>input_sequence_30239
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---------------------------------------ATGGCGAAGACCTACCCCGTCGTCAGCGCCGAGTACCAGGA
GGCCGTCGAGAAGGCCAGGCAGAAGCTCCGCGCCCTCATCGCCGAGAAGAATTGCTCCCCGCTCATGCTCCGCCTCGCGT
AAGCGCCTACCCCCCTCTCCTCCCCGCGCGCGTGCCGA---------GTGTTTTTATTTTTC--------GTCATGGCCT
GATCTGTCGCGTCATGCGGTCGTCGCGCAGGTGGCACTCGGCCGGGACCTTCGACGTGTCGTCCAAGACAGGCGGCCCGT
TCGGGACGATGAAGAAGCCGGCGGAGCAGGCGCACGCCGCCAACGCGGGCCTGGACATCGCCGTGCGGATGCTCGAGCCC
ATGAAGGAGGAGATCCCCACCATCTCCTACGCCGATCTCTACCAGGTTCGGCGCCAGTTTTGGTTAGATCTGGTTGGCAG
TCCCGATTCGGTCGACTGGGTGTGGTTTCTGATGATTCATTTCTCCTGCGTGTAGCTTGCGGGAGTTGTCGCCGTGGAGG
TCTCCGGTGGGCCCGTGATCCCCTTCCACCCAGGGAGGGAGGTGAGATTTCTTAACCTTGGTTAACTTTGCAGTTTCCTC
AGGGTTTTAGG-CAGGGGACTGTGTGGGTAGGTTGGTGATGCCGAGTTTAAGGCTTTTAACT------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---ACTGGCAGTACTCATGTCATGATGTGCGTACGTCTTTGGGTTGGTGGCTCTTGGAACAAGCGACTACATTAGTCTAT
GCCCGGCGGCTTATTTGTTTGACACCACCTATGTTTTTTATTATTTCGTGGAACACCACGGAGTTGTCTGATACAGTAGT
AGTACTAGCGTATGTGTTGGTCATGACGCGCGGCCTAATAAGTGGTTTTGGTGGGCGGCAATGTTTGTGCTGTCTTGACT
TGATGTGCTTGCTATCTCACATTTAGAGCTATAATATCCTCT----TACGATGATTAATTAGTTACTGTAATGTTTATTG
TCCATCACCTATTGTGGCATTCGGTTATCATTTGGTATATGCAATCTTTCTAGTCTAGATATTAGTTCTTGTTGGCTCAG
ATTTTTGTCAAGCATTCACCAAAATCGTAGTAGAATTATGCTGTTAGAGCTTCCTGCCACGAATAACTCTAGAAGGATGT
GGTTGCTATGTTCCTGATGGTAATGCCATTACAGACTTAAGTGAAATAGAAAGGGCCAAGCAAACAAAATTAATCTTATT
TTTATTCTAGTTAGAAC-TTTTTTGCGTGCAGTCGGGAAGACCATGCAGTAAAGTTAATTTTTGCGCCTAGCAGTTTTGA
TACTTTTGCTGTGATATGTGATAATCGATGAGCACTGAGTGCA-TTGGTTATAGTTTCT--TGTTGTAATTGTTTAGCTG
AGCACATTTTAAACTTAACATGTGCCTTTTACAGGACAAGCCTCAGCCCCCACCTGAGGGTCGCCTCCCTGATGCTACCA
AGGGTACCATTCTAACCCTCACAACATTTTTCTAACTTTAGAAAAGACGTA----CTATGGAACAAATATTTGTAATTAA
TACTGTTGTGAAACGATTGTAAATGGAAATCTTGCTTTGATTGCTTACTTATTTCCAATATCTGTTTGCTCACTAAAGAA
GGCTTCTTCCTTAAACTACACAGTTGAAC-ATATTCTATTTCACACATATGTGAA------GTATTAGTTATGTAGTACA
TGTATATAATTTGCGCAGTCCAGTCTATGCTAGTTTTCCCCTTTAGCAATTGTGACATGGTGTGTATGTGCATGAAAGTA
CCTTTTCCATCTCTATACTGTTTGGTTATATGGAGGCAGCTGATGGTGAACTTATGAAATTTTATTGTGTTGATTATTCT
GTTGGCT-CAAGTTGCAAGAAATCACTTG----TTACTTTCACTAATGATTTCCATTCCTTACCGTTCACCCAGGTTCTG
ACCACCTAAGGCAAGTCTTTGGCAAGCAGATGGGCTTGAGTGATCAGGATATTGTTGCCCTCTCTGGTGGCCACACCCTG
GTTAGTTTGCATATTTGCTCAATCTGCTTTCATGTTATATACCTGGATCGTTGTATGCATGCATTGACATTGTTCTCTTG
CGTTTCTC--TTTTTCTATAGGGAAGGTGCCACAAGGAGAGGTCTGGCTTTGAGGGACCCTGGACAAGGAACCCTTTGAA
GTTTGACAACTCTTACTTCACGTAAGTGGTTCTCTAGTACCTTGATTTCCCCCAACTCGGCGCATGCCATTTGTTGGTGA
TTACATAGTGAATCTGTATTTATGTTACCACAGGGAGCTTCTGAGTGGTGATAAAGAGGGACTTCTTCAGCTTCCAAGTG
ACAAAACCCTGCTGACTGACCCTGTCTTCCGCCCTCTTGTGGAGAAATATGCTGCGGTATGTCTCCCATCAGGGTCCACT
TCACTGGTTGTAGTACATATAAGCAGCACCAGGATGCTGATTATTGTTTT-CCTGTTAATTCTGGTAGGATGAGAAGGCT
TTCTTTGAGGACTACAAGGAGGCACACCTCAGGCTCTCCGAACTGGGGTGAGTGGTCGTCGTGTATTCTCTTGGGCATTG
ATAGTATCTTTCGTCAACGCCACTGTCTTATCGGTTACCATTGTGAACTGTGAATACAGGTACGCCGAAGCGTAA-----
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----------------------------------------------------------------------------
