>input_sequence_43820
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----------------------------------------------------------------------------ATGG
CAACCGCCGTTCCACCGATCATGTGAGTGAGCGAAGCAGCAAGGCACAGTATCTTTGTTTGTGCAGTGATGTAGCCTGGC
GCTCTGGCCGTTCCGGATCTCGACTAAATTACTCGATTTCCTAACGTCGTGTGCCTTTCTGTAATTTA------------
---------ACATATGCGCAGCTCCCCGAAGGAAGATCTCCCCCCTCCACTGACCTCCGCCTCCGAGCCCCCTCCGCTCT
TCGACGGCACCACCAGGT-AAAATCTAACCACACAGCAAGAAACCAAATTGCACTGCAGGTGTATCTTGTATTCTTGATT
ACAA---------------CTTTCCAGTTCTGCACAGATCAAGGGGTGATTTGGTATTTTATTTGCT-------TGGTGT
AGGCTGTATCTTGCATATCACTGTCCGTACGCGCAGCGCGCTTGGATTGCCAGGAACTGCAAGGTAGTGCTAGTG---G-
---GAGTGTTCTTTGATTCACAGACGCAGCCCATACTTTCAGCTCAGCGGTCTTGTATCTTG--TTAGCTCGTGCTAGTT
CTTTTTGTATGCCTTCAGTGGTCCTATGCTAAGTTGAATCTTCTTTCTGTATTATTTTGTCCAGGGTTTACAGGACAAGA
TCAAGGTAGTCGCCATAGATCTGGCGGACAGGCCAGCTTGGTACAAGGAGAAAGTTTACCCGGAGAACAAGGTAGTATGA
TT------------------------------------------------------------------------------
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------------------------GATCTCTTTTACTTCTCACCTGTATG------------------------------
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TACAAGAAGAATCTTTTAC-------------------------------------------------------------
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---------------------------------TGCAGTTTATCATTTCTGTTCA-TTCATGCACGCTTCCTTTATAATC
T------GG-CAGGTGCCTGCCCTGGAGCATAACAACCAGGTGAAAGGAGAGAGCTTGGATTTGGTCAAGTACATTGACA
GCAATTTTGATGGCCCAGCATTGCTGCCTGATGTAAGGCAGATATATCCAATCAGTCTTCATATGTGCAATGTTTGTTAA
ACG-GTGCAAAATT------------------------------------------------------------------
--------------------------------TTGTCGGTGGTATTAAAGTTTGCGTTCATATAAATTGGTAGGATTCTG
CAAAGAAGCAGTTTGCTGAGGAACTGCTTGCGTTCA--------------------------------------------
----------------------GCGATGGGTTTAATAGTGCATTTTTCTCATGCTTACGCTCCAAGGGAGATGTGTCAAA
TGAAGCCGGTAAAAGGAGCACA---------------------------CCAAT---------ATTTGTTTGAGATTTTT
TTTTTTTGCA-------------TTTTATACTCATAATTTAATTTACTCATGTCA-------------------------
----------------------------------------TGTCTTCCATTAGCTGCTGCTGTGGATAAAATAGAAGCTG
CCTTG---AAGTTCAGCGATGGCCCATTCTTCCTTGACCAATTCAGTTTGGTATGTCACTCCACCT-GGGAATCCTTTCC
TTTTCCCTTAGCCGTGCCCAAATTTGGTAGAATTATGAAAAGAACTGTAGTTTGTTGTGATTTT-TTTT-----------
-------------------AGGTGGACATTGCGTATGTACCATTCATCGAAAGGTTTCAGATATTCTATTCTGGTATCAA
GAAGGATGATCTTGCCAAGGGAAGGCCCAACCTGCACAAATTCATTGAGGTAAGTAATTCAGGTTGATGCTAGATGAGAT
TATTCACATTGTTTGGAAGAGTTGTTCTGACAAGACTGTATAGTGTAACATACCCCTAGTACACTCTGATGCAACTCAAT
CTCATGTCAGTTCTCCAATTCGGCATGTTACAGGAAGTGAACAAGGTCGACGCATATACACAGACCAAATTGGACCCACA
GTTTCTACTTGATCAAATGAAGGAGAAGTTTGGGGTACGATGTTTCCTTATATCTCGGCATCGGTTCGTGTTATCTTCCA
ATCCCGATAAAAACTTACACGCTAATTTTAACTTTTCAGATTGCTTGA--------------------------------
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>chr4A_1_TraesCS4A01G103800
TCTAGATTCGTTGATCGACCTTAAGTTGGACCTATCACCCGATTCCAATAAAGGGAAGCAAATTGTCACATATGATAAAC
TTCTGGTTCGACCACATGTGATTACGTCTCCGACACCTGCTAAGTGGATTTTGCCTCAAACTGGTTGGGTCATATTAAAT
ACTGATGGATCATATGATGAGGAGTTGAGGACGGCTTAGCTGGAGCAGGTATAGTGCTCAGAGATG----------TATT
ATCTTTTCTTCCCACATACAACTATTTTGTTGTAGAGATGCACTCGAAGCGGAATTGTGTGCTTGCATGGAGAGCCTTTC
GTTTGCCATTCAGAGAAGTGATTTTCCAATTATCATTGAGATGGATTCAATTGTTGCAGTCAAGCTTATCCAGGCGAAGG
AAACAGATAGATCGATCTTTACTTCATTTATCAAGGAGATTAGGTATTTTATGAATCTTCGTGAATGTTGTATTACTATG
TAGCTCGCTCACAAAATAGAGTTAGTGATAGTCTAGCTAATTTTGCTCATACTGAACGGAGAACCATGACTTGGGTAGGT
TCTGGCCCTGATGAGTCTGTCGTGCTAGCTGCTCATAATTGTAAGGACTTGGTGAGTTGAGTAATACAATTATTTCACCC
GCAAAAAAATATATGTACATTTGTTTTTTCCGGGTAAAAAAAGGTTGAGGTTGAGTAATCCG-------TGTAGACACTA
CCACACGGGAGTGGGTGACCA----ATCCCTTTTGCAGCTTCATCAGTTACCAGCAGCTTGCATCGGTTCCCTGGGACCT
CACCTCAGTGTACGGCACGGCGTGCAGATGCCATCCACG---TGAAACACGTTGCC------------------------
