 1701 0.477795 AGGGTTTTAGGCAGGGGACT 60.478 55.000 0.00 0.00 46.44 3.85
1621 1719 0.762418 CTGTGTGGGTAGGTTGGTGA 59.238 55.000 0.00 0.00 0.00 4.02
1648 2007 6.828672 CCGAGTTTAAGGCTTTTAACTACTG 58.171 40.000 20.51 15.11 36.57 2.74
1655 2014 4.576879 AGGCTTTTAACTACTGGCAGTAC 58.423 43.478 22.96 10.69 0.00 2.73
1658 2017 5.235516 GCTTTTAACTACTGGCAGTACTCA 58.764 41.667 22.96 5.43 0.00 3.41
1665 2024 3.257469 ACTGGCAGTACTCATGTCATG 57.743 47.619 20.61 6.47 30.65 3.07
1671 2030 3.002042 GCAGTACTCATGTCATGATGTGC 59.998 47.826 15.84 16.92 38.85 4.57
1672 2031 3.244579 CAGTACTCATGTCATGATGTGCG 59.755 47.826 15.84 6.71 38.85 5.34
1674 2033 3.525268 ACTCATGTCATGATGTGCGTA 57.475 42.857 15.84 0.00 38.85 4.42
1678 2037 1.624487 TGTCATGATGTGCGTACGTC 58.376 50.000 17.78 17.78 42.09 4.34
1699 2058 1.650242 TTGGGTTGGTGGCTCTTGGA 61.650 55.000 0.00 0.00 0.00 3.53
1754 2113 6.092748 GCTTATTTGTTTGACACCACCTATG 58.907 40.000 0.00 0.00 0.00 2.23
1789 2148 0.179067 TGGAACACCACGGAGTTGTC 60.179 55.000 3.48 0.00 41.61 3.18
1796 2155 2.029380 CACCACGGAGTTGTCTGATACA 60.029 50.000 0.00 0.00 41.61 2.29
1797 2156 2.231478 ACCACGGAGTTGTCTGATACAG 59.769 50.000 0.00 0.00 41.61 2.74
1798 2157 2.231478 CCACGGAGTTGTCTGATACAGT 59.769 50.000 0.00 0.00 41.61 3.55
1811 2170 6.922407 TGTCTGATACAGTAGTAGTACTAGCG 59.078 42.308 10.38 7.23 37.40 4.26
1821 2180 5.496133 AGTAGTACTAGCGTATGTGTTGG 57.504 43.478 1.87 0.00 0.00 3.77
1824 2183 3.760151 AGTACTAGCGTATGTGTTGGTCA 59.240 43.478 0.00 0.00 0.00 4.02
1980 2343 2.291465 CCATCACCTATTGTGGCATTCG 59.709 50.000 0.00 0.00 45.48 3.34
1990 2353 5.596836 ATTGTGGCATTCGGTTATCATTT 57.403 34.783 0.00 0.00 0.00 2.32
1991 2354 4.368874 TGTGGCATTCGGTTATCATTTG 57.631 40.909 0.00 0.00 0.00 2.32
2016 2379 9.588096 TGGTATATGCAATCTTTCTAGTCTAGA 57.412 33.333 5.41 5.41 0.00 2.43
2037 2400 8.417106 TCTAGATATTAGTTCTTGTTGGCTCAG 58.583 37.037 0.00 0.00 0.00 3.35
2260 2624 8.816640 AGACCATGCAGTAAAGTTAATTTTTG 57.183 30.769 0.94 0.00 32.01 2.44
2282 2646 4.946784 CGCCTAGCAGTTTTGATACTTT 57.053 40.909 0.00 0.00 0.00 2.66
2333 2698 6.546395 CACTGAGTGCATTGGTTATAGTTTC 58.454 40.000 0.00 0.00 0.00 2.78
2336 2703 7.094634 ACTGAGTGCATTGGTTATAGTTTCTTG 60.095 37.037 0.00 0.00 0.00 3.02
2471 2838 7.418337 AACCCTCACAACATTTTTCTAACTT 57.582 32.000 0.00 0.00 0.00 2.66
2755 3133 5.415701 TGCATGAAAGTACCTTTTCCATCTC 59.584 40.000 0.00 0.00 36.46 2.75
2780 3158 4.584638 ACTGTTTGGTTATATGGAGGCA 57.415 40.909 0.00 0.00 0.00 4.75
2788 3166 3.341823 GTTATATGGAGGCAGCTGATGG 58.658 50.000 20.43 0.00 0.00 3.51
2790 3168 0.471191 TATGGAGGCAGCTGATGGTG 59.529 55.000 20.43 0.00 43.87 4.17
2828 3206 8.755696 TTTATTGTGTTGATTATTCTGTTGGC 57.244 30.769 0.00 0.00 0.00 4.52
2850 3229 4.443394 GCTCAAGTTGCAAGAAATCACTTG 59.557 41.667 15.78 15.78 46.69 3.16
2917 3300 2.441750 TGACCACCTAAGGCAAGTCTTT 59.558 45.455 0.00 0.00 0.00 2.52
3011 3394 6.074302 GCATATTTGCTCAATCTGCTTTCATG 60.074 38.462 0.35 0.00 45.77 3.07
3052 3435 5.103687 TGTATGCATGCATTGACATTGTTC 58.896 37.500 36.23 9.90 37.82 3.18
3058 3441 3.904571 TGCATTGACATTGTTCTCTTGC 58.095 40.909 0.00 0.00 0.00 4.01
3063 3446 4.209452 TGACATTGTTCTCTTGCGTTTC 57.791 40.909 0.00 0.00 0.00 2.78
3267 3652 0.908198 GGGAGCTTCTGAGTGGTGAT 59.092 55.000 0.00 0.00 0.00 3.06
3276 3661 4.061131 TCTGAGTGGTGATAAAGAGGGA 57.939 45.455 0.00 0.00 0.00 4.20
3324 3709 0.681733 TGCTGACTGACCCTGTCTTC 59.318 55.000 0.00 0.00 34.25 2.87
3368 3753 0.034059 GCGGTATGTCTCCCATCAGG 59.966 60.000 0.00 0.00 34.86 3.86
3391 3776 4.304939 GTCCACTTCACTGGTTGTAGTAC 58.695 47.826 0.00 0.00 33.77 2.73
3421 3806 3.637998 GCACCAGGATGCTGATTATTG 57.362 47.619 16.85 5.71 42.62 1.90
3428 3814 5.361857 CCAGGATGCTGATTATTGTTTTCCT 59.638 40.000 16.85 0.00 31.97 3.36
3429 3815 6.270815 CAGGATGCTGATTATTGTTTTCCTG 58.729 40.000 8.85 0.00 41.07 3.86
3555 3941 4.357142 TGATAGTATCTTTCGTCAACGCC 58.643 43.478 11.40 0.00 39.60 5.68
3574 3960 2.093869 GCCACTGTCTTATCGGTTACCA 60.094 50.000 1.13 0.00 0.00 3.25
3639 4027 5.297278 GTCTACTACTGCTGCTACTATGTGT 59.703 44.000 0.00 0.00 0.00 3.72
3642 4030 3.238108 ACTGCTGCTACTATGTGTGAC 57.762 47.619 0.00 0.00 0.00 3.67
3662 4050 1.004044 CCAGGGTGATCTTGTTCTGCT 59.996 52.381 0.00 0.00 0.00 4.24
3696 4084 1.486310 TCAGTGTGAACCAGCAGACTT 59.514 47.619 0.00 0.00 40.01 3.01
3697 4085 2.092968 TCAGTGTGAACCAGCAGACTTT 60.093 45.455 0.00 0.00 40.01 2.66
3733 4121 5.979993 TCTGTAATAATGTCCGTTGGCTTA 58.020 37.500 0.00 0.00 0.00 3.09
3803 4208 4.032217 CGGATCTATCGTATGAAATGCAGC 59.968 45.833 0.00 0.00 0.00 5.25
3812 4217 4.329801 CGTATGAAATGCAGCAGTGACTTA 59.670 41.667 0.00 0.00 0.00 2.24
3865 4270 6.372381 GTGCATTTTATTTTTGAGATGCCCTT 59.628 34.615 0.00 0.00 39.18 3.95
3875 4280 4.842531 TGAGATGCCCTTGATTTCAGTA 57.157 40.909 0.00 0.00 0.00 2.74
