Multiple sequence alignment - TraesCS4A01G103800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G103800 chr4A 100.000 3771 0 0 1 3771 117287184 117283414 0.000000e+00 6964.0
1 TraesCS4A01G103800 chr4A 75.173 721 121 39 1768 2458 117334739 117334047 1.710000e-73 287.0
2 TraesCS4A01G103800 chr4A 76.978 278 48 10 1158 1426 117337877 117337607 1.090000e-30 145.0
3 TraesCS4A01G103800 chr4B 87.861 2595 141 76 833 3366 428457974 428460455 0.000000e+00 2887.0
4 TraesCS4A01G103800 chr4B 87.411 421 18 5 3382 3771 428460515 428460931 5.740000e-123 451.0
5 TraesCS4A01G103800 chr4B 77.395 522 86 21 1568 2086 428410134 428410626 7.970000e-72 281.0
6 TraesCS4A01G103800 chr4B 77.174 276 44 12 1158 1426 428409757 428410020 3.930000e-30 143.0
7 TraesCS4A01G103800 chr4B 93.478 92 3 1 742 830 428457791 428457882 2.360000e-27 134.0
8 TraesCS4A01G103800 chr4D 89.470 1339 76 32 1931 3236 348302208 348303514 0.000000e+00 1631.0
9 TraesCS4A01G103800 chr4D 91.150 1096 51 25 833 1918 348301037 348302096 0.000000e+00 1445.0
10 TraesCS4A01G103800 chr4D 83.091 550 34 17 3258 3771 348303562 348304088 2.670000e-121 446.0
11 TraesCS4A01G103800 chr4D 76.281 527 82 30 1568 2092 348296019 348296504 1.350000e-59 241.0
12 TraesCS4A01G103800 chr4D 85.500 200 13 13 641 830 348300762 348300955 1.070000e-45 195.0
13 TraesCS4A01G103800 chr4D 76.056 284 45 13 1158 1426 348295631 348295906 3.950000e-25 126.0
14 TraesCS4A01G103800 chr2A 90.706 538 31 6 113 639 17837103 17836574 0.000000e+00 699.0
15 TraesCS4A01G103800 chr1A 86.749 566 51 8 95 648 266015183 266014630 3.220000e-170 608.0
16 TraesCS4A01G103800 chr7D 92.737 358 24 2 283 639 505144659 505144303 2.010000e-142 516.0
17 TraesCS4A01G103800 chr7D 91.899 358 27 2 283 639 505352530 505352174 2.020000e-137 499.0
18 TraesCS4A01G103800 chr7D 78.061 392 78 7 251 639 471322932 471323318 1.350000e-59 241.0
19 TraesCS4A01G103800 chr7D 86.517 89 9 3 2166 2251 564622393 564622481 1.120000e-15 95.3
20 TraesCS4A01G103800 chr3D 90.753 292 23 3 349 639 40019469 40019181 1.640000e-103 387.0
21 TraesCS4A01G103800 chr6D 87.850 321 22 8 66 379 45630003 45630313 9.960000e-96 361.0
22 TraesCS4A01G103800 chr7A 80.052 386 75 2 255 639 561715168 561714784 6.170000e-73 285.0
23 TraesCS4A01G103800 chr7B 77.889 398 73 10 248 639 524603409 524603021 2.260000e-57 233.0
24 TraesCS4A01G103800 chrUn 74.203 345 58 22 2167 2483 329364590 329364249 8.560000e-22 115.0
25 TraesCS4A01G103800 chrUn 74.203 345 58 22 2167 2483 341935602 341935261 8.560000e-22 115.0
26 TraesCS4A01G103800 chr5A 80.986 142 24 3 420 559 681000789 681000929 3.980000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G103800 chr4A 117283414 117287184 3770 True 6964.000000 6964 100.000000 1 3771 1 chr4A.!!$R1 3770
1 TraesCS4A01G103800 chr4A 117334047 117337877 3830 True 216.000000 287 76.075500 1158 2458 2 chr4A.!!$R2 1300
2 TraesCS4A01G103800 chr4B 428457791 428460931 3140 False 1157.333333 2887 89.583333 742 3771 3 chr4B.!!$F2 3029
3 TraesCS4A01G103800 chr4B 428409757 428410626 869 False 212.000000 281 77.284500 1158 2086 2 chr4B.!!$F1 928
4 TraesCS4A01G103800 chr4D 348300762 348304088 3326 False 929.250000 1631 87.302750 641 3771 4 chr4D.!!$F2 3130
5 TraesCS4A01G103800 chr2A 17836574 17837103 529 True 699.000000 699 90.706000 113 639 1 chr2A.!!$R1 526
6 TraesCS4A01G103800 chr1A 266014630 266015183 553 True 608.000000 608 86.749000 95 648 1 chr1A.!!$R1 553

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
556 567 0.035343 GACTTGGGTAGGTTCTGGCC 60.035 60.0 0.0 0.0 0.00 5.36 F
1082 1199 0.036105 TGTGCAGTGATGTAGCCTGG 60.036 55.0 0.0 0.0 0.00 4.45 F
1334 1488 0.325933 TCTGCACAGATCAAGGGGTG 59.674 55.0 0.0 0.0 31.41 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1616 1786 1.377333 GTACCAAGCTGGCCTGTCC 60.377 63.158 11.69 0.00 42.67 4.02 R
1918 4642 1.520590 CACCGACAAAATTTTGCACCG 59.479 47.619 26.94 24.54 41.79 4.94 R
3271 6358 0.390472 CTCCCTGGAGCTCGTTGAAC 60.390 60.000 7.83 0.00 35.31 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 3.581755 TCGTTGATCGACCTTAAGTTGG 58.418 45.455 7.54 0.00 44.01 3.77
29 30 3.256383 TCGTTGATCGACCTTAAGTTGGA 59.744 43.478 7.54 0.00 44.01 3.53
30 31 3.367025 CGTTGATCGACCTTAAGTTGGAC 59.633 47.826 7.54 0.00 42.86 4.02
31 32 3.604875 TGATCGACCTTAAGTTGGACC 57.395 47.619 0.97 0.00 0.00 4.46
32 33 3.170717 TGATCGACCTTAAGTTGGACCT 58.829 45.455 0.97 0.00 0.00 3.85
33 34 4.346730 TGATCGACCTTAAGTTGGACCTA 58.653 43.478 0.97 0.00 0.00 3.08
34 35 4.960469 TGATCGACCTTAAGTTGGACCTAT 59.040 41.667 0.97 0.00 0.00 2.57
35 36 4.996788 TCGACCTTAAGTTGGACCTATC 57.003 45.455 0.97 0.00 0.00 2.08
36 37 4.346730 TCGACCTTAAGTTGGACCTATCA 58.653 43.478 0.97 0.00 0.00 2.15
37 38 4.159135 TCGACCTTAAGTTGGACCTATCAC 59.841 45.833 0.97 0.00 0.00 3.06
38 39 4.679905 CGACCTTAAGTTGGACCTATCACC 60.680 50.000 0.97 0.00 0.00 4.02
39 40 3.522343 ACCTTAAGTTGGACCTATCACCC 59.478 47.826 0.97 0.00 0.00 4.61
40 41 3.431766 CCTTAAGTTGGACCTATCACCCG 60.432 52.174 0.97 0.00 0.00 5.28
41 42 1.946984 AAGTTGGACCTATCACCCGA 58.053 50.000 0.00 0.00 0.00 5.14
42 43 2.176247 AGTTGGACCTATCACCCGAT 57.824 50.000 0.00 0.00 35.50 4.18
43 44 2.478292 AGTTGGACCTATCACCCGATT 58.522 47.619 0.00 0.00 32.73 3.34
44 45 2.434702 AGTTGGACCTATCACCCGATTC 59.565 50.000 0.00 0.00 32.73 2.52
45 46 1.420430 TGGACCTATCACCCGATTCC 58.580 55.000 0.00 0.00 32.73 3.01
46 47 1.343580 TGGACCTATCACCCGATTCCA 60.344 52.381 0.00 0.00 34.87 3.53
47 48 1.766496 GGACCTATCACCCGATTCCAA 59.234 52.381 0.00 0.00 29.65 3.53
48 49 2.372172 GGACCTATCACCCGATTCCAAT 59.628 50.000 0.00 0.00 29.65 3.16
49 50 3.581332 GGACCTATCACCCGATTCCAATA 59.419 47.826 0.00 0.00 29.65 1.90
50 51 4.041198 GGACCTATCACCCGATTCCAATAA 59.959 45.833 0.00 0.00 29.65 1.40
51 52 5.455612 GGACCTATCACCCGATTCCAATAAA 60.456 44.000 0.00 0.00 29.65 1.40
52 53 5.621193 ACCTATCACCCGATTCCAATAAAG 58.379 41.667 0.00 0.00 32.73 1.85
53 54 5.003804 CCTATCACCCGATTCCAATAAAGG 58.996 45.833 0.00 0.00 32.73 3.11
54 55 3.290948 TCACCCGATTCCAATAAAGGG 57.709 47.619 0.00 0.00 44.17 3.95
55 56 2.847449 TCACCCGATTCCAATAAAGGGA 59.153 45.455 5.23 0.00 41.26 4.20
57 58 3.632145 CACCCGATTCCAATAAAGGGAAG 59.368 47.826 5.23 0.00 46.85 3.46
58 59 2.623416 CCCGATTCCAATAAAGGGAAGC 59.377 50.000 0.00 0.00 46.85 3.86
65 66 6.432403 TTCCAATAAAGGGAAGCAAATTGT 57.568 33.333 0.00 0.00 39.44 2.71
66 67 6.036577 TCCAATAAAGGGAAGCAAATTGTC 57.963 37.500 0.00 0.00 0.00 3.18
67 68 5.541868 TCCAATAAAGGGAAGCAAATTGTCA 59.458 36.000 0.00 0.00 0.00 3.58
68 69 5.639082 CCAATAAAGGGAAGCAAATTGTCAC 59.361 40.000 0.00 0.00 0.00 3.67
69 70 6.222389 CAATAAAGGGAAGCAAATTGTCACA 58.778 36.000 0.00 0.00 0.00 3.58
70 71 4.961438 AAAGGGAAGCAAATTGTCACAT 57.039 36.364 0.00 0.00 0.00 3.21
71 72 7.716799 ATAAAGGGAAGCAAATTGTCACATA 57.283 32.000 0.00 0.00 0.00 2.29
72 73 6.610075 AAAGGGAAGCAAATTGTCACATAT 57.390 33.333 0.00 0.00 0.00 1.78
73 74 5.587388 AGGGAAGCAAATTGTCACATATG 57.413 39.130 0.00 0.00 0.00 1.78
74 75 5.263599 AGGGAAGCAAATTGTCACATATGA 58.736 37.500 10.38 0.00 0.00 2.15
75 76 5.895534 AGGGAAGCAAATTGTCACATATGAT 59.104 36.000 10.38 0.00 37.14 2.45
76 77 7.062322 AGGGAAGCAAATTGTCACATATGATA 58.938 34.615 10.38 0.00 37.14 2.15
77 78 7.560991 AGGGAAGCAAATTGTCACATATGATAA 59.439 33.333 10.38 0.00 39.89 1.75
78 79 8.196771 GGGAAGCAAATTGTCACATATGATAAA 58.803 33.333 10.38 0.00 39.15 1.40
79 80 9.023967 GGAAGCAAATTGTCACATATGATAAAC 57.976 33.333 10.38 2.51 39.15 2.01
80 81 9.793252 GAAGCAAATTGTCACATATGATAAACT 57.207 29.630 10.38 0.00 39.15 2.66
82 83 9.793252 AGCAAATTGTCACATATGATAAACTTC 57.207 29.630 10.38 0.00 39.15 3.01
83 84 9.793252 GCAAATTGTCACATATGATAAACTTCT 57.207 29.630 10.38 0.00 39.15 2.85
86 87 9.466497 AATTGTCACATATGATAAACTTCTGGT 57.534 29.630 10.38 0.00 39.15 4.00
87 88 8.862325 TTGTCACATATGATAAACTTCTGGTT 57.138 30.769 10.38 0.00 37.14 3.67
88 89 8.492673 TGTCACATATGATAAACTTCTGGTTC 57.507 34.615 10.38 0.00 37.14 3.62