-----------------------------------------------------------------CGGGTCTACATTTCT
GCTGATGCCTGCTCTGCCGTGAATAATTGCACTCGCCCGCCTCCCCTTGCCTTGCTGCCCGTCACCATTGCCGACGCCTG
CCTCCTCCTCG---ATCTCCCATTCTCACCTTCCCGTCCCCCAGCACCGCCGGGACATTCCTCCCGAACCGTCGCCATGG
CAACCGCCGTTCCACCGATCATGTGAGTGAGCGAAGCAGCAAGGCACAGTATCTTTGTTTGTGCAGTGATGTAGCCTGGC
GCTCTGGCCGTTCCGGATCTCGACTAAATTACTCGATTTCCTAACGTCGTGTGCCTTTCTGTAATTTA------------
---------ACATATGCGCAGCTCCCCGAAGGAAGATCTCCCCCCTCCACTGACCTCCGCCTCCGAGCCCCCTCCGCTCT
TCGACGGCACCACCAGGT-AAAATCTAACCACACAGCAAGAAACCAAATTGCACTGCAGGTGTATCTTGTATTCTTGATT
ACAA---------------CTTTCCAGTTCTGCACAGATCAAGGGGTGATTTGGTATTTTATTTGCT-------TGGTGT
AGGCTGTATCTTGCATATCACTGTCCGTACGCGCAGCGCGCTTGGATTGCCAGGAACTGCAAGGTAGTGCTAGTG---G-
---GAGTGTTCTTTGATTCACAGACGCAGCCCATACTTTCAGCTCAGCGGTCTTGTATCTTG--TTAGCTCGTGCTAGTT
CTTTTTGTATGCCTTCAGTGGTCCTATGCTAAGTTGAATCTTCTTTCTGTATTATTTTGTCCAGGGTTTACAGGACAAGA
TCAAGGTAGTCGCCATAGATCTGGCGGACAGGCCAGCTTGGTACAAGGAGAAAGTTTACCCGGAGAACAAGGTAGTATGA
TT------------------------------------------------------------------------------
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------------------------GATCTCTTTTACTTCTCACCTGTATG------------------------------
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TACAAGAAGAATCTTTTAC-------------------------------------------------------------
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---------------------------------TGCAGTTTATCATTTCTGTTCA-TTCATGCACGCTTCCTTTATAATC
T------GG-CAGGTGCCTGCCCTGGAGCATAACAACCAGGTGAAAGGAGAGAGCTTGGATTTGGTCAAGTACATTGACA
GCAATTTTGATGGCCCAGCATTGCTGCCTGATGTAAGGCAGATATATCCAATCAGTCTTCATATGTGCAATGTTTGTTAA
ACG-GTGCAAAATT------------------------------------------------------------------
--------------------------------TTGTCGGTGGTATTAAAGTTTGCGTTCATATAAATTGGTAGGATTCTG
CAAAGAAGCAGTTTGCTGAGGAACTGCTTGCGTTCA--------------------------------------------
----------------------GCGATGGGTTTAATAGTGCATTTTTCTCATGCTTACGCTCCAAGGGAGATGTGTCAAA
TGAAGCCGGTAAAAGGAGCACA---------------------------CCAAT---------ATTTGTTTGAGATTTTT
TTTTTTTGCA-------------TTTTATACTCATAATTTAATTTACTCATGTCA-------------------------
----------------------------------------TGTCTTCCATTAGCTGCTGCTGTGGATAAAATAGAAGCTG
CCTTG---AAGTTCAGCGATGGCCCATTCTTCCTTGACCAATTCAGTTTGGTATGTCACTCCACCT-GGGAATCCTTTCC
TTTTCCCTTAGCCGTGCCCAAATTTGGTAGAATTATGAAAAGAACTGTAGTTTGTTGTGATTTT-TTTT-----------
-------------------AGGTGGACATTGCGTATGTACCATTCATCGAAAGGTTTCAGATATTCTATTCTGGTATCAA
GAAGGATGATCTTGCCAAGGGAAGGCCCAACCTGCACAAATTCATTGAGGTAAGTAATTCAGGTTGATGCTAGATGAGAT
TATTCACATTGTTTGGAAGAGTTGTTCTGACAAGACTGTATAGTGTAACATACCCCTAGTACACTCTGATGCAACTCAAT
CTCATGTCAGTTCTCCAATTCGGCATGTTACAGGAAGTGAACAAGGTCGACGCATATACACAGACCAAATTGGACCCACA
GTTTCTACTTGATCAAATGAAGGAGAAGTTTGGGGTACGATGTTTCCTTATATCTCGGCATCGGTTCGTGTTATCTTCCA
ATCCCGATAAAAACTTACACGCTAATTTTAACTTTTCAGATTGCTTGAAGATGTGACCAAGGATAACCAAATATGCATGC
CAGGGAATCGCTGCAGAATAGCAGATTTAGACTCGGGGGTGTTGCAATATATTTTGAATAAAAGATGCATGCCATGCATA
TAGGCCATGCTTTTATATAGAGAATAA----ACAGACAAACTGGGTCTTATTGTAAACTTTTATTGTCTCGTAAAGGATG
ATCA--------TTCTGAGTTGTGCTGAATGCTCGTGAACT---T-TTCTTAATGAACCGGTGCTCCTTTCTTACTCCTA
TCAATTTTAGTTGTCCACACCACACGTGTGCTGATCATACATATTAAGGGGTTGCTAGCAGTATCGACTACATACAGATT
CATCATTCATGCGTTCGCTCGGGCGTGGTGGGAATGCGTACTTAATCAGTTCATATCTGATAATGGTGATGCCACGAACC
TGTCCTAATCGCTCTATGTCGGTACCTCGTAGTTTCTTCCCA---------------------------------GTACG
AGGCTCCTAATTGAAATGTGAAATGCTTGGCGTGTACGTTCAACGAGCTCCAGGGAGATAACGAAGAGCTGCGGACCAAA
GTCACTGTCCAAACGAG----TTAAAGTCAGTGTCCTCGGCATGTTTTCAACCATCCGAT-----AGTACGATGCC----
-----------------------------------GACTAATTGTCTCCGGCGAATGTGCAGCCTATATCGTGGCACCAA
CCGCCGTGACATGGCTTCAGCCATTACCGCTCGCTT---------------CTTCTTCTTCTTCTTCTTCTTCCACGCTA
GCTCGGCCGTCACAGCTGACGTCTGTGCTCCCTCAAAGTTTTCTTCGT-----------ACTTCT------------CCA
TCAGCCCTACTTCCGTTTACCAGTCCGCACAGTGGAAGTGCTTTATATACGCTTACAAAAATGTATACTAGTACATTTTG