3882 4287 4.640201 TGCCCTTGATTTCAGTAGCAATAC 59.360 41.667 0.00 0.00 0.00 1.89
3921 4326 9.220767 GTTACAGGATCAAAGATACTGAAAACT 57.779 33.333 22.50 5.60 33.57 2.66
3926 4331 6.971184 GGATCAAAGATACTGAAAACTGCATG 59.029 38.462 0.00 0.00 0.00 4.06
3956 4361 2.884639 AGCTATTGTTGTTTGCCGACTT 59.115 40.909 0.00 0.00 0.00 3.01
3967 4372 4.096532 TGTTTGCCGACTTTTCACATTGTA 59.903 37.500 0.00 0.00 0.00 2.41
3970 4375 4.130857 TGCCGACTTTTCACATTGTAAGA 58.869 39.130 5.10 0.00 0.00 2.10
3971 4376 4.213270 TGCCGACTTTTCACATTGTAAGAG 59.787 41.667 5.10 1.68 0.00 2.85
3972 4377 4.712763 CCGACTTTTCACATTGTAAGAGC 58.287 43.478 5.10 0.00 0.00 4.09
3973 4378 4.452455 CCGACTTTTCACATTGTAAGAGCT 59.548 41.667 5.10 0.00 0.00 4.09
3985 4423 0.532573 TAAGAGCTTGCTGGTCGAGG 59.467 55.000 0.00 0.00 46.86 4.63
3999 4437 3.275088 GAGGCCGTCTCGTCTCAA 58.725 61.111 0.00 0.00 32.18 3.02
4000 4438 1.153997 GAGGCCGTCTCGTCTCAAC 60.154 63.158 0.00 0.00 32.18 3.18
4001 4439 2.126031 GGCCGTCTCGTCTCAACC 60.126 66.667 0.00 0.00 0.00 3.77
4002 4440 2.649034 GCCGTCTCGTCTCAACCA 59.351 61.111 0.00 0.00 0.00 3.67
4003 4441 1.215647 GCCGTCTCGTCTCAACCAT 59.784 57.895 0.00 0.00 0.00 3.55
4004 4442 0.802607 GCCGTCTCGTCTCAACCATC 60.803 60.000 0.00 0.00 0.00 3.51
4005 4443 0.179134 CCGTCTCGTCTCAACCATCC 60.179 60.000 0.00 0.00 0.00 3.51
4006 4444 0.179134 CGTCTCGTCTCAACCATCCC 60.179 60.000 0.00 0.00 0.00 3.85
4007 4445 0.175989 GTCTCGTCTCAACCATCCCC 59.824 60.000 0.00 0.00 0.00 4.81
4008 4446 0.252057 TCTCGTCTCAACCATCCCCA 60.252 55.000 0.00 0.00 0.00 4.96
4009 4447 0.176680 CTCGTCTCAACCATCCCCAG 59.823 60.000 0.00 0.00 0.00 4.45
4010 4448 1.450312 CGTCTCAACCATCCCCAGC 60.450 63.158 0.00 0.00 0.00 4.85
4043 4481 2.202544 GCACGAGCGACTCTGGAG 60.203 66.667 0.00 0.00 0.00 3.86
4044 4482 2.691771 GCACGAGCGACTCTGGAGA 61.692 63.158 4.49 0.00 0.00 3.71
4050 4488 3.007973 GCGACTCTGGAGACCACCC 62.008 68.421 4.49 0.00 0.00 4.61
4051 4489 1.304547 CGACTCTGGAGACCACCCT 60.305 63.158 4.49 0.00 0.00 4.34
4054 4492 2.607750 TCTGGAGACCACCCTGCC 60.608 66.667 0.00 0.00 0.00 4.85
4055 4493 2.930019 CTGGAGACCACCCTGCCA 60.930 66.667 0.00 0.00 0.00 4.92
4056 4494 3.249189 TGGAGACCACCCTGCCAC 61.249 66.667 0.00 0.00 0.00 5.01
4058 4496 3.249189 GAGACCACCCTGCCACCA 61.249 66.667 0.00 0.00 0.00 4.17
4059 4497 3.553095 GAGACCACCCTGCCACCAC 62.553 68.421 0.00 0.00 0.00 4.16
4062 4500 2.933287 CCACCCTGCCACCACCTA 60.933 66.667 0.00 0.00 0.00 3.08
4064 4502 2.122144 ACCCTGCCACCACCTACA 60.122 61.111 0.00 0.00 0.00 2.74
4066 4504 1.357272 ACCCTGCCACCACCTACAAA 61.357 55.000 0.00 0.00 0.00 2.83
4067 4505 0.609131 CCCTGCCACCACCTACAAAG 60.609 60.000 0.00 0.00 0.00 2.77
4069 4507 0.250901 CTGCCACCACCTACAAAGCT 60.251 55.000 0.00 0.00 0.00 3.74
4070 4508 0.184933 TGCCACCACCTACAAAGCTT 59.815 50.000 0.00 0.00 0.00 3.74
4077 4520 0.478507 ACCTACAAAGCTTGCCACCT 59.521 50.000 0.00 0.00 0.00 4.00
4078 4521 1.168714 CCTACAAAGCTTGCCACCTC 58.831 55.000 0.00 0.00 0.00 3.85
4111 4554 3.489813 TCGGTGTTGACGATGACTG 57.510 52.632 0.00 0.00 35.12 3.51
4112 4555 0.671796 TCGGTGTTGACGATGACTGT 59.328 50.000 0.00 0.00 35.12 3.55
4113 4556 0.784178 CGGTGTTGACGATGACTGTG 59.216 55.000 0.00 0.00 0.00 3.66
4114 4557 1.148310 GGTGTTGACGATGACTGTGG 58.852 55.000 0.00 0.00 0.00 4.17
4115 4558 0.512952 GTGTTGACGATGACTGTGGC 59.487 55.000 0.00 0.00 0.00 5.01
4116 4559 0.392706 TGTTGACGATGACTGTGGCT 59.607 50.000 0.00 0.00 0.00 4.75
4117 4560 1.202639 TGTTGACGATGACTGTGGCTT 60.203 47.619 0.00 0.00 0.00 4.35
4147 4590 0.033109 CCCTTTGTTCCCTCCCCATC 60.033 60.000 0.00 0.00 0.00 3.51
4151 4594 1.847798 TTGTTCCCTCCCCATCACCG 61.848 60.000 0.00 0.00 0.00 4.94
4227 4670 2.052237 GCGTTGACTTGGTGTGCG 60.052 61.111 0.00 0.00 0.00 5.34
4228 4671 2.631428 CGTTGACTTGGTGTGCGG 59.369 61.111 0.00 0.00 0.00 5.69
4232 4675 2.742372 GACTTGGTGTGCGGCGAT 60.742 61.111 12.98 0.00 0.00 4.58
4233 4676 3.027170 GACTTGGTGTGCGGCGATG 62.027 63.158 12.98 0.00 0.00 3.84
4264 4707 3.470709 CGTTGGGCATGATTACATCTCT 58.529 45.455 0.00 0.00 34.15 3.10
4266 4709 4.712476 GTTGGGCATGATTACATCTCTCT 58.288 43.478 0.00 0.00 34.15 3.10
4275 4718 4.021981 TGATTACATCTCTCTATGGTGCCG 60.022 45.833 0.00 0.00 0.00 5.69
4277 4720 0.320247 CATCTCTCTATGGTGCCGGC 60.320 60.000 22.73 22.73 0.00 6.13
4306 4749 1.001860 GCTCCATCTCTAGCCATGGTC 59.998 57.143 14.67 5.80 40.59 4.02
4323 4766 1.137513 GTCGTGTGTGTGGAGTTAGC 58.862 55.000 0.00 0.00 0.00 3.09
4325 4768 2.030540 GTCGTGTGTGTGGAGTTAGCTA 60.031 50.000 0.00 0.00 0.00 3.32
4347 4790 1.811266 CGTCTGGATCCGTGCAAGG 60.811 63.158 13.08 13.08 0.00 3.61
4352 4795 2.124151 GATCCGTGCAAGGGCCAT 60.124 61.111 19.08 4.89 42.91 4.40
4359 4802 2.902343 GCAAGGGCCATAGGTCGC 60.902 66.667 6.18 0.00 0.00 5.19