89 90 7.277760 TGTCACATATGATAAACTTCTGGTTCG 59.722 37.037 10.38 0.00 37.14 3.95
90 91 7.491372 GTCACATATGATAAACTTCTGGTTCGA 59.509 37.037 10.38 0.00 37.14 3.71
91 92 7.491372 TCACATATGATAAACTTCTGGTTCGAC 59.509 37.037 10.38 0.00 37.12 4.20
92 93 6.761714 ACATATGATAAACTTCTGGTTCGACC 59.238 38.462 10.38 0.00 37.12 4.79
107 108 2.871133 TCGACCACATGTGATTACGTC 58.129 47.619 27.46 21.48 0.00 4.34
137 138 3.084039 CTGCTAAGTGGATTTTGCCTCA 58.916 45.455 0.00 0.00 0.00 3.86
150 151 0.467290 TGCCTCAAACTGGTTGGGTC 60.467 55.000 4.35 0.00 35.74 4.46
152 153 1.823250 GCCTCAAACTGGTTGGGTCAT 60.823 52.381 4.35 0.00 35.74 3.06
182 183 8.619683 AATACTGATGGATCATATGATGAGGA 57.380 34.615 22.86 7.60 43.53 3.71
183 184 6.547930 ACTGATGGATCATATGATGAGGAG 57.452 41.667 22.86 13.10 43.53 3.69
184 185 6.024247 ACTGATGGATCATATGATGAGGAGT 58.976 40.000 22.86 13.65 43.53 3.85
185 186 6.501102 ACTGATGGATCATATGATGAGGAGTT 59.499 38.462 22.86 0.00 43.53 3.01
212 213 1.971357 GGCTTAGCTGGAGCAGGTATA 59.029 52.381 20.96 0.00 42.71 1.47
240 251 9.539825 TGCTCAGAGATGTATTATCTTTTCTTC 57.460 33.333 0.00 0.00 0.00 2.87
246 257 9.566432 GAGATGTATTATCTTTTCTTCCCACAT 57.434 33.333 0.00 0.00 0.00 3.21
274 285 7.602517 ACTATTTTGTTGTAGAGATGCACTC 57.397 36.000 7.88 7.88 45.22 3.51
299 310 1.717194 GGAATTGTGTGCTTGCATGG 58.283 50.000 0.00 0.00 0.00 3.66
302 313 1.913778 ATTGTGTGCTTGCATGGAGA 58.086 45.000 0.00 0.00 0.00 3.71
310 321 0.731417 CTTGCATGGAGAGCCTTTCG 59.269 55.000 0.00 0.00 34.31 3.46
322 333 1.270550 AGCCTTTCGTTTGCCATTCAG 59.729 47.619 0.00 0.00 0.00 3.02
332 343 4.083110 CGTTTGCCATTCAGAGAAGTGATT 60.083 41.667 0.00 0.00 0.00 2.57
368 379 5.319140 TGAGATGGATTCAATTGTTGCAG 57.681 39.130 5.13 0.00 0.00 4.41
369 380 4.768448 TGAGATGGATTCAATTGTTGCAGT 59.232 37.500 5.13 0.00 0.00 4.40
370 381 5.106038 TGAGATGGATTCAATTGTTGCAGTC 60.106 40.000 5.13 7.73 0.00 3.51
371 382 4.768448 AGATGGATTCAATTGTTGCAGTCA 59.232 37.500 5.13 0.00 0.00 3.41
372 383 4.933505 TGGATTCAATTGTTGCAGTCAA 57.066 36.364 5.13 8.44 0.00 3.18
373 384 4.873817 TGGATTCAATTGTTGCAGTCAAG 58.126 39.130 5.13 1.39 31.93 3.02
374 385 3.676646 GGATTCAATTGTTGCAGTCAAGC 59.323 43.478 5.13 0.00 31.93 4.01
375 386 4.553323 GATTCAATTGTTGCAGTCAAGCT 58.447 39.130 5.13 0.00 31.93 3.74
376 387 4.389890 TTCAATTGTTGCAGTCAAGCTT 57.610 36.364 5.13 0.00 31.93 3.74
377 388 5.512753 TTCAATTGTTGCAGTCAAGCTTA 57.487 34.783 5.13 0.00 31.93 3.09
378 389 5.710513 TCAATTGTTGCAGTCAAGCTTAT 57.289 34.783 5.13 0.00 31.93 1.73
379 390 5.702865 TCAATTGTTGCAGTCAAGCTTATC 58.297 37.500 5.13 0.00 31.93 1.75
380 391 4.708726 ATTGTTGCAGTCAAGCTTATCC 57.291 40.909 0.00 0.00 31.93 2.59
381 392 3.138884 TGTTGCAGTCAAGCTTATCCA 57.861 42.857 0.00 0.00 31.93 3.41
382 393 3.076621 TGTTGCAGTCAAGCTTATCCAG 58.923 45.455 0.00 0.00 31.93 3.86
383 394 2.408271 TGCAGTCAAGCTTATCCAGG 57.592 50.000 0.00 0.00 34.99 4.45
384 395 1.020437 GCAGTCAAGCTTATCCAGGC 58.980 55.000 0.00 0.00 0.00 4.85
385 396 1.293924 CAGTCAAGCTTATCCAGGCG 58.706 55.000 0.00 0.00 0.00 5.52
386 397 1.134699 CAGTCAAGCTTATCCAGGCGA 60.135 52.381 0.00 0.00 0.00 5.54
387 398 1.555075 AGTCAAGCTTATCCAGGCGAA 59.445 47.619 0.00 0.00 0.00 4.70
388 399 1.936547 GTCAAGCTTATCCAGGCGAAG 59.063 52.381 0.00 0.00 0.00 3.79
389 400 1.134401 TCAAGCTTATCCAGGCGAAGG 60.134 52.381 0.00 0.00 0.00 3.46
390 401 1.134401 CAAGCTTATCCAGGCGAAGGA 60.134 52.381 0.00 0.00 39.97 3.36
391 402 1.204146 AGCTTATCCAGGCGAAGGAA 58.796 50.000 0.70 0.00 38.93 3.36
392 403 1.559682 AGCTTATCCAGGCGAAGGAAA 59.440 47.619 0.70 0.00 38.93 3.13
393 404 1.671328 GCTTATCCAGGCGAAGGAAAC 59.329 52.381 0.70 0.00 38.93 2.78
394 405 2.939640 GCTTATCCAGGCGAAGGAAACA 60.940 50.000 0.70 0.00 38.93 2.83
395 406 2.691409 TATCCAGGCGAAGGAAACAG 57.309 50.000 0.70 0.00 38.93 3.16
396 407 0.984230 ATCCAGGCGAAGGAAACAGA 59.016 50.000 0.70 0.00 38.93 3.41
397 408 0.984230 TCCAGGCGAAGGAAACAGAT 59.016 50.000 0.00 0.00 30.71 2.90
398 409 2.184533 TCCAGGCGAAGGAAACAGATA 58.815 47.619 0.00 0.00 30.71 1.98
399 410 2.168521 TCCAGGCGAAGGAAACAGATAG 59.831 50.000 0.00 0.00 30.71 2.08
400 411 2.168521 CCAGGCGAAGGAAACAGATAGA 59.831 50.000 0.00 0.00 0.00 1.98
401 412 3.181461 CCAGGCGAAGGAAACAGATAGAT 60.181 47.826 0.00 0.00 0.00 1.98
402 413 4.054671 CAGGCGAAGGAAACAGATAGATC 58.945 47.826 0.00 0.00 0.00 2.75
403 414 3.053455 GGCGAAGGAAACAGATAGATCG 58.947 50.000 0.00 0.00 0.00 3.69
404 415 3.243434 GGCGAAGGAAACAGATAGATCGA 60.243 47.826 0.00 0.00 0.00 3.59
405 416 4.551388 GCGAAGGAAACAGATAGATCGAT 58.449 43.478 0.00 0.00 0.00 3.59
406 417 4.619336 GCGAAGGAAACAGATAGATCGATC 59.381 45.833 17.91 17.91 0.00 3.69
407 418 5.563867 GCGAAGGAAACAGATAGATCGATCT 60.564 44.000 29.58 29.58 40.86 2.75
408 419 6.442952 CGAAGGAAACAGATAGATCGATCTT 58.557 40.000 31.55 19.19 38.32 2.40
409 420 6.920758 CGAAGGAAACAGATAGATCGATCTTT 59.079 38.462 31.55 24.10 38.32 2.52
410 421 8.076781 CGAAGGAAACAGATAGATCGATCTTTA 58.923 37.037 31.55 16.37 38.32 1.85
411 422 9.187455 GAAGGAAACAGATAGATCGATCTTTAC 57.813 37.037 31.55 19.13 38.32 2.01
412 423 8.472007 AGGAAACAGATAGATCGATCTTTACT 57.528 34.615 31.55 20.93 38.32 2.24
413 424 8.919145 AGGAAACAGATAGATCGATCTTTACTT 58.081 33.333 31.55 17.25 38.32 2.24
414 425 9.187455 GGAAACAGATAGATCGATCTTTACTTC 57.813 37.037 31.55 22.75 38.32 3.01
415 426 9.737427 GAAACAGATAGATCGATCTTTACTTCA 57.263 33.333 31.55 13.38 38.32 3.02
427 438 9.534565 TCGATCTTTACTTCATTTATCAAGGAG 57.465 33.333 0.00 0.00 0.00 3.69
428 439 9.534565 CGATCTTTACTTCATTTATCAAGGAGA 57.465 33.333 0.00 0.00 0.00 3.71
457 468 9.396022 AGGTATTTTATGAATCTTCGTGAATGT 57.604 29.630 0.00 0.00 0.00 2.71
466 477 8.771920 TGAATCTTCGTGAATGTTGTATTACT 57.228 30.769 0.00 0.00 0.00 2.24
467 478 9.863845 TGAATCTTCGTGAATGTTGTATTACTA 57.136 29.630 0.00 0.00 0.00 1.82
470 481 9.817809 ATCTTCGTGAATGTTGTATTACTATGT 57.182 29.630 0.00 0.00 0.00 2.29
473 484 8.570096 TCGTGAATGTTGTATTACTATGTAGC 57.430 34.615 0.00 0.00 0.00 3.58
474 485 8.410912 TCGTGAATGTTGTATTACTATGTAGCT 58.589 33.333 0.00 0.00 0.00 3.32
475 486 8.691727 CGTGAATGTTGTATTACTATGTAGCTC 58.308 37.037 0.00 0.00 0.00 4.09
476 487 8.691727 GTGAATGTTGTATTACTATGTAGCTCG 58.308 37.037 0.00 0.00 0.00 5.03
477 488 7.381408 TGAATGTTGTATTACTATGTAGCTCGC 59.619 37.037 0.00 0.00 0.00 5.03
478 489 6.387041 TGTTGTATTACTATGTAGCTCGCT 57.613 37.500 0.00 0.00 0.00 4.93
479 490 6.436261 TGTTGTATTACTATGTAGCTCGCTC 58.564 40.000 0.00 0.00 0.00 5.03
480 491 6.038936 TGTTGTATTACTATGTAGCTCGCTCA 59.961 38.462 0.00 0.00 0.00 4.26
481 492 5.998553 TGTATTACTATGTAGCTCGCTCAC 58.001 41.667 0.00 0.00 0.00 3.51
482 493 5.529800 TGTATTACTATGTAGCTCGCTCACA 59.470 40.000 0.00 0.00 0.00 3.58
483 494 4.976224 TTACTATGTAGCTCGCTCACAA 57.024 40.909 0.00 0.00 0.00 3.33
484 495 3.868757 ACTATGTAGCTCGCTCACAAA 57.131 42.857 0.00 0.00 0.00 2.83
485 496 4.188247 ACTATGTAGCTCGCTCACAAAA 57.812 40.909 0.00 0.00 0.00 2.44
486 497 4.759782 ACTATGTAGCTCGCTCACAAAAT 58.240 39.130 0.00 0.00 0.00 1.82
487 498 5.902681 ACTATGTAGCTCGCTCACAAAATA 58.097 37.500 0.00 0.00 0.00 1.40
488 499 5.980116 ACTATGTAGCTCGCTCACAAAATAG 59.020 40.000 0.00 0.00 0.00 1.73
489 500 4.450082 TGTAGCTCGCTCACAAAATAGA 57.550 40.909 0.00 0.00 0.00 1.98
490 501 4.424626 TGTAGCTCGCTCACAAAATAGAG 58.575 43.478 0.00 0.00 35.01 2.43
491 502 3.601443 AGCTCGCTCACAAAATAGAGT 57.399 42.857 0.00 0.00 34.39 3.24
492 503 3.931578 AGCTCGCTCACAAAATAGAGTT 58.068 40.909 0.00 0.00 34.39 3.01
493 504 5.073311 AGCTCGCTCACAAAATAGAGTTA 57.927 39.130 0.00 0.00 34.39 2.24
494 505 5.105752 AGCTCGCTCACAAAATAGAGTTAG 58.894 41.667 0.00 0.00 34.39 2.34
495 506 4.865365 GCTCGCTCACAAAATAGAGTTAGT 59.135 41.667 0.00 0.00 34.39 2.24
496 507 5.220303 GCTCGCTCACAAAATAGAGTTAGTG 60.220 44.000 0.00 0.00 34.39 2.74
497 508 6.020971 TCGCTCACAAAATAGAGTTAGTGA 57.979 37.500 0.00 0.00 34.39 3.41
498 509 6.631016 TCGCTCACAAAATAGAGTTAGTGAT 58.369 36.000 0.00 0.00 35.70 3.06
499 510 7.768240 TCGCTCACAAAATAGAGTTAGTGATA 58.232 34.615 0.00 0.00 35.70 2.15