>chr4A_1_TraesCS4A01G106300
CGGCATACGAGTTTTTTCAGTGAGATCGGCAGACAAAGGAAGGCCAACGCGATCAACGTCATAGCATTAAACGTCT----
----------------------------TGTACTGCTATCGTAGGGAAGGAACCAGCGGCTGCGACGGAGAGACGGGACA
GATCAGGCCAAGCTTCACAATGAGAAACGGATCCACCAAGAGGCATCATTCATCTGCATGCTATATGGGCGAATGAAGAT
GAAAAATTAGACCAAACCTCTCGTGATGCGAAACGGATCGGTCGCAGTACACATTGCTGAT-------------------
-------------CGTTCCTAGTTCGCCAAAGACGACGGCACGCATGCACCGGCAGTCTTCTGAGTTCTGACGCTCACAT
GCACTAATCTGCACACAAGAGAAAAAGAAAAA-------GGAAATAGAAATAGAAACTTTACACTAGGGGTGAAAACTGA
AACGAAATTGCTTTTTTTTTTAGACAATGAAACGAAATTGCTGGGAAGCCGACGCGGATGGATGAGGCCAGGCACACTTC
CCGAGCAAGGCTGGGCCGGGAACAGCGGGAGAGCGTGCGTTACCGGAGGCACCAATGACGGACCCGGGTCCACTCCAGCC
GCGCCCGCACCAACCGGCTCGTGCCACGTGTCCCACCAGCCCGTGAAGCCGTGAACCGTCGCCGCTACTCGCAGACGAAG
ACCGCGGGTCTCCCAGCGAAATGACCAAAACAGCCGCACCACCTTCCTCCCTTCGCCGCAAAGCAGGGAGAAAACCGTAA
CTGCACGG-CCGATTCCCTCCTACCCCCCACTCGGCCATCACTACTCGCGTGCCTATCACGCGCGTCCAAATGGACCGCC
GCCCCCACCGCCGGATCGCCCAAGATCGACGGCCGAGAGGCGCCTTCCCAGAACCTTCCCTTGATCCCTGCGCCGGCGAT
ATAAACCCCCCGGGGAGCGTGGCTTCCATTCGCCCCATCCACCTCGCTGTCTTCTTCTTCTTCAGTTCCGCCTTCCCATC
-------CCCGCCTGATCGGAGTCTCAGCCGCGGCAGCCATGGCGAAGACCTACCCCGTCGTCAGCGCCGAGTACCAGGA
GGCCGTCGAGAAGGCCAGGCAGAAGCTCCGCGCCCTCATCGCCGAGAAGAATTGCTCCCCGCTCATGCTCCGCCTCGCGT
AAGCGCCTACCCCCCTCTCCTCCCCGCGCGCGTGCCGA---------GTGTTTTTATTTTTC--------GTCATGGCCT
GATCTGTCGCGTCATGCGGTCGTCGCGCAGGTGGCACTCGGCCGGGACCTTCGACGTGTCGTCCAAGACAGGCGGCCCGT
TCGGGACGATGAAGAAGCCGGCGGAGCAGGCGCACGCCGCCAACGCGGGCCTGGACATCGCCGTGCGGATGCTCGAGCCC
ATGAAGGAGGAGATCCCCACCATCTCCTACGCCGATCTCTACCAGGTTCGGCGCCAGTTTTGGTTAGATCTGGTTGGCAG
TCCCGATTCGGTCGACTGGGTGTGGTTTCTGATGATTCATTTCTCCTGCGTGTAGCTTGCGGGAGTTGTCGCCGTGGAGG
TCTCCGGTGGGCCCGTGATCCCCTTCCACCCAGGGAGGGAGGTGAGATTTCTTAACCTTGGTTAACTTTGCAGTTTCCTC
AGGGTTTTAGG-CAGGGGACTGTGTGGGTAGGTTGGTGATGCCGAGTTTAAGGCTTTTAACT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ACTGGCAGTACTCATGTCATGATGTGCGTACGTCTTTGGGTTGGTGGCTCTTGGAACAAGCGACTACATTAGTCTAT
GCCCGGCGGCTTATTTGTTTGACACCACCTATGTTTTTTATTATTTCGTGGAACACCACGGAGTTGTCTGATACAGTAGT
AGTACTAGCGTATGTGTTGGTCATGACGCGCGGCCTAATAAGTGGTTTTGGTGGGCGGCAATGTTTGTGCTGTCTTGACT
TGATGTGCTTGCTATCTCACATTTAGAGCTATAATATCCTCT----TACGATGATTAATTAGTTACTGTAATGTTTATTG
TCCATCACCTATTGTGGCATTCGGTTATCATTTGGTATATGCAATCTTTCTAGTCTAGATATTAGTTCTTGTTGGCTCAG
ATTTTTGTCAAGCATTCACCAAAATCGTAGTAGAATTATGCTGTTAGAGCTTCCTGCCACGAATAACTCTAGAAGGATGT
GGTTGCTATGTTCCTGATGGTAATGCCATTACAGACTTAAGTGAAATAGAAAGGGCCAAGCAAACAAAATTAATCTTATT
TTTATTCTAGTTAGAAC-TTTTTTGCGTGCAGTCGGGAAGACCATGCAGTAAAGTTAATTTTTGCGCCTAGCAGTTTTGA
TACTTTTGCTGTGATATGTGATAATCGATGAGCACTGAGTGCA-TTGGTTATAGTTTCT--TGTTGTAATTGTTTAGCTG
AGCACATTTTAAACTTAACATGTGCCTTTTACAGGACAAGCCTCAGCCCCCACCTGAGGGTCGCCTCCCTGATGCTACCA
AGGGTACCATTCTAACCCTCACAACATTTTTCTAACTTTAGAAAAGACGTA----CTATGGAACAAATATTTGTAATTAA
TACTGTTGTGAAACGATTGTAAATGGAAATCTTGCTTTGATTGCTTACTTATTTCCAATATCTGTTTGCTCACTAAAGAA
GGCTTCTTCCTTAAACTACACAGTTGAAC-ATATTCTATTTCACACATATGTGAA------GTATTAGTTATGTAGTACA