4372 4815 2.589442 GTCGCGACCACCCAACAA 60.589 61.111 28.61 0.00 0.00 2.83
4381 4968 1.777878 ACCACCCAACAATGGTCTGTA 59.222 47.619 0.00 0.00 46.62 2.74
4390 4977 0.037590 AATGGTCTGTAAAGGCCGCA 59.962 50.000 0.00 0.00 0.00 5.69
4392 4979 0.037590 TGGTCTGTAAAGGCCGCAAT 59.962 50.000 0.00 0.00 0.00 3.56
4461 5048 4.712476 ACATGAGAAGCAATCTATGGACC 58.288 43.478 0.00 0.00 38.96 4.46
4478 5065 3.311028 TGGACCTGGAGGATATGGTTGTA 60.311 47.826 0.00 0.00 38.94 2.41
4484 5071 2.158871 GGAGGATATGGTTGTACGGCAA 60.159 50.000 0.00 0.00 34.16 4.52
4533 5120 3.492102 ATACATGTAGCTGCGGGAATT 57.508 42.857 11.91 0.00 0.00 2.17
4534 5121 2.128771 ACATGTAGCTGCGGGAATTT 57.871 45.000 0.00 0.00 0.00 1.82
4535 5122 2.446435 ACATGTAGCTGCGGGAATTTT 58.554 42.857 0.00 0.00 0.00 1.82
4536 5123 2.164219 ACATGTAGCTGCGGGAATTTTG 59.836 45.455 0.00 0.00 0.00 2.44
4537 5124 1.173043 TGTAGCTGCGGGAATTTTGG 58.827 50.000 0.00 0.00 0.00 3.28
4538 5125 1.271652 TGTAGCTGCGGGAATTTTGGA 60.272 47.619 0.00 0.00 0.00 3.53
4539 5126 1.816224 GTAGCTGCGGGAATTTTGGAA 59.184 47.619 0.00 0.00 0.00 3.53
4540 5127 1.337118 AGCTGCGGGAATTTTGGAAA 58.663 45.000 0.00 0.00 0.00 3.13
4541 5128 1.691434 AGCTGCGGGAATTTTGGAAAA 59.309 42.857 0.00 0.00 0.00 2.29
4542 5129 2.103941 AGCTGCGGGAATTTTGGAAAAA 59.896 40.909 0.00 0.00 0.00 1.94
4543 5130 3.073678 GCTGCGGGAATTTTGGAAAAAT 58.926 40.909 0.00 0.00 0.00 1.82
4544 5131 3.120234 GCTGCGGGAATTTTGGAAAAATG 60.120 43.478 0.00 0.00 0.00 2.32
4545 5132 3.406764 TGCGGGAATTTTGGAAAAATGG 58.593 40.909 0.00 0.00 0.00 3.16
4546 5133 3.181450 TGCGGGAATTTTGGAAAAATGGT 60.181 39.130 0.00 0.00 0.00 3.55
4547 5134 3.188254 GCGGGAATTTTGGAAAAATGGTG 59.812 43.478 0.00 0.00 0.00 4.17
4548 5135 3.750652 CGGGAATTTTGGAAAAATGGTGG 59.249 43.478 0.00 0.00 0.00 4.61
4549 5136 3.505680 GGGAATTTTGGAAAAATGGTGGC 59.494 43.478 0.00 0.00 0.00 5.01
4550 5137 3.188254 GGAATTTTGGAAAAATGGTGGCG 59.812 43.478 0.00 0.00 0.00 5.69
4551 5138 3.760580 ATTTTGGAAAAATGGTGGCGA 57.239 38.095 0.00 0.00 0.00 5.54
4552 5139 2.517650 TTTGGAAAAATGGTGGCGAC 57.482 45.000 0.00 0.00 0.00 5.19
4553 5140 1.403814 TTGGAAAAATGGTGGCGACA 58.596 45.000 0.00 0.00 38.70 4.35
4554 5141 1.403814 TGGAAAAATGGTGGCGACAA 58.596 45.000 0.00 0.00 46.06 3.18
4564 5151 1.512926 GTGGCGACAACAGATTGACT 58.487 50.000 0.00 0.00 46.06 3.41
4565 5152 1.873591 GTGGCGACAACAGATTGACTT 59.126 47.619 0.00 0.00 46.06 3.01
4566 5153 2.096218 GTGGCGACAACAGATTGACTTC 60.096 50.000 0.00 0.00 46.06 3.01
4567 5154 1.126846 GGCGACAACAGATTGACTTCG 59.873 52.381 0.00 0.00 39.30 3.79
4568 5155 2.058798 GCGACAACAGATTGACTTCGA 58.941 47.619 0.00 0.00 39.30 3.71
4569 5156 2.668457 GCGACAACAGATTGACTTCGAT 59.332 45.455 0.00 0.00 39.30 3.59
4570 5157 3.482598 GCGACAACAGATTGACTTCGATG 60.483 47.826 0.00 0.00 39.30 3.84
4571 5158 3.675225 CGACAACAGATTGACTTCGATGT 59.325 43.478 3.22 3.22 39.30 3.06
4572 5159 4.433413 CGACAACAGATTGACTTCGATGTG 60.433 45.833 8.91 2.70 39.30 3.21
4573 5160 3.748048 ACAACAGATTGACTTCGATGTGG 59.252 43.478 8.91 0.00 39.30 4.17
4574 5161 3.685139 ACAGATTGACTTCGATGTGGT 57.315 42.857 8.91 0.00 35.85 4.16
4575 5162 3.329386 ACAGATTGACTTCGATGTGGTG 58.671 45.455 8.91 1.95 35.85 4.17
4576 5163 3.006859 ACAGATTGACTTCGATGTGGTGA 59.993 43.478 8.91 0.00 35.85 4.02
4577 5164 4.186926 CAGATTGACTTCGATGTGGTGAT 58.813 43.478 8.91 0.00 29.90 3.06
4578 5165 4.033702 CAGATTGACTTCGATGTGGTGATG 59.966 45.833 8.91 0.00 29.90 3.07
4579 5166 1.725641 TGACTTCGATGTGGTGATGC 58.274 50.000 8.91 0.00 0.00 3.91
4580 5167 1.276138 TGACTTCGATGTGGTGATGCT 59.724 47.619 8.91 0.00 0.00 3.79
4581 5168 2.289631 TGACTTCGATGTGGTGATGCTT 60.290 45.455 8.91 0.00 0.00 3.91
4582 5169 2.349886 GACTTCGATGTGGTGATGCTTC 59.650 50.000 8.91 0.00 0.00 3.86
4583 5170 2.027745 ACTTCGATGTGGTGATGCTTCT 60.028 45.455 2.72 0.00 0.00 2.85
4584 5171 2.299993 TCGATGTGGTGATGCTTCTC 57.700 50.000 0.88 0.00 0.00 2.87
4585 5172 1.550072 TCGATGTGGTGATGCTTCTCA 59.450 47.619 0.88 0.00 0.00 3.27
4586 5173 2.028203 TCGATGTGGTGATGCTTCTCAA 60.028 45.455 0.88 0.00 0.00 3.02
4587 5174 2.350804 CGATGTGGTGATGCTTCTCAAG 59.649 50.000 0.88 0.00 0.00 3.02
4588 5175 2.936919 TGTGGTGATGCTTCTCAAGT 57.063 45.000 0.88 0.00 0.00 3.16
4589 5176 4.507710 GATGTGGTGATGCTTCTCAAGTA 58.492 43.478 0.88 0.00 0.00 2.24
4590 5177 3.664107 TGTGGTGATGCTTCTCAAGTAC 58.336 45.455 0.88 0.00 0.00 2.73
4591 5178 3.003480 GTGGTGATGCTTCTCAAGTACC 58.997 50.000 0.88 0.00 0.00 3.34
4592 5179 2.271800 GGTGATGCTTCTCAAGTACCG 58.728 52.381 0.88 0.00 0.00 4.02
4593 5180 2.271800 GTGATGCTTCTCAAGTACCGG 58.728 52.381 0.00 0.00 0.00 5.28
4594 5181 1.899814 TGATGCTTCTCAAGTACCGGT 59.100 47.619 13.98 13.98 0.00 5.28
4595 5182 2.301870 TGATGCTTCTCAAGTACCGGTT 59.698 45.455 15.04 0.00 0.00 4.44