500 511 7.915923 TCGCTCACAAAATAGAGTTAGTGATAG 59.084 37.037 0.00 0.00 35.70 2.08
501 512 7.702772 CGCTCACAAAATAGAGTTAGTGATAGT 59.297 37.037 0.00 0.00 35.70 2.12
502 513 9.026074 GCTCACAAAATAGAGTTAGTGATAGTC 57.974 37.037 0.00 0.00 35.70 2.59
515 526 9.535878 AGTTAGTGATAGTCTAGCTAATTTTGC 57.464 33.333 0.00 0.00 32.72 3.68
516 527 9.535878 GTTAGTGATAGTCTAGCTAATTTTGCT 57.464 33.333 10.14 10.14 43.79 3.91
517 528 9.751542 TTAGTGATAGTCTAGCTAATTTTGCTC 57.248 33.333 8.62 0.00 41.46 4.26
518 529 7.786030 AGTGATAGTCTAGCTAATTTTGCTCA 58.214 34.615 8.62 0.00 41.46 4.26
519 530 8.428063 AGTGATAGTCTAGCTAATTTTGCTCAT 58.572 33.333 8.62 0.00 41.46 2.90
520 531 9.698309 GTGATAGTCTAGCTAATTTTGCTCATA 57.302 33.333 8.62 0.11 41.46 2.15
521 532 9.698309 TGATAGTCTAGCTAATTTTGCTCATAC 57.302 33.333 8.62 6.38 41.46 2.39
522 533 9.921637 GATAGTCTAGCTAATTTTGCTCATACT 57.078 33.333 8.62 12.20 41.46 2.12
523 534 9.703892 ATAGTCTAGCTAATTTTGCTCATACTG 57.296 33.333 8.62 0.00 41.46 2.74
524 535 7.786030 AGTCTAGCTAATTTTGCTCATACTGA 58.214 34.615 8.62 0.00 41.46 3.41
525 536 8.260818 AGTCTAGCTAATTTTGCTCATACTGAA 58.739 33.333 8.62 0.00 41.46 3.02
526 537 8.331742 GTCTAGCTAATTTTGCTCATACTGAAC 58.668 37.037 8.62 0.00 41.46 3.18
527 538 6.111768 AGCTAATTTTGCTCATACTGAACG 57.888 37.500 0.00 0.00 35.67 3.95
528 539 5.065218 AGCTAATTTTGCTCATACTGAACGG 59.935 40.000 0.00 0.00 35.67 4.44
529 540 5.064707 GCTAATTTTGCTCATACTGAACGGA 59.935 40.000 0.00 0.00 0.00 4.69
530 541 5.551760 AATTTTGCTCATACTGAACGGAG 57.448 39.130 0.00 0.00 0.00 4.63
531 542 3.953712 TTTGCTCATACTGAACGGAGA 57.046 42.857 0.00 0.00 0.00 3.71
532 543 3.953712 TTGCTCATACTGAACGGAGAA 57.046 42.857 0.00 0.00 0.00 2.87
533 544 3.232213 TGCTCATACTGAACGGAGAAC 57.768 47.619 0.00 0.00 0.00 3.01
534 545 2.094182 TGCTCATACTGAACGGAGAACC 60.094 50.000 0.00 0.00 0.00 3.62
535 546 2.094182 GCTCATACTGAACGGAGAACCA 60.094 50.000 0.00 0.00 35.59 3.67
536 547 3.430929 GCTCATACTGAACGGAGAACCAT 60.431 47.826 0.00 0.00 35.59 3.55
537 548 4.115516 CTCATACTGAACGGAGAACCATG 58.884 47.826 0.00 0.00 35.59 3.66
538 549 3.767131 TCATACTGAACGGAGAACCATGA 59.233 43.478 0.00 0.00 35.59 3.07
539 550 2.457366 ACTGAACGGAGAACCATGAC 57.543 50.000 0.00 0.00 35.59 3.06
540 551 1.971357 ACTGAACGGAGAACCATGACT 59.029 47.619 0.00 0.00 35.59 3.41
541 552 2.368875 ACTGAACGGAGAACCATGACTT 59.631 45.455 0.00 0.00 35.59 3.01
542 553 2.738846 CTGAACGGAGAACCATGACTTG 59.261 50.000 0.00 0.00 35.59 3.16
551 562 3.434940 AACCATGACTTGGGTAGGTTC 57.565 47.619 11.77 0.00 46.56 3.62
552 563 2.986728 AACCATGACTTGGGTAGGTTCT 59.013 45.455 11.77 0.00 46.56 3.01
553 564 2.991250 CCATGACTTGGGTAGGTTCTG 58.009 52.381 0.00 0.00 42.33 3.02
554 565 2.356125 CCATGACTTGGGTAGGTTCTGG 60.356 54.545 0.00 0.00 42.33 3.86
555 566 0.690762 TGACTTGGGTAGGTTCTGGC 59.309 55.000 0.00 0.00 0.00 4.85
556 567 0.035343 GACTTGGGTAGGTTCTGGCC 60.035 60.000 0.00 0.00 0.00 5.36
557 568 1.303282 CTTGGGTAGGTTCTGGCCC 59.697 63.158 0.00 0.00 41.42 5.80
558 569 1.151677 TTGGGTAGGTTCTGGCCCT 60.152 57.895 0.00 0.00 41.59 5.19
559 570 1.497309 TTGGGTAGGTTCTGGCCCTG 61.497 60.000 0.00 0.00 41.59 4.45
560 571 1.615424 GGGTAGGTTCTGGCCCTGA 60.615 63.158 0.00 0.00 38.12 3.86
561 572 0.988678 GGGTAGGTTCTGGCCCTGAT 60.989 60.000 0.00 0.00 38.12 2.90
562 573 0.181350 GGTAGGTTCTGGCCCTGATG 59.819 60.000 0.00 0.00 33.35 3.07
563 574 1.204146 GTAGGTTCTGGCCCTGATGA 58.796 55.000 0.00 0.00 33.35 2.92
564 575 1.139853 GTAGGTTCTGGCCCTGATGAG 59.860 57.143 0.00 0.00 33.35 2.90
565 576 0.548682 AGGTTCTGGCCCTGATGAGT 60.549 55.000 0.00 0.00 0.00 3.41
566 577 0.107459 GGTTCTGGCCCTGATGAGTC 60.107 60.000 0.00 0.00 0.00 3.36
567 578 0.908198 GTTCTGGCCCTGATGAGTCT 59.092 55.000 0.00 0.00 0.00 3.24
568 579 0.907486 TTCTGGCCCTGATGAGTCTG 59.093 55.000 0.00 0.00 0.00 3.51
569 580 0.252421 TCTGGCCCTGATGAGTCTGT 60.252 55.000 0.00 0.00 0.00 3.41
570 581 0.177604 CTGGCCCTGATGAGTCTGTC 59.822 60.000 0.00 0.00 0.00 3.51
571 582 1.142748 GGCCCTGATGAGTCTGTCG 59.857 63.158 0.00 0.00 0.00 4.35
572 583 1.608717 GGCCCTGATGAGTCTGTCGT 61.609 60.000 0.00 0.00 0.00 4.34
573 584 0.459237 GCCCTGATGAGTCTGTCGTG 60.459 60.000 0.00 0.00 0.00 4.35
574 585 0.459237 CCCTGATGAGTCTGTCGTGC 60.459 60.000 0.00 0.00 0.00 5.34
575 586 0.529833 CCTGATGAGTCTGTCGTGCT 59.470 55.000 0.00 0.00 0.00 4.40
576 587 1.745653 CCTGATGAGTCTGTCGTGCTA 59.254 52.381 0.00 0.00 0.00 3.49
577 588 2.223456 CCTGATGAGTCTGTCGTGCTAG 60.223 54.545 0.00 0.00 0.00 3.42
578 589 1.133216 TGATGAGTCTGTCGTGCTAGC 59.867 52.381 8.10 8.10 0.00 3.42
579 590 1.403679 GATGAGTCTGTCGTGCTAGCT 59.596 52.381 17.23 0.00 0.00 3.32
580 591 0.523519 TGAGTCTGTCGTGCTAGCTG 59.476 55.000 17.23 8.75 0.00 4.24
581 592 0.800300 GAGTCTGTCGTGCTAGCTGC 60.800 60.000 17.23 8.00 43.25 5.25
582 593 1.214062 GTCTGTCGTGCTAGCTGCT 59.786 57.895 17.23 7.57 43.37 4.24
583 594 0.800300 GTCTGTCGTGCTAGCTGCTC 60.800 60.000 17.23 5.06 43.37 4.26
584 595 1.213799 CTGTCGTGCTAGCTGCTCA 59.786 57.895 17.23 9.29 43.37 4.26
585 596 0.179116 CTGTCGTGCTAGCTGCTCAT 60.179 55.000 17.23 0.00 43.37 2.90
586 597 1.066152 CTGTCGTGCTAGCTGCTCATA 59.934 52.381 17.23 0.00 43.37 2.15
587 598 1.476488 TGTCGTGCTAGCTGCTCATAA 59.524 47.619 17.23 0.00 43.37 1.90
588 599 2.101415 TGTCGTGCTAGCTGCTCATAAT 59.899 45.455 17.23 0.00 43.37 1.28
589 600 3.126831 GTCGTGCTAGCTGCTCATAATT 58.873 45.455 17.23 0.00 43.37 1.40
590 601 3.060003 GTCGTGCTAGCTGCTCATAATTG 60.060 47.826 17.23 0.00 43.37 2.32
591 602 2.868583 CGTGCTAGCTGCTCATAATTGT 59.131 45.455 17.23 0.00 43.37 2.71
592 603 4.051237 CGTGCTAGCTGCTCATAATTGTA 58.949 43.478 17.23 0.00 43.37 2.41
593 604 4.507756 CGTGCTAGCTGCTCATAATTGTAA 59.492 41.667 17.23 0.00 43.37 2.41
594 605 5.332883 CGTGCTAGCTGCTCATAATTGTAAG 60.333 44.000 17.23 0.00 43.37 2.34
595 606 5.049818 GTGCTAGCTGCTCATAATTGTAAGG 60.050 44.000 17.23 0.00 43.37 2.69
596 607 5.163311 TGCTAGCTGCTCATAATTGTAAGGA 60.163 40.000 17.23 0.00 43.37 3.36
597 608 5.178438 GCTAGCTGCTCATAATTGTAAGGAC 59.822 44.000 4.91 0.00 38.95 3.85
598 609 5.365021 AGCTGCTCATAATTGTAAGGACT 57.635 39.130 0.00 0.00 0.00 3.85
599 610 5.749462 AGCTGCTCATAATTGTAAGGACTT 58.251 37.500 0.00 0.00 0.00 3.01
600 611 5.587844 AGCTGCTCATAATTGTAAGGACTTG 59.412 40.000 0.00 0.00 0.00 3.16
601 612 5.220931 GCTGCTCATAATTGTAAGGACTTGG 60.221 44.000 0.00 0.00 0.00 3.61
602 613 5.815581 TGCTCATAATTGTAAGGACTTGGT 58.184 37.500 0.00 0.00 0.00 3.67
603 614 5.647658 TGCTCATAATTGTAAGGACTTGGTG 59.352 40.000 0.00 0.00 0.00 4.17
604 615 5.880332 GCTCATAATTGTAAGGACTTGGTGA 59.120 40.000 0.00 0.00 0.00 4.02
605 616 6.037610 GCTCATAATTGTAAGGACTTGGTGAG 59.962 42.308 0.00 0.00 33.30 3.51
606 617 7.016153 TCATAATTGTAAGGACTTGGTGAGT 57.984 36.000 0.00 0.00 42.70 3.41
607 618 7.458397 TCATAATTGTAAGGACTTGGTGAGTT 58.542 34.615 0.00 0.00 39.19 3.01
608 619 7.390440 TCATAATTGTAAGGACTTGGTGAGTTG 59.610 37.037 0.00 0.00 39.19 3.16
609 620 4.764050 TTGTAAGGACTTGGTGAGTTGA 57.236 40.909 0.00 0.00 39.19 3.18
610 621 4.336889 TGTAAGGACTTGGTGAGTTGAG 57.663 45.455 0.00 0.00 39.19 3.02
611 622 3.709653 TGTAAGGACTTGGTGAGTTGAGT 59.290 43.478 0.00 0.00 39.19 3.41
612 623 4.897076 TGTAAGGACTTGGTGAGTTGAGTA 59.103 41.667 0.00 0.00 39.19 2.59
613 624 5.364446 TGTAAGGACTTGGTGAGTTGAGTAA 59.636 40.000 0.00 0.00 39.19 2.24
614 625 5.568620 AAGGACTTGGTGAGTTGAGTAAT 57.431 39.130 0.00 0.00 39.19 1.89
615 626 6.681729 AAGGACTTGGTGAGTTGAGTAATA 57.318 37.500 0.00 0.00 39.19 0.98
616 627 6.038997 AGGACTTGGTGAGTTGAGTAATAC 57.961 41.667 0.00 0.00 39.19 1.89
617 628 5.542635 AGGACTTGGTGAGTTGAGTAATACA 59.457 40.000 0.00 0.00 39.19 2.29
618 629 6.042781 AGGACTTGGTGAGTTGAGTAATACAA 59.957 38.462 0.00 0.00 39.19 2.41
619 630 6.879458 GGACTTGGTGAGTTGAGTAATACAAT 59.121 38.462 0.00 0.00 39.19 2.71
620 631 7.390718 GGACTTGGTGAGTTGAGTAATACAATT 59.609 37.037 0.00 0.00 39.19 2.32
621 632 9.431887 GACTTGGTGAGTTGAGTAATACAATTA 57.568 33.333 0.00 0.00 39.19 1.40