TGCGTCTCGAGCTCCTTGATCACTAGCTGCAGGTCGCAATGGCAGCGTCTCCAGCAAGCAAG---TAC----TGCAAAGT
TCCTTCCCTGCTTAAAATTACTCTGCTGCCGCGCGTGATCACTAGATGGATTTTCTACTCCATGATCGCT
>chr1A_95
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--------------CATGTGATTACGTTTCCGACTCCTGCTAAGTGGATTCTGCCTCGAACTGGTTGGGTTAAATTAAAT
ACTAATGGATCATATGAT--------GAGGACATCATAGCTGGAGCAGGTATGGTGCTCAGAGATGATATGAGTAGTATT
ATCTTTT-------------------------------------------------------------------------
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-------------------------------------------------------------------------GTTCCTG
CATACAACTATTTTGCTGAAGAGCTGCACTCGAAGCGGAATTGTGTGCATGCATGTAGGGTCTTCGTTTGCCATTCAAAG
AAGTGATCTTTCGATTATCATTGAGATGGATTCAATCATTGCAGTCAAGCTTATCCA-----------------GGCGAA
GGAAACCGATAGATCGATTTTTACTTCACTTACCAAGAAGATTAGGTATCTAAT---------GAATCTTTGTGATTGTT
GTATTACTCA-------------TGTAGCTCGCTCACGAAATAGAGTTAGTGATAGTCTAGCTAATTTTGCTCGTACTGA
AGAGAGAACTATGACTTGGGTAGGTTCT-GCCCTGATGAGTGTCTAGCGCTAGCTGCTGATGCTGGTAAGGACTTGA---
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---------------------------------------------TGAGTTGAGTAATACAATTATTTC-----------
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-------------------ACCCGTAAAAAATATTATTAC----------------------------------------
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----------------------------------------------------------------------
>chr2A_113
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--------------------------------ACACCTGCTAAGTGGATTTTGCCTCGAACTGGTTGTGTTAAATTAAAT
ACTGATGGATCATATGAT--------GAGGACGGCTTAGCTGGGGCAGGTATGGTGCTCACAGATGACATGGGCAGTATT
ATCTTTTCTTTCCACAGACAACTATTTTGTTGTAGAGATGCACTTGAAGCGGAATTGTGTGCTTGCATGAAGGGCCTTTC
ATTTGCCATTCAAAGAAGTGATCTTCCAATTATCATTGAGATGGATTCAATCGTTGCA----------------------
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-----------------------------------------------GACAAGCTTATCCAGGCGAAAGAAACAGATAGA
TT------------------------------------------------------------------------------
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------------------------GATCTT--------------------------------------------------
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---------------------TACTTCACTTATCAAGGAGATTAGGTATCTCAT---------GAATCTTCGTGATTGTT
GTATTACTCA-------------TGTAGCTCGCTCATAAAATAGAGTTAGTGATAGTCTAGCTAATTGTGCTCGTACTGA
AGGGAGAACCATGACATGGGTAGGTTCTGGCCCTGATGAGTCTCTAGTGCTAGCTGCTGATGATTGTAAGGACTTGG---
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---------------------------------------------TGAGTTGAGTAATACAATTATTTC-----------
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-------------------ACCCGCAAAAAAA------------------------------------------------
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----------------------------------------------------------------------
>chr4D_641
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----------ATATGTACATTTGCTTTTTCCGGGTAAAAAAAA----AGGTTGAGTAATCCATGTAGTCTGTAGACACTA
CCACACGGTGATGGGAGTGAGTACCATTCCCTTTACAGCTTCATCGGTTACCG---GCTTGCATCGGTTCCCTGGGACCT
CACCTCAGTGTACGGTATGGCGTGCAGATGCCATCCGCG---TGAAACACGTTGAAGAAGTGCCGC-----ACGGAAGGT
TGAGATGAGCTCCTACAA-----GCCATGATCGCGTCTATAGGCGAGGCCCATCCAGCCAGCGGTCGGGTCCACATTTCT
GCTGATGCCTGCCCTGCCGTGAATAATTGCACTCGATCGCCTCCCCTTGCCTTGCTGCCCGTCAGCACTGCCGACGCCTG
CCTCCTCCTG-----TCTCCCATTCTCACCTACCCGTCCCCCAGCACCGCCGGGGCATTCCTCCCGAACCGTCGCCATGG
CAACCGCCGTTCCACCGATCATGTGAGTGAGCGAAGCAGCAGGGAACAGTATCTTG----GTGCAGTGATGTAGCCTGAC
GCTCTGGCCGTTCCGCATCTCGACTAAATTACTCGATT------------GTGCCTTTCTTGTAATTTAATATGA-----
---------ACATATGCGCAGCTCCCCGAAGGAAGATCTCCCCCCTCCACTGACCTCCGCCTCCGAGCCCCCTCCGCTCT
TCGACGGCACCACCAGGTAAAAATCTAACCACACTAGAAGAAGCCAAATTGCACTGCAG---------------------