TGTATATAATTTGCGCAGTCCAGTCTATGCTAGTTTTCCCCTTTAGCAATTGTGACATGGTGTGTATGTGCATGAAAGTA
CCTTTTCCATCTCTATACTGTTTGGTTATATGGAGGCAGCTGATGGTGAACTTATGAAATTTTATTGTGTTGATTATTCT
GTTGGCT-CAAGTTGCAAGAAATCACTTG----TTACTTTCACTAATGATTTCCATTCCTTACCGTTCACCCAGGTTCTG
ACCACCTAAGGCAAGTCTTTGGCAAGCAGATGGGCTTGAGTGATCAGGATATTGTTGCCCTCTCTGGTGGCCACACCCTG
GTTAGTTTGCATATTTGCTCAATCTGCTTTCATGTTATATACCTGGATCGTTGTATGCATGCATTGACATTGTTCTCTTG
CGTTTCTC--TTTTTCTATAGGGAAGGTGCCACAAGGAGAGGTCTGGCTTTGAGGGACCCTGGACAAGGAACCCTTTGAA
GTTTGACAACTCTTACTTCACGTAAGTGGTTCTCTAGTACCTTGATTTCCCCCAACTCGGCGCATGCCATTTGTTGGTGA
TTACATAGTGAATCTGTATTTATGTTACCACAGGGAGCTTCTGAGTGGTGATAAAGAGGGACTTCTTCAGCTTCCAAGTG
ACAAAACCCTGCTGACTGACCCTGTCTTCCGCCCTCTTGTGGAGAAATATGCTGCGGTATGTCTCCCATCAGGGTCCACT
TCACTGGTTGTAGTACATATAAGCAGCACCAGGATGCTGATTATTGTTTT-CCTGTTAATTCTGGTAGGATGAGAAGGCT
TTCTTTGAGGACTACAAGGAGGCACACCTCAGGCTCTCCGAACTGGGGTGAGTGGTCGTCGTGTATTCTCTTGGGCATTG
ATAGTATCTTTCGTCAACGCCACTGTCTTATCGGTTACCATTGTGAACTGTGAATACAGGTACGCCGAAGCGTAAGAGG-
-TGTCTACTACTGCTGCTACTATGTGTGACCAGGGTGATCTTGTTCTGCTTCTAGACTAGGGGTCAGTGTGAACCAGCAG
ACTTTTAAGTAATCATCTCTGTAATAATGTCCGTTGGCTTAAGGCCATACCTTGTACGCTGTCAGTGGTTTGGTGTGCCG
TTGCATTCG-----------------GATCTATCGTATGAAATGCAGCAGTGACTTATCATGGTACCTTGCGCATGATCT
TTATGTGCATTTTATTTTTGAGATGCCCTTGATTTCAGTAGCAATACTGCTTAGGTTTCGTTACAGGATCAAAGATACTG
AAAACTGCATGGTTGGGATAGCTATTGTTGTTTGCCGACTTTTCACATTGTAAGAGCT----------------------
-----------TGCTGGTCGAGGCCGTCTCGTCTCAACCATCCCCAGCCCCCCTGGGTCGCTCGCACGAGCGACTCTGGA
GACCACCCTGCCACCACCTACAAAGCTTG-----CCACCTCCGCCGGAGAAGCCATCGGTGTTGACGATGACTGTGGCTT
CCCTTGCTATCCCTTTGTTCCCTCCCCATCACCGATGGGTGACTAACACCTCGTCGATTTGCAGCGCACTCGCCAGCTCC
GCCTCTGCTGTGGCGTTGACTTGGTGTGCGGCGATGGGCCTGCAGCGTTGGGCATGATTACATCTCTCTATGGTGCCGGC
CTTGCCGGGCTCCATCTCTAGCCATGGTCGTGTGTGTGGAGTTAGCTAGAGCGTCTGGATCCGTGCAAGGGCCATAGGTC
GCGACCACCCAACAAT----------------------------------------------------------------
--------------------------------------------------------------------------------
GGTCTGTAAAGGCCGCAATGGTCCGGGGCATGGTTTTGGTGAATAGGATTCGATCAAGGCAAGTGACATGAGAAGCAATC
TATGGACCTGGAGGATATGGTTGTACGGCAACGGCAACGGGGGAGGGACTTCTGACCCAATACATGTAGCTGCGGGAATT
TTGGAAAAATGGTGGCGACAACAGATTGACTTCGATGTGGTGATGCTTCTCAAGTACCGGTTATCAAGCTCCAGGG
>chr4D_41
----------------------------------------AGGCCAAGACGATCAACGTCATAGCATTAAACGTCTTGGC
CGGGGGTTTCGACAGCTATGCCAACAAGTGTACTGCTATCGTAGGGTAGGAACCAGCGGCTACTACGGAGAGACGGGACA
GATGAGGCCAAGCTTCACAATGAGAAACGGATCCACCAAGAGGCATCATTCATCTGCATTCTATATGGGCTAACGAAGAT
GAAAAATTAGACCAAACCTCTGGCGATGCGAAACGGATCGGTCGCAGCGGCACCGCGTACACACCATTGGTAGTCTTCTC
ACGCTCACGCTCACGTTCGTAGTTCGCCAAAGACGACGACGCACATGCACCGGTAGTCTTCTCAA-------GCTCACGT
GCACTAATCTGCACACAAGAGAAAAAGAAAAAAAAGAAAGGAAATAGAAGC-----------------------------
---------------------------TGAAACGAAATTGCTGGGAGGCCGACGCGGATGGATGAGGCCAGGCACACTTC
CCGAGCAAGGCTGGGCCGGGGATAGCGGGGCAGCGTGCGTTACCGGAGGCAGCAACGACGGACCCGGGTCCACTCCAGCC
GCGCCCGTACCAACCGGCTCACGCCACGTGTCCCACCAGCCCGTGAAGCCGTGAACCGTTGCCGCTACTCGCAGACGAAG