4596 5183 3.512329 TGATGCTTCTCAAGTACCGGTTA 59.488 43.478 15.04 0.00 0.00 2.85
4597 5184 4.161565 TGATGCTTCTCAAGTACCGGTTAT 59.838 41.667 15.04 0.00 0.00 1.89
4598 5185 4.119442 TGCTTCTCAAGTACCGGTTATC 57.881 45.455 15.04 3.96 0.00 1.75
4599 5186 3.512329 TGCTTCTCAAGTACCGGTTATCA 59.488 43.478 15.04 0.00 0.00 2.15
4600 5187 4.020928 TGCTTCTCAAGTACCGGTTATCAA 60.021 41.667 15.04 0.00 0.00 2.57
4601 5188 4.567159 GCTTCTCAAGTACCGGTTATCAAG 59.433 45.833 15.04 6.00 0.00 3.02
4602 5189 4.119442 TCTCAAGTACCGGTTATCAAGC 57.881 45.455 15.04 0.00 0.00 4.01
4603 5190 3.767673 TCTCAAGTACCGGTTATCAAGCT 59.232 43.478 15.04 0.00 0.00 3.74
4604 5191 4.113354 CTCAAGTACCGGTTATCAAGCTC 58.887 47.826 15.04 0.00 0.00 4.09
4605 5192 3.118884 TCAAGTACCGGTTATCAAGCTCC 60.119 47.826 15.04 0.00 0.00 4.70
4606 5193 2.463752 AGTACCGGTTATCAAGCTCCA 58.536 47.619 15.04 0.00 0.00 3.86
4607 5194 2.431057 AGTACCGGTTATCAAGCTCCAG 59.569 50.000 15.04 0.00 0.00 3.86
4608 5195 0.541863 ACCGGTTATCAAGCTCCAGG 59.458 55.000 0.00 0.00 0.00 4.45
4609 5196 0.179045 CCGGTTATCAAGCTCCAGGG 60.179 60.000 0.00 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.067106 GTCTGCCGATCTCACTGAAAAA 58.933 45.455 0.00 0.00 0.00 1.94
13 14 2.037121 TGTCTGCCGATCTCACTGAAAA 59.963 45.455 0.00 0.00 0.00 2.29
14 15 1.618343 TGTCTGCCGATCTCACTGAAA 59.382 47.619 0.00 0.00 0.00 2.69
15 16 1.256812 TGTCTGCCGATCTCACTGAA 58.743 50.000 0.00 0.00 0.00 3.02
16 17 1.256812 TTGTCTGCCGATCTCACTGA 58.743 50.000 0.00 0.00 0.00 3.41
17 18 1.998315 CTTTGTCTGCCGATCTCACTG 59.002 52.381 0.00 0.00 0.00 3.66
18 19 1.066573 CCTTTGTCTGCCGATCTCACT 60.067 52.381 0.00 0.00 0.00 3.41
19 20 1.066858 TCCTTTGTCTGCCGATCTCAC 60.067 52.381 0.00 0.00 0.00 3.51
20 21 1.266178 TCCTTTGTCTGCCGATCTCA 58.734 50.000 0.00 0.00 0.00 3.27
21 22 2.275318 CTTCCTTTGTCTGCCGATCTC 58.725 52.381 0.00 0.00 0.00 2.75
22 23 1.065854 CCTTCCTTTGTCTGCCGATCT 60.066 52.381 0.00 0.00 0.00 2.75
23 24 1.373570 CCTTCCTTTGTCTGCCGATC 58.626 55.000 0.00 0.00 0.00 3.69
24 25 0.678048 GCCTTCCTTTGTCTGCCGAT 60.678 55.000 0.00 0.00 0.00 4.18
25 26 1.302511 GCCTTCCTTTGTCTGCCGA 60.303 57.895 0.00 0.00 0.00 5.54
26 27 2.335712 GGCCTTCCTTTGTCTGCCG 61.336 63.158 0.00 0.00 0.00 5.69
27 28 0.827507 TTGGCCTTCCTTTGTCTGCC 60.828 55.000 3.32 0.00 39.33 4.85
28 29 0.315251 GTTGGCCTTCCTTTGTCTGC 59.685 55.000 3.32 0.00 0.00 4.26
29 30 0.593128 CGTTGGCCTTCCTTTGTCTG 59.407 55.000 3.32 0.00 0.00 3.51
30 31 1.172812 GCGTTGGCCTTCCTTTGTCT 61.173 55.000 3.32 0.00 0.00 3.41
31 32 1.285950 GCGTTGGCCTTCCTTTGTC 59.714 57.895 3.32 0.00 0.00 3.18
32 33 2.551912 CGCGTTGGCCTTCCTTTGT 61.552 57.895 3.32 0.00 35.02 2.83
33 34 1.586154 ATCGCGTTGGCCTTCCTTTG 61.586 55.000 5.77 0.00 35.02 2.77
34 35 1.303317 ATCGCGTTGGCCTTCCTTT 60.303 52.632 5.77 0.00 35.02 3.11
35 36 1.745489 GATCGCGTTGGCCTTCCTT 60.745 57.895 5.77 0.00 35.02 3.36
36 37 2.125106 GATCGCGTTGGCCTTCCT 60.125 61.111 5.77 0.00 35.02 3.36
37 38 2.038269 TTGATCGCGTTGGCCTTCC 61.038 57.895 5.77 0.00 35.02 3.46
38 39 1.134694 GTTGATCGCGTTGGCCTTC 59.865 57.895 5.77 0.00 35.02 3.46
39 40 2.677003 CGTTGATCGCGTTGGCCTT 61.677 57.895 5.77 0.00 35.02 4.35
47 48 1.131771 ATGCTATGACGTTGATCGCG 58.868 50.000 0.00 0.00 44.19 5.87
48 49 4.708868 TTAATGCTATGACGTTGATCGC 57.291 40.909 0.00 0.00 44.19 4.58
109 142 4.176851 GTCCCGTCTCTCCGTCGC 62.177 72.222 0.00 0.00 0.00 5.19
111 144 0.748729 ATCTGTCCCGTCTCTCCGTC 60.749 60.000 0.00 0.00 0.00 4.79
131 164 1.201647 CTCATTGTGAAGCTTGGCCTG 59.798 52.381 2.10 0.00 0.00 4.85
187 220 4.507710 TCATCTTCATTCGCCCATATAGC 58.492 43.478 0.00 0.00 0.00 2.97
201 234 8.477419 AGGTTTGGTCTAATTTTTCATCTTCA 57.523 30.769 0.00 0.00 0.00 3.02
229 262 1.269810 CGATCCGTTTCGCATCACG 59.730 57.895 0.00 0.00 45.62 4.35
231 264 0.804544 GACCGATCCGTTTCGCATCA 60.805 55.000 0.00 0.00 37.80 3.07
255 288 3.610040 AGGAACGATCAGCAATGTGTA 57.390 42.857 0.00 0.00 0.00 2.90
256 289 2.479566 AGGAACGATCAGCAATGTGT 57.520 45.000 0.00 0.00 0.00 3.72
257 290 3.525537 ACTAGGAACGATCAGCAATGTG 58.474 45.455 0.00 0.00 0.00 3.21
258 291 3.895232 ACTAGGAACGATCAGCAATGT 57.105 42.857 0.00 0.00 0.00 2.71
259 292 3.243877 CGAACTAGGAACGATCAGCAATG 59.756 47.826 0.00 0.00 0.00 2.82
260 293 3.448686 CGAACTAGGAACGATCAGCAAT 58.551 45.455 0.00 0.00 0.00 3.56
261 294 2.876091 CGAACTAGGAACGATCAGCAA 58.124 47.619 0.00 0.00 0.00 3.91
262 295 1.469251 GCGAACTAGGAACGATCAGCA 60.469 52.381 9.05 0.00 0.00 4.41
263 296 1.201343 GCGAACTAGGAACGATCAGC 58.799 55.000 9.05 0.00 0.00 4.26
264 297 1.134367 TGGCGAACTAGGAACGATCAG 59.866 52.381 9.05 0.00 0.00 2.90
266 299 2.288961 TTGGCGAACTAGGAACGATC 57.711 50.000 9.05 0.00 0.00 3.69
267 300 2.232941 TCTTTGGCGAACTAGGAACGAT 59.767 45.455 9.05 0.00 0.00 3.73