ATAA---------------CTTTTCAATTTTGCACGGATCAGGGGCTAAATTCGTGTTTTATTTGCT-------TCGTGT
AGGCTGTATCTTGCATATCACTGCCCGTACGCGCAGCGCGCTTGGATTGCCAGGAACTGCAAGGTAGTGCTACTGGGAG-
---GAGTGTTCTTTGATTTACACACGCAGATCATACTTCCAGCTCAGCGGTCTTGTAATTTTTTTTAGCTCGTGCTAGTT
CTTTTTTTATGCCTTCAGTGGTCGTATGCTAAGTTGAATCTTCTTTGTATATTATTTTGTCCAGGGTTTACAGGACAAGA
TCAAGGTAGTCGCCATAGATCTGGCAGACAGGCCAGCTTGGTACAAGGAGAAGGTTTACCCGGAGAACAAGGTAGTATGA
TT------------------------------------------------------------------------------
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------------------------GATCTCTTTTACTTCTCACCTGTATG------------------------------
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TACAAGGAGAATTTTTTAC-------------------------------------------------------------
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---------------------------------TGCAGTTCATCATTTCTGTTCA-TGCATGCACGCTTCCTTTATAATC
T------GA-CAGGTGCCTGCCCTGGAGCATAACAACCAGGTGAAAGGAGAGAGCTTGGATTTGGTCAAGTACATTGACA
GCAATTTTGATGGCCCAGCATTGCTGCCTGATGTAAGGCGGATATATTCAATCAGTCTTTATATGTGCAATGTTTGTAAA
AATTTGCAAATACTCCCTCTGTAAAGAAATATAAGAGTGTTTAGATCACTACTTGTGATCTAAACGCTCTTAGTGATCTA
AACACTCTTATATTTCTTTACGGATGGAGTAATTCTCAGTGGTATTAAAGTTTGTGTTCATATAAATTGATAGGATTCTG
CAAAGAAGCAGTTTGCTGAGGAACTGCTTGCGTTCA--------------------------------------------
----------------------GCGATGGGTTTAATAGTGCATTTTTCTCATGCTTACGCTCCAAGGGAGATGTGTCAGA
TGAAGCCGGTAAAAAGAACATA---------------------------CCAAACTTTGTAACATTTGTTTGAGAAATCC
TATATGAAAAAGATATGACCAGTTTGTATACTCATAATGTAATATTCTCATGTCA-------------------------
----------------------------------------TGTCTTCCATTAGCTGCTGCTGTGGATAAAATAGAAGCTG
CCTTGGGAAAGTTCAGCGACGGCCCATTCTTCCTTGGCCAGTTCAGTTTGGTATGTCACTCCACCT-GG-AATCCTTTCC
TGTTCCCTTAGCCGTGCCCAAATTTGGTGGAATTATGAAAAGAATTGTG-------------TTATTTT-----------
-------------------AGGTGGACATTGCATATGTGCCATTCATCGAAAGGTTTCAAATATTCTATTCTGGTATCAA
GAAGGATGATCTCGCCAAGGGCAGGCCCAACCTGCACAAATTCATTGAGGTAAGTAGTTCAGGATGATGCTAGATGAGAT
TATTCACATTGTTTGGAAGCGTTGTTCTGACATGGCTGTATAGTGTAACATACCCCTAGTACACTCTGATGCAACTCAAT
CTCATGTCGGTTCTCCAATTCGGTATGTTACAGGAAGTGAACAAGGTGGACGCATATACACAGACCAAACTGGACCCACA
GTTTCTGCTTGATCAAATGAAGGAGAAGTTTGGCGTACGATATTTCCTTGTATCTCGGTGTCGGTTTGCGTTATTTTCCA
ATCCCGACAAAAGCTTACACGCT-ATTTTAACTTTTCAGATTGCTTGAAGATGTGACCAATGATAACCAAACATGC----
CAGGGAATGGCTGCAGAATACGTGGAAAACT-TCGGGGGTGTTGCAATATATTTTGAATAAAAGATGCATGCCATGCATA
TAGGCCATGCTTTTAGAGAATAAACAGACAGACAGACAAACTGGGTCTTATTGTAAACTTATATTGTCACGTGAAGGAGG
ATCA--------TTCTGAGTTGTGCTGAATGCTCGTGAACTCTCT-TTCTTAATGAACCGGTGCTCCTTTCTTGCTCTTA
TCAATTTTAGCTGT-----CCACACGTGTGCTGATCATACATATTAAGGGGTTGCTAGCAGCATCGACTACATACAG---
----ATTCATGCGTTCGCTCAGGCGTGGTGGGAATGCGTACTTAATCAGTTCATATCTCATAATGGCGATGCCACAAACC
TGTCCTACTCGCTGTATGTCGGTGCCTCGTAGTTTCTTCCCCATACGAGTTTTTTTTTTTTTTTTGCAATTCCCCGTACG
AGGTTCCTAATTGGCT-------TGCTTGGTGTATACCTTCAACGAGCTCCAGGGAGATAGCAAAGAGCTACCGACCAAA
GTCACTGTCCAAACGAGTTAATTAAAGTCAGTGTCCTCGGCATGTTTTCAACCATCGACTACAACAGCACGATGCC----
-----------------------------------GACTAATCGTCTCCGGCGTATGTGCGGCCTATATCATGGCACGAA
CCGCCGTGACATGGCTTCAGCCACTACCGCTCGCTT---------------CTTCTTCTTC------------CATGCTA
GCTCGGCCGTCACAGCTGACGTCTGTGCTCGCTCAAAGTTTTCTTCGTTTCTTCTTCGTACTTCTCCATCAGCCCCACCT
TCAGCCGTACTCCCGTTTACCAGTTTGTATAGCGGCAGTGCTTTATATACGCTTACAAAAT---------GTACATTGCA
CACGTCCCGAGTTCCT-GATCACTAGCTGCTGGTCGCAATGGCAGCGTCTCCAGCAAGCAAGTACTAC----TGCACAGT
TCCTTCTTTGCTTAAAATTACTCTGCTGCCGCGCGCGATCACTAGATGGATCTTCTACTCTATGATCGCT
>chr4B_742
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------------------------------------------ATCAGTCACCAGCAGCTTGCATCGGTTCCCTGGGACCT
CACCTCAGTGTACGGTACGGCGTGCAGATGCCATCCGCGCCGTGAAACACGTTGAAGGAGTGCCGCACGGAACGGAAGGT
TGAGATGAGCTCCTATCCTACGCGCCATGATCGCGTCTATAGGCGAGGCCCATCCATCCAGCGGTCGGGTCCACATTTCT
GCTGATGCCTGCCCTGCCGTGAATAATTGCACTCGCTTCC---------CCTTGCTGCCCGTCACCACTGCCGACGCCTG