622 633 9.959721 ACTTGGTGAGTTGAGTAATACAATTAT 57.040 29.630 0.00 0.00 33.92 1.28
630 641 8.889717 AGTTGAGTAATACAATTATTTCACCCG 58.110 33.333 0.00 0.00 0.00 5.28
631 642 7.254227 TGAGTAATACAATTATTTCACCCGC 57.746 36.000 0.00 0.00 0.00 6.13
632 643 6.824196 TGAGTAATACAATTATTTCACCCGCA 59.176 34.615 0.00 0.00 0.00 5.69
633 644 7.337184 TGAGTAATACAATTATTTCACCCGCAA 59.663 33.333 0.00 0.00 0.00 4.85
634 645 8.057536 AGTAATACAATTATTTCACCCGCAAA 57.942 30.769 0.00 0.00 0.00 3.68
635 646 8.524487 AGTAATACAATTATTTCACCCGCAAAA 58.476 29.630 0.00 0.00 0.00 2.44
636 647 9.141400 GTAATACAATTATTTCACCCGCAAAAA 57.859 29.630 0.00 0.00 0.00 1.94
691 702 3.611766 AGGTTGAGGTTGAGTAATCCG 57.388 47.619 0.00 0.00 0.00 4.18
711 729 1.068055 GTGTAGACACTACCACACGGG 60.068 57.143 5.53 0.00 43.25 5.28
712 730 1.202915 TGTAGACACTACCACACGGGA 60.203 52.381 0.00 0.00 41.15 5.14
794 816 1.215647 CCTCACCTCAGTGTACGGC 59.784 63.158 0.00 0.00 44.83 5.68
815 837 2.825387 GCGTGCAGATGCCATCCA 60.825 61.111 0.00 0.00 41.18 3.41
859 973 1.103803 CATTTCTGCTGATGCCTGCT 58.896 50.000 0.00 0.00 37.99 4.24
883 997 1.268032 CCGTGAATAATTGCACTCGCC 60.268 52.381 0.00 0.00 37.32 5.54
914 1028 2.360350 CTTGCTGCCCGTCACCAT 60.360 61.111 0.00 0.00 0.00 3.55
1059 1176 1.815003 GCAGCAAGGCACAGTATCTTT 59.185 47.619 0.00 0.00 0.00 2.52
1060 1177 2.415090 GCAGCAAGGCACAGTATCTTTG 60.415 50.000 0.00 0.00 0.00 2.77
1061 1178 2.816087 CAGCAAGGCACAGTATCTTTGT 59.184 45.455 0.00 0.00 0.00 2.83
1062 1179 3.254166 CAGCAAGGCACAGTATCTTTGTT 59.746 43.478 0.00 0.00 0.00 2.83
1063 1180 3.891366 AGCAAGGCACAGTATCTTTGTTT 59.109 39.130 0.00 0.00 0.00 2.83
1082 1199 0.036105 TGTGCAGTGATGTAGCCTGG 60.036 55.000 0.00 0.00 0.00 4.45
1122 1239 6.856938 CGGATCTCGACTAAATTACTCGATTT 59.143 38.462 5.49 0.00 42.43 2.17
1123 1240 7.059716 CGGATCTCGACTAAATTACTCGATTTC 59.940 40.741 5.49 5.88 42.43 2.17
1124 1241 7.326547 GGATCTCGACTAAATTACTCGATTTCC 59.673 40.741 5.49 9.75 35.95 3.13
1125 1242 7.330900 TCTCGACTAAATTACTCGATTTCCT 57.669 36.000 5.49 0.00 35.95 3.36
1126 1243 8.442632 TCTCGACTAAATTACTCGATTTCCTA 57.557 34.615 5.49 0.00 35.95 2.94
1127 1244 8.896744 TCTCGACTAAATTACTCGATTTCCTAA 58.103 33.333 5.49 0.00 35.95 2.69
1128 1245 8.847444 TCGACTAAATTACTCGATTTCCTAAC 57.153 34.615 1.61 0.00 31.63 2.34
1129 1246 7.641411 TCGACTAAATTACTCGATTTCCTAACG 59.359 37.037 1.61 0.00 31.63 3.18
1130 1247 7.430502 CGACTAAATTACTCGATTTCCTAACGT 59.569 37.037 0.00 0.00 31.96 3.99
1131 1248 8.626093 ACTAAATTACTCGATTTCCTAACGTC 57.374 34.615 0.00 0.00 31.96 4.34
1132 1249 6.564854 AAATTACTCGATTTCCTAACGTCG 57.435 37.500 0.00 0.00 35.55 5.12
1133 1250 4.685169 TTACTCGATTTCCTAACGTCGT 57.315 40.909 0.00 0.00 35.71 4.34
1144 1261 1.455786 CTAACGTCGTGTGCCTTTCTG 59.544 52.381 0.00 0.00 0.00 3.02
1145 1262 0.461339 AACGTCGTGTGCCTTTCTGT 60.461 50.000 0.00 0.00 0.00 3.41
1146 1263 0.386476 ACGTCGTGTGCCTTTCTGTA 59.614 50.000 0.00 0.00 0.00 2.74
1148 1265 2.066262 CGTCGTGTGCCTTTCTGTAAT 58.934 47.619 0.00 0.00 0.00 1.89
1151 1268 4.150980 CGTCGTGTGCCTTTCTGTAATTTA 59.849 41.667 0.00 0.00 0.00 1.40
1257 1396 5.181245 CACCAGGTAAAATCTAACCACACAG 59.819 44.000 0.00 0.00 38.30 3.66
1281 1420 2.137523 GAAACCAAATTGCACTGCAGG 58.862 47.619 19.93 8.27 40.61 4.85
1284 1423 0.390124 CCAAATTGCACTGCAGGTGT 59.610 50.000 19.93 0.00 46.86 4.16
1290 1429 1.812235 TGCACTGCAGGTGTATCTTG 58.188 50.000 19.93 5.46 46.86 3.02
1291 1430 1.072173 TGCACTGCAGGTGTATCTTGT 59.928 47.619 19.93 0.00 46.86 3.16
1292 1431 2.301583 TGCACTGCAGGTGTATCTTGTA 59.698 45.455 19.93 0.69 46.86 2.41
1293 1432 3.055167 TGCACTGCAGGTGTATCTTGTAT 60.055 43.478 19.93 0.00 46.86 2.29
1294 1433 3.941483 GCACTGCAGGTGTATCTTGTATT 59.059 43.478 19.93 0.00 46.86 1.89
1295 1434 4.034510 GCACTGCAGGTGTATCTTGTATTC 59.965 45.833 19.93 0.00 46.86 1.75
1296 1435 5.423015 CACTGCAGGTGTATCTTGTATTCT 58.577 41.667 19.93 0.00 40.79 2.40
1297 1436 5.877012 CACTGCAGGTGTATCTTGTATTCTT 59.123 40.000 19.93 0.00 40.79 2.52
1298 1437 5.877012 ACTGCAGGTGTATCTTGTATTCTTG 59.123 40.000 19.93 0.00 0.00 3.02
1299 1438 6.048732 TGCAGGTGTATCTTGTATTCTTGA 57.951 37.500 0.00 0.00 0.00 3.02
1300 1439 6.653020 TGCAGGTGTATCTTGTATTCTTGAT 58.347 36.000 0.00 0.00 0.00 2.57
1301 1440 7.112122 TGCAGGTGTATCTTGTATTCTTGATT 58.888 34.615 0.00 0.00 0.00 2.57
1303 1442 8.552034 GCAGGTGTATCTTGTATTCTTGATTAC 58.448 37.037 0.00 0.00 0.00 1.89
1313 1467 9.831737 CTTGTATTCTTGATTACAACTTTCCAG 57.168 33.333 11.65 1.46 32.27 3.86
1332 1486 1.004044 AGTTCTGCACAGATCAAGGGG 59.996 52.381 10.49 0.00 37.29 4.79
1334 1488 0.325933 TCTGCACAGATCAAGGGGTG 59.674 55.000 0.00 0.00 31.41 4.61
1355 1516 7.065683 GGGGTGATTTGGTATTTTATTTGCTTG 59.934 37.037 0.00 0.00 0.00 4.01
1383 1544 4.102210 AGGCTGTATCTTGCATATCACTGT 59.898 41.667 0.00 0.00 0.00 3.55
1494 1662 1.929836 GCTCAGCGGTCTTGTATCTTG 59.070 52.381 0.00 0.00 0.00 3.02
1705 3687 7.770366 TTACTTCTCACCTGTATGTACAAGA 57.230 36.000 0.00 0.00 35.50 3.02
1766 4489 3.876914 TGCACGCTTCCTTTATAATCTGG 59.123 43.478 0.00 0.00 0.00 3.86
1914 4638 6.864685 CAGTCTTCATATGTGCAATGTTTGTT 59.135 34.615 1.90 0.00 0.00 2.83
1918 4642 9.190858 TCTTCATATGTGCAATGTTTGTTAAAC 57.809 29.630 1.90 0.00 41.73 2.01
1919 4643 7.559835 TCATATGTGCAATGTTTGTTAAACG 57.440 32.000 1.90 0.00 44.28 3.60
1935 4758 3.916405 AAACGGTGCAAAATTTTGTCG 57.084 38.095 27.13 26.48 40.24 4.35
2092 4981 0.803117 GAAGCCGGTAAAAGGAGCAC 59.197 55.000 1.90 0.00 0.00 4.40
2231 5237 1.408683 CGATGGCCCATTCTTCCTTGA 60.409 52.381 0.00 0.00 0.00 3.02
2235 5241 1.549950 GGCCCATTCTTCCTTGACCAA 60.550 52.381 0.00 0.00 0.00 3.67
2332 5339 9.781834 TTATGAAAAGAACTGTAGTTTGTTGTG 57.218 29.630 0.00 0.00 38.56 3.33
2333 5340 7.441890 TGAAAAGAACTGTAGTTTGTTGTGA 57.558 32.000 0.00 0.00 38.56 3.58
2334 5341 8.050778 TGAAAAGAACTGTAGTTTGTTGTGAT 57.949 30.769 0.00 0.00 38.56 3.06
2335 5342 8.519526 TGAAAAGAACTGTAGTTTGTTGTGATT 58.480 29.630 0.00 0.00 38.56 2.57
2415 5453 7.443302 TTCTGGTATCAAGAAGGATGATCTT 57.557 36.000 0.00 0.00 38.44 2.40
2424 5462 1.600058 AGGATGATCTTGCCAAGGGA 58.400 50.000 4.30 0.00 0.00 4.20
2502 5540 8.634335 TGAGATTATTCACATTGTTTGGAAGA 57.366 30.769 0.00 0.00 0.00 2.87
2515 5553 5.007034 TGTTTGGAAGAGTTGTTCTGACAA 58.993 37.500 0.00 0.00 43.23 3.18
2517 5555 4.753516 TGGAAGAGTTGTTCTGACAAGA 57.246 40.909 0.00 0.00 45.86 3.02
2586 5624 1.808411 TGTCAGTTCTCCAATTCGGC 58.192 50.000 0.00 0.00 33.14 5.54
2632 5670 3.802139 CGACGCATATACACAGACCAAAT 59.198 43.478 0.00 0.00 0.00 2.32
2649 5687 4.148838 CCAAATTGGACCCACAGTTTCTA 58.851 43.478 6.04 0.00 40.96 2.10
2676 5714 5.477984 TGATCAAATGAAGGAGAAGTTTGGG 59.522 40.000 0.00 0.00 32.26 4.12
2684 5722 2.236395 AGGAGAAGTTTGGGGTACGATG 59.764 50.000 0.00 0.00 0.00 3.84
2701 5739 4.557205 ACGATGTTTCCTTATATCTCGGC 58.443 43.478 0.00 0.00 0.00 5.54
2702 5740 4.038763 ACGATGTTTCCTTATATCTCGGCA 59.961 41.667 0.00 0.00 0.00 5.69
2717 5755 0.575390 CGGCATCGGTTCGTGTTATC 59.425 55.000 0.00 0.00 0.00 1.75
2730 5768 3.386726 TCGTGTTATCTTCCAATCCCGAT 59.613 43.478 0.00 0.00 0.00 4.18
2735 5773 7.201661 CGTGTTATCTTCCAATCCCGATAAAAA 60.202 37.037 0.00 0.00 32.15 1.94
2746 5784 5.070770 TCCCGATAAAAACTTACACGCTA 57.929 39.130 0.00 0.00 0.00 4.26
2811 5849 3.306502 CCAAATATGCATGCCAGGGAATC 60.307 47.826 16.68 0.00 0.00 2.52
2903 5941 8.908786 GCATATAGGCCATGCTTTTATATAGA 57.091 34.615 17.12 0.00 44.35 1.98
2904 5942 8.997323 GCATATAGGCCATGCTTTTATATAGAG 58.003 37.037 17.12 1.60 44.35 2.43
2939 5981 8.301252 ACAAACTGGGTCTTATTGTAAACTTT 57.699 30.769 0.00 0.00 32.81 2.66
3020 6074 1.695242 TGAACCGGTGCTCCTTTCTTA 59.305 47.619 15.35 0.00 0.00 2.10
3042 6096 9.886132 TCTTACTCCTATCAATTTTAGTTGTCC 57.114 33.333 0.00 0.00 0.00 4.02
3043 6097 9.667107 CTTACTCCTATCAATTTTAGTTGTCCA 57.333 33.333 0.00 0.00 0.00 4.02
3044 6098 7.923414 ACTCCTATCAATTTTAGTTGTCCAC 57.077 36.000 0.00 0.00 0.00 4.02
3045 6099 7.458397 ACTCCTATCAATTTTAGTTGTCCACA 58.542 34.615 0.00 0.00 0.00 4.17
3088 6142 4.166144 ACATATTAAGGGGTTGCTAGCAGT 59.834 41.667 18.45 4.54 0.00 4.40