268 301 1.614903 TCTTTGGCGAACTAGGAACGA 59.385 47.619 9.05 0.00 0.00 3.85
274 339 0.982673 CGTCGTCTTTGGCGAACTAG 59.017 55.000 0.00 0.00 40.19 2.57
309 374 2.030363 AGCGTCAGAACTCAGAAGACTG 60.030 50.000 0.00 0.00 44.66 3.51
318 383 0.718343 GCATGTGAGCGTCAGAACTC 59.282 55.000 0.00 0.00 0.00 3.01
320 385 0.164647 GTGCATGTGAGCGTCAGAAC 59.835 55.000 0.00 0.00 37.31 3.01
321 386 0.033920 AGTGCATGTGAGCGTCAGAA 59.966 50.000 0.00 0.00 37.31 3.02
322 387 0.887933 TAGTGCATGTGAGCGTCAGA 59.112 50.000 0.00 0.00 37.31 3.27
323 388 1.713597 TTAGTGCATGTGAGCGTCAG 58.286 50.000 0.00 0.00 37.31 3.51
324 389 2.094026 AGATTAGTGCATGTGAGCGTCA 60.094 45.455 0.00 0.00 37.31 4.35
325 390 2.283617 CAGATTAGTGCATGTGAGCGTC 59.716 50.000 0.00 0.00 37.31 5.19
326 391 2.274437 CAGATTAGTGCATGTGAGCGT 58.726 47.619 0.00 0.00 37.31 5.07
327 392 1.004185 GCAGATTAGTGCATGTGAGCG 60.004 52.381 0.00 0.00 43.41 5.03
379 451 7.716560 GTTTTCACCCCTAGTGTAAAGTTTCTA 59.283 37.037 0.00 0.00 43.69 2.10
380 452 6.544931 GTTTTCACCCCTAGTGTAAAGTTTCT 59.455 38.462 0.00 0.00 43.69 2.52
381 453 6.544931 AGTTTTCACCCCTAGTGTAAAGTTTC 59.455 38.462 0.00 0.00 43.11 2.78
382 454 6.320418 CAGTTTTCACCCCTAGTGTAAAGTTT 59.680 38.462 3.43 0.00 43.11 2.66
383 455 5.826208 CAGTTTTCACCCCTAGTGTAAAGTT 59.174 40.000 3.43 0.00 43.11 2.66
384 456 5.131475 TCAGTTTTCACCCCTAGTGTAAAGT 59.869 40.000 0.00 0.00 45.18 2.66
385 457 5.617252 TCAGTTTTCACCCCTAGTGTAAAG 58.383 41.667 0.00 0.00 43.69 1.85
391 463 3.135167 TCGTTTCAGTTTTCACCCCTAGT 59.865 43.478 0.00 0.00 0.00 2.57
392 464 3.735591 TCGTTTCAGTTTTCACCCCTAG 58.264 45.455 0.00 0.00 0.00 3.02
393 465 3.842007 TCGTTTCAGTTTTCACCCCTA 57.158 42.857 0.00 0.00 0.00 3.53
394 466 2.721425 TCGTTTCAGTTTTCACCCCT 57.279 45.000 0.00 0.00 0.00 4.79
395 467 3.786516 TTTCGTTTCAGTTTTCACCCC 57.213 42.857 0.00 0.00 0.00 4.95
396 468 4.026062 GCAATTTCGTTTCAGTTTTCACCC 60.026 41.667 0.00 0.00 0.00 4.61
397 469 4.803613 AGCAATTTCGTTTCAGTTTTCACC 59.196 37.500 0.00 0.00 0.00 4.02
398 470 5.949233 AGCAATTTCGTTTCAGTTTTCAC 57.051 34.783 0.00 0.00 0.00 3.18
399 471 6.959671 AAAGCAATTTCGTTTCAGTTTTCA 57.040 29.167 0.00 0.00 0.00 2.69
429 501 5.335583 CCCAGCAATTTCGTTTCATTGTCTA 60.336 40.000 0.00 0.00 33.58 2.59
430 502 4.549458 CCAGCAATTTCGTTTCATTGTCT 58.451 39.130 0.00 0.00 33.58 3.41
433 505 3.911868 TCCCAGCAATTTCGTTTCATTG 58.088 40.909 0.00 0.00 34.09 2.82
540 612 3.675619 GACCCGGGTCCGTCATTGG 62.676 68.421 39.24 3.09 39.08 3.16
657 729 0.690192 TTGGTCATTTCGCTGGGAGA 59.310 50.000 0.00 0.00 0.00 3.71
663 735 1.000274 GGCTGTTTTGGTCATTTCGCT 60.000 47.619 0.00 0.00 0.00 4.93
699 771 4.107051 CCCTGCTTTGCGGCGAAG 62.107 66.667 22.87 22.87 32.89 3.79
760 833 2.655364 CGCGAGTAGTGATGGCCG 60.655 66.667 0.00 0.00 0.00 6.13
852 925 1.827792 TCAAGGGAAGGTTCTGGGAA 58.172 50.000 0.00 0.00 0.00 3.97
948 1021 0.035439 GATGGGAAGGCGGAACTGAA 60.035 55.000 0.00 0.00 0.00 3.02
949 1022 1.602237 GATGGGAAGGCGGAACTGA 59.398 57.895 0.00 0.00 0.00 3.41
950 1023 1.452108 GGATGGGAAGGCGGAACTG 60.452 63.158 0.00 0.00 0.00 3.16
951 1024 2.680370 GGGATGGGAAGGCGGAACT 61.680 63.158 0.00 0.00 0.00 3.01
952 1025 2.124278 GGGATGGGAAGGCGGAAC 60.124 66.667 0.00 0.00 0.00 3.62
953 1026 3.416880 GGGGATGGGAAGGCGGAA 61.417 66.667 0.00 0.00 0.00 4.30
959 1032 2.403132 GATCAGGCGGGGATGGGAAG 62.403 65.000 0.00 0.00 0.00 3.46
960 1033 2.368192 ATCAGGCGGGGATGGGAA 60.368 61.111 0.00 0.00 0.00 3.97
961 1034 2.849162 GATCAGGCGGGGATGGGA 60.849 66.667 0.00 0.00 0.00 4.37
962 1035 4.320456 CGATCAGGCGGGGATGGG 62.320 72.222 0.00 0.00 0.00 4.00
1160 1249 5.694006 CAGGCCATGACGAAAAATAAAAACA 59.306 36.000 5.01 0.00 0.00 2.83
1167 1256 3.379372 CAGATCAGGCCATGACGAAAAAT 59.621 43.478 5.01 0.00 41.91 1.82
1174 1271 1.156645 GCGACAGATCAGGCCATGAC 61.157 60.000 5.01 1.63 41.91 3.06
1226 1323 2.126580 GACACGTCGAAGGTCCCG 60.127 66.667 0.00 0.00 0.00 5.14
1346 1443 0.326618 TGGTGGGGATCTCCTCCTTC 60.327 60.000 28.77 7.72 44.28 3.46
1394 1491 2.084546 AGATCTAACCAAAACTGGCGC 58.915 47.619 0.00 0.00 0.00 6.53
1398 1495 4.321230 GCCAACCAGATCTAACCAAAACTG 60.321 45.833 0.00 0.00 0.00 3.16
1403 1500 2.375174 ACTGCCAACCAGATCTAACCAA 59.625 45.455 0.00 0.00 44.64 3.67
1404 1501 1.985159 ACTGCCAACCAGATCTAACCA 59.015 47.619 0.00 0.00 44.64 3.67
1408 1505 1.204146 GGGACTGCCAACCAGATCTA 58.796 55.000 0.00 0.00 44.64 1.98
1428 1525 0.736325 CACACCCAGTCGACCGAATC 60.736 60.000 13.01 0.00 0.00 2.52
1443 1540 6.917533 AGAAATGAATCATCAGAAACCACAC 58.082 36.000 0.00 0.00 39.39 3.82
1603 1701 1.073125 CATCACCAACCTACCCACACA 59.927 52.381 0.00 0.00 0.00 3.72
1638 1736 6.014925 TGACATGAGTACTGCCAGTAGTTAAA 60.015 38.462 13.27 3.88 34.66 1.52
1639 1737 5.479027 TGACATGAGTACTGCCAGTAGTTAA 59.521 40.000 13.27 6.15 34.66 2.01