CCTCCTCCTCCTCCATCTCCCATTCCCACCTTCCCGTCCCCCAGCACCGGCGGGACATTCCTCCCGAACCGTCGCCATGG
CAACCGCCGTTCCACCGATCATGTGAGTGAGCGAAGCAGCAGGGCACAGTATCTTG----GTGCAGTGATGTAGCCTGAC
GCTCTGGCCGTTCCGCATCTCGACTAAATTACTCGATT------------GTGCCTTTCTTATAATTTAATACTTATATA
CTTATAAACACATATGCGCAGCTCCCCGAAGGAAGATCTCCCCCCTCCACTGACCTCCGCCTCCGAGCCCCCTCCGCTCT
TCGACGGCACCACCAGGTAAAAATCTAACCACACAAGAAGAGGCCAAATTGCACTGCGGATGCATCTTACT---------
ATAA---------------CTTTTCAATTCTGCACAGATCAAGGGCTAAATTCGTGTTTTATTTGCT-------TCGTGT
AGGCTGTATCTTGCATATCACTGCCCGTACGCGCAGCGCGCTTGGATTACCAGGAACTGCAAGGTAGTGCCAGTG---GT
ATCGAGTGTTCTTTGATTCACAGACGCAGCCCATACTTTCAGCTCATCGATCTTGTATTTTTTTTTAGCTCTTGCTAGTT
CTTTTTTTATGCCTTCAGTGGTCTTATGCTAAGTTGAATCTTCTTTCTGTATCATTTTGTCCAGGGTTTACAACACGAGA
TCAAGGTAGTTGCCATAGATCTGGCAGACAGGCCAGCTTGGTACAAGGAGAAAGTTTACCCGGAGAACAAGGTAGTATGA
TT------------------------------------------------------------------------------
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------------------------GATCTCTTTTACTTCTCACCTGTATG------------------------------
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TACAAGGAAAATCTTTTAC-------------------------------------------------------------
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---------------------------------TGCAGTTTATTGTTTCT----A-TTCATGCACGCTTCCTTTATAATC
T------GACCAGGTGCCTGCCCTGGAGCATAACAACCAGGTGAAAGGAGAGAGCTTGGATTTGGTCAAATACATTGACA
GCAATTTTGATGGCCCAGCATTGCTGCCTGATGTAAGGCAGATATATCCAATCAGTCTTCATATGTGCAATGCTTGTAAA
AACAGTGCAAAATT------------------------------------------------------------------
--------------------------------TTGTCAGTGGTATTACAGTTTGTGTTCATATAAATTGGTAGGATTCTG
CAAAAAAGCAGTTTGCTGAGGAACTGCTTGCGTTCA--------------------------------------------
----------------------GCGATGGGTTTAATAGTGCATTTTTCTCATGCTTACGCTCCAAGGGAGATGTGTCAGA
TGAAGCCGGTAAAAAGAGCATA---------------------------CCAATCTCTGTAACATTTGTTTGAGAAATTC
TATATGAAAATATTCTGACCAGTTTATATACTCATAATGTAATATTCTCATGTCA-------------------------
----------------------------------------TGCCTTCCATTAGCTGCTGCTGTGGATAAAATAGAAGCTG
CCTTGGGAAAGTTCAGCGACGGCCCATTCTTCCTTGGCCAGTTCAGTTTGGTATGTGACTCCACCT-GG-AATCCTTTCC
TGTTCCCTTAGCCGTGCCCAAATTTGGTAGAATTATGAAAAGAATTGTG-------------TT-TTTT-----------
-------------------AGGTGGACGTTGCATATGTGCCATTCATTGAAAGGTTTCAAATATTCTATTCTGGTATCAA
GAAGGATGATCTCGCCAAGGGCAGGCCCAACCTGCACAAATTCATTGAGGTAAGTAATTCAGGATGACGCTAGATGAGAT
TATTCACATTGTCTGT------------------------TAGTGTAACATACCCCTAGTACACTCTGATGAAACTCAAT
CTCATGTCAGTTCTCCAATTCGGTATGTTACAGGAAGTGAACAAGGTCGACGCATATACACAGACAAAACTGGACCCGCA
GTTTCTGCTTGATCAAATGAAGGAGAAGTTTGGCGTACGACATTTCCTTATATCTTGGTGTCGGTTCGTGTTATTTTCCA
ATCCC-----AAGCTTACACGCT-ATTTTAACTTTTCAGATTGCTTGAAGATGTGACCAAGGATAACCAAATATGCATGC
CAGGGAAT-GCTGCAGAATAGCAGATTTAGACTCGGGGGTGTTGCAACATATTTTGAATAAAAAATGCGCGCCATGCATA
TAGGCCATGCTTTTAGA--ATAAACAGACAGACAGACAAACCGGATCTTATTGTAAACTTATATTGTCACCTGAAGAAGG
ATTATTCTGGCCTTCTGGGTTGTGTTGAATGCTCGTGAAGT---TGTTTTTAATGAACTGGTGCTCCTTTCTT-CTTCTA
TCAACTTTAGTTGT-----CCACACGTGTACTGATCATACATATTAAGGGGTTGCTAGCAGCATCGACTACATACAG---
----ATTCATGCGTTCGCTCAGGCGTGGTGGGAATGCGTACTTAATCAGTTCATATCTGATAATGGCAATGCCACAACCT
ATCTTTAATCGCTCTATGTCGGTGCCTCGTAGTTTCC---------------------------------TCCCCGTACG
AGGTTCCTAATTGGCT-------TGCTTGGTGTACACTACGTT------------------CAAAGAGCTACCGACCAAA
GTCACTGTCCAAACGAGTTG----AAGTCAGTGTCCTCGGCATGTTTTCAACCATCGACTACAACAGTACGATGCCGCCT
AAAGACTAATCGTCTCCTTACCCGGAAAAAAAAAAGACTAATCGTCTCCGGCGTATGTGCGGCCTATATTGTGGCACGAA
CCGCCGTGACATGGCTTCAGCCATTACCGCTCGCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCACGCTG
GCTCGGCCGTCACAGCTGACGTCTGTGCTCGCTCAAAGTTTTCTTCGT-----------ACTTCTCCATCAGCCCCACCT
TCAGCCCTACTTCCGTTTACCAGTTCGCATAGCGGAAGTGCTTTATATACGCTTACAAAAATGTATACTAGTACATTTTG
TGCGTCCCGAGCTCCTTGATCACTAGCTGCTGGTCGCAATGGCAGCGTCTCCAGCAAACAAG---TACGTACTGCACAGC