3104 6158 5.408909 GCTAGCAGTATCGACTACATACAGA 59.591 44.000 10.63 0.00 33.32 3.41
3105 6159 6.092944 GCTAGCAGTATCGACTACATACAGAT 59.907 42.308 10.63 0.00 33.32 2.90
3106 6160 6.885952 AGCAGTATCGACTACATACAGATT 57.114 37.500 0.00 0.00 33.32 2.40
3107 6161 6.904498 AGCAGTATCGACTACATACAGATTC 58.096 40.000 0.00 0.00 33.32 2.52
3108 6162 6.486993 AGCAGTATCGACTACATACAGATTCA 59.513 38.462 0.00 0.00 33.32 2.57
3109 6163 7.175816 AGCAGTATCGACTACATACAGATTCAT 59.824 37.037 0.00 0.00 33.32 2.57
3110 6164 7.483375 GCAGTATCGACTACATACAGATTCATC 59.517 40.741 0.00 0.00 33.32 2.92
3127 6181 0.578683 ATCATTCATGCGTTCGCTCG 59.421 50.000 17.63 9.00 0.00 5.03
3210 6264 3.750130 GTCCTAATCGCTCTATGTCGGTA 59.250 47.826 0.00 0.00 0.00 4.02
3228 6282 2.827921 GGTACCTCGTAGTTTCTTCCCA 59.172 50.000 4.06 0.00 0.00 4.37
3237 6324 1.275573 AGTTTCTTCCCAGTACGAGGC 59.724 52.381 0.00 0.00 0.00 4.70
3247 6334 2.693591 CCAGTACGAGGCTCCTAATTGA 59.306 50.000 9.32 0.00 0.00 2.57
3248 6335 3.132289 CCAGTACGAGGCTCCTAATTGAA 59.868 47.826 9.32 0.00 0.00 2.69
3249 6336 4.382685 CCAGTACGAGGCTCCTAATTGAAA 60.383 45.833 9.32 0.00 0.00 2.69
3250 6337 5.360591 CAGTACGAGGCTCCTAATTGAAAT 58.639 41.667 9.32 0.00 0.00 2.17
3251 6338 5.235186 CAGTACGAGGCTCCTAATTGAAATG 59.765 44.000 9.32 0.00 0.00 2.32
3252 6339 4.222124 ACGAGGCTCCTAATTGAAATGT 57.778 40.909 9.32 0.00 0.00 2.71
3253 6340 3.941483 ACGAGGCTCCTAATTGAAATGTG 59.059 43.478 9.32 0.00 0.00 3.21
3254 6341 4.191544 CGAGGCTCCTAATTGAAATGTGA 58.808 43.478 9.32 0.00 0.00 3.58
3255 6342 4.635765 CGAGGCTCCTAATTGAAATGTGAA 59.364 41.667 9.32 0.00 0.00 3.18
3256 6343 5.123820 CGAGGCTCCTAATTGAAATGTGAAA 59.876 40.000 9.32 0.00 0.00 2.69
3264 6351 5.616488 AATTGAAATGTGAAATGCTTGGC 57.384 34.783 0.00 0.00 0.00 4.52
3267 6354 2.068837 AATGTGAAATGCTTGGCGTG 57.931 45.000 0.00 0.00 0.00 5.34
3271 6358 0.515127 TGAAATGCTTGGCGTGTACG 59.485 50.000 0.00 0.00 43.27 3.67
3294 6381 1.757118 CAACGAGCTCCAGGGAGATAA 59.243 52.381 19.34 0.00 41.31 1.75
3296 6383 0.312416 CGAGCTCCAGGGAGATAACG 59.688 60.000 19.34 9.65 41.31 3.18
3304 6391 2.223923 CCAGGGAGATAACGAAGAGCTG 60.224 54.545 0.00 0.00 0.00 4.24
3306 6393 1.482278 GGAGATAACGAAGAGCTGCG 58.518 55.000 0.00 0.00 0.00 5.18
3366 6457 1.543802 TCGGCATGTTTTCAACCATCC 59.456 47.619 0.00 0.00 32.48 3.51
3367 6458 1.732077 CGGCATGTTTTCAACCATCCG 60.732 52.381 0.00 0.00 32.48 4.18
3368 6459 1.543802 GGCATGTTTTCAACCATCCGA 59.456 47.619 0.00 0.00 32.48 4.55
3388 6523 4.379186 CCGATAGTACGATGCCGACTAATT 60.379 45.833 0.00 0.00 39.50 1.40
3399 6534 0.099968 CGACTAATTGTCTCCGGCGA 59.900 55.000 9.30 0.00 43.25 5.54
3406 6541 2.434185 GTCTCCGGCGAATGTGCA 60.434 61.111 9.30 0.00 36.28 4.57
3483 6633 7.359181 CGCTTCTTCTTCTTCTTCTTCTTCTTC 60.359 40.741 0.00 0.00 0.00 2.87
3521 6671 1.735920 CAGCTGACGTCTGTGCTCC 60.736 63.158 21.51 6.60 33.03 4.70
3547 6720 6.342906 TCAAAGTTTTCTTCGTACTTCTCCA 58.657 36.000 0.00 0.00 39.48 3.86
3572 6745 2.676176 GCCCTACTTCCGTTTACCAGTC 60.676 54.545 0.00 0.00 0.00 3.51
3577 6750 0.600782 TTCCGTTTACCAGTCCGCAC 60.601 55.000 0.00 0.00 0.00 5.34
3580 6753 0.599204 CGTTTACCAGTCCGCACAGT 60.599 55.000 0.00 0.00 0.00 3.55
3634 6807 7.541162 TGTATACTAGTACATTTTGTGCGTCT 58.459 34.615 4.31 0.00 38.05 4.18
3658 6831 1.134580 GCTCCTTGATCACTAGCTGCA 60.135 52.381 13.36 0.00 0.00 4.41
3761 6941 7.870445 GTGATCACTAGATGGATTTTCTACTCC 59.130 40.741 18.83 0.00 33.72 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 3.367025 GTCCAACTTAAGGTCGATCAACG 59.633 47.826 7.53 0.00 44.09 4.10
9 10 3.683340 GGTCCAACTTAAGGTCGATCAAC 59.317 47.826 7.53 0.00 0.00 3.18
10 11 3.581332 AGGTCCAACTTAAGGTCGATCAA 59.419 43.478 7.53 0.00 0.00 2.57
11 12 3.170717 AGGTCCAACTTAAGGTCGATCA 58.829 45.455 7.53 0.00 0.00 2.92
12 13 3.889520 AGGTCCAACTTAAGGTCGATC 57.110 47.619 7.53 0.00 0.00 3.69
13 14 4.960469 TGATAGGTCCAACTTAAGGTCGAT 59.040 41.667 7.53 0.00 0.00 3.59
14 15 4.159135 GTGATAGGTCCAACTTAAGGTCGA 59.841 45.833 7.53 0.00 0.00 4.20
15 16 4.430908 GTGATAGGTCCAACTTAAGGTCG 58.569 47.826 7.53 0.00 0.00 4.79
16 17 4.383880 GGGTGATAGGTCCAACTTAAGGTC 60.384 50.000 7.53 0.00 0.00 3.85
17 18 3.522343 GGGTGATAGGTCCAACTTAAGGT 59.478 47.826 7.53 0.00 0.00 3.50
18 19 3.431766 CGGGTGATAGGTCCAACTTAAGG 60.432 52.174 7.53 0.00 0.00 2.69
19 20 3.449737 TCGGGTGATAGGTCCAACTTAAG 59.550 47.826 0.00 0.00 0.00 1.85
20 21 3.443052 TCGGGTGATAGGTCCAACTTAA 58.557 45.455 0.00 0.00 0.00 1.85
21 22 3.104519 TCGGGTGATAGGTCCAACTTA 57.895 47.619 0.00 0.00 0.00 2.24
22 23 1.946984 TCGGGTGATAGGTCCAACTT 58.053 50.000 0.00 0.00 0.00 2.66
23 24 2.176247 ATCGGGTGATAGGTCCAACT 57.824 50.000 0.00 0.00 31.44 3.16
24 25 2.484947 GGAATCGGGTGATAGGTCCAAC 60.485 54.545 0.00 0.00 31.81 3.77
25 26 1.766496 GGAATCGGGTGATAGGTCCAA 59.234 52.381 0.00 0.00 31.81 3.53
26 27 1.343580 TGGAATCGGGTGATAGGTCCA 60.344 52.381 0.00 0.00 36.91 4.02
27 28 1.420430 TGGAATCGGGTGATAGGTCC 58.580 55.000 0.00 0.00 33.40 4.46
28 29 3.771577 ATTGGAATCGGGTGATAGGTC 57.228 47.619 0.00 0.00 33.40 3.85
29 30 5.456186 CCTTTATTGGAATCGGGTGATAGGT 60.456 44.000 0.00 0.00 33.40 3.08
30 31 5.003804 CCTTTATTGGAATCGGGTGATAGG 58.996 45.833 0.00 0.00 33.40 2.57
31 32 5.003804 CCCTTTATTGGAATCGGGTGATAG 58.996 45.833 0.00 0.00 33.40 2.08
32 33 4.661240 TCCCTTTATTGGAATCGGGTGATA 59.339 41.667 0.00 0.00 33.40 2.15
33 34 3.461831 TCCCTTTATTGGAATCGGGTGAT 59.538 43.478 0.00 0.00 35.98 3.06
34 35 2.847449 TCCCTTTATTGGAATCGGGTGA 59.153 45.455 0.00 0.00 33.41 4.02
35 36 3.290948 TCCCTTTATTGGAATCGGGTG 57.709 47.619 0.00 0.00 33.41 4.61
36 37 3.898482 CTTCCCTTTATTGGAATCGGGT 58.102 45.455 0.00 0.00 40.94 5.28
37 38 2.623416 GCTTCCCTTTATTGGAATCGGG 59.377 50.000 0.00 0.00 40.94 5.14
38 39 3.287222 TGCTTCCCTTTATTGGAATCGG 58.713 45.455 0.00 0.00 40.94 4.18
39 40 4.981806 TTGCTTCCCTTTATTGGAATCG 57.018 40.909 0.00 0.00 40.94 3.34
40 41 7.105588 ACAATTTGCTTCCCTTTATTGGAATC 58.894 34.615 0.00 0.00 40.94 2.52
41 42 7.019656 ACAATTTGCTTCCCTTTATTGGAAT 57.980 32.000 0.00 0.00 40.94 3.01
42 43 6.042552 TGACAATTTGCTTCCCTTTATTGGAA 59.957 34.615 0.00 0.00 39.54 3.53
43 44 5.541868 TGACAATTTGCTTCCCTTTATTGGA 59.458 36.000 0.00 0.00 0.00 3.53
44 45 5.639082 GTGACAATTTGCTTCCCTTTATTGG 59.361 40.000 0.00 0.00 0.00 3.16
45 46 6.222389 TGTGACAATTTGCTTCCCTTTATTG 58.778 36.000 0.00 0.00 0.00 1.90
46 47 6.418057 TGTGACAATTTGCTTCCCTTTATT 57.582 33.333 0.00 0.00 0.00 1.40
47 48 6.610075 ATGTGACAATTTGCTTCCCTTTAT 57.390 33.333 0.00 0.00 0.00 1.40
48 49 7.395772 TCATATGTGACAATTTGCTTCCCTTTA 59.604 33.333 1.90 0.00 0.00 1.85
49 50 4.961438 ATGTGACAATTTGCTTCCCTTT 57.039 36.364 0.00 0.00 0.00 3.11
50 51 5.716228 TCATATGTGACAATTTGCTTCCCTT 59.284 36.000 1.90 0.00 0.00 3.95
51 52 5.263599 TCATATGTGACAATTTGCTTCCCT 58.736 37.500 1.90 0.00 0.00 4.20
52 53 5.581126 TCATATGTGACAATTTGCTTCCC 57.419 39.130 1.90 0.00 0.00 3.97
53 54 9.023967 GTTTATCATATGTGACAATTTGCTTCC 57.976 33.333 1.90 0.00 37.14 3.46
54 55 9.793252 AGTTTATCATATGTGACAATTTGCTTC 57.207 29.630 1.90 0.00 37.14 3.86
56 57 9.793252 GAAGTTTATCATATGTGACAATTTGCT 57.207 29.630 1.90 0.00 37.14 3.91
57 58 9.793252 AGAAGTTTATCATATGTGACAATTTGC 57.207 29.630 1.90 0.00 37.14 3.68
60 61 9.466497 ACCAGAAGTTTATCATATGTGACAATT 57.534 29.630 1.90 0.00 37.14 2.32
61 62 9.466497 AACCAGAAGTTTATCATATGTGACAAT 57.534 29.630 1.90 0.00 33.92 2.71
62 63 8.862325 AACCAGAAGTTTATCATATGTGACAA 57.138 30.769 1.90 0.00 33.92 3.18
63 64 7.277760 CGAACCAGAAGTTTATCATATGTGACA 59.722 37.037 1.90 0.00 39.40 3.58
64 65 7.491372 TCGAACCAGAAGTTTATCATATGTGAC 59.509 37.037 1.90 0.00 39.40 3.67
65 66 7.491372 GTCGAACCAGAAGTTTATCATATGTGA 59.509 37.037 1.90 0.00 39.40 3.58
66 67 7.254455 GGTCGAACCAGAAGTTTATCATATGTG 60.254 40.741 1.90 0.00 39.40 3.21
67 68 6.761714 GGTCGAACCAGAAGTTTATCATATGT 59.238 38.462 1.90 0.00 39.40 2.29
68 69 6.761242 TGGTCGAACCAGAAGTTTATCATATG 59.239 38.462 0.00 0.00 44.79 1.78
69 70 6.884832 TGGTCGAACCAGAAGTTTATCATAT 58.115 36.000 0.00 0.00 44.79 1.78