1641 1739 3.832490 TGACATGAGTACTGCCAGTAGTT 59.168 43.478 13.27 1.29 34.66 2.24
1643 1741 4.098501 TCATGACATGAGTACTGCCAGTAG 59.901 45.833 14.24 0.00 33.59 2.57
1644 1742 4.023291 TCATGACATGAGTACTGCCAGTA 58.977 43.478 14.24 0.00 33.59 2.74
1648 2007 3.558829 CACATCATGACATGAGTACTGCC 59.441 47.826 22.00 0.00 43.53 4.85
1655 2014 2.217167 CGTACGCACATCATGACATGAG 59.783 50.000 22.00 15.93 43.53 2.90
1658 2017 2.159240 AGACGTACGCACATCATGACAT 60.159 45.455 16.72 0.00 0.00 3.06
1665 2024 0.719465 CCCAAAGACGTACGCACATC 59.281 55.000 16.72 5.24 0.00 3.06
1671 2030 0.863144 CACCAACCCAAAGACGTACG 59.137 55.000 15.01 15.01 0.00 3.67
1672 2031 1.232119 CCACCAACCCAAAGACGTAC 58.768 55.000 0.00 0.00 0.00 3.67
1674 2033 1.826487 GCCACCAACCCAAAGACGT 60.826 57.895 0.00 0.00 0.00 4.34
1678 2037 0.675633 CAAGAGCCACCAACCCAAAG 59.324 55.000 0.00 0.00 0.00 2.77
1723 2082 0.457681 CAAACAAATAAGCCGCCGGG 60.458 55.000 4.77 0.00 0.00 5.73
1733 2092 7.589958 AAACATAGGTGGTGTCAAACAAATA 57.410 32.000 0.00 0.00 0.00 1.40
1789 2148 8.862074 CATACGCTAGTACTACTACTGTATCAG 58.138 40.741 0.00 0.00 34.79 2.90
1796 2155 6.259608 CCAACACATACGCTAGTACTACTACT 59.740 42.308 0.00 0.00 37.04 2.57
1797 2156 6.037610 ACCAACACATACGCTAGTACTACTAC 59.962 42.308 0.00 0.00 35.39 2.73
1798 2157 6.115446 ACCAACACATACGCTAGTACTACTA 58.885 40.000 0.00 0.00 35.39 1.82
1811 2170 1.060553 CGCGTCATGACCAACACATAC 59.939 52.381 20.03 0.00 0.00 2.39
1821 2180 4.865761 TAGGCCGCGCGTCATGAC 62.866 66.667 29.95 15.89 0.00 3.06
1824 2183 0.944311 CTTATTAGGCCGCGCGTCAT 60.944 55.000 29.95 17.78 0.00 3.06
1990 2353 9.588096 TCTAGACTAGAAAGATTGCATATACCA 57.412 33.333 9.85 0.00 0.00 3.25
2016 2379 8.814038 AAATCTGAGCCAACAAGAACTAATAT 57.186 30.769 0.00 0.00 0.00 1.28
2037 2400 6.601741 TTTGGTGAATGCTTGACAAAAATC 57.398 33.333 0.00 0.00 0.00 2.17
2152 2515 5.887754 TGGCCCTTTCTATTTCACTTAAGT 58.112 37.500 1.12 1.12 0.00 2.24
2156 2519 3.511540 GCTTGGCCCTTTCTATTTCACTT 59.488 43.478 0.00 0.00 0.00 3.16
2158 2521 2.825532 TGCTTGGCCCTTTCTATTTCAC 59.174 45.455 0.00 0.00 0.00 3.18
2260 2624 2.280628 AGTATCAAAACTGCTAGGCGC 58.719 47.619 0.00 0.00 39.77 6.53
2282 2646 7.153985 TCATCGATTATCACATATCACAGCAA 58.846 34.615 0.00 0.00 0.00 3.91
2333 2698 6.360681 GTGCTCAGCTAAACAATTACAACAAG 59.639 38.462 0.00 0.00 0.00 3.16
2336 2703 5.757886 TGTGCTCAGCTAAACAATTACAAC 58.242 37.500 0.00 0.00 0.00 3.32
2471 2838 9.715121 ATTTGTTCCATAGTACGTCTTTTCTAA 57.285 29.630 0.00 0.00 0.00 2.10
2572 2943 3.820557 AGCCTTCTTTAGTGAGCAAACA 58.179 40.909 0.00 0.00 0.00 2.83
2669 3047 2.472695 AGACTGGACTGCGCAAATTA 57.527 45.000 13.05 0.00 0.00 1.40
2755 3133 7.450074 TGCCTCCATATAACCAAACAGTATAG 58.550 38.462 0.00 0.00 0.00 1.31
2760 3138 3.316308 GCTGCCTCCATATAACCAAACAG 59.684 47.826 0.00 0.00 0.00 3.16
2780 3158 7.472334 AAATTTCATAAGTTCACCATCAGCT 57.528 32.000 0.00 0.00 0.00 4.24
2828 3206 5.585390 ACAAGTGATTTCTTGCAACTTGAG 58.415 37.500 24.62 4.28 45.86 3.02
2850 3229 9.788960 GGAATGGAAATCATTAGTGAAAGTAAC 57.211 33.333 0.00 0.00 45.36 2.50
3011 3394 7.094631 TGCATACAACGATCCAGGTATATAAC 58.905 38.462 0.00 0.00 0.00 1.89
3052 3435 7.201565 CCCTATAGAAAAAGAGAAACGCAAGAG 60.202 40.741 0.00 0.00 43.62 2.85
3058 3441 7.064728 CACCTTCCCTATAGAAAAAGAGAAACG 59.935 40.741 0.00 0.00 0.00 3.60
3063 3446 5.126779 GGCACCTTCCCTATAGAAAAAGAG 58.873 45.833 0.00 0.60 0.00 2.85
3267 3652 4.020128 GGAAGCTGAAGAAGTCCCTCTTTA 60.020 45.833 0.00 0.00 35.76 1.85
3276 3661 3.118261 TGTCACTTGGAAGCTGAAGAAGT 60.118 43.478 7.26 2.06 0.00 3.01
3324 3709 0.035056 ATTTCTCCACAAGAGGGCGG 60.035 55.000 0.00 0.00 43.44 6.13
3368 3753 2.104281 ACTACAACCAGTGAAGTGGACC 59.896 50.000 11.20 0.00 40.44 4.46
3391 3776 2.486982 GCATCCTGGTGCTGCTTATATG 59.513 50.000 12.17 0.00 41.82 1.78
3421 3806 7.610305 TCATCCTACCAGAATTAACAGGAAAAC 59.390 37.037 0.00 0.00 35.88 2.43
3428 3814 6.632672 GCCTTCTCATCCTACCAGAATTAACA 60.633 42.308 0.00 0.00 0.00 2.41
3429 3815 5.760743 GCCTTCTCATCCTACCAGAATTAAC 59.239 44.000 0.00 0.00 0.00 2.01
3555 3941 5.063438 CACAATGGTAACCGATAAGACAGTG 59.937 44.000 0.00 0.00 0.00 3.66
3639 4027 2.038952 CAGAACAAGATCACCCTGGTCA 59.961 50.000 0.00 0.00 27.47 4.02
3642 4030 1.004044 AGCAGAACAAGATCACCCTGG 59.996 52.381 0.00 0.00 0.00 4.45
3662 4050 3.332783 TCACACTGACCCCTAGTCTAGAA 59.667 47.826 8.56 0.00 46.46 2.10
3778 4166 5.778862 TGCATTTCATACGATAGATCCGAA 58.221 37.500 0.00 0.00 41.38 4.30
3803 4208 4.572389 GCAAGGTACCATGATAAGTCACTG 59.428 45.833 21.07 0.00 37.14 3.66
3812 4217 1.134128 TCATGCGCAAGGTACCATGAT 60.134 47.619 21.07 2.71 39.14 2.45
3882 4287 3.921677 TCCTGTAACGAAACCTAAGCAG 58.078 45.455 0.00 0.00 0.00 4.24
3921 4326 3.117550 ACAATAGCTATCCCAACCATGCA 60.118 43.478 6.72 0.00 0.00 3.96