ACCGCGGGGCTCCCGGCGAAATGACCAAAACAGCCGCACCACCTTCCACCTTTCGCCGCAAAGCAGGGACAAAATCGTAA
CTGCACGG-CCGATTCCCTCCTCCCCCCCACTTGGCCATCACTGCTCGCGTGCCTGTCACGCGCGTCCAAATGGACCGCC
GCCCCCACCGCCGGATCGCCCAAGATCGACGGCCGAGAGGCGCCCTCCCAGAACCTTCCCTTGACCCCTGCGCCGGCGAT
ATAAACCCCCGGGGGAGCGTGGCTTCCATTCGCCCCATCCACCTCGCTGTCTTTTTCTTCACTTCCCCCTCGCCTTCTCC
TGCCCTCCCCTCCTGATCGGAGTCTCAGCCGCGGCAGCCATGGCGAAGACCTACCCCGTTGTCAGCGCCGAGTACCAGGA
GGCCGTCGAGAAGGCCAGGCAAAAGCTCCGCGCCCTCATCGCCGAGAAGAACTGCTCCCCGCTCATGCTCCGCCTCGCGT
AAGCGCC---CCCCCTCTCCTACCCGCGCGCGTTCGGATTATCGACGGAGTTTTT-TTTTTTTTGCCTTTTTCATGGCCT
GATCTGTT----------GTCGTCGCGCAGGTGGCACTCCGCTGGGACCTTCGACGTGTCGTCCAAGACAGGCGGCCCGT
TCGGGACGATGAAGAAGCCGGCGGAGCAGGCGCACGCCGCCAACGCGGGCCTGGACATCGCCGTGCGGATGCTCGAGCCC
ATCAAGGAGGAGATCCCCACCATCTCCTACGCTGATCTCTACCAGGTTCGACGCGAGTTC-GGTCAGATCTGGTTGACAG
TACCCATTCGGTCCACTGAATGTGGTTTCTGATGATTCATTTCTCCTGCGTGCAGCTTGCGGGAGTTGTCGCGGTGGAGG
TGTCCGGTGGGCCCGTGATCCCCTTCCACCCAGGGAGGGAGGTGATATTTCTTAACCTTGGTTAACTTTGCATTTTCCTC
AGGGTTTTAGTCCAGGGGACAGTGTGGGTAGGTTGGTGGTGCCGAGTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AACTAGAAGTATTCTTGTCAGCATGTGATTTCGTGTTTGGGTTGGTGGCTCTTGGTACAAGCGACTACATTAGTCTAT
GTCCGGCGGCTAATTTGTTTGACACCACCTATA-TTTTTATTATTTCGTGGAACACCACGGAGTTGTATGAT--------
---------------------CCTGACGCTCGGCCTAATTAGTGGTTTTGGTGGGCGGCAATGTTTGTGCTGTCTTGACT
TGATGTGCTTGCTATCTCACATCTAGAGCTATAATATCCTCTAGTGTACGACAATTAATTAGTTACTGTAATGTTTATTG
TACATCACGTATTGTGGCATTCAGTTCTCATTCTGTATATGCAATCTTTCTAGTCTAGGTATTAGTTCTTGTTGGCTCAC
ATTTTTGTCAAGCATTCACCAAAATCGTAGTAGAATTATGCT----GAGCTTCCTGCCACGAATAACTCTAGAAGGATGT
GGTTGCTATGTTCCTGATGGTAATGCCATTACAGGCTTCAATCAAATAGAAAGGGCCAAGCAAACAAAATTAATCTTATT
TTTATTCTAGTTAGAACTTTTTTTGCGTGCAGTCGGGAAGACCA----------------------------AGTTATGA
TACTTATGCTGTGATATGTGATAATCGATGAGCACTGAGTGCTCTTGGTTATAGTTTTT--TTTTGCAATTGTTTAGCTG
AGCACATTTTAAACTTAACATGTGCCTTTTACAGGACAAGCCTCAGCCCCCACCTGAGGGTCGCCTCCCTGATGCTACCA
AGGGTACCATTCTAACCCTCACAACATTTTTCTAACTATAGAAAAGGCGTATTCACTATGGAACAAATATTTATAATTAA
TACTGTTGTGAAACAATTGTAAATGGAAATCATGCTTTGATTGCTTACTTATTTCCAATATCCGTTTGCTCACTATAGAA
GGCTTCTTCCTTAAACTACGCAGTTGAACCATATTCTGTTTCACTCATATATGAA------GTATTAATTATGTAGTACA
TGTATACAATTTGCGCAGTCCAGTCTATGCTAGTTTTCCCCTTTAGCAATTGTGACATGGTGTGTATGTGCATGAAAGTA
CCTTTT--------------------------------------------------------------------------
-----------------------------------ACTTTCACTAATGATTTCCATTCCTTACCGTTCACCCAGGTTCTG
ACCACCTAAGGCAAGTCTTCGGCAAGCAGATGGGCTTGAGTGATCAGGATATTGTTGCCCTCTCTGGTGGCCACACCCTG
GTTAGTTTGCACATTTGCTCAATCTGCTTTCATATTATATACCTGGATCGTTGTATGCATGCATTGACATTGTTTTCTTG
TGTTTTTC--TTTTTCTATAGGGAAGGTGCCACAAGGAGAGGTCTGGCTTTGAGGGACCCTGGACAAGGAACCCTTTGAA
GTTTGACCACTCTTACTTCACGTAAGTGGTTCACTAGTACCTTGATTTCCCCGCACTCGGCGCACGACATTTGTTGGTGA
TTACATAGTGAATCTGTATTTATGTTACTACAGGGAGCTTCTGAGTGGTGACAAAGAGGGGCTTCTTCAGCTTCCAAGTG
ACAAAACCCTGCTGACTGACCCTGTCTTTCGCCCTCTTGTGGAGAAATATGCTGCGGTATGTCTCCCATCAGCGTCCACT
TCACTGGTTGTAGTAGATATAAGCAGCAACAGGATGCTGATTATTATTTT-CCC-GTAATTCTGATAGGACGAGAAGGCT