70 71 6.288941 TGGTCGAACCAGAAGTTTATCATA 57.711 37.500 0.00 0.00 44.79 2.15
71 72 5.160607 TGGTCGAACCAGAAGTTTATCAT 57.839 39.130 0.00 0.00 44.79 2.45
72 73 4.610605 TGGTCGAACCAGAAGTTTATCA 57.389 40.909 0.00 0.00 44.79 2.15
84 85 2.347452 CGTAATCACATGTGGTCGAACC 59.653 50.000 25.16 4.91 39.22 3.62
85 86 2.991190 ACGTAATCACATGTGGTCGAAC 59.009 45.455 25.16 15.66 0.00 3.95
86 87 3.057104 AGACGTAATCACATGTGGTCGAA 60.057 43.478 25.16 6.31 0.00 3.71
87 88 2.490509 AGACGTAATCACATGTGGTCGA 59.509 45.455 25.16 7.76 0.00 4.20
88 89 2.852413 GAGACGTAATCACATGTGGTCG 59.148 50.000 25.16 20.29 0.00 4.79
89 90 3.187700 GGAGACGTAATCACATGTGGTC 58.812 50.000 25.16 21.51 0.00 4.02
90 91 3.247006 GGAGACGTAATCACATGTGGT 57.753 47.619 25.16 16.74 0.00 4.16
107 108 0.108615 CCACTTAGCAGGTGTCGGAG 60.109 60.000 0.00 0.00 33.31 4.63
137 138 8.966868 CAGTATTTAATATGACCCAACCAGTTT 58.033 33.333 0.00 0.00 0.00 2.66
178 179 1.135333 CTAAGCCGTCCTCAACTCCTC 59.865 57.143 0.00 0.00 0.00 3.71
179 180 1.187087 CTAAGCCGTCCTCAACTCCT 58.813 55.000 0.00 0.00 0.00 3.69
180 181 0.460459 GCTAAGCCGTCCTCAACTCC 60.460 60.000 0.00 0.00 0.00 3.85
181 182 0.533032 AGCTAAGCCGTCCTCAACTC 59.467 55.000 0.00 0.00 0.00 3.01
182 183 0.247736 CAGCTAAGCCGTCCTCAACT 59.752 55.000 0.00 0.00 0.00 3.16
183 184 0.741221 CCAGCTAAGCCGTCCTCAAC 60.741 60.000 0.00 0.00 0.00 3.18
184 185 0.902984 TCCAGCTAAGCCGTCCTCAA 60.903 55.000 0.00 0.00 0.00 3.02
185 186 1.304962 TCCAGCTAAGCCGTCCTCA 60.305 57.895 0.00 0.00 0.00 3.86
212 213 8.703743 AGAAAAGATAATACATCTCTGAGCACT 58.296 33.333 0.00 0.00 0.00 4.40
274 285 0.238289 AAGCACACAATTCCGCTTCG 59.762 50.000 0.00 0.00 40.60 3.79
299 310 1.168714 ATGGCAAACGAAAGGCTCTC 58.831 50.000 0.00 0.00 0.00 3.20
302 313 1.270550 CTGAATGGCAAACGAAAGGCT 59.729 47.619 0.00 0.00 0.00 4.58
310 321 5.382618 AATCACTTCTCTGAATGGCAAAC 57.617 39.130 0.00 0.00 0.00 2.93
332 343 9.423964 TGAATCCATCTCAATGATAATTGGAAA 57.576 29.630 2.80 0.00 34.80 3.13
361 372 3.076621 CTGGATAAGCTTGACTGCAACA 58.923 45.455 9.86 0.00 34.99 3.33
368 379 1.936547 CTTCGCCTGGATAAGCTTGAC 59.063 52.381 9.86 2.57 0.00 3.18
369 380 1.134401 CCTTCGCCTGGATAAGCTTGA 60.134 52.381 9.86 0.00 0.00 3.02
370 381 1.134401 TCCTTCGCCTGGATAAGCTTG 60.134 52.381 9.86 0.00 0.00 4.01
371 382 1.204146 TCCTTCGCCTGGATAAGCTT 58.796 50.000 3.48 3.48 0.00 3.74
372 383 1.204146 TTCCTTCGCCTGGATAAGCT 58.796 50.000 0.00 0.00 33.09 3.74
373 384 1.671328 GTTTCCTTCGCCTGGATAAGC 59.329 52.381 0.00 0.00 33.09 3.09
374 385 2.939103 CTGTTTCCTTCGCCTGGATAAG 59.061 50.000 0.00 0.00 33.09 1.73
375 386 2.569853 TCTGTTTCCTTCGCCTGGATAA 59.430 45.455 0.00 0.00 33.09 1.75
376 387 2.184533 TCTGTTTCCTTCGCCTGGATA 58.815 47.619 0.00 0.00 33.09 2.59
377 388 0.984230 TCTGTTTCCTTCGCCTGGAT 59.016 50.000 0.00 0.00 33.09 3.41
378 389 0.984230 ATCTGTTTCCTTCGCCTGGA 59.016 50.000 0.00 0.00 0.00 3.86
379 390 2.168521 TCTATCTGTTTCCTTCGCCTGG 59.831 50.000 0.00 0.00 0.00 4.45
380 391 3.526931 TCTATCTGTTTCCTTCGCCTG 57.473 47.619 0.00 0.00 0.00 4.85
381 392 3.243569 CGATCTATCTGTTTCCTTCGCCT 60.244 47.826 0.00 0.00 0.00 5.52
382 393 3.053455 CGATCTATCTGTTTCCTTCGCC 58.947 50.000 0.00 0.00 0.00 5.54
383 394 3.966154 TCGATCTATCTGTTTCCTTCGC 58.034 45.455 0.00 0.00 0.00 4.70
384 395 6.007936 AGATCGATCTATCTGTTTCCTTCG 57.992 41.667 26.27 0.00 34.87 3.79
385 396 9.187455 GTAAAGATCGATCTATCTGTTTCCTTC 57.813 37.037 27.52 5.83 36.34 3.46
386 397 8.919145 AGTAAAGATCGATCTATCTGTTTCCTT 58.081 33.333 27.52 15.80 36.34 3.36
387 398 8.472007 AGTAAAGATCGATCTATCTGTTTCCT 57.528 34.615 27.52 10.86 36.34 3.36
388 399 9.187455 GAAGTAAAGATCGATCTATCTGTTTCC 57.813 37.037 27.52 8.79 36.34 3.13
389 400 9.737427 TGAAGTAAAGATCGATCTATCTGTTTC 57.263 33.333 27.52 22.45 36.34 2.78
401 412 9.534565 CTCCTTGATAAATGAAGTAAAGATCGA 57.465 33.333 0.00 0.00 0.00 3.59
402 413 9.534565 TCTCCTTGATAAATGAAGTAAAGATCG 57.465 33.333 0.00 0.00 0.00 3.69
431 442 9.396022 ACATTCACGAAGATTCATAAAATACCT 57.604 29.630 0.00 0.00 0.00 3.08
440 451 9.383519 AGTAATACAACATTCACGAAGATTCAT 57.616 29.630 0.00 0.00 0.00 2.57
441 452 8.771920 AGTAATACAACATTCACGAAGATTCA 57.228 30.769 0.00 0.00 0.00 2.57
444 455 9.817809 ACATAGTAATACAACATTCACGAAGAT 57.182 29.630 0.00 0.00 0.00 2.40
447 458 9.027129 GCTACATAGTAATACAACATTCACGAA 57.973 33.333 0.00 0.00 0.00 3.85
448 459 8.410912 AGCTACATAGTAATACAACATTCACGA 58.589 33.333 0.00 0.00 0.00 4.35
449 460 8.575565 AGCTACATAGTAATACAACATTCACG 57.424 34.615 0.00 0.00 0.00 4.35
450 461 8.691727 CGAGCTACATAGTAATACAACATTCAC 58.308 37.037 0.00 0.00 0.00 3.18
451 462 7.381408 GCGAGCTACATAGTAATACAACATTCA 59.619 37.037 0.00 0.00 0.00 2.57
452 463 7.595502 AGCGAGCTACATAGTAATACAACATTC 59.404 37.037 0.00 0.00 0.00 2.67
453 464 7.434492 AGCGAGCTACATAGTAATACAACATT 58.566 34.615 0.00 0.00 0.00 2.71
454 465 6.982852 AGCGAGCTACATAGTAATACAACAT 58.017 36.000 0.00 0.00 0.00 2.71
455 466 6.038936 TGAGCGAGCTACATAGTAATACAACA 59.961 38.462 0.00 0.00 0.00 3.33
456 467 6.360148 GTGAGCGAGCTACATAGTAATACAAC 59.640 42.308 0.00 0.00 0.00 3.32
457 468 6.038936 TGTGAGCGAGCTACATAGTAATACAA 59.961 38.462 0.00 0.00 0.00 2.41
458 469 5.529800 TGTGAGCGAGCTACATAGTAATACA 59.470 40.000 0.00 0.00 0.00 2.29
459 470 5.998553 TGTGAGCGAGCTACATAGTAATAC 58.001 41.667 0.00 0.00 0.00 1.89
460 471 6.628919 TTGTGAGCGAGCTACATAGTAATA 57.371 37.500 0.00 0.00 0.00 0.98
461 472 5.515797 TTGTGAGCGAGCTACATAGTAAT 57.484 39.130 0.00 0.00 0.00 1.89
462 473 4.976224 TTGTGAGCGAGCTACATAGTAA 57.024 40.909 0.00 0.00 0.00 2.24
463 474 4.976224 TTTGTGAGCGAGCTACATAGTA 57.024 40.909 0.00 0.00 0.00 1.82
464 475 3.868757 TTTGTGAGCGAGCTACATAGT 57.131 42.857 0.00 0.00 0.00 2.12
465 476 6.209361 TCTATTTTGTGAGCGAGCTACATAG 58.791 40.000 0.00 3.49 0.00 2.23
466 477 6.144078 TCTATTTTGTGAGCGAGCTACATA 57.856 37.500 0.00 0.00 0.00 2.29
467 478 5.011090 TCTATTTTGTGAGCGAGCTACAT 57.989 39.130 0.00 0.00 0.00 2.29
468 479 4.082190 ACTCTATTTTGTGAGCGAGCTACA 60.082 41.667 0.00 0.80 33.92 2.74
469 480 4.425520 ACTCTATTTTGTGAGCGAGCTAC 58.574 43.478 0.00 0.00 33.92 3.58
470 481 4.720649 ACTCTATTTTGTGAGCGAGCTA 57.279 40.909 0.00 0.00 33.92 3.32
471 482 3.601443 ACTCTATTTTGTGAGCGAGCT 57.399 42.857 0.00 0.00 33.92 4.09
472 483 4.865365 ACTAACTCTATTTTGTGAGCGAGC 59.135 41.667 0.00 0.00 33.92 5.03
473 484 6.093404 TCACTAACTCTATTTTGTGAGCGAG 58.907 40.000 0.00 0.00 36.65 5.03
474 485 6.020971 TCACTAACTCTATTTTGTGAGCGA 57.979 37.500 0.00 0.00 36.65 4.93
475 486 6.893958 ATCACTAACTCTATTTTGTGAGCG 57.106 37.500 6.36 0.00 42.08 5.03
476 487 8.934507 ACTATCACTAACTCTATTTTGTGAGC 57.065 34.615 6.36 0.00 42.08 4.26
489 500 9.535878 GCAAAATTAGCTAGACTATCACTAACT 57.464 33.333 0.00 0.00 0.00 2.24
490 501 9.535878 AGCAAAATTAGCTAGACTATCACTAAC 57.464 33.333 3.68 0.00 41.32 2.34
491 502 9.751542 GAGCAAAATTAGCTAGACTATCACTAA 57.248 33.333 5.40 0.00 43.58 2.24
492 503 8.914011 TGAGCAAAATTAGCTAGACTATCACTA 58.086 33.333 5.40 0.00 43.58 2.74
493 504 7.786030 TGAGCAAAATTAGCTAGACTATCACT 58.214 34.615 5.40 0.00 43.58 3.41
494 505 8.600449 ATGAGCAAAATTAGCTAGACTATCAC 57.400 34.615 5.40 0.00 43.58 3.06
495 506 9.698309 GTATGAGCAAAATTAGCTAGACTATCA 57.302 33.333 5.40 0.00 43.58 2.15
496 507 9.921637 AGTATGAGCAAAATTAGCTAGACTATC 57.078 33.333 5.40 0.00 43.58 2.08
497 508 9.703892 CAGTATGAGCAAAATTAGCTAGACTAT 57.296 33.333 5.40 0.56 43.58 2.12
498 509 8.914011 TCAGTATGAGCAAAATTAGCTAGACTA 58.086 33.333 5.40 0.00 42.56 2.59
499 510 7.786030 TCAGTATGAGCAAAATTAGCTAGACT 58.214 34.615 5.40 6.61 42.56 3.24
514 525 2.094182 TGGTTCTCCGTTCAGTATGAGC 60.094 50.000 0.00 0.00 43.45 4.26
515 526 3.868757 TGGTTCTCCGTTCAGTATGAG 57.131 47.619 0.00 0.00 41.30 2.90
516 527 3.767131 TCATGGTTCTCCGTTCAGTATGA 59.233 43.478 0.00 0.00 39.30 2.15
517 528 3.865745 GTCATGGTTCTCCGTTCAGTATG 59.134 47.826 0.00 0.00 36.30 2.39
518 529 3.769844 AGTCATGGTTCTCCGTTCAGTAT 59.230 43.478 0.00 0.00 36.30 2.12
519 530 3.162666 AGTCATGGTTCTCCGTTCAGTA 58.837 45.455 0.00 0.00 36.30 2.74