3926 4331 5.650543 CAAACAACAATAGCTATCCCAACC 58.349 41.667 6.72 0.00 0.00 3.77
3956 4361 4.022935 CCAGCAAGCTCTTACAATGTGAAA 60.023 41.667 0.00 0.00 0.00 2.69
3967 4372 1.294780 CCTCGACCAGCAAGCTCTT 59.705 57.895 0.00 0.00 0.00 2.85
3970 4375 4.400961 GGCCTCGACCAGCAAGCT 62.401 66.667 0.00 0.00 0.00 3.74
3972 4377 4.379243 ACGGCCTCGACCAGCAAG 62.379 66.667 0.00 0.00 40.11 4.01
3973 4378 4.373116 GACGGCCTCGACCAGCAA 62.373 66.667 0.00 0.00 40.11 3.91
3985 4423 0.802607 GATGGTTGAGACGAGACGGC 60.803 60.000 0.00 0.00 33.59 5.68
3993 4431 1.077429 GGCTGGGGATGGTTGAGAC 60.077 63.158 0.00 0.00 0.00 3.36
3994 4432 2.308722 GGGCTGGGGATGGTTGAGA 61.309 63.158 0.00 0.00 0.00 3.27
3995 4433 2.276740 GGGCTGGGGATGGTTGAG 59.723 66.667 0.00 0.00 0.00 3.02
3996 4434 3.346734 GGGGCTGGGGATGGTTGA 61.347 66.667 0.00 0.00 0.00 3.18
3997 4435 4.463788 GGGGGCTGGGGATGGTTG 62.464 72.222 0.00 0.00 0.00 3.77
4031 4469 1.979693 GGTGGTCTCCAGAGTCGCT 60.980 63.158 0.00 0.00 32.34 4.93
4038 4476 2.930019 TGGCAGGGTGGTCTCCAG 60.930 66.667 0.00 0.00 32.34 3.86
4043 4481 4.660938 GGTGGTGGCAGGGTGGTC 62.661 72.222 0.00 0.00 0.00 4.02
4044 4482 3.803311 TAGGTGGTGGCAGGGTGGT 62.803 63.158 0.00 0.00 0.00 4.16
4050 4488 0.250901 AGCTTTGTAGGTGGTGGCAG 60.251 55.000 0.00 0.00 0.00 4.85
4051 4489 0.184933 AAGCTTTGTAGGTGGTGGCA 59.815 50.000 0.00 0.00 31.15 4.92
4054 4492 0.598065 GGCAAGCTTTGTAGGTGGTG 59.402 55.000 0.00 0.00 31.15 4.17
4055 4493 0.184933 TGGCAAGCTTTGTAGGTGGT 59.815 50.000 0.00 0.00 31.15 4.16
4056 4494 0.598065 GTGGCAAGCTTTGTAGGTGG 59.402 55.000 0.00 0.00 31.15 4.61
4058 4496 0.478507 AGGTGGCAAGCTTTGTAGGT 59.521 50.000 0.00 0.00 0.00 3.08
4059 4497 1.168714 GAGGTGGCAAGCTTTGTAGG 58.831 55.000 0.00 0.00 33.19 3.18
4061 4499 0.605319 CGGAGGTGGCAAGCTTTGTA 60.605 55.000 0.00 0.00 33.19 2.41
4062 4500 1.898574 CGGAGGTGGCAAGCTTTGT 60.899 57.895 0.00 0.00 33.19 2.83
4064 4502 2.985847 GCGGAGGTGGCAAGCTTT 60.986 61.111 0.00 0.00 33.19 3.51
4077 4520 3.849951 GATGGCTTCTCCGGCGGA 61.850 66.667 29.14 29.14 37.80 5.54
4108 4551 0.995024 ATAGCAAGGGAAGCCACAGT 59.005 50.000 0.00 0.00 0.00 3.55
4111 4554 0.466372 GGGATAGCAAGGGAAGCCAC 60.466 60.000 0.00 0.00 0.00 5.01
4112 4555 0.624500 AGGGATAGCAAGGGAAGCCA 60.625 55.000 0.00 0.00 0.00 4.75
4113 4556 0.553333 AAGGGATAGCAAGGGAAGCC 59.447 55.000 0.00 0.00 0.00 4.35
4114 4557 2.027385 CAAAGGGATAGCAAGGGAAGC 58.973 52.381 0.00 0.00 0.00 3.86
4115 4558 3.372440 ACAAAGGGATAGCAAGGGAAG 57.628 47.619 0.00 0.00 0.00 3.46
4116 4559 3.563479 GGAACAAAGGGATAGCAAGGGAA 60.563 47.826 0.00 0.00 0.00 3.97
4117 4560 2.025321 GGAACAAAGGGATAGCAAGGGA 60.025 50.000 0.00 0.00 0.00 4.20
4156 4599 2.915738 ATCGACGAGGTGTTAGTCAC 57.084 50.000 3.01 0.00 45.47 3.67
4159 4602 2.288579 TGCAAATCGACGAGGTGTTAGT 60.289 45.455 3.01 0.00 0.00 2.24
4162 4605 1.148310 CTGCAAATCGACGAGGTGTT 58.852 50.000 3.01 0.00 0.00 3.32
4163 4606 1.291877 GCTGCAAATCGACGAGGTGT 61.292 55.000 3.01 0.00 0.00 4.16
4205 4648 1.095228 ACACCAAGTCAACGCCACAG 61.095 55.000 0.00 0.00 0.00 3.66
4256 4699 2.239400 CCGGCACCATAGAGAGATGTA 58.761 52.381 0.00 0.00 0.00 2.29
4264 4707 2.589540 CAAGGCCGGCACCATAGA 59.410 61.111 30.85 0.00 0.00 1.98
4266 4709 4.813235 GGCAAGGCCGGCACCATA 62.813 66.667 30.85 0.00 39.62 2.74
4277 4720 3.764160 GAGATGGAGCCCGGCAAGG 62.764 68.421 13.15 0.00 40.63 3.61
4291 4734 1.410517 CACACGACCATGGCTAGAGAT 59.589 52.381 13.04 0.00 0.00 2.75
4306 4749 2.228103 TCTAGCTAACTCCACACACACG 59.772 50.000 0.00 0.00 0.00 4.49
4323 4766 0.309302 CACGGATCCAGACGCTCTAG 59.691 60.000 13.41 0.00 0.00 2.43
4325 4768 3.069980 GCACGGATCCAGACGCTCT 62.070 63.158 13.41 0.00 0.00 4.09
4332 4775 2.825836 GCCCTTGCACGGATCCAG 60.826 66.667 11.54 7.30 37.47 3.86
4359 4802 4.492604 ACCATTGTTGGGTGGTCG 57.507 55.556 0.00 0.00 45.30 4.79
4372 4815 0.037590 TTGCGGCCTTTACAGACCAT 59.962 50.000 0.00 0.00 0.00 3.55
4378 4965 0.963355 GGACCATTGCGGCCTTTACA 60.963 55.000 0.00 0.00 39.03 2.41
4381 4968 3.061848 CGGACCATTGCGGCCTTT 61.062 61.111 0.00 0.00 39.03 3.11
4390 4977 2.454459 AAACCATGCCCCGGACCATT 62.454 55.000 0.73 0.00 0.00 3.16
4392 4979 3.153629 AAAACCATGCCCCGGACCA 62.154 57.895 0.73 0.00 0.00 4.02
4461 5048 2.548067 GCCGTACAACCATATCCTCCAG 60.548 54.545 0.00 0.00 0.00 3.86
4487 5074 3.623703 GAAGTCCCTCCCCCGTTGC 62.624 68.421 0.00 0.00 0.00 4.17
4488 5075 1.918800 AGAAGTCCCTCCCCCGTTG 60.919 63.158 0.00 0.00 0.00 4.10
4489 5076 1.918800 CAGAAGTCCCTCCCCCGTT 60.919 63.158 0.00 0.00 0.00 4.44
4490 5077 2.284699 CAGAAGTCCCTCCCCCGT 60.285 66.667 0.00 0.00 0.00 5.28
4491 5078 2.038975 TCAGAAGTCCCTCCCCCG 59.961 66.667 0.00 0.00 0.00 5.73
4492 5079 1.996187 GGTCAGAAGTCCCTCCCCC 60.996 68.421 0.00 0.00 0.00 5.40