TCCTTCCC----TAAAATTACTCTGCTACCGCGCGTGATCACTAGTTGGATTTTCTACTCTATGATCGCT
>chr4A_1158
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--------------TGCGCAGCTCCCCGAAAGAAAATCTGCCCCCTTCGCTGACCTCCACCTCCGAGCCCCCGCCCCTCT
TCGGCGGCACCACCAGGTGAATTGGGAGGAGACTTATGAGAGATCAAATTGCATTGCAG---------------------
ATACTTAACTATCTCGTGGCTTGTCACTTCTGCATAAATCAAGGGTTAACCTGCTAATTATTTTTTTCCATGTCTCGTGA
AGGCTGTATGTTGCATATCACTGCCCGTACGCGCAGCGCGCTTGGATTGCCAGGAACTACAAGGTACTACCAA-------
------TGTTGTTTGATTTG----------------TGGACATAATTCGTGCAGAAATCGTACTTTTGGTGCTGATATGC
AAGCAACACTGAATCATT-TTTACACCCAAATGAAATCTAATGGCTTTTC------TTGTCCAGGGTTTGCAAGACAAGA
TCAAGATAGTCGGGATCGATCTCGCAAACAGGCCGGCTTGGTACAAGGAGAAGGTTTACCCACAGAACAAGGTATGGTGA
ATCTCAACTCTGCCCCACGCCACGTGTACAATATCTTAACGACTTCTACTTCAGTAGACCCCCTAAACACAAGGACGGCT
TAGATTAGCCCATACCTCTTCATAATAAAGGACATGATGGTCATATTTTGTTGTGTATGTTTTTCTTTTTAGAATATCCA
TTCGATTTATACGCATAGGCCGTACACTTGCCCGCTGGGCCTTCCCAACCATCTCTTTAAATCGCAAAAAATATGAGTGT
GCCAAGATTCGAGACAGGAACTTCTGGTTCAAAATGCGACGCTATAACCAACTTGCCACCATCACTTACGTTGCAGGCGT
CTTTCTTATTATTTTCTTCTATCCGCTTTTCTTTTTCCAATTTTCTTCTTTCCTTCTTTCTTTTTTCTTGCTCTTTTTTT
CTCGTTTTTAACGGTTTTGTCCCAGATTTATTTTCCTTCTCTATTTCTTATTTTTCGTTTTCCTTTCTTTTTTGTTCATT
TTTTATTTTCCCTTTTCTCTTGCAATGTGCAAACTTTTTCCAATTTCGTTTCTATGAAAGAATGGACTTTTAAAAAATTT
GCGAACATTTTTTTAAACTTGGTGAACATTTTCCTAAATCAATAAATTTTGTAAAATTCATAAAAAATATTGATGAACGT
TTTTTCAAAATAGATGGTTTTTTTCAAAATTGATGTTCCTTTTTCTCAAAATTGATGAAGTTTTTTCAAAATGAATGCAT
ATTTTCAAAGTAGATGAATTTGTTTTGCCAAAATTGATGGACTTTTTTCAAAATCGATCATACAAGGACATGAAAAATAC
TGAGACCATTTAAGAGATGTTGAGAAATGGGCTACTCCCAAACGGACTCTTCTGGCCTAACTGAACAGTCCCCGTCGAAC
ATGGTATTTTTGGAAATCTCAAGACTGACCCAAACTTTCGTAAGCAGGTAGGCGTGCCCATGGTAGTCATTTACGCCAGG
TTTGAATGATTTCCTACACCATATGCAAGTTGCGACATGTCCCGCCATTTATCGACTATTTTTTACCGAGAAAACTCCAG
AAAATACAAAATTTGTCGAAAAGCAAAGCAACTTGGCATGGTGCCATAACCTGGTCATACAAGCCATTGGAAAAAATAGG
GTCATTTCAAGGATGTCGAAAAACAACATGCTATGAGATGAAGCCTTGTATTTTATGAATATTTGTATTTCAATGTTTGT
ACTTTTTTTTACAATTGTGTCTGTTCAATGTTTGTATAATTTTTTAGAATGCGAGTGTTATAACTTATGAACAAAATTTG
AATAGGCAAACTTTTTTTGAAATTTTGGAAAAATGAAAATGGAAAAGAAACAAAAACTATCAGCAAAAAAGAGAAAGAAA
TAGTGGGAAAAATCTGTTTTGCTACAGTAAGCTGGTTGGTAAAGGATAGTTCTAGTAGTTTGCGTTTTTGTAGTTAGACA
TTTGAGCTTATCAGTTTGTGTACTTAGTGGCGAGCGGTCGGCAGTGAGAGCTACAGGGTTTGATCCGCGCATTGCCATTT
CCTGTTTAATGTATTTTCCCTGTTTTCGCGTGCGCAGTCAAGGCAGCATACTGTGCATGGCACCTTCTATCTGAATCTAC
TTCCGGAAGGTGAACCCTATTTGCCGCCCGAGGGTGTCAAACTGTCATGGCTTTGTTGAAGCGAAGCGACCGACACGATA
TGCGTCGGCCCACTTTGAACGAGCAACCGGTTTTAGGAAAATGTTCACTGTGTATAAAAAGTGTTCATCGTGTCTACTAA
TTTTATTCAACGTGCATTTCAAAAATATTCGGCATATATTTTAAAGAAAGTTTAGTTTGTATTTGAAAAAAAACACCGTA
TACTAGGAAAATGTTAAGTGCGTATTTTAAATTCACTTTTTAGAAAACTGTTCATATTTAAGAAAAGAATATTATATTTA
TTTTTTATGATTTTGAAACATTGTTGGCATTTTCAAGAAATTTTGTTCGCATTGTTTTGCAAAAGTATTGAAAAAGAAAA
AAAGTCGGATCTGCAGCTCTAAATAGTACTTTAAACGTTAGCGCTGCCTTTAAGCTGTACTCAGTTACTAGGTCATCTGG
TTAGCATTGGTTCCATTCATGGCCAGGTTGTGAGTTCAATACCTGGTGCAAGTGCTTTTATTTTTCGCATTTATTATGGA
TACATGTCTCAAAAAAAATATTAATACGTGTACGACAGACTACCGTATAGTTTGTGAAATGTCTATATTGCCCTTTATAC
GCTTTGTGAGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTCTACCGAAGCATTGCTCTATCTTAACACTGTTTCAGTTCATTATCTCTATGATCTCCATCCACACTTGCCTTAAATTT
ATTTTTCAA-CAGGTGCCTTCACTGGAGCATAACAACCAAGTGAAAGGAGAGAGCTTGGATTTGGTCAAGTACATTGACA
GCAATTTCGATGGCCCAGCATTGCTCCCTGATGTAAATATTCTCTATTTTTAACCATCATGATTCATGATAACCAGAGAA
AGCAA--------T------------------------------------------------------------------
--------------------------------TTCTCAGTGGTTTTAACGCTTGCATTC--ATAAATTGGCAGGATTCTG
CAAAGAAGCAGTTTGCTGAGGAGCTTCTTGTGTACA--------------------------------------------
----------------------CCGACGAGTTCAATAAAGCACTATACTCATCCATAACCTCCAAGGGAGATGTGGCAGA
GGAAACTGGTAAAAG-AGCAGA---------------------------GCCATACCTGTAACCTGTTTAATCATCTAAT
AAGTTCTACAGGCTAGAGTATGTAATTCGTATTTATAAC-----TTCTTATGCAT-------------------------