TTCTTTGAGGACTACAAGGAGGCACACCTCAGGCTCTCCGAACTGGGGTGAGTGGTCGTCGTGTATTCTCTTGGGCATTG
ATAGTATCTTTCGTTAACGCGACTGTCTTATCGGTTACCCTTTTGAACTGTGAATACAGGTACGCTGAAGCATAAGAGGC
GTGTCTACTACTGCTGCTACTATGTGCGATCAGAGTGATCTTGTTCTGCGTCTAGACTAGGGGTCAGTATGGACCAGCAG
ACTGCTAAGTAATCTTCTCCGTAATAATGTCCGTTGGCTTGAGGCCATACCTTGTACGCTGTCAGTGGTTTGGTGTGCCG
TTGCACTCGGTTGCCT-TATGCCACAGATCTATCGTATGAAATGCAGTAGTGACTTTGAATGGTACCTTGCGCATGATCT
TTATGTGCATTTTATTTTTGAGATGCCCTCGATTTCAGTCGCAATATTGCTTAGGTTTCGTTACAGGATCAAAGATACTG
AAAACCGCATTGTTGGGATAGCTATTGTTGTTTGCCGACTCTTCACATTGTCAGCAACCCAATTTTATGGCGTTGAAGTT
ATGTCTAGCTCTGCTGGTCGAGACCGTCTCCGG---------------CCCCCCGGGTCGCTCGCACGGGCGACTTTGGA
TGCCACCAAGCTCGCCGCCGCCACCCCAGCCGACCCACCGTCGCCGGAGAAGCAATCGGTGTTGACGATGGCTC------
CCCTTGCTATCCCTTTGTTCCCTCCCCATAACCTATGGTTGTCTTCCACCTCGTCGATTTGCAGCGCACTCGCCAGATCC
GCCTCTGGTGTGGCGTTGACTTGGTGTGCAACGAC-GGCCTGCAGCGTTGGGCATGATCACATCTCGCCATGGTGCCTGT
CTTGCCGGGCTCCTTCTCTAGCCATGGTTGTGTGTGTGGAGTTAGTTGGAGCGTTTGGATCCGTGCAAGCGCCAGAGGTC
GTGACCACCCAACAGTGGATTTGCCCCACTTTACAAGGGGTTGGATGATTTGCCCTTTGATTGTCTCAATGACAGTGGCC
CCGGGCCCCACCCGGTAGCCTCTCAGGGGGGGCAAATGATCCAATGGAGAAGTAAAGTGGGGCAAAAGATCCAATTTCTC
GGTCGGTGAAGGCCGCGACGGTCCGGGGCATGGTTTTGGTGAATAGGATTCGATCAAGGCAAGTGACATGAGAAGCAATC
TATGGACATGGAGGATATGGTTGTGCGGCAGCG------GGGGAGGGACTTCTGACCCAGCACATGTAGCTGCGGGAAT-
----------------------------------------------------------------------------
>chr4B_408
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GA
AACGAAATTGCTTTTTTTTTAGGA-AATGAAACGAAATTGCTGGGAGGCCGACGCGGATGGATGAGGCCAGGCACACTAC
CCGAG--AGGCTGGGCCGGGAACAGCGGGAGAGCGTGCGTTACCAGAGG---CAGTGACGGACCTGGGTCCACTCCAGCC
GCGCCGCCACCAACCGGACCGCGCCACGTGTCCCACCAGCCCGTGAAGCCGTGAACCGTCGCCGCTACTCGCAGACGAAG
ACCGCGGGGCTCCCCGCGAAATGACCAAAACAGCCTCACAACCTTCCTCCTTTCGCCGCAAAGCAGGGACAAAATCGTAA
CTGCACGACCCGATTCCCCCCTACCCCCCACTTGGCCATCACTGCTCGCGTGCCTATCACGCGCGTCCAAATGGACCGCC
GTTCCCACCGCC-GATCACCCCAGATCAACGGCCAAGAGCCGCCCTCCCAGAACCTTCCCTTGTCCCCTGCACCGGCGAT
ATAAACCCCCGGGGGAGCGTGGCTTCCATTCGCCCCATCCACCTCGCTGCCTTCTTCTTCAGTTACCCCTCGCCTTCTCC
-------CCCGCCTGATCGGAGTCTCGGCCGCGGCAGCCATGGCGAAGACCTACCCCGTCGTCAGCGCCGAGTACCAGGA
GGCCGTCGAGAAGGCCCGGCAAAAGCTCCGCGCCCTCATCGCCGAGAAGAACTGCTCCCCGCTCATGCTCCGCCTCGCGT
AAGCGCCTACCCACCTCTCCTCCCCGCGCGCGTGCCGA---------GAGTTTTT-TTTTCC--------TTCATGACCT
GATCTGTCGCGTCACGCGCTCGTCGCGCAGGTGGCACTCGGCTGGGACCTTCGACGTGTCGTCCAAGACCGGCGGCCCGT
TCGGGACGATGAAGAAGCCGGCGGAGCAGGCGCACGCCGCCAACGCGGGCCTGGACATCGCCGTGCGGATGCTCGAGCCC
ATCAAGGAGGAGATCCCCACCATCTCCTACGCCGATCTCTACCAGGTTCGACGCGAGTTC-GGTCAGATCTGGTTGACAG
TACCCATTCGGTCGACTGGATGTGGTTTCTGATGATTCATTTCGTCTGCGTGTAGCTTGCGGGAGTTGTCGCCGTGGAGG
TGTCTGGTGGGCCCGTGATCCCCTTCCACCCAGGGAGGGAGGTGAGATTTCTTAACTTTGGTTAACTTTGCAGTTTCCTC
AGGGTTTTAGG-CAGGGGACAGTGTGGGTAGGTTGGTGGTGCCGAGTTTAAGGCTAGTCATAGTGGGAGTAAATTAGCTA
GTAACATAGCGCACTTCAAGAAAAGTTTGCTTACGTGGCATATAGTTAATGAGAAGTGGTAACATAATATGTTACTGTAA
CATAGCGCTTCCCAAGACAAGATGAGTCTACAAACTAATAAATGAAGTCCTCTATGACACTAGTACTATGTTACTTTGCA
CTATAAAGATAGTAACTTAGACTAGTGTCATATGCATGACACTAGTATAAGTTACTCCCCACTATGACCAGCCTAAGGCT