520 531 1.971357 AGTCATGGTTCTCCGTTCAGT 59.029 47.619 0.00 0.00 36.30 3.41
521 532 2.738846 CAAGTCATGGTTCTCCGTTCAG 59.261 50.000 0.00 0.00 36.30 3.02
522 533 2.549992 CCAAGTCATGGTTCTCCGTTCA 60.550 50.000 0.00 0.00 44.85 3.18
523 534 2.076863 CCAAGTCATGGTTCTCCGTTC 58.923 52.381 0.00 0.00 44.85 3.95
524 535 2.185004 CCAAGTCATGGTTCTCCGTT 57.815 50.000 0.00 0.00 44.85 4.44
525 536 3.935993 CCAAGTCATGGTTCTCCGT 57.064 52.632 0.00 0.00 44.85 4.69
528 539 7.037114 AGAACCTACCCAAGTCATGGTTCTC 62.037 48.000 16.52 0.00 46.66 2.87
534 545 2.941415 GCCAGAACCTACCCAAGTCATG 60.941 54.545 0.00 0.00 0.00 3.07
535 546 1.282157 GCCAGAACCTACCCAAGTCAT 59.718 52.381 0.00 0.00 0.00 3.06
536 547 0.690762 GCCAGAACCTACCCAAGTCA 59.309 55.000 0.00 0.00 0.00 3.41
537 548 0.035343 GGCCAGAACCTACCCAAGTC 60.035 60.000 0.00 0.00 0.00 3.01
538 549 1.498176 GGGCCAGAACCTACCCAAGT 61.498 60.000 4.39 0.00 42.33 3.16
539 550 1.208165 AGGGCCAGAACCTACCCAAG 61.208 60.000 6.18 0.00 45.45 3.61
540 551 1.151677 AGGGCCAGAACCTACCCAA 60.152 57.895 6.18 0.00 45.45 4.12
541 552 1.923395 CAGGGCCAGAACCTACCCA 60.923 63.158 6.18 0.00 45.45 4.51
542 553 0.988678 ATCAGGGCCAGAACCTACCC 60.989 60.000 6.18 0.00 43.17 3.69
543 554 0.181350 CATCAGGGCCAGAACCTACC 59.819 60.000 6.18 0.00 36.32 3.18
544 555 1.139853 CTCATCAGGGCCAGAACCTAC 59.860 57.143 6.18 0.00 36.32 3.18
545 556 1.273838 ACTCATCAGGGCCAGAACCTA 60.274 52.381 6.18 0.00 36.32 3.08
546 557 0.548682 ACTCATCAGGGCCAGAACCT 60.549 55.000 6.18 0.00 39.43 3.50
547 558 0.107459 GACTCATCAGGGCCAGAACC 60.107 60.000 6.18 0.00 0.00 3.62
548 559 0.908198 AGACTCATCAGGGCCAGAAC 59.092 55.000 6.18 0.00 0.00 3.01
549 560 0.907486 CAGACTCATCAGGGCCAGAA 59.093 55.000 6.18 0.00 0.00 3.02
550 561 0.252421 ACAGACTCATCAGGGCCAGA 60.252 55.000 6.18 2.67 0.00 3.86
551 562 0.177604 GACAGACTCATCAGGGCCAG 59.822 60.000 6.18 0.00 0.00 4.85
552 563 1.607801 CGACAGACTCATCAGGGCCA 61.608 60.000 6.18 0.00 0.00 5.36
553 564 1.142748 CGACAGACTCATCAGGGCC 59.857 63.158 0.00 0.00 0.00 5.80
554 565 0.459237 CACGACAGACTCATCAGGGC 60.459 60.000 0.00 0.00 0.00 5.19
555 566 0.459237 GCACGACAGACTCATCAGGG 60.459 60.000 0.00 0.00 0.00 4.45
556 567 0.529833 AGCACGACAGACTCATCAGG 59.470 55.000 0.00 0.00 0.00 3.86
557 568 2.794282 GCTAGCACGACAGACTCATCAG 60.794 54.545 10.63 0.00 0.00 2.90
558 569 1.133216 GCTAGCACGACAGACTCATCA 59.867 52.381 10.63 0.00 0.00 3.07
559 570 1.403679 AGCTAGCACGACAGACTCATC 59.596 52.381 18.83 0.00 0.00 2.92
560 571 1.133982 CAGCTAGCACGACAGACTCAT 59.866 52.381 18.83 0.00 0.00 2.90
561 572 0.523519 CAGCTAGCACGACAGACTCA 59.476 55.000 18.83 0.00 0.00 3.41
562 573 0.800300 GCAGCTAGCACGACAGACTC 60.800 60.000 18.83 0.00 44.79 3.36
563 574 1.214062 GCAGCTAGCACGACAGACT 59.786 57.895 18.83 0.00 44.79 3.24
564 575 3.773974 GCAGCTAGCACGACAGAC 58.226 61.111 18.83 0.00 44.79 3.51
573 584 5.178438 GTCCTTACAATTATGAGCAGCTAGC 59.822 44.000 6.62 6.62 46.19 3.42
574 585 6.520272 AGTCCTTACAATTATGAGCAGCTAG 58.480 40.000 0.00 0.00 0.00 3.42
575 586 6.485830 AGTCCTTACAATTATGAGCAGCTA 57.514 37.500 0.00 0.00 0.00 3.32
576 587 5.365021 AGTCCTTACAATTATGAGCAGCT 57.635 39.130 0.00 0.00 0.00 4.24
577 588 5.220931 CCAAGTCCTTACAATTATGAGCAGC 60.221 44.000 0.00 0.00 0.00 5.25
578 589 5.882557 ACCAAGTCCTTACAATTATGAGCAG 59.117 40.000 0.00 0.00 0.00 4.24
579 590 5.647658 CACCAAGTCCTTACAATTATGAGCA 59.352 40.000 0.00 0.00 0.00 4.26
580 591 5.880332 TCACCAAGTCCTTACAATTATGAGC 59.120 40.000 0.00 0.00 0.00 4.26
581 592 7.106239 ACTCACCAAGTCCTTACAATTATGAG 58.894 38.462 0.00 0.00 30.02 2.90
582 593 7.016153 ACTCACCAAGTCCTTACAATTATGA 57.984 36.000 0.00 0.00 30.02 2.15
583 594 7.390440 TCAACTCACCAAGTCCTTACAATTATG 59.610 37.037 0.00 0.00 37.17 1.90
584 595 7.458397 TCAACTCACCAAGTCCTTACAATTAT 58.542 34.615 0.00 0.00 37.17 1.28
585 596 6.833041 TCAACTCACCAAGTCCTTACAATTA 58.167 36.000 0.00 0.00 37.17 1.40
586 597 5.690865 TCAACTCACCAAGTCCTTACAATT 58.309 37.500 0.00 0.00 37.17 2.32
587 598 5.163195 ACTCAACTCACCAAGTCCTTACAAT 60.163 40.000 0.00 0.00 37.17 2.71
588 599 4.163458 ACTCAACTCACCAAGTCCTTACAA 59.837 41.667 0.00 0.00 37.17 2.41
589 600 3.709653 ACTCAACTCACCAAGTCCTTACA 59.290 43.478 0.00 0.00 37.17 2.41
590 601 4.338379 ACTCAACTCACCAAGTCCTTAC 57.662 45.455 0.00 0.00 37.17 2.34
591 602 6.681729 ATTACTCAACTCACCAAGTCCTTA 57.318 37.500 0.00 0.00 37.17 2.69
592 603 5.568620 ATTACTCAACTCACCAAGTCCTT 57.431 39.130 0.00 0.00 37.17 3.36
593 604 5.542635 TGTATTACTCAACTCACCAAGTCCT 59.457 40.000 0.00 0.00 37.17 3.85
594 605 5.790593 TGTATTACTCAACTCACCAAGTCC 58.209 41.667 0.00 0.00 37.17 3.85
595 606 7.907214 ATTGTATTACTCAACTCACCAAGTC 57.093 36.000 0.00 0.00 37.17 3.01
596 607 9.959721 ATAATTGTATTACTCAACTCACCAAGT 57.040 29.630 0.00 0.00 41.10 3.16
604 615 8.889717 CGGGTGAAATAATTGTATTACTCAACT 58.110 33.333 0.00 0.00 30.03 3.16
605 616 7.642586 GCGGGTGAAATAATTGTATTACTCAAC 59.357 37.037 0.00 0.00 29.03 3.18
606 617 7.337184 TGCGGGTGAAATAATTGTATTACTCAA 59.663 33.333 0.00 0.00 29.41 3.02
607 618 6.824196 TGCGGGTGAAATAATTGTATTACTCA 59.176 34.615 0.00 0.00 29.41 3.41
608 619 7.254227 TGCGGGTGAAATAATTGTATTACTC 57.746 36.000 0.00 0.00 29.41 2.59
609 620 7.633193 TTGCGGGTGAAATAATTGTATTACT 57.367 32.000 0.00 0.00 29.41 2.24
610 621 8.690680 TTTTGCGGGTGAAATAATTGTATTAC 57.309 30.769 0.00 0.00 29.41 1.89
672 683 3.000727 CACGGATTACTCAACCTCAACC 58.999 50.000 0.00 0.00 0.00 3.77
673 684 3.660865 ACACGGATTACTCAACCTCAAC 58.339 45.455 0.00 0.00 0.00 3.18
674 685 4.768448 TCTACACGGATTACTCAACCTCAA 59.232 41.667 0.00 0.00 0.00 3.02
675 686 4.157289 GTCTACACGGATTACTCAACCTCA 59.843 45.833 0.00 0.00 0.00 3.86
676 687 4.157289 TGTCTACACGGATTACTCAACCTC 59.843 45.833 0.00 0.00 0.00 3.85
691 702 1.068055 CCCGTGTGGTAGTGTCTACAC 60.068 57.143 5.07 5.07 46.77 2.90
718 736 0.968405 GCTGCAAAAGGGATTGGTCA 59.032 50.000 0.00 0.00 0.00 4.02
720 738 1.620323 GAAGCTGCAAAAGGGATTGGT 59.380 47.619 1.02 0.00 0.00 3.67
721 739 1.619827 TGAAGCTGCAAAAGGGATTGG 59.380 47.619 1.02 0.00 0.00 3.16
722 740 3.056393 TGATGAAGCTGCAAAAGGGATTG 60.056 43.478 0.00 0.00 0.00 2.67
723 741 3.167485 TGATGAAGCTGCAAAAGGGATT 58.833 40.909 0.00 0.00 0.00 3.01
726 748 1.891150 ACTGATGAAGCTGCAAAAGGG 59.109 47.619 0.00 0.00 0.00 3.95
729 751 3.888323 TGGTAACTGATGAAGCTGCAAAA 59.112 39.130 0.00 0.00 37.61 2.44
733 755 1.399791 GCTGGTAACTGATGAAGCTGC 59.600 52.381 0.00 0.00 37.83 5.25
830 855 0.541863 AGCAGAAATGTAGACCCGGG 59.458 55.000 22.25 22.25 0.00 5.73
831 856 1.207089 TCAGCAGAAATGTAGACCCGG 59.793 52.381 0.00 0.00 0.00 5.73
838 952 2.019249 GCAGGCATCAGCAGAAATGTA 58.981 47.619 0.00 0.00 44.61 2.29
859 973 2.677836 GAGTGCAATTATTCACGGCAGA 59.322 45.455 0.00 0.00 38.19 4.26
937 1051 2.105649 GGGAAGGTGAGAATGGGAGATC 59.894 54.545 0.00 0.00 0.00 2.75
1045 1162 4.836125 CACAAACAAAGATACTGTGCCT 57.164 40.909 0.00 0.00 31.83 4.75
1059 1176 1.879380 GGCTACATCACTGCACAAACA 59.121 47.619 0.00 0.00 0.00 2.83
1060 1177 2.095567 CAGGCTACATCACTGCACAAAC 60.096 50.000 0.00 0.00 0.00 2.93
1061 1178 2.153645 CAGGCTACATCACTGCACAAA 58.846 47.619 0.00 0.00 0.00 2.83
1062 1179 1.611410 CCAGGCTACATCACTGCACAA 60.611 52.381 0.00 0.00 0.00 3.33
1063 1180 0.036105 CCAGGCTACATCACTGCACA 60.036 55.000 0.00 0.00 0.00 4.57
1122 1239 0.390124 AAAGGCACACGACGTTAGGA 59.610 50.000 0.00 0.00 0.00 2.94
1123 1240 0.788391 GAAAGGCACACGACGTTAGG 59.212 55.000 0.00 0.00 0.00 2.69
1124 1241 1.455786 CAGAAAGGCACACGACGTTAG 59.544 52.381 0.00 0.00 0.00 2.34
1125 1242 1.202440 ACAGAAAGGCACACGACGTTA 60.202 47.619 0.00 0.00 0.00 3.18
1126 1243 0.461339 ACAGAAAGGCACACGACGTT 60.461 50.000 0.00 0.00 0.00 3.99
1127 1244 0.386476 TACAGAAAGGCACACGACGT 59.614 50.000 0.00 0.00 0.00 4.34
1128 1245 1.493772 TTACAGAAAGGCACACGACG 58.506 50.000 0.00 0.00 0.00 5.12
1129 1246 4.483476 AAATTACAGAAAGGCACACGAC 57.517 40.909 0.00 0.00 0.00 4.34
1130 1247 5.527951 TGTTAAATTACAGAAAGGCACACGA 59.472 36.000 0.00 0.00 0.00 4.35