----------------------------------------TATCTTCCATTAGTTGCTGCGCTGGATAAAATAGAAGCTG
CCCTGGGAAAGTTCAGTGATGGCCCTTTCTTCCTTGGCCAGTTCAGTTTGGTATGTCACGCCAATCCGGGAATCCTTAAA
ATGCCATTTCAG---------------------------AAGAATTGTG-------------TTGACATGTTGACTTGTT
GCGATGTTCATTTCTACACAGGTGGACATTGCATATGTGCCATTTATCGAAAGGTTTCAGATATTCTTTTCTGGTATCAA
AAACTATGATATCACCAAGGACAGACCGAACATTCAGAAATTCATCGAGGTAAGT-------------------------
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>chr4B_1158
--------------------------------------------------------------------------------
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--------------TGCGCAGCTCCCCGAAAGAAAATCTGCCCCCTTCGCTGACCTCCACCTCCGAGCCCCCTCCACTCT
TCGACGGCACCACCAGGTGAATTTGGACAAGACATACGAGAGATCAAATTGCATTGCAG---------------------
ATACC-----ATCTTGTGGCTTGTCAC-TCTGCATAAATCAAGGGTTAACCTGCCAATTCTTTTTTT-CATGTCTCGTGA
AGGTTGTATGTTGCATATCACTGCCCATATGCGCAGCGCGCTTGGATTGCCAGGAACTACAAGGTAACTTC---------
------TGTTCTTTGATTTG----------------TTGATGTTCTTCGAACAGAAATCGTACTTTTGCTGCTGCTGTGC
AAGCAACACTGAATCATTGTTTACATCCGAATGAAATCTAATGGTGTTTC------TTCTCCAGGGTTTGCAAGACAAGA
TCAAGATAGTCGGGATCGATCTCGCAGACAGGCCGGCTTGGTACAAGGAGAAGGTTTACCCACAGAACAAGGTATGGTGA
ATCTCAACTCTGCTCCACGTGTACGA------------------------------------------------------
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-------------------TATCTTAACACTGTTTCAGTTCATCATCTCTGTGATA--CATCCACACTAACTTA------
--TTTTCGA-CAGGTGCCTTCACTGGAGCATAACAACGAGGTGAAAGGAGAAAGCTTGGATTTGGTCAAGTACATTGACA
GCAATTTCGATGGCCCAGCATTGCTCCCCGATGTAAATAT-------TTTTAACCATCATGATTCATGGTAACCAGGGAA
AGCAA--------T------------------------------------------------------------------
--------------------------------TTCTCAGTGGTTTTAACGCTTGCATTC--ATAAATTGGCAGGATTCTG
CAAAGAAGCAGTTTGCCGAGGAGCTGCTTGTGTACA--------------------------------------------
----------------------TCGATGAGTTCAATAAAGCACTATACTCATCCATAACCTCCAAGGGAGATGTGGCAGA
GGAAACTGGTAAAA------------------------------------------------------------------
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----------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSS-------------S-----------------------------S------------S-S-------
------------------SSSSSSSS--------------------------S---------------------------
----------S-----S---------------------------S------------------------S--S-------
S-----------S---------S----------------------------S------SSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS-------------S------------------SSSSS--------------S------------------
--------SSS----S-SSSS------S--S---S---------------------------------------------
---------------S--------------------S-----------------SS------------------------
-----------------------------------------------------------------------S--------
------------S-----------------------S------------------------------S------------
----------S---------------------------------------------------------------------
-----------------------------------------S-------------SSSSS------------------S-
---------------S----------------------SSSSSSSSSSSS----------SSS-S--S------------
--------------------------------------------------------------------------------
-----------------------------------S-----------------------S--S-----SSSSSSSSSSSS
-S---------------------S--S------------------S-S-S-------------------------S----
-----------------------S--------------------------------------------------------
-------------------------------------------------------------S------------------
------S-------------------------------------------------------------------------
-------------------------S------------------------------------------------------
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------S-------------------------------------------------------------------------