TTAACTAGCAATATTCTTGTCATCATGTGATTTCGTGTTTGGGTTGGTGGCTCTTGGTACAAGCGACTATATTAGTCTAT
GTCCGGCAGCAAATTTGTTTGACACCACCTATATTTTTTATTATTTCGTGGAACACCACGGAGTTGTATGATACTACAGT
AGTACTAGCCTATGTGTTGATCCTGACGCGCGGCCTAATAAGTGGTTTTGGTGGGCGGCAATGTTTGTGCCGTCTTGACT
TGATGTGCTTGCTATCTCACATTTAGGGCTATAATATCCTCT----CACGATAATTAATTAGTTACTGTAATGTTTATTG
TACATCACCTATTGTGGCATTCAGTTATCATTCTTTGTATGCAATCTTTCTAGTCTAGGTATTA---CTTGTTGGCTCAC
ATTTTTGTCAAGCATTTACCAAAATAGTAGTAGAATTATGCTGTTAGAGCTTCCTGCCACGAATAACTCTAGAAGGATGT
GGTTGCTATGTTCCTGATGGTAATGCCATTACAGGCTTCAATGAAATAGAAAGGGCCAAGCAAACAAAATTAATCTTACT
TTTGGTCTAGTTAGAAC-TTTTTTGCGTGCAGTCGGGAAGACCATGCAGTAAAGTTAATTTTTCCGCCTAGCAGTTTTGA
TACTTACGCTGTGATATGTGATAATCGATGAGTACTGAGTGCT-TTGGTTAATAGTTTTTCTTTTGTAATTGTTTAGCTG
ACCATATTTTAAACTTAACATGTGCCTTTTACAGGACAAGCCTCAGCCCCCACCTGAGGGTCGCCTCCCTGATGCTACCA
AGGGTACCATTCTAACCCTCACAACATTTTTCTAACTATAGAAAAGACGTATTCAATATGGAACAAATATTTATAATTAA
TACTGTTGTGAAACGATTGTGAATGGAAATCTTGCTTTGATTGCTTACTTATTTCCAATATCCGTTTGCTCACTAAAGAA
GGCTTCTTCCTTAATCTACACAGTTGAACCATATTCTGTTTCACACATATATGAAGTACTCGTATTAATTATGTACTACA
TGTATACAATTTGCGCATTCCAATCTATGCTAGTTTTCCCTTTTAGCAATTGTGACATGGTGTGTTTGTGCATGAAAGTG
CCTTTTCCATCTGTATAATGTTTGGTTATATGGAGGCGGCTGATGATTAACTTATGAAATTTTATTGTGTTGATTATTCT
GTTGGATCCAAGTTGCAAGAAATCACTTTTTTTTTACTTTCATTACTGATTTCCATTCCTTACCGTTCACCCAGGTTCTG
ACCACCTAAGGCAAGTCTTCGGCAAGCAGATGGGCTTGAGTGATCAGGATATTGTTGCCCTCTCTGGTGGCCACACCCTG
GTTAGTTTGCATATTTGCTCAATCTGCTTTCATATTATATACCTGGATCGTAGTATGCATGCATTGACATTGTTTTTTTT
TTTGCTTTTTTTTTTCTATAGGGAAGGTGCCACAAGGAGAGGTCTGGCTTTGAGGGACCCTGGACAAGGAACCCTTTGAA
GTTTGACAACTCTTACTTCACGTAAGTGGTTCTCTAGTACCTTGATTTCC-CCAACTTGGCGCACGATATCTGTTGGTGA
TTACATAGTGAATCTGTATTTATGTTATCACAGGGAGCTTCTGAGTGGTGACAAAGAGGGGCTTCTTCAGCTTCCAAGTG
ACAAAACCCTGCTGACTGACCCTGTCTTTCGCCCTCTTGTGGAGAAATATGCTGCGGTATGTCTCCCATCACTGTTCACT
AAATTGCTT---GTAGAGATAAGCAGCGCCAGGATGCTGATTATTATTTTACCC-TTAATTCTTGTAGGATGAGAAGGCT
TTCTTCGAGGACTACAAGGAGGCACACCTCAGGCTCTCGGAACTGGGGTGAGTGGTCGCTGTGTATTCTCTCGGTCATTG
GTAGTTTCTTTTGTCAACGCGACTGTCTTATCAGTTACCCTTGT-AACTGTGATTACAGGTACGCCGAAGCGTAAGAGGC
GTGTCTACTACTGCTGCTACTATG--CGATCAGGGTGATCTTGTTCTGCGT-TAGACTAGGGGTCAGTGTGAACCTGCAG
ACTGCTAAGTAATCATCTCTGTAATAATGTCCGTTGGCTTGAGGCCATACCTTGTACTCTGTCAGTGGTTTG-TGTGCCG
TTGCACTCGATCGCCTTTATGCCACAGATCTATCGAATGAAATGCAGTAGTGACTTTTCATGGTACCTTGCATGATCT-T
TTATATGCATTTTATTTTTGAGATGCCTTGCTTTC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-------------------------------
----------------------------------------------S--------------S-S----------------
---S-------------------------------------------------------S----------S--S------
---------------------S-S-----------------------SSSSSSSSSS-SSS-------------------
------------------S-------------------S-S-S----------S--------S-SSSSSSSS------S-
-------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS--
--------------------SS--S---------------------S---------------------------------
---------------------------------------------------S----------------------------