4513 5100 3.492102 AATTCCCGCAGCTACATGTAT 57.508 42.857 5.91 0.00 0.00 2.29
4514 5101 3.275617 AAATTCCCGCAGCTACATGTA 57.724 42.857 5.25 5.25 0.00 2.29
4533 5120 1.757118 TGTCGCCACCATTTTTCCAAA 59.243 42.857 0.00 0.00 0.00 3.28
4534 5121 1.403814 TGTCGCCACCATTTTTCCAA 58.596 45.000 0.00 0.00 0.00 3.53
4535 5122 1.067821 GTTGTCGCCACCATTTTTCCA 59.932 47.619 0.00 0.00 0.00 3.53
4536 5123 1.067821 TGTTGTCGCCACCATTTTTCC 59.932 47.619 0.00 0.00 0.00 3.13
4537 5124 2.034053 TCTGTTGTCGCCACCATTTTTC 59.966 45.455 0.00 0.00 0.00 2.29
4538 5125 2.028130 TCTGTTGTCGCCACCATTTTT 58.972 42.857 0.00 0.00 0.00 1.94
4539 5126 1.686355 TCTGTTGTCGCCACCATTTT 58.314 45.000 0.00 0.00 0.00 1.82
4540 5127 1.909700 ATCTGTTGTCGCCACCATTT 58.090 45.000 0.00 0.00 0.00 2.32
4541 5128 1.541147 CAATCTGTTGTCGCCACCATT 59.459 47.619 0.00 0.00 0.00 3.16
4542 5129 1.167851 CAATCTGTTGTCGCCACCAT 58.832 50.000 0.00 0.00 0.00 3.55
4543 5130 0.107643 TCAATCTGTTGTCGCCACCA 59.892 50.000 0.00 0.00 36.69 4.17
4544 5131 0.517316 GTCAATCTGTTGTCGCCACC 59.483 55.000 0.00 0.00 36.69 4.61
4545 5132 1.512926 AGTCAATCTGTTGTCGCCAC 58.487 50.000 0.00 0.00 36.69 5.01
4546 5133 2.143122 GAAGTCAATCTGTTGTCGCCA 58.857 47.619 0.00 0.00 36.69 5.69
4547 5134 1.126846 CGAAGTCAATCTGTTGTCGCC 59.873 52.381 0.00 0.00 36.69 5.54
4548 5135 2.058798 TCGAAGTCAATCTGTTGTCGC 58.941 47.619 0.00 0.00 33.75 5.19
4549 5136 3.675225 ACATCGAAGTCAATCTGTTGTCG 59.325 43.478 0.00 0.00 36.69 4.35
4550 5137 4.143030 CCACATCGAAGTCAATCTGTTGTC 60.143 45.833 0.00 0.00 36.69 3.18
4551 5138 3.748048 CCACATCGAAGTCAATCTGTTGT 59.252 43.478 0.00 0.00 36.69 3.32
4552 5139 3.748048 ACCACATCGAAGTCAATCTGTTG 59.252 43.478 0.00 0.00 36.65 3.33
4553 5140 3.748048 CACCACATCGAAGTCAATCTGTT 59.252 43.478 0.00 0.00 0.00 3.16
4554 5141 3.006859 TCACCACATCGAAGTCAATCTGT 59.993 43.478 0.00 0.00 0.00 3.41
4555 5142 3.588955 TCACCACATCGAAGTCAATCTG 58.411 45.455 0.00 0.00 0.00 2.90
4556 5143 3.961480 TCACCACATCGAAGTCAATCT 57.039 42.857 0.00 0.00 0.00 2.40
4557 5144 3.242543 GCATCACCACATCGAAGTCAATC 60.243 47.826 0.00 0.00 0.00 2.67
4558 5145 2.679837 GCATCACCACATCGAAGTCAAT 59.320 45.455 0.00 0.00 0.00 2.57
4559 5146 2.076100 GCATCACCACATCGAAGTCAA 58.924 47.619 0.00 0.00 0.00 3.18
4560 5147 1.276138 AGCATCACCACATCGAAGTCA 59.724 47.619 0.00 0.00 0.00 3.41
4561 5148 2.015736 AGCATCACCACATCGAAGTC 57.984 50.000 0.00 0.00 0.00 3.01
4562 5149 2.027745 AGAAGCATCACCACATCGAAGT 60.028 45.455 0.00 0.00 0.00 3.01
4563 5150 2.606725 GAGAAGCATCACCACATCGAAG 59.393 50.000 0.00 0.00 0.00 3.79
4564 5151 2.028203 TGAGAAGCATCACCACATCGAA 60.028 45.455 0.00 0.00 0.00 3.71
4565 5152 1.550072 TGAGAAGCATCACCACATCGA 59.450 47.619 0.00 0.00 0.00 3.59
4566 5153 2.014335 TGAGAAGCATCACCACATCG 57.986 50.000 0.00 0.00 0.00 3.84
4567 5154 3.341823 ACTTGAGAAGCATCACCACATC 58.658 45.455 0.00 0.00 0.00 3.06
4568 5155 3.430042 ACTTGAGAAGCATCACCACAT 57.570 42.857 0.00 0.00 0.00 3.21
4569 5156 2.936919 ACTTGAGAAGCATCACCACA 57.063 45.000 0.00 0.00 0.00 4.17
4570 5157 3.003480 GGTACTTGAGAAGCATCACCAC 58.997 50.000 0.00 0.00 0.00 4.16
4571 5158 2.353704 CGGTACTTGAGAAGCATCACCA 60.354 50.000 0.00 0.00 0.00 4.17
4572 5159 2.271800 CGGTACTTGAGAAGCATCACC 58.728 52.381 0.00 0.00 0.00 4.02
4573 5160 2.271800 CCGGTACTTGAGAAGCATCAC 58.728 52.381 0.00 0.00 0.00 3.06
4574 5161 1.899814 ACCGGTACTTGAGAAGCATCA 59.100 47.619 4.49 0.00 0.00 3.07
4575 5162 2.674796 ACCGGTACTTGAGAAGCATC 57.325 50.000 4.49 0.00 0.00 3.91
4576 5163 4.161565 TGATAACCGGTACTTGAGAAGCAT 59.838 41.667 8.00 0.00 0.00 3.79
4577 5164 3.512329 TGATAACCGGTACTTGAGAAGCA 59.488 43.478 8.00 0.00 0.00 3.91
4578 5165 4.119442 TGATAACCGGTACTTGAGAAGC 57.881 45.455 8.00 0.00 0.00 3.86
4579 5166 4.567159 GCTTGATAACCGGTACTTGAGAAG 59.433 45.833 8.00 5.41 0.00 2.85
4580 5167 4.222145 AGCTTGATAACCGGTACTTGAGAA 59.778 41.667 8.00 0.00 0.00 2.87
4581 5168 3.767673 AGCTTGATAACCGGTACTTGAGA 59.232 43.478 8.00 0.00 0.00 3.27
4582 5169 4.113354 GAGCTTGATAACCGGTACTTGAG 58.887 47.826 8.00 5.11 0.00 3.02
4583 5170 3.118884 GGAGCTTGATAACCGGTACTTGA 60.119 47.826 8.00 0.00 0.00 3.02
4584 5171 3.195661 GGAGCTTGATAACCGGTACTTG 58.804 50.000 8.00 0.00 0.00 3.16
4585 5172 2.835764 TGGAGCTTGATAACCGGTACTT 59.164 45.455 8.00 0.00 0.00 2.24
4586 5173 2.431057 CTGGAGCTTGATAACCGGTACT 59.569 50.000 8.00 0.00 0.00 2.73
4587 5174 2.483188 CCTGGAGCTTGATAACCGGTAC 60.483 54.545 8.00 3.13 0.00 3.34
4588 5175 1.760613 CCTGGAGCTTGATAACCGGTA 59.239 52.381 8.00 0.00 0.00 4.02
4589 5176 0.541863 CCTGGAGCTTGATAACCGGT 59.458 55.000 0.00 0.00 0.00 5.28
4590 5177 0.179045 CCCTGGAGCTTGATAACCGG 60.179 60.000 0.00 0.00 0.00 5.28
4591 5178 3.386543 CCCTGGAGCTTGATAACCG 57.613 57.895 0.00 0.00 0.00 4.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.