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--------S-----------------------------------------------------------------------
-----------------------------------------------------------------------------S--
-SS-----------------------------------------------------------------------------
-------------------------------------S------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------S-----------------------------------------------------------
-----S-S------------------------------S----S-S----------------------------------
--------------------------------------------------------------------------------
------------------------------------S---S---------------------------------------
--------------------------------------------S---SSSSSSSSSSSSSS------------------
--------------------------------S-----S-----------------------------------------
------------S--------S----------------------------------------------------------
-------------------S------------S-S---------------------------------------------
-----------------------S---------------------------------------------S----------
------S--------------------------S-------S----------------SS--------------S-----
-------S----S----------S--------------------------------------------------------
--------S-----------------------------------------------------------------------
---------------S-S-SSS--S-S---------------------------------S-------S---S-----S-
-------------------------------------------------------------------------S------
--------------SSSSS------------------------------------------S---------------SSS
SSSS----------------S---------------------------------------------S--------S----
-----------------------S-----------------S--------------------------------------
---S---------SSSSSSSSSS-------S--S---S----------------------S-S-------S-S-------
--------------------------------------------------------SSS---------------------
------------------------------------------S----------S------S----------------S--
------------------------------------------------------------------------S-------
------------------------------S------------------------------------------------S
------------------------S----S--S-----------------------------------------------
------S-----------------------S---------------------------------------------S---
------------------------------------------------------------S---------
>forward_567
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-------------------------------------------------------------------GACTTGGGTAGGT
TCTGGCC-------------------------------------------------------------------------
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>reverse_1786
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-------------------------GGACAGGCCAGCTTGGTAC------------------------------------
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>forward_1199
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-----------------------------------------------------------TGTGCAGTGATGTAGCCTGG-
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>reverse_4642
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-CGGTGCAAAATTTTGTCGGTG----------------------------------------------------------
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>forward_1488
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----------------------------TCTGCACAGATCAAGGGGTG--------------------------------
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>reverse_6358
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-------------------------------------GTTCAACGAGCTCCAGGGAG-----------------------
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----------------------------------------------------------------------