---------------------S----------------------------------------------------------
--------S-----S-----------------------------------S------------------S----S-----
--------------------------------S----------S------------------------------------
--------------------------------------------S-------------------S---------------
----------S-------------------------------------------------SSSSSSS--S-SSSSS-SS-
--------------------------------------------------------------------------------
---------------------S-----------------------------S----------------------------
------------------------------------------------S------S--------------S---------
--------------S---------------------------S-------------------------------------
--------------------------------------------------------------------------------
--S-----------------------------------------------S---S----SS---S-----------S---
-S--S--------------S------------------------------------------------------------
-S------------------------------------------------------------------------------
--------------------S-----------------S----------------SS-S-SS------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S------S--S------S-----SS-S---S--------------------S----------------------
-S---------S--------------------S----------------------------------S------SSS---
---------S---------S--S---------------------------------------------------------
----------------------------------------------------S---------------------------
-S--------------------S---------SS------------------------S--------------------S
--------------------------------------------------------------------------------
----------------------------------S---S-S---------------------------------------
---------------------------------------------------------------S----------------
-----S------------------------------------S--------------S----S-----------------
--------------------------------------------------------------------------------
-------------------------------------S----------------------------------S-------
--------------------------------------------------------------S-----------------
-------------------------------------S------------S----------------S------------
------S-------------------------------------------------------------------------
------------S----S-------------------S-------S-S--------------------------------
-----S----------------------S---------------------------------------------------
-------------------S------------------------------------------------------------
---------------------------------S----------------------------------------S-----
S----S--------------------------------------------------------------------------
----------------------------------------------------------------S-S-------------
---------------------------------------------------S--------S-------------------
----------------------------S-------------------------------------------S-------