1131 1248 5.753744 TGTTAAATTACAGAAAGGCACACG 58.246 37.500 0.00 0.00 0.00 4.49
1132 1249 9.289303 CATATGTTAAATTACAGAAAGGCACAC 57.711 33.333 0.00 0.00 0.00 3.82
1133 1250 7.973388 GCATATGTTAAATTACAGAAAGGCACA 59.027 33.333 4.29 0.00 0.00 4.57
1144 1261 5.147162 GGAGCTGCGCATATGTTAAATTAC 58.853 41.667 12.24 0.00 0.00 1.89
1145 1262 4.215399 GGGAGCTGCGCATATGTTAAATTA 59.785 41.667 12.24 0.00 0.00 1.40
1146 1263 3.004734 GGGAGCTGCGCATATGTTAAATT 59.995 43.478 12.24 0.00 0.00 1.82
1148 1265 1.946768 GGGAGCTGCGCATATGTTAAA 59.053 47.619 12.24 0.00 0.00 1.52
1151 1268 1.526917 GGGGAGCTGCGCATATGTT 60.527 57.895 12.24 0.00 0.00 2.71
1257 1396 2.032636 GCAGTGCAATTTGGTTTCTTGC 60.033 45.455 11.09 0.00 44.25 4.01
1290 1429 9.827411 GAACTGGAAAGTTGTAATCAAGAATAC 57.173 33.333 0.00 0.00 33.97 1.89
1291 1430 9.793259 AGAACTGGAAAGTTGTAATCAAGAATA 57.207 29.630 0.00 0.00 33.97 1.75
1292 1431 8.571336 CAGAACTGGAAAGTTGTAATCAAGAAT 58.429 33.333 0.00 0.00 33.97 2.40
1293 1432 7.468631 GCAGAACTGGAAAGTTGTAATCAAGAA 60.469 37.037 3.99 0.00 33.97 2.52
1294 1433 6.017109 GCAGAACTGGAAAGTTGTAATCAAGA 60.017 38.462 3.99 0.00 33.97 3.02
1295 1434 6.145535 GCAGAACTGGAAAGTTGTAATCAAG 58.854 40.000 3.99 0.00 33.97 3.02
1296 1435 5.592282 TGCAGAACTGGAAAGTTGTAATCAA 59.408 36.000 3.99 0.00 31.35 2.57
1297 1436 5.008613 GTGCAGAACTGGAAAGTTGTAATCA 59.991 40.000 3.99 0.00 31.21 2.57
1298 1437 5.008613 TGTGCAGAACTGGAAAGTTGTAATC 59.991 40.000 3.99 0.00 31.21 1.75
1299 1438 4.887071 TGTGCAGAACTGGAAAGTTGTAAT 59.113 37.500 3.99 0.00 31.21 1.89
1300 1439 4.265893 TGTGCAGAACTGGAAAGTTGTAA 58.734 39.130 3.99 0.00 31.21 2.41
1301 1440 3.876914 CTGTGCAGAACTGGAAAGTTGTA 59.123 43.478 5.53 0.00 32.36 2.41
1303 1442 2.945008 TCTGTGCAGAACTGGAAAGTTG 59.055 45.455 12.00 0.00 37.50 3.16
1310 1464 2.082231 CCTTGATCTGTGCAGAACTGG 58.918 52.381 5.95 6.79 41.36 4.00
1313 1467 1.271597 ACCCCTTGATCTGTGCAGAAC 60.272 52.381 5.95 4.35 41.36 3.01
1332 1486 8.442384 CACCAAGCAAATAAAATACCAAATCAC 58.558 33.333 0.00 0.00 0.00 3.06
1334 1488 8.546597 ACACCAAGCAAATAAAATACCAAATC 57.453 30.769 0.00 0.00 0.00 2.17
1336 1490 8.091449 CCTACACCAAGCAAATAAAATACCAAA 58.909 33.333 0.00 0.00 0.00 3.28
1355 1516 2.691409 TGCAAGATACAGCCTACACC 57.309 50.000 0.00 0.00 0.00 4.16
1517 1687 3.733337 CATAGGACCACTGAAGGCATAC 58.267 50.000 0.00 0.00 0.00 2.39
1616 1786 1.377333 GTACCAAGCTGGCCTGTCC 60.377 63.158 11.69 0.00 42.67 4.02
1914 4638 3.797256 CCGACAAAATTTTGCACCGTTTA 59.203 39.130 26.94 0.00 41.79 2.01
1918 4642 1.520590 CACCGACAAAATTTTGCACCG 59.479 47.619 26.94 24.54 41.79 4.94
1919 4643 1.864082 CCACCGACAAAATTTTGCACC 59.136 47.619 26.94 16.51 41.79 5.01
1935 4758 5.110940 TGAACGCAAACTTTAATACCACC 57.889 39.130 0.00 0.00 0.00 4.61
2141 5079 9.685276 ATGGAAGACATGACATGAGTAAATTAA 57.315 29.630 22.19 0.05 38.70 1.40
2146 5084 6.763135 GCTAATGGAAGACATGACATGAGTAA 59.237 38.462 22.19 3.05 40.44 2.24
2148 5086 5.104610 AGCTAATGGAAGACATGACATGAGT 60.105 40.000 22.19 5.51 40.44 3.41
2235 5241 5.003804 GTGGAGTGACATACCAAACTGAAT 58.996 41.667 5.37 0.00 35.40 2.57
2355 5393 6.920569 AACCTTTCGATGAATGGTACATAC 57.079 37.500 15.02 0.00 45.28 2.39
2502 5540 7.148641 CACTATACAGTCTTGTCAGAACAACT 58.851 38.462 0.00 0.00 35.00 3.16
2515 5553 6.680540 AGGGGTATGTTACACTATACAGTCT 58.319 40.000 0.00 0.00 32.68 3.24
2517 5555 7.589993 ACTAGGGGTATGTTACACTATACAGT 58.410 38.462 0.00 0.00 32.68 3.55
2586 5624 4.821805 ACCTTGTTCACTTCCTGTAACATG 59.178 41.667 0.00 0.00 32.31 3.21
2632 5670 3.456644 TCAAGTAGAAACTGTGGGTCCAA 59.543 43.478 0.00 0.00 35.62 3.53
2649 5687 7.255730 CCAAACTTCTCCTTCATTTGATCAAGT 60.256 37.037 8.41 2.46 33.08 3.16
2676 5714 6.091437 CCGAGATATAAGGAAACATCGTACC 58.909 44.000 0.00 0.00 0.00 3.34
2684 5722 3.927142 CCGATGCCGAGATATAAGGAAAC 59.073 47.826 0.00 0.00 38.22 2.78
2701 5739 3.517602 TGGAAGATAACACGAACCGATG 58.482 45.455 0.00 0.00 0.00 3.84
2702 5740 3.880047 TGGAAGATAACACGAACCGAT 57.120 42.857 0.00 0.00 0.00 4.18
2717 5755 7.248437 GTGTAAGTTTTTATCGGGATTGGAAG 58.752 38.462 0.00 0.00 0.00 3.46
2735 5773 9.659830 CTGAAAAGTTAAAATTAGCGTGTAAGT 57.340 29.630 0.00 0.00 0.00 2.24
2898 5936 8.822805 ACCCAGTTTGTCTGTTTATTCTCTATA 58.177 33.333 0.00 0.00 42.19 1.31
2900 5938 7.016268 AGACCCAGTTTGTCTGTTTATTCTCTA 59.984 37.037 0.00 0.00 41.40 2.43
2902 5940 5.998363 AGACCCAGTTTGTCTGTTTATTCTC 59.002 40.000 0.00 0.00 41.40 2.87
2903 5941 5.941788 AGACCCAGTTTGTCTGTTTATTCT 58.058 37.500 0.00 0.00 41.40 2.40
2904 5942 6.635030 AAGACCCAGTTTGTCTGTTTATTC 57.365 37.500 0.00 0.00 42.10 1.75
2907 5945 7.057894 ACAATAAGACCCAGTTTGTCTGTTTA 58.942 34.615 0.00 0.00 42.10 2.01
2909 5947 5.445964 ACAATAAGACCCAGTTTGTCTGTT 58.554 37.500 0.00 0.00 42.10 3.16
2939 5981 9.261180 GAATGATCATCCTTTACGAGACAATAA 57.739 33.333 9.06 0.00 0.00 1.40
2957 5999 8.274259 GCATTCAGCACAACTCAGAATGATCA 62.274 42.308 15.30 0.00 44.68 2.92
3020 6074 7.390718 GTGTGGACAACTAAAATTGATAGGAGT 59.609 37.037 4.18 2.32 33.57 3.85
3104 6158 2.615447 AGCGAACGCATGAATGATGAAT 59.385 40.909 20.66 0.00 44.88 2.57
3105 6159 2.009051 AGCGAACGCATGAATGATGAA 58.991 42.857 20.66 0.00 44.88 2.57
3106 6160 1.594397 GAGCGAACGCATGAATGATGA 59.406 47.619 20.66 0.00 44.88 2.92
3107 6161 1.655600 CGAGCGAACGCATGAATGATG 60.656 52.381 20.66 0.00 44.88 3.07
3108 6162 0.578683 CGAGCGAACGCATGAATGAT 59.421 50.000 20.66 0.00 44.88 2.45
3109 6163 1.420641 CCGAGCGAACGCATGAATGA 61.421 55.000 20.66 0.00 44.88 2.57
3110 6164 1.011904 CCGAGCGAACGCATGAATG 60.012 57.895 20.66 4.16 44.88 2.67
3173 6227 1.003839 GGACAGGTTCGTGGCATCA 60.004 57.895 0.00 0.00 0.00 3.07
3182 6236 4.038162 ACATAGAGCGATTAGGACAGGTTC 59.962 45.833 0.00 0.00 0.00 3.62
3210 6264 2.606378 ACTGGGAAGAAACTACGAGGT 58.394 47.619 0.00 0.00 0.00 3.85
3228 6282 5.104900 ACATTTCAATTAGGAGCCTCGTACT 60.105 40.000 0.00 0.00 0.00 2.73
3237 6324 7.277098 CCAAGCATTTCACATTTCAATTAGGAG 59.723 37.037 0.00 0.00 0.00 3.69
3247 6334 2.224018 ACACGCCAAGCATTTCACATTT 60.224 40.909 0.00 0.00 0.00 2.32
3248 6335 1.340889 ACACGCCAAGCATTTCACATT 59.659 42.857 0.00 0.00 0.00 2.71
3249 6336 0.961019 ACACGCCAAGCATTTCACAT 59.039 45.000 0.00 0.00 0.00 3.21
3250 6337 1.265635 GTACACGCCAAGCATTTCACA 59.734 47.619 0.00 0.00 0.00 3.58
3251 6338 1.724654 CGTACACGCCAAGCATTTCAC 60.725 52.381 0.00 0.00 0.00 3.18
3252 6339 0.515127 CGTACACGCCAAGCATTTCA 59.485 50.000 0.00 0.00 0.00 2.69
3253 6340 0.515564 ACGTACACGCCAAGCATTTC 59.484 50.000 0.85 0.00 44.43 2.17
3254 6341 0.948678 AACGTACACGCCAAGCATTT 59.051 45.000 0.85 0.00 44.43 2.32
3255 6342 0.515564 GAACGTACACGCCAAGCATT 59.484 50.000 0.85 0.00 44.43 3.56
3256 6343 0.601576 TGAACGTACACGCCAAGCAT 60.602 50.000 0.85 0.00 44.43 3.79
3264 6351 0.701303 GAGCTCGTTGAACGTACACG 59.299 55.000 17.86 7.56 43.14 4.49
3267 6354 1.337821 CTGGAGCTCGTTGAACGTAC 58.662 55.000 17.86 10.75 43.14 3.67
3271 6358 0.390472 CTCCCTGGAGCTCGTTGAAC 60.390 60.000 7.83 0.00 35.31 3.18
3294 6381 2.377628 TTTGGTCCGCAGCTCTTCGT 62.378 55.000 0.00 0.00 0.00 3.85
3296 6383 0.603975 ACTTTGGTCCGCAGCTCTTC 60.604 55.000 0.00 0.00 0.00 2.87
3304 6391 1.228657 GGACAGTGACTTTGGTCCGC 61.229 60.000 5.03 0.00 40.29 5.54
3366 6457 3.800929 TTAGTCGGCATCGTACTATCG 57.199 47.619 0.00 0.00 37.69 2.92
3367 6458 5.458891 ACAATTAGTCGGCATCGTACTATC 58.541 41.667 0.00 0.00 37.69 2.08
3368 6459 5.449107 ACAATTAGTCGGCATCGTACTAT 57.551 39.130 0.00 0.00 37.69 2.12
3388 6523 2.434185 GCACATTCGCCGGAGACA 60.434 61.111 7.66 0.00 0.00 3.41
3399 6534 2.771089 CCACGATATAGGCTGCACATT 58.229 47.619 0.50 0.00 0.00 2.71
3423 6558 4.101790 GCCATGTCACGGCGGTTG 62.102 66.667 13.24 0.45 40.35 3.77
3521 6671 6.073711 GGAGAAGTACGAAGAAAACTTTGAGG 60.074 42.308 0.00 0.00 33.72 3.86
3577 6750 5.050490 AGCGTATATAAAGCACTTCCACTG 58.950 41.667 12.29 0.00 0.00 3.66
3580 6753 6.575267 TGTAAGCGTATATAAAGCACTTCCA 58.425 36.000 12.29 1.87 0.00 3.53
3634 6807 1.678627 GCTAGTGATCAAGGAGCTCGA 59.321 52.381 7.83 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.