---------------S-----------------------------S-------SS-------------------------
--------------------------------------------------------------------------------
--------------------S------------------S----------------------------------------
--------------------------S--S-------------------S------------------------------
---SS-----------------------------------S---------------------------------------
-----S-----------------------------------------S--------S-----------------------
-----------------------------S---------S------S---------------------------------
-----S----S-----------------------------S----------S--SSSS----------------------
----------------------S-------SSSSSSSSSSSSSSSSSS-----S--------------S------S----
SS-----SS--SSS-SS-SS-S-SS-SS-----------SS------------S----------------S--SSSSSSS
-----------------------------S---S----S--S--SS------------------------------S---
-------S---------------------SS---SS----------------------S-------S-S--------S-S
-------------S--------------S----------------S-S------S--------------S----S-----
-S------------S-----------------------------------------------------------------
--------------------------------------------------------------------------------
----S--S--------S-S-------------------------------------------------------------
-------S----------------S-----S--SSSSSS--------------------SS------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_387
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CACCGGCAGTCTTCTGAGTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>reverse_1443
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGGAGGAGATCCCCACCA----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>forward_1039
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CTTCAGTTCCGCCTTCCCAT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>reverse_2183
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------ATGACGCGCGGCCTAATAAG--------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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----------------------------------------------------------------------------
>forward_2148
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TGGAACACCACGGAGTTGTC------------
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----------------------------------------------------------------------------
>reverse_3709
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------CCGCCCTCTTGTGGAGAAAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
>forward_3168
--------------------------------------------------------------------------------
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----------------------------TATGGAGGCAGCTGATGGTG--------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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>reverse_4815
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------ATGGTCTGTAAAGGCCGCAA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